Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017753.01.T01 | XP_013462097.2 | 98.519 | 270 | 4 | 0 | 1 | 270 | 71 | 340 | 0 | 552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017753.01.T01 | Q9S7G2 | 75.465 | 269 | 63 | 2 | 1 | 266 | 68 | 336 | 1.52E-152 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017753.01.T01 | A0A396J298 | 98.519 | 270 | 4 | 0 | 1 | 270 | 71 | 340 | 0.0 | 552 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380017753.01 | MsG0380017841.01 | 0.814083 | 1.845745e-51 | 1.226587e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017753.01.T01 | MTR_3g111600 | 98.519 | 270 | 4 | 0 | 1 | 270 | 12 | 281 | 0.0 | 550 |
| MsG0380017753.01.T01 | MTR_1g021855 | 85.609 | 271 | 38 | 1 | 1 | 270 | 97 | 367 | 4.20e-176 | 490 |
| MsG0380017753.01.T01 | MTR_8g078240 | 76.753 | 271 | 61 | 1 | 1 | 269 | 74 | 344 | 1.84e-157 | 442 |
| MsG0380017753.01.T01 | MTR_5g019220 | 75.547 | 274 | 63 | 1 | 1 | 270 | 94 | 367 | 4.68e-156 | 439 |
| MsG0380017753.01.T01 | MTR_3g092310 | 66.288 | 264 | 86 | 2 | 2 | 263 | 71 | 333 | 3.03e-134 | 383 |
| MsG0380017753.01.T01 | MTR_7g109210 | 64.368 | 261 | 90 | 2 | 1 | 261 | 93 | 350 | 1.41e-126 | 364 |
| MsG0380017753.01.T01 | MTR_7g094230 | 63.498 | 263 | 95 | 1 | 1 | 263 | 83 | 344 | 4.14e-126 | 362 |
| MsG0380017753.01.T01 | MTR_5g036580 | 61.798 | 267 | 98 | 1 | 1 | 263 | 94 | 360 | 2.96e-125 | 362 |
| MsG0380017753.01.T01 | MTR_4g118030 | 61.338 | 269 | 102 | 2 | 1 | 268 | 77 | 344 | 2.92e-124 | 358 |
| MsG0380017753.01.T01 | MTR_1g089820 | 65.134 | 261 | 90 | 1 | 1 | 261 | 86 | 345 | 2.59e-122 | 353 |
| MsG0380017753.01.T01 | MTR_6g008900 | 60.300 | 267 | 100 | 2 | 1 | 261 | 93 | 359 | 1.20e-120 | 349 |
| MsG0380017753.01.T01 | MTR_4g071620 | 60.300 | 267 | 100 | 2 | 1 | 261 | 93 | 359 | 1.20e-120 | 349 |
| MsG0380017753.01.T01 | MTR_2g461670 | 34.375 | 192 | 115 | 6 | 69 | 259 | 395 | 576 | 3.88e-24 | 101 |
| MsG0380017753.01.T01 | MTR_4g109890 | 34.031 | 191 | 117 | 5 | 69 | 259 | 340 | 521 | 1.36e-22 | 97.1 |
| MsG0380017753.01.T01 | MTR_2g082650 | 30.846 | 201 | 117 | 9 | 69 | 259 | 209 | 397 | 3.83e-20 | 89.4 |
| MsG0380017753.01.T01 | MTR_2g082650 | 30.846 | 201 | 117 | 9 | 69 | 259 | 338 | 526 | 8.46e-20 | 89.0 |
| MsG0380017753.01.T01 | MTR_3g107930 | 28.283 | 198 | 133 | 5 | 69 | 266 | 469 | 657 | 1.40e-19 | 88.6 |
| MsG0380017753.01.T01 | MTR_3g107930 | 28.283 | 198 | 133 | 5 | 69 | 266 | 392 | 580 | 1.57e-19 | 88.2 |
| MsG0380017753.01.T01 | MTR_7g012370 | 31.492 | 181 | 111 | 8 | 69 | 242 | 334 | 508 | 2.09e-19 | 87.8 |
| MsG0380017753.01.T01 | MTR_2g015550 | 31.522 | 184 | 119 | 5 | 69 | 252 | 339 | 515 | 2.32e-19 | 87.8 |
