AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017841.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017841.01.T01 MTR_3g113720 94.896 529 21 1 1 523 1 529 0.0 1005
MsG0380017841.01.T01 MTR_8g075990 59.417 515 200 2 14 522 23 534 0.0 585
MsG0380017841.01.T01 MTR_5g085730 41.614 471 255 10 58 513 32 497 9.75e-119 360
MsG0380017841.01.T01 MTR_8g099410 43.284 469 246 11 58 512 29 491 6.23e-118 357
MsG0380017841.01.T01 MTR_8g099410 43.284 469 246 11 58 512 29 491 9.41e-117 358
MsG0380017841.01.T01 MTR_4g074960 40.000 475 260 8 58 515 29 495 1.32e-115 355
MsG0380017841.01.T01 MTR_5g093590 40.717 474 254 11 58 512 35 500 1.43e-111 341
MsG0380017841.01.T01 MTR_3g080190 40.340 471 261 10 58 513 41 506 6.64e-111 340
MsG0380017841.01.T01 MTR_5g009970 39.744 468 255 7 58 513 42 494 3.29e-110 337
MsG0380017841.01.T01 MTR_5g010000 40.890 472 252 8 58 517 41 497 1.00e-106 328
MsG0380017841.01.T01 MTR_3g105230 38.987 454 249 8 58 500 31 467 1.89e-106 327
MsG0380017841.01.T01 MTR_1g037340 41.365 469 248 11 58 512 26 481 3.53e-106 326
MsG0380017841.01.T01 MTR_3g080810 39.446 469 259 9 56 510 34 491 9.75e-104 320
MsG0380017841.01.T01 MTR_3g117500 39.873 474 258 10 56 513 23 485 5.69e-103 318
MsG0380017841.01.T01 MTR_3g023740 38.675 468 259 8 58 514 31 481 7.67e-102 315
MsG0380017841.01.T01 MTR_8g104820 38.784 477 253 12 56 510 29 488 3.25e-96 301
MsG0380017841.01.T01 MTR_2g028480 38.868 530 276 15 14 512 77 589 4.61e-96 304
MsG0380017841.01.T01 MTR_4g035955 38.004 471 263 10 53 510 10 464 3.56e-95 297
MsG0380017841.01.T01 MTR_5g009970 38.407 427 237 6 98 513 9 420 8.72e-95 295
MsG0380017841.01.T01 MTR_3g010330 39.362 470 251 12 58 510 26 478 8.27e-94 294
MsG0380017841.01.T01 MTR_4g035930 37.124 466 264 9 58 510 16 465 2.27e-91 287
MsG0380017841.01.T01 MTR_3g082440 36.398 533 294 16 14 518 82 597 5.40e-87 281
MsG0380017841.01.T01 MTR_5g009970 37.500 408 229 6 117 513 1 393 5.50e-86 271
MsG0380017841.01.T01 MTR_1g088190 36.025 483 265 11 51 519 33 485 7.53e-85 271
MsG0380017841.01.T01 MTR_4g035975 35.983 478 267 13 56 510 26 487 4.36e-84 269
MsG0380017841.01.T01 MTR_3g090540 33.962 530 292 18 18 513 76 581 1.09e-77 255
MsG0380017841.01.T01 MTR_5g009970 36.607 336 187 6 189 513 5 325 2.22e-61 205
MsG0380017841.01.T01 MTR_1g088190 39.557 316 158 8 51 362 33 319 1.23e-58 198
MsG0380017841.01.T01 MTR_1g037320 45.912 159 86 0 117 275 1 159 7.09e-38 141