| MsG0380017753.01.T01 | MTR_4g133570 | 30.303 | 198 | 122 | 8 | 69 | 259 | 261 | 449 | 2.91e-19 | 87.4 |
| MsG0380017753.01.T01 | MTR_7g055600 | 27.778 | 198 | 134 | 5 | 69 | 266 | 238 | 426 | 1.89e-18 | 84.7 |
| MsG0380017753.01.T01 | MTR_7g057530 | 27.778 | 198 | 134 | 5 | 69 | 266 | 238 | 426 | 1.89e-18 | 84.7 |
| MsG0380017753.01.T01 | MTR_8g092000 | 27.835 | 194 | 125 | 6 | 69 | 259 | 384 | 565 | 3.52e-18 | 84.3 |
| MsG0380017753.01.T01 | MTR_7g075840 | 26.768 | 198 | 136 | 5 | 69 | 266 | 468 | 656 | 9.08e-18 | 83.2 |
| MsG0380017753.01.T01 | MTR_2g027740 | 29.609 | 179 | 114 | 5 | 69 | 244 | 471 | 640 | 2.22e-17 | 82.0 |
| MsG0380017753.01.T01 | MTR_8g033360 | 30.345 | 145 | 98 | 3 | 69 | 213 | 437 | 578 | 7.06e-17 | 80.5 |
| MsG0380017753.01.T01 | MTR_3g452360 | 26.699 | 206 | 122 | 8 | 69 | 259 | 175 | 366 | 1.66e-15 | 75.9 |
| MsG0380017753.01.T01 | MTR_3g452360 | 26.699 | 206 | 122 | 8 | 69 | 259 | 324 | 515 | 2.55e-15 | 75.9 |
| MsG0380017753.01.T01 | MTR_6g016380 | 27.225 | 191 | 130 | 5 | 69 | 259 | 359 | 540 | 3.12e-15 | 75.5 |
| MsG0380017753.01.T01 | MTR_7g096160 | 27.568 | 185 | 125 | 6 | 67 | 248 | 453 | 631 | 5.67e-15 | 75.1 |
| MsG0380017753.01.T01 | MTR_6g013840 | 28.426 | 197 | 127 | 6 | 69 | 259 | 329 | 517 | 6.26e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017753.01.T01 | AT3G50760 | 75.465 | 269 | 63 | 2 | 1 | 266 | 68 | 336 | 1.55e-153 | 432 |
| MsG0380017753.01.T01 | AT1G19300 | 78.676 | 272 | 56 | 1 | 1 | 270 | 80 | 351 | 1.87e-151 | 427 |
| MsG0380017753.01.T01 | AT4G02130 | 67.045 | 264 | 85 | 2 | 1 | 263 | 81 | 343 | 1.73e-134 | 384 |
| MsG0380017753.01.T01 | AT4G02130 | 67.045 | 264 | 85 | 2 | 1 | 263 | 81 | 343 | 1.73e-134 | 384 |
| MsG0380017753.01.T01 | AT4G02130 | 67.045 | 264 | 85 | 2 | 1 | 263 | 81 | 343 | 1.73e-134 | 384 |
| MsG0380017753.01.T01 | AT3G62660 | 67.050 | 261 | 83 | 2 | 1 | 261 | 98 | 355 | 2.02e-129 | 371 |
| MsG0380017753.01.T01 | AT3G28340 | 64.286 | 266 | 93 | 2 | 1 | 264 | 86 | 351 | 2.07e-129 | 372 |
| MsG0380017753.01.T01 | AT1G24170 | 62.921 | 267 | 95 | 1 | 1 | 263 | 100 | 366 | 2.26e-127 | 367 |
| MsG0380017753.01.T01 | AT3G06260 | 61.509 | 265 | 100 | 2 | 1 | 264 | 81 | 344 | 1.47e-125 | 361 |
| MsG0380017753.01.T01 | AT1G02720 | 64.015 | 264 | 93 | 2 | 1 | 263 | 96 | 358 | 1.79e-125 | 361 |
| MsG0380017753.01.T01 | AT1G02720 | 64.015 | 264 | 93 | 2 | 1 | 263 | 96 | 358 | 1.79e-125 | 361 |
| MsG0380017753.01.T01 | AT1G70090 | 61.423 | 267 | 99 | 1 | 1 | 263 | 97 | 363 | 3.17e-125 | 362 |
| MsG0380017753.01.T01 | AT1G70090 | 61.423 | 267 | 99 | 1 | 1 | 263 | 97 | 363 | 3.17e-125 | 362 |
| MsG0380017753.01.T01 | AT1G13250 | 63.603 | 272 | 96 | 3 | 1 | 270 | 75 | 345 | 3.47e-121 | 350 |
| MsG0380017753.01.T01 | AT1G18580 | 33.152 | 184 | 117 | 4 | 69 | 252 | 342 | 519 | 9.66e-23 | 97.8 |
| MsG0380017753.01.T01 | AT5G54690 | 30.303 | 198 | 122 | 8 | 69 | 259 | 331 | 519 | 5.79e-21 | 92.4 |
| MsG0380017753.01.T01 | AT3G61130 | 29.293 | 198 | 131 | 5 | 69 | 266 | 477 | 665 | 1.33e-20 | 91.7 |
| MsG0380017753.01.T01 | AT3G58790 | 32.500 | 200 | 116 | 9 | 69 | 259 | 204 | 393 | 1.55e-20 | 90.5 |
| MsG0380017753.01.T01 | AT3G58790 | 32.500 | 200 | 116 | 9 | 69 | 259 | 336 | 525 | 1.73e-20 | 91.3 |
| MsG0380017753.01.T01 | AT5G47780 | 31.148 | 183 | 114 | 5 | 69 | 248 | 420 | 593 | 2.34e-20 | 90.9 |
| MsG0380017753.01.T01 | AT3G25140 | 30.256 | 195 | 126 | 5 | 69 | 261 | 363 | 549 | 1.16e-19 | 88.6 |
| MsG0380017753.01.T01 | AT3G01040 | 27.363 | 201 | 124 | 8 | 69 | 259 | 296 | 484 | 5.51e-19 | 86.7 |
| MsG0380017753.01.T01 | AT4G38270 | 29.167 | 192 | 130 | 4 | 69 | 260 | 480 | 665 | 6.31e-19 | 86.7 |
| MsG0380017753.01.T01 | AT3G01040 | 27.363 | 201 | 124 | 8 | 69 | 259 | 329 | 517 | 6.38e-19 | 86.7 |
| MsG0380017753.01.T01 | AT3G01040 | 27.363 | 201 | 124 | 8 | 69 | 259 | 329 | 517 | 6.38e-19 | 86.7 |
| MsG0380017753.01.T01 | AT4G38270 | 29.167 | 192 | 130 | 4 | 69 | 260 | 484 | 669 | 6.76e-19 | 86.7 |
| MsG0380017753.01.T01 | AT5G15470 | 26.368 | 201 | 126 | 8 | 69 | 259 | 329 | 517 | 7.29e-18 | 83.6 |
| MsG0380017753.01.T01 | AT2G30575 | 31.638 | 177 | 112 | 7 | 69 | 242 | 411 | 581 | 1.15e-15 | 77.0 |
| MsG0380017753.01.T01 | AT1G06780 | 29.545 | 176 | 117 | 4 | 69 | 242 | 403 | 573 | 2.45e-15 | 75.9 |
| MsG0380017753.01.T01 | AT1G06780 | 29.545 | 176 | 117 | 4 | 69 | 242 | 390 | 560 | 3.63e-15 | 75.5 |
| MsG0380017753.01.T01 | AT2G46480 | 27.363 | 201 | 135 | 7 | 69 | 268 | 344 | 534 | 4.73e-15 | 75.1 |
| MsG0380017753.01.T01 | AT2G46480 | 27.363 | 201 | 135 | 7 | 69 | 268 | 357 | 547 | 5.83e-15 | 74.7 |
| MsG0380017753.01.T01 | AT2G20810 | 31.818 | 198 | 125 | 6 | 69 | 266 | 342 | 529 | 9.86e-15 | 74.3 |
| MsG0380017753.01.T01 | AT3G02350 | 28.272 | 191 | 128 | 5 | 69 | 259 | 365 | 546 | 4.14e-13 | 69.3 |
| MsG0380017753.01.T01 | AT2G46480 | 24.876 | 201 | 115 | 8 | 69 | 268 | 357 | 522 | 8.02e-11 | 62.4 |
| MsG0380017753.01.T01 | AT2G46480 | 24.876 | 201 | 115 | 8 | 69 | 268 | 344 | 509 | 8.29e-11 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCCTTTGGATGCACTTT+GGG | 0.232277 | 3:-100327559 | MsG0380017753.01.T01:CDS |
| AAATTTGCATTACAATATTC+AGG | 0.250650 | 3:+100327957 | None:intergenic |
| TGCTAGTAGGCCTTGTCCTT+TGG | 0.308844 | 3:-100327571 | MsG0380017753.01.T01:CDS |
| GGTCAAGAATCAAAGGAAAA+TGG | 0.325554 | 3:+100327513 | None:intergenic |