MsG0380017841.01.T01 MTR_4g128810 36.943 157 92 3 373 522 187 343 4.94e-21 95.1
MsG0380017841.01.T01 MTR_7g108925 29.697 165 105 3 366 520 43 206 6.64e-18 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017841.01.T01 AT1G75680 65.595 529 170 6 1 522 1 524 0.0 655
MsG0380017841.01.T01 AT1G19940 64.773 528 167 5 1 522 1 515 0.0 652
MsG0380017841.01.T01 AT1G19940 64.773 528 167 5 1 522 1 515 0.0 652
MsG0380017841.01.T01 AT1G19940 65.957 423 131 4 1 423 1 410 0.0 551
MsG0380017841.01.T01 AT4G11050 42.857 476 252 10 58 519 27 496 1.22e-121 368
MsG0380017841.01.T01 AT4G11050 43.067 476 251 11 58 519 27 496 7.00e-121 369
MsG0380017841.01.T01 AT4G11050 43.067 476 251 11 58 519 27 496 8.55e-121 369
MsG0380017841.01.T01 AT1G64390 41.545 479 260 10 58 522 26 498 4.76e-118 361
MsG0380017841.01.T01 AT2G32990 40.466 472 253 11 58 510 40 502 5.42e-114 348
MsG0380017841.01.T01 AT2G44540 41.438 473 255 8 52 512 28 490 7.90e-111 338
MsG0380017841.01.T01 AT2G44550 42.463 471 246 10 53 510 29 487 2.16e-110 337
MsG0380017841.01.T01 AT2G44560 42.072 473 252 9 52 512 28 490 1.86e-108 332
MsG0380017841.01.T01 AT1G48930 42.431 469 246 8 58 510 31 491 1.30e-106 332
MsG0380017841.01.T01 AT2G44570 39.915 471 260 10 55 512 31 491 2.74e-103 319
MsG0380017841.01.T01 AT4G23560 40.127 471 256 7 57 516 23 478 4.37e-103 318
MsG0380017841.01.T01 AT1G71380 40.169 473 254 10 52 510 19 476 4.37e-101 313
MsG0380017841.01.T01 AT1G02800 39.413 477 257 12 55 515 41 501 6.11e-101 313
MsG0380017841.01.T01 AT4G09740 40.000 470 256 8 58 516 24 478 1.05e-100 312
MsG0380017841.01.T01 AT4G02290 38.889 468 262 10 56 510 51 507 1.06e-100 313
MsG0380017841.01.T01 AT3G43860 39.270 466 255 9 58 512 35 483 8.32e-100 310
MsG0380017841.01.T01 AT3G43860 39.270 466 255 9 58 512 35 483 8.32e-100 310
MsG0380017841.01.T01 AT1G22880 39.873 474 256 10 58 517 25 483 1.29e-99 309
MsG0380017841.01.T01 AT4G39010 38.217 471 265 10 56 510 28 488 3.02e-97 303
MsG0380017841.01.T01 AT1G70710 37.421 473 260 10 56 509 27 482 8.24e-97 302
MsG0380017841.01.T01 AT1G23210 36.864 472 264 10 56 509 27 482 1.78e-95 299
MsG0380017841.01.T01 AT4G39000 36.975 476 274 10 51 510 19 484 7.69e-94 295
MsG0380017841.01.T01 AT5G49720 37.736 530 282 15 14 512 74 586 4.19e-90 289
MsG0380017841.01.T01 AT2G44570 43.207 368 197 7 55 420 31 388 7.55e-90 281
MsG0380017841.01.T01 AT4G24260 39.877 489 254 15 58 516 109 587 3.13e-86 278
MsG0380017841.01.T01 AT4G38990 35.124 484 277 12 51 510 17 487 1.89e-84 270