| GAGGATAAGGATCTATGAAT+TGG | 0.326613 | 3:-100327769 | MsG0380017753.01.T01:CDS |
| TGGAGTTTGTAATAGATCAT+AGG | 0.349864 | 3:+100327533 | None:intergenic |
| ACGGAAAGTGGTAAGAGATT+TGG | 0.363144 | 3:+100328077 | None:intergenic |
| CTTGTCCTTTGGATGCACTT+TGG | 0.363222 | 3:-100327560 | MsG0380017753.01.T01:CDS |
| AAGATAAACAACGCGGTTAA+CGG | 0.381313 | 3:+100328058 | None:intergenic |
| AGGTAAGCCTTGGGTTAGAT+TGG | 0.401851 | 3:-100327595 | MsG0380017753.01.T01:CDS |
| GGGTGTGATGGTAATTGATT+TGG | 0.412267 | 3:-100327850 | MsG0380017753.01.T01:CDS |
| ATATTGCTCCGGTGGATCAT+AGG | 0.416962 | 3:-100327710 | MsG0380017753.01.T01:CDS |
| GGGTTAGATTGGATGCTAGT+AGG | 0.429415 | 3:-100327584 | MsG0380017753.01.T01:CDS |
| TATGATTGCGGCGCGTAGAT+TGG | 0.429472 | 3:+100328223 | None:intergenic |
| GTCCTGTGAGTTTATTGCAT+TGG | 0.436349 | 3:-100327626 | MsG0380017753.01.T01:CDS |
| AGGTGTAGAGATGGAATTTG+AGG | 0.450425 | 3:+100328186 | None:intergenic |
| ATCCACCGGAGCAATATTCC+CGG | 0.454348 | 3:+100327716 | None:intergenic |
| AGAGATGGAATTTGAGGTAG+GGG | 0.460127 | 3:+100328192 | None:intergenic |
| TGGAGTTGCAGAAGAGGATA+AGG | 0.463858 | 3:-100327782 | MsG0380017753.01.T01:CDS |
| TGCAATAAACTCACAGGACC+GGG | 0.478583 | 3:+100327630 | None:intergenic |
| GCGTAGATTGGACGCGTTTG+AGG | 0.479876 | 3:+100328235 | None:intergenic |
| CGTTTGAGGAACAAACGAAA+TGG | 0.484529 | 3:+100328249 | None:intergenic |
| GAATTTGAGGTAGGGGAAGG+AGG | 0.485363 | 3:+100328199 | None:intergenic |
| ATGGAATTTGAGGTAGGGGA+AGG | 0.490148 | 3:+100328196 | None:intergenic |
| AGGATAAGGATCTATGAATT+GGG | 0.498741 | 3:-100327768 | MsG0380017753.01.T01:CDS |
| TTTGTGGACATGATGAATGT+TGG | 0.500526 | 3:+100328282 | None:intergenic |
| GGATTATACTGCAAAGATTG+AGG | 0.501023 | 3:-100327811 | MsG0380017753.01.T01:CDS |
| GGAGTGGGAAAGGTAAGCCT+TGG | 0.501618 | 3:-100327605 | MsG0380017753.01.T01:CDS |
| GTAGAGATGGAATTTGAGGT+AGG | 0.502782 | 3:+100328190 | None:intergenic |
| GGAGTTTGTAATAGATCATA+GGG | 0.510024 | 3:+100327534 | None:intergenic |
| ATTGGATGGAGTTGCAGAAG+AGG | 0.511006 | 3:-100327788 | MsG0380017753.01.T01:CDS |
| GAGTGGGAAAGGTAAGCCTT+GGG | 0.511259 | 3:-100327604 | MsG0380017753.01.T01:CDS |
| TTTGATGACACCACTGTCAC+CGG | 0.522736 | 3:-100328164 | MsG0380017753.01.T01:CDS |
| TTATTGCATTGGAGTGGGAA+AGG | 0.522940 | 3:-100327615 | MsG0380017753.01.T01:CDS |
| TGCAAAGATTGAGGATTGGA+TGG | 0.525594 | 3:-100327802 | MsG0380017753.01.T01:CDS |
| TATTGATAAGATTGCTGCCA+TGG | 0.527682 | 3:+100328307 | None:intergenic |
| GATTTGGAACGATGGAGACA+AGG | 0.535423 | 3:-100327834 | MsG0380017753.01.T01:CDS |
| GAAGATTGGTCAAGAATCAA+AGG | 0.537506 | 3:+100327506 | None:intergenic |