MsG0380017841.01.T01 AT1G65610 33.837 529 306 14 14 515 82 593 1.31e-83 272
MsG0380017841.01.T01 AT4G39010 39.730 370 207 8 56 419 28 387 9.97e-83 262
MsG0380017841.01.T01 AT1G22880 38.406 414 227 9 117 517 1 399 1.15e-81 260
MsG0380017841.01.T01 AT4G02290 36.946 406 233 9 117 510 1 395 1.42e-77 249
MsG0380017841.01.T01 AT1G22880 44.728 313 155 7 58 366 25 323 9.32e-71 229
MsG0380017841.01.T01 AT4G24260 42.377 387 192 13 58 420 109 488 1.72e-70 233
MsG0380017841.01.T01 AT4G24260 44.164 317 150 11 58 352 109 420 2.05e-63 214
MsG0380017841.01.T01 AT4G38990 36.311 347 183 7 51 392 17 330 1.59e-59 201

Find 149 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATTGCGTTTGTGATTC+TGG 0.168400 3:-101275671 MsG0380017841.01.T01:CDS
TATTATAACTCAACTGGATA+TGG 0.212670 3:-101274476 MsG0380017841.01.T01:CDS
TAATGTCTATATTTGGAAAT+AGG 0.213571 3:+101275922 None:intergenic
TAATAACACATTTCTTATTT+AGG 0.225442 3:-101275872 MsG0380017841.01.T01:five_prime_UTR
TTTATATAGATGGTCTGATA+TGG 0.236900 3:-101273277 MsG0380017841.01.T01:intron
GAGCATAGTCTTCTCCATTT+TGG 0.237012 3:+101274378 None:intergenic
ACAACGATAATGTCTATATT+TGG 0.241703 3:+101275915 None:intergenic
ATGAGACTTACATTGATTCT+AGG 0.242483 3:-101272506 MsG0380017841.01.T01:CDS
TCCCCATTTCTCGCCGCAAC+CGG 0.267321 3:-101276080 MsG0380017841.01.T01:five_prime_UTR
CTTTCAAGTTCATATGGTTC+TGG 0.277266 3:-101273710 MsG0380017841.01.T01:CDS
GGAGAAGACTATGCTCAATT+TGG 0.277714 3:-101274371 MsG0380017841.01.T01:CDS
GGAGAATGTTCTGTATATTC+AGG 0.309453 3:-101274885 MsG0380017841.01.T01:intron
TCGTGGGCAATTCTAGAATA+TGG 0.312428 3:-101274995 MsG0380017841.01.T01:CDS
AGTTAGCAATGTGTTTGTTT+GGG 0.312631 3:-101275831 MsG0380017841.01.T01:five_prime_UTR
AGCAATGGCATCAGCATCTT+TGG 0.319777 3:-101274618 MsG0380017841.01.T01:CDS
GGAGGACCGGGAACCGGTTC+GGG 0.321906 3:+101275583 None:intergenic
TTTGTGGCTGTTGGAGAGTC+TGG 0.335910 3:+101273638 None:intergenic
GAGAGGGGATTCGGCTCTTA+AGG 0.338315 3:-101275116 MsG0380017841.01.T01:CDS
CAGTATGTGACTGGCCAAAA+TGG 0.350134 3:-101274392 MsG0380017841.01.T01:CDS
GCCGGGGATCACATGAAGTT+TGG 0.352977 3:-101275049 MsG0380017841.01.T01:CDS
CGGTTCGGGTTTATCTGAAT+TGG 0.356861 3:+101275597 None:intergenic
GAGTTAGCAATGTGTTTGTT+TGG 0.361356 3:-101275832 MsG0380017841.01.T01:five_prime_UTR
GATAAACCCGAACCGGTTCC+CGG 0.365719 3:-101275589 MsG0380017841.01.T01:CDS
GACCCGGTTGCGGCGAGAAA+TGG 0.366071 3:+101276077 None:intergenic
TTATAATATGTCGCAACTTC+AGG 0.368599 3:+101274491 None:intergenic
TGTCCCAACTGAACCAGGTT+GGG 0.383206 3:+101274345 None:intergenic
AGGAGGACCGGGAACCGGTT+CGG 0.385546 3:+101275582 None:intergenic
TCTATATTTGGAAATAGGTT+TGG 0.392794 3:+101275927 None:intergenic
ACCCGGTTGCGGCGAGAAAT+GGG 0.395938 3:+101276078 None:intergenic
ATTATAACTCAACTGGATAT+GGG 0.400764 3:-101274475 MsG0380017841.01.T01:CDS
GGAGAGAATGGAGTGGAAAA+TGG 0.407612 3:+101276100 None:intergenic
AAGGGCCTTTCAAGTTCATA+TGG 0.416309 3:-101273716 MsG0380017841.01.T01:CDS
TCCCACAATTTGTGCATCAC+AGG 0.420681 3:-101272646 MsG0380017841.01.T01:CDS
TCTCGTCAATGCTCATCCTT+CGG 0.427984 3:-101274906 MsG0380017841.01.T01:CDS
GTCTGATATGGGTGAGTGAA+TGG 0.429335 3:-101273265 MsG0380017841.01.T01:CDS
AATAAGTTGGAGAGGGGATT+CGG 0.430660 3:-101275125 MsG0380017841.01.T01:CDS
AATGGATGCTGTTGGCCAAT+TGG 0.431030 3:-101274966 MsG0380017841.01.T01:CDS
TTCAGCTGCAACATCTGATC+CGG 0.435202 3:+101274649 None:intergenic
TTACTCTGTCGTTGTGTTGG+AGG 0.441192 3:+101276032 None:intergenic
GCGACATATTATAACTCAAC+TGG 0.441782 3:-101274482 MsG0380017841.01.T01:CDS
AGAGTAAACTACCTAGTTGT+TGG 0.443367 3:-101276016 MsG0380017841.01.T01:five_prime_UTR
CCCCATTTCTCGCCGCAACC+GGG 0.443783 3:-101276079 MsG0380017841.01.T01:five_prime_UTR
ATCAATAGCACCAGGAGGAC+CGG 0.444497 3:+101275570 None:intergenic
CCGAATCCCAATGTAGCTAC+TGG 0.444550 3:-101272555 MsG0380017841.01.T01:CDS
GTCGTTGTGTTGGAGGATAA+TGG 0.445442 3:+101276039 None:intergenic
GTTGCAAGGATGGGTGGCAG+TGG 0.446186 3:-101272593 MsG0380017841.01.T01:CDS
TCTAGAATATGGAGATCAAA+TGG 0.446875 3:-101274984 MsG0380017841.01.T01:CDS
ATCTAGAGTAAGCTTCTTCA+AGG 0.446995 3:-101273741 MsG0380017841.01.T01:CDS
AGCTGAAACTGCAGCAGCAA+TGG 0.448020 3:-101274633 MsG0380017841.01.T01:CDS
AAGTTTAGTCACCACATCTT+CGG 0.449573 3:-101272421 MsG0380017841.01.T01:CDS
TCGAGACTTTGCCAGATCTC+AGG 0.456961 3:-101273123 MsG0380017841.01.T01:CDS
TTATATAGATGGTCTGATAT+GGG 0.457104 3:-101273276 MsG0380017841.01.T01:intron
AGTTTACTCTGTCGTTGTGT+TGG 0.459166 3:+101276029 None:intergenic
AGTTGGGACAACAAGCTTGC+CGG 0.460646 3:-101274332 MsG0380017841.01.T01:CDS
CAACACTTGTGATCTGCAAC+AGG 0.466398 3:+101274731 None:intergenic
GCACCAGGAGGACCGGGAAC+CGG 0.466625 3:+101275577 None:intergenic
AATCTTGTGCTGGTTCCAAT+TGG 0.470000 3:+101274951 None:intergenic
TAGAGAACAACAAAATAAGT+TGG 0.470544 3:-101275138 MsG0380017841.01.T01:CDS
CCAGTAGCTACATTGGGATT+CGG 0.470664 3:+101272555 None:intergenic