| ACAATCGAGAGCTGAACGAA+TGG | 0.541430 | 3:+100328127 | None:intergenic |
| ATGCAATAAACTCACAGGAC+CGG | 0.546673 | 3:+100327629 | None:intergenic |
| ACAACGCGGTTAACGGAAAG+TGG | 0.555082 | 3:+100328065 | None:intergenic |
| TAGAGATGGAATTTGAGGTA+GGG | 0.559827 | 3:+100328191 | None:intergenic |
| TGCCGGGAATATTGCTCCGG+TGG | 0.560558 | 3:-100327718 | MsG0380017753.01.T01:CDS |
| AAATTAGCAGAAACACCGTT+AGG | 0.570033 | 3:-100328002 | MsG0380017753.01.T01:CDS |
| ATTTGGAACGATGGAGACAA+GGG | 0.575264 | 3:-100327833 | MsG0380017753.01.T01:CDS |
| AGGTGGAATCAACATGGACT+TGG | 0.575288 | 3:-100327690 | MsG0380017753.01.T01:CDS |
| GGTGACAGTGGTGTCATCAA+AGG | 0.575295 | 3:+100328166 | None:intergenic |
| ATACTGCAAAGATTGAGGAT+TGG | 0.577186 | 3:-100327806 | MsG0380017753.01.T01:CDS |
| AATGGAGGTTGAGATGAGTC+CGG | 0.579533 | 3:+100328145 | None:intergenic |
| TGTCATCAAAGGTGTAGAGA+TGG | 0.581166 | 3:+100328177 | None:intergenic |
| CAAAGTGCATCCAAAGGACA+AGG | 0.587415 | 3:+100327561 | None:intergenic |
| CTCCAATGCAATAAACTCAC+AGG | 0.589994 | 3:+100327624 | None:intergenic |
| CTTTGTAGAAATCTTCATCC+CGG | 0.594004 | 3:-100327648 | MsG0380017753.01.T01:CDS |
| TGGAATCAACATGGACTTGG+TGG | 0.600755 | 3:-100327687 | MsG0380017753.01.T01:CDS |
| TGAGTTTATTGCATTGGAGT+GGG | 0.602915 | 3:-100327620 | MsG0380017753.01.T01:CDS |
| GTGAGTTTATTGCATTGGAG+TGG | 0.603412 | 3:-100327621 | MsG0380017753.01.T01:CDS |
| TGATTCCACCTATGATCCAC+CGG | 0.603497 | 3:+100327702 | None:intergenic |
| TAGCTACGAGCGTAGTTGAG+AGG | 0.614608 | 3:+100328104 | None:intergenic |
| ATCGAGAGCTGAACGAATGG+AGG | 0.618388 | 3:+100328130 | None:intergenic |
| TTGCTCCGGTGGATCATAGG+TGG | 0.620003 | 3:-100327707 | MsG0380017753.01.T01:CDS |
| GCAAAAGTGAGAGACAAAGA+AGG | 0.625193 | 3:+100327900 | None:intergenic |
| TGGTAATTGATTTGGAACGA+TGG | 0.637912 | 3:-100327842 | MsG0380017753.01.T01:CDS |
| GGGGAAGGAGGTTATGATTG+CGG | 0.641133 | 3:+100328211 | None:intergenic |
| GATCATAGGTGGAATCAACA+TGG | 0.645694 | 3:-100327696 | MsG0380017753.01.T01:CDS |
| CTAGCATCCAATCTAACCCA+AGG | 0.648795 | 3:+100327588 | None:intergenic |
| GAAGGATTAGACCAAAACGA+TGG | 0.667150 | 3:+100327918 | None:intergenic |
| TTTGGAACGATGGAGACAAG+GGG | 0.670581 | 3:-100327832 | MsG0380017753.01.T01:CDS |
| TGAGATGAGTCCGGTGACAG+TGG | 0.670602 | 3:+100328154 | None:intergenic |
| GGTGCCCAAAGTGCATCCAA+AGG | 0.687311 | 3:+100327555 | None:intergenic |
| ACACCCGTGTTAAAATAACA+CGG | 0.716989 | 3:+100327867 | None:intergenic |
| CTGAATCAAGATAAACAACG+CGG | 0.749549 | 3:+100328051 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTGCATTACAATATTC+AGG | + | Chr3:100327866-100327885 | None:intergenic | 20.0% |