CTCAATTTGGAAGCCCAACC+TGG 0.472205 3:-101274358 MsG0380017841.01.T01:CDS
GCTAAGAATGCAGATGCAAC+AGG 0.473355 3:+101273227 None:intergenic
CTTGTTGTCCCAACTGAACC+AGG 0.475271 3:+101274340 None:intergenic
AGGATATGTTCACTTGTAAG+AGG 0.480764 3:+101274675 None:intergenic
CAAAAGGAGGATGTTGTGGT+TGG 0.485199 3:-101275693 MsG0380017841.01.T01:CDS
TCAATGCAGTTTCAGATCGA+TGG 0.485525 3:+101275953 None:intergenic
TACTGCCTCGGTGCTATCGT+GGG 0.488542 3:-101275011 MsG0380017841.01.T01:CDS
GAACCGGTTCCCGGTCCTCC+TGG 0.489943 3:-101275580 MsG0380017841.01.T01:CDS
GTAGCTACTGGAGCACTTGT+TGG 0.494083 3:-101272543 MsG0380017841.01.T01:CDS
GTAAGCTTCTTCAAGGCAAA+GGG 0.494576 3:-101273734 MsG0380017841.01.T01:CDS
AACAACAAAATAAGTTGGAG+AGG 0.494998 3:-101275133 MsG0380017841.01.T01:CDS
CAATTCAGATAAACCCGAAC+CGG 0.495025 3:-101275596 MsG0380017841.01.T01:CDS
CAAAAGGAATGTATGATGCC+GGG 0.495516 3:-101275066 MsG0380017841.01.T01:CDS
GCAGATTTAGATCTAACAAA+AGG 0.496053 3:-101275082 MsG0380017841.01.T01:CDS
TCGAAGATCTGATGGTTTGA+AGG 0.496987 3:+101273142 None:intergenic
ATGAATGCATACCTGAGATC+TGG 0.498951 3:+101273112 None:intergenic
GAAGCCCAACCTGGTTCAGT+TGG 0.502198 3:-101274349 MsG0380017841.01.T01:CDS
GTGATTCTGGCTCTTGTGGT+CGG 0.505371 3:-101275658 MsG0380017841.01.T01:CDS
AAGCCCAACCTGGTTCAGTT+GGG 0.506162 3:-101274348 MsG0380017841.01.T01:CDS
ACAAAAGGAATGTATGATGC+CGG 0.506505 3:-101275067 MsG0380017841.01.T01:CDS
TATAACAGTGCTGTCATAGT+TGG 0.509805 3:-101272453 MsG0380017841.01.T01:CDS
TGCAACATCTGATCCGGGAC+AGG 0.511750 3:+101274655 None:intergenic
GATCTAATCCGACCCGGTTG+CGG 0.514284 3:+101276067 None:intergenic
GCTACTGGAGCACTTGTTGG+TGG 0.515300 3:-101272540 MsG0380017841.01.T01:CDS
ACCTGTAGCATGGTAGAGCC+AGG 0.516769 3:+101274430 None:intergenic
TTGTCCCAACTGAACCAGGT+TGG 0.523981 3:+101274344 None:intergenic
AACCAGCACAAGATTCTCTC+AGG 0.525412 3:-101274943 MsG0380017841.01.T01:CDS
CCCTGTGATGCACAAATTGT+GGG 0.525777 3:+101272645 None:intergenic
TAGTTTAGGAGAAGGATTGA+AGG 0.527196 3:+101272397 None:intergenic
CCCACAATTTGTGCATCACA+GGG 0.528697 3:-101272645 MsG0380017841.01.T01:CDS
GGCGAGAAATGGGGAGAGAA+TGG 0.529800 3:+101276088 None:intergenic
AGCTCTTCATACCTGAGTTC+CGG 0.531252 3:+101274313 None:intergenic
CACCTGAGAGAATCTTGTGC+TGG 0.533013 3:+101274941 None:intergenic
AGTGCTCCAGTAGCTACATT+GGG 0.536888 3:+101272549 None:intergenic
CAACAAGCTTGCCGGAACTC+AGG 0.539769 3:-101274324 MsG0380017841.01.T01:intron
TCCTACCTTCAGTATGTGAC+TGG 0.540197 3:-101274401 MsG0380017841.01.T01:CDS