| !! | AAATGGAAGAATATGTTTTG+TGG | + | Chr3:100327557-100327576 | None:intergenic | 25.0% |
| AGGATAAGGATCTATGAATT+GGG | - | Chr3:100328052-100328071 | MsG0380017753.01.T01:CDS | 30.0% | |
| GGAGTTTGTAATAGATCATA+GGG | + | Chr3:100328289-100328308 | None:intergenic | 30.0% | |
| TGGAGTTTGTAATAGATCAT+AGG | + | Chr3:100328290-100328309 | None:intergenic | 30.0% | |
| ! | AAAACAGAGTTTTCTCCTAA+CGG | + | Chr3:100327836-100327855 | None:intergenic | 30.0% |
| !!! | AAAGCCGTGTTATTTTAACA+CGG | - | Chr3:100327949-100327968 | MsG0380017753.01.T01:CDS | 30.0% |
| !!! | CTTATTTTACTCCATCGTTT+TGG | - | Chr3:100327891-100327910 | MsG0380017753.01.T01:CDS | 30.0% |
| AAATTAGCAGAAACACCGTT+AGG | - | Chr3:100327818-100327837 | MsG0380017753.01.T01:CDS | 35.0% | |
| AAGATAAACAACGCGGTTAA+CGG | + | Chr3:100327765-100327784 | None:intergenic | 35.0% | |
| ACACCCGTGTTAAAATAACA+CGG | + | Chr3:100327956-100327975 | None:intergenic | 35.0% | |
| ATACTGCAAAGATTGAGGAT+TGG | - | Chr3:100328014-100328033 | MsG0380017753.01.T01:CDS | 35.0% | |
| CTGAATCAAGATAAACAACG+CGG | + | Chr3:100327772-100327791 | None:intergenic | 35.0% | |
| CTTTGTAGAAATCTTCATCC+CGG | - | Chr3:100328172-100328191 | MsG0380017753.01.T01:CDS | 35.0% | |
| GAGGATAAGGATCTATGAAT+TGG | - | Chr3:100328051-100328070 | MsG0380017753.01.T01:CDS | 35.0% | |
| GGATTATACTGCAAAGATTG+AGG | - | Chr3:100328009-100328028 | MsG0380017753.01.T01:CDS | 35.0% | |
| TGAGTTTATTGCATTGGAGT+GGG | - | Chr3:100328200-100328219 | MsG0380017753.01.T01:CDS | 35.0% | |
| TTTGTGGACATGATGAATGT+TGG | + | Chr3:100327541-100327560 | None:intergenic | 35.0% | |
| ! | TAGAGATGGAATTTGAGGTA+GGG | + | Chr3:100327632-100327651 | None:intergenic | 35.0% |
| !! | TGGTAATTGATTTGGAACGA+TGG | - | Chr3:100327978-100327997 | MsG0380017753.01.T01:CDS | 35.0% |
| !!! | AAGCCGTGTTATTTTAACAC+GGG | - | Chr3:100327950-100327969 | MsG0380017753.01.T01:CDS | 35.0% |
| !!! | TTATTTTAACACGGGTGTGA+TGG | - | Chr3:100327958-100327977 | MsG0380017753.01.T01:CDS | 35.0% |
| ACGGAAAGTGGTAAGAGATT+TGG | + | Chr3:100327746-100327765 | None:intergenic | 40.0% | |
| AGGTGTAGAGATGGAATTTG+AGG | + | Chr3:100327637-100327656 | None:intergenic | 40.0% | |
| ATGCAATAAACTCACAGGAC+CGG | + | Chr3:100328194-100328213 | None:intergenic | 40.0% | |
| CCGGCAAAAACAAGCAAAAA+CGG | + | Chr3:100328088-100328107 | None:intergenic | 40.0% | |
| CGTTTGAGGAACAAACGAAA+TGG | + | Chr3:100327574-100327593 | None:intergenic | 40.0% | |
| CTCCAATGCAATAAACTCAC+AGG | + | Chr3:100328199-100328218 | None:intergenic | 40.0% | |
| GAAGGATTAGACCAAAACGA+TGG | + | Chr3:100327905-100327924 | None:intergenic | 40.0% | |
| GATCATAGGTGGAATCAACA+TGG | - | Chr3:100328124-100328143 | MsG0380017753.01.T01:CDS | 40.0% | |
| GCAAAAACAAGCAAAAACGG+CGG | + | Chr3:100328085-100328104 | None:intergenic | 40.0% | |
| GCAAAAGTGAGAGACAAAGA+AGG | + | Chr3:100327923-100327942 | None:intergenic | 40.0% | |
| GGGTGTGATGGTAATTGATT+TGG | - | Chr3:100327970-100327989 | MsG0380017753.01.T01:CDS | 40.0% | |
| GTCCTGTGAGTTTATTGCAT+TGG | - | Chr3:100328194-100328213 | MsG0380017753.01.T01:CDS | 40.0% | |
| GTGAGTTTATTGCATTGGAG+TGG | - | Chr3:100328199-100328218 | MsG0380017753.01.T01:CDS | 40.0% | |
| TGCAAAGATTGAGGATTGGA+TGG | - | Chr3:100328018-100328037 | MsG0380017753.01.T01:CDS | 40.0% | |
| TTATTGCATTGGAGTGGGAA+AGG | - | Chr3:100328205-100328224 | MsG0380017753.01.T01:CDS | 40.0% | |
| TTGTCCTTTGGATGCACTTT+GGG | - | Chr3:100328261-100328280 | MsG0380017753.01.T01:CDS | 40.0% | |
| ! | AGAGATGGAATTTGAGGTAG+GGG | + | Chr3:100327631-100327650 | None:intergenic | 40.0% |
| ! | ATTTGGAACGATGGAGACAA+GGG | - | Chr3:100327987-100328006 | MsG0380017753.01.T01:CDS | 40.0% |
| ! | GTAGAGATGGAATTTGAGGT+AGG | + | Chr3:100327633-100327652 | None:intergenic | 40.0% |
| ! | TGTCATCAAAGGTGTAGAGA+TGG | + | Chr3:100327646-100327665 | None:intergenic | 40.0% |
| !!! | CCGTTTTTGCTTGTTTTTGC+CGG | - | Chr3:100328085-100328104 | MsG0380017753.01.T01:CDS | 40.0% |
| !!! | CGTTTTTGCTTGTTTTTGCC+GGG | - | Chr3:100328086-100328105 | MsG0380017753.01.T01:CDS | 40.0% |
| !!! | CTTGGTGGTGATAATTTTCG+TGG | - | Chr3:100328148-100328167 | MsG0380017753.01.T01:CDS | 40.0% |
| AATGGAGGTTGAGATGAGTC+CGG | + | Chr3:100327678-100327697 | None:intergenic | 45.0% | |
| ACAATCGAGAGCTGAACGAA+TGG | + | Chr3:100327696-100327715 | None:intergenic | 45.0% | |
| AGGTGGAATCAACATGGACT+TGG | - | Chr3:100328130-100328149 | MsG0380017753.01.T01:CDS | 45.0% | |
| ATATTGCTCCGGTGGATCAT+AGG | - | Chr3:100328110-100328129 | MsG0380017753.01.T01:CDS | 45.0% | |
| ATTGGATGGAGTTGCAGAAG+AGG | - | Chr3:100328032-100328051 | MsG0380017753.01.T01:CDS | 45.0% | |
| CAAAGTGCATCCAAAGGACA+AGG | + | Chr3:100328262-100328281 | None:intergenic | 45.0% | |
| CTAGCATCCAATCTAACCCA+AGG | + | Chr3:100328235-100328254 | None:intergenic | 45.0% | |
| CTTGTCCTTTGGATGCACTT+TGG | - | Chr3:100328260-100328279 | MsG0380017753.01.T01:CDS | 45.0% | |
| GGGTTAGATTGGATGCTAGT+AGG | - | Chr3:100328236-100328255 | MsG0380017753.01.T01:CDS | 45.0% | |
| TGATTCCACCTATGATCCAC+CGG | + | Chr3:100328121-100328140 | None:intergenic | 45.0% | |
| TGCAATAAACTCACAGGACC+GGG | + | Chr3:100328193-100328212 | None:intergenic | 45.0% | |
| TGGAATCAACATGGACTTGG+TGG | - | Chr3:100328133-100328152 | MsG0380017753.01.T01:CDS | 45.0% | |
| TGGAGTTGCAGAAGAGGATA+AGG | - | Chr3:100328038-100328057 | MsG0380017753.01.T01:CDS | 45.0% | |