AAGTGCTCCAGTAGCTACAT+TGG 0.543749 3:+101272548 None:intergenic
GCAAAGTCTCGAAGATCTGA+TGG 0.544007 3:+101273134 None:intergenic
TTACTGCCTCGGTGCTATCG+TGG 0.544348 3:-101275012 MsG0380017841.01.T01:CDS
ATGTAAGTCTCATTTAAGAA+AGG 0.549620 3:+101272516 None:intergenic
GTTTGTGATTCTGGCTCTTG+TGG 0.550904 3:-101275662 MsG0380017841.01.T01:CDS
AGTAAGCTTCTTCAAGGCAA+AGG 0.552883 3:-101273735 MsG0380017841.01.T01:CDS
ACCTGGCTCTACCATGCTAC+AGG 0.553331 3:-101274431 MsG0380017841.01.T01:CDS
TCCCTGTGATGCACAAATTG+TGG 0.555539 3:+101272644 None:intergenic
ACCAAACTTCATGTGATCCC+CGG 0.556653 3:+101275048 None:intergenic
TCAATAGCACCAGGAGGACC+GGG 0.568834 3:+101275571 None:intergenic
GGATTGAAGGGCCGAAGATG+TGG 0.569561 3:+101272410 None:intergenic
GTGTTGGAGGATAATGGATA+CGG 0.570732 3:+101276045 None:intergenic
CTGTTGCAGATCACAAGTGT+TGG 0.571688 3:-101274730 MsG0380017841.01.T01:CDS
CAAGTGAACATATCCTGTCC+CGG 0.572365 3:-101274668 MsG0380017841.01.T01:CDS
ATTTCTCGCCGCAACCGGGT+CGG 0.573247 3:-101276075 MsG0380017841.01.T01:five_prime_UTR
AATGGTAACGATCGATATCG+CGG 0.573278 3:+101276118 None:intergenic
ACAGCACTGTTATATGTGCT+TGG 0.573334 3:+101272462 None:intergenic
GGGGATTCGGCTCTTAAGGA+TGG 0.573397 3:-101275112 MsG0380017841.01.T01:CDS
CAGAACCATATGAACTTGAA+AGG 0.573409 3:+101273711 None:intergenic
GTTAGCAATGTGTTTGTTTG+GGG 0.576483 3:-101275830 MsG0380017841.01.T01:five_prime_UTR
AGTTTAGGAGAAGGATTGAA+GGG 0.578741 3:+101272398 None:intergenic
ACATACTATAGTTTAGGAGA+AGG 0.578891 3:+101272389 None:intergenic
TTATAACTCAACTGGATATG+GGG 0.582247 3:-101274474 MsG0380017841.01.T01:CDS
TAAACTACCTAGTTGTTGGT+TGG 0.582636 3:-101276012 MsG0380017841.01.T01:five_prime_UTR
AAGACCACACATTACAGCCT+CGG 0.582653 3:+101273664 None:intergenic
ACAACAAAATAAGTTGGAGA+GGG 0.586545 3:-101275132 MsG0380017841.01.T01:CDS
AGCTACATTGGGATTCGGAT+CGG 0.590300 3:+101272560 None:intergenic
AATTGTTTGAAATCGTTAAG+CGG 0.591250 3:+101275978 None:intergenic
TCTAGGAACAATTCTATGCA+AGG 0.591369 3:-101272489 MsG0380017841.01.T01:CDS
TCAGCTGCAACATCTGATCC+GGG 0.591508 3:+101274650 None:intergenic
AACAGCACCAACCAACAACT+AGG 0.593332 3:+101276005 None:intergenic
CGTTCCTCAGTAATTAACTC+AGG 0.597205 3:+101274701 None:intergenic
AGATCAAAAGGAGGATGTTG+TGG 0.599433 3:-101275697 MsG0380017841.01.T01:CDS
CCCGGTTGCGGCGAGAAATG+GGG 0.601279 3:+101276079 None:intergenic
GGATATGTTCACTTGTAAGA+GGG 0.601952 3:+101274676 None:intergenic
CAGCACAAGATTCTCTCAGG+TGG 0.615600 3:-101274940 MsG0380017841.01.T01:CDS
TTTGGCCAGTCACATACTGA+AGG 0.616951 3:+101274396 None:intergenic
AGGAATCATCACCTGTAGCA+TGG 0.618916 3:+101274420 None:intergenic
AAACTGGTTGCAAGGATGGG+TGG 0.621140 3:-101272599 MsG0380017841.01.T01:CDS
AAAAGGAATGTATGATGCCG+GGG 0.628087 3:-101275065 MsG0380017841.01.T01:CDS
ATGGTAACGATCGATATCGC+GGG 0.628262 3:+101276119 None:intergenic
GGAGATCAAATGGATGCTGT+TGG 0.641613 3:-101274974 MsG0380017841.01.T01:CDS
TCCGCCGAGGCTGTAATGTG+TGG 0.641659 3:-101273668 MsG0380017841.01.T01:CDS
ACCGAGGCAGTAAAAGCCAT+AGG 0.648080 3:+101275022 None:intergenic
CAACAAAATAAGTTGGAGAG+GGG 0.657191 3:-101275131 MsG0380017841.01.T01:CDS
ATATACAGAACATTCTCCGA+AGG 0.657437 3:+101274890 None:intergenic
GCCAGTCACATACTGAAGGT+AGG 0.663540 3:+101274400 None:intergenic
GATATGTTCACTTGTAAGAG+GGG 0.671374 3:+101274677 None:intergenic
ACCACACATTACAGCCTCGG+CGG 0.674391 3:+101273667 None:intergenic
GATACGGATCTAATCCGACC+CGG 0.697537 3:+101276061 None:intergenic
GAAATGGGGAGAGAATGGAG+TGG 0.703451 3:+101276093 None:intergenic
TAGACCTGAGTTAATTACTG+AGG 0.715470 3:-101274705 MsG0380017841.01.T01:CDS
AAATTATAGAAAATCCGCCG+AGG 0.730261 3:-101273681 MsG0380017841.01.T01:CDS
AATTGCCCACGATAGCACCG+AGG 0.782103 3:+101275006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG - Chr3:101274481-101274500 MsG0380017841.01.T01:CDS 10.0%
!! ATAAAAAAAAAAAAACACTT+CGG + Chr3:101274314-101274333 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - Chr3:101274480-101274499 MsG0380017841.01.T01:CDS 10.0%
!! TAGAAATATATTACTAAAAA+TGG + Chr3:101275187-101275206 None:intergenic 10.0%
!! TATAAAACATTTAATGTTAT+TGG + Chr3:101275584-101275603 None:intergenic 10.0%
!!! GAGTTTTTTTTTTTTTTTTT+GGG - Chr3:101275499-101275518 MsG0380017841.01.T01:intron 10.0%
!! AATTAGAGTTATATTGTATT+GGG - Chr3:101274546-101274565 MsG0380017841.01.T01:CDS 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - Chr3:101274482-101274501 MsG0380017841.01.T01:CDS 15.0%
!! ATTTATCTGACATTAAATAA+AGG - Chr3:101275628-101275647 MsG0380017841.01.T01:CDS 15.0%
!! GTAAATTCTTCTTATATTAA+GGG + Chr3:101275462-101275481 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG - Chr3:101274545-101274564 MsG0380017841.01.T01:CDS 15.0%
!! TTAATTAGTATAAAATTGAG+TGG - Chr3:101275541-101275560 MsG0380017841.01.T01:CDS 15.0%
!! TTTAGTATAAATTTACATGT+AGG + Chr3:101275607-101275626 None:intergenic 15.0%
!! TTTATCTGACATTAAATAAA+GGG - Chr3:101275629-101275648 MsG0380017841.01.T01:CDS 15.0%