| ! | AGGTAAGCCTTGGGTTAGAT+TGG | - | Chr3:100328225-100328244 | MsG0380017753.01.T01:CDS | 45.0% |
| ! | ATGGAATTTGAGGTAGGGGA+AGG | + | Chr3:100327627-100327646 | None:intergenic | 45.0% |
| ! | GATTTGGAACGATGGAGACA+AGG | - | Chr3:100327986-100328005 | MsG0380017753.01.T01:CDS | 45.0% |
| ! | TTTGATGACACCACTGTCAC+CGG | - | Chr3:100327656-100327675 | MsG0380017753.01.T01:CDS | 45.0% |
| ! | TTTGGAACGATGGAGACAAG+GGG | - | Chr3:100327988-100328007 | MsG0380017753.01.T01:CDS | 45.0% |
| ! | TTTTGCCGGGAATATTGCTC+CGG | - | Chr3:100328099-100328118 | MsG0380017753.01.T01:CDS | 45.0% |
| ACAACGCGGTTAACGGAAAG+TGG | + | Chr3:100327758-100327777 | None:intergenic | 50.0% | |
| ATCCACCGGAGCAATATTCC+CGG | + | Chr3:100328107-100328126 | None:intergenic | 50.0% | |
| ATCGAGAGCTGAACGAATGG+AGG | + | Chr3:100327693-100327712 | None:intergenic | 50.0% | |
| GAGTGGGAAAGGTAAGCCTT+GGG | - | Chr3:100328216-100328235 | MsG0380017753.01.T01:CDS | 50.0% | |
| GGGGAAGGAGGTTATGATTG+CGG | + | Chr3:100327612-100327631 | None:intergenic | 50.0% | |
| TAGCTACGAGCGTAGTTGAG+AGG | + | Chr3:100327719-100327738 | None:intergenic | 50.0% | |
| TATGATTGCGGCGCGTAGAT+TGG | + | Chr3:100327600-100327619 | None:intergenic | 50.0% | |
| ! | GAATTTGAGGTAGGGGAAGG+AGG | + | Chr3:100327624-100327643 | None:intergenic | 50.0% |
| ! | TGCTAGTAGGCCTTGTCCTT+TGG | - | Chr3:100328249-100328268 | MsG0380017753.01.T01:CDS | 50.0% |
| !! | GGTGACAGTGGTGTCATCAA+AGG | + | Chr3:100327657-100327676 | None:intergenic | 50.0% |
| GCGTAGATTGGACGCGTTTG+AGG | + | Chr3:100327588-100327607 | None:intergenic | 55.0% | |
| GGAGTGGGAAAGGTAAGCCT+TGG | - | Chr3:100328215-100328234 | MsG0380017753.01.T01:CDS | 55.0% | |
| GGTGCCCAAAGTGCATCCAA+AGG | + | Chr3:100328268-100328287 | None:intergenic | 55.0% | |
| TGAGATGAGTCCGGTGACAG+TGG | + | Chr3:100327669-100327688 | None:intergenic | 55.0% | |
| TTGCTCCGGTGGATCATAGG+TGG | - | Chr3:100328113-100328132 | MsG0380017753.01.T01:CDS | 55.0% | |
| TGCCGGGAATATTGCTCCGG+TGG | - | Chr3:100328102-100328121 | MsG0380017753.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 100327515 | 100328327 | 100327515 | ID=MsG0380017753.01;Name=MsG0380017753.01 |
| Chr3 | mRNA | 100327515 | 100328327 | 100327515 | ID=MsG0380017753.01.T01;Parent=MsG0380017753.01;Name=MsG0380017753.01.T01;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|270 |
| Chr3 | exon | 100327515 | 100328327 | 100327515 | ID=MsG0380017753.01.T01:exon:35798;Parent=MsG0380017753.01.T01 |
| Chr3 | CDS | 100327515 | 100328327 | 100327515 | ID=MsG0380017753.01.T01:cds;Parent=MsG0380017753.01.T01 |
| Gene Sequence |
| Protein sequence |