!!! GGAGTTTTTTTTTTTTTTTT+TGG - Chr3:101275498-101275517 MsG0380017841.01.T01:intron 15.0%
!!! TAATAACACATTTCTTATTT+AGG - Chr3:101272648-101272667 MsG0380017841.01.T01:CDS 15.0%
!!! TTCTTTTTCTTTTATATAGA+TGG - Chr3:101275233-101275252 MsG0380017841.01.T01:intron 15.0%
!!! TTTAATGTTATTGGTTTAAT+TGG + Chr3:101275575-101275594 None:intergenic 15.0%
!! AAAGTGGAATATATTGTATT+GGG - Chr3:101274505-101274524 MsG0380017841.01.T01:CDS 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - Chr3:101274578-101274597 MsG0380017841.01.T01:CDS 20.0%
!! CTAATCAGATTATAAGTTAA+GGG + Chr3:101275112-101275131 None:intergenic 20.0%
!! GGTAAATTCTTCTTATATTA+AGG + Chr3:101275463-101275482 None:intergenic 20.0%
!! TAATGTCTATATTTGGAAAT+AGG + Chr3:101272601-101272620 None:intergenic 20.0%
!!! AAAACAGTTATTTACTTTTG+CGG - Chr3:101273974-101273993 MsG0380017841.01.T01:intron 20.0%
!!! AATAAGTAGAAGTATCATTT+AGG + Chr3:101274406-101274425 None:intergenic 20.0%
!!! AATAGTTTTATTAGATAGTC+TGG - Chr3:101275139-101275158 MsG0380017841.01.T01:CDS 20.0%
!!! ATATTCCTTTTTTTCATTCT+CGG - Chr3:101273031-101273050 MsG0380017841.01.T01:intron 20.0%
!!! ATCTGAATCACATTTTATAT+TGG + Chr3:101275357-101275376 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - Chr3:101274615-101274634 MsG0380017841.01.T01:CDS 20.0%
!!! TCTGAATCACATTTTATATT+GGG + Chr3:101275356-101275375 None:intergenic 20.0%
! AAATGCAAAAAACAGAGTTT+GGG + Chr3:101272766-101272785 None:intergenic 25.0%
! AAATTTGTGTATTCAATGCA+TGG - Chr3:101275001-101275020 MsG0380017841.01.T01:CDS 25.0%
! AATGCTTTCATGTATATACT+AGG - Chr3:101274674-101274693 MsG0380017841.01.T01:CDS 25.0%
! AATTTGTGTATTCAATGCAT+GGG - Chr3:101275002-101275021 MsG0380017841.01.T01:CDS 25.0%
! ACAACGATAATGTCTATATT+TGG + Chr3:101272608-101272627 None:intergenic 25.0%
! ACGCACAATTTCTTATAAAA+GGG - Chr3:101275723-101275742 MsG0380017841.01.T01:exon 25.0%
! ATGCTTTCATGTATATACTA+GGG - Chr3:101274675-101274694 MsG0380017841.01.T01:CDS 25.0%
! ATGTAAGTCTCATTTAAGAA+AGG + Chr3:101276007-101276026 None:intergenic 25.0%
! ATTATAACTCAACTGGATAT+GGG - Chr3:101274045-101274064 MsG0380017841.01.T01:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG - Chr3:101274504-101274523 MsG0380017841.01.T01:CDS 25.0%
! GCTAATCAGATTATAAGTTA+AGG + Chr3:101275113-101275132 None:intergenic 25.0%
! TACGCACAATTTCTTATAAA+AGG - Chr3:101275722-101275741 MsG0380017841.01.T01:exon 25.0%
! TAGAATTTGGAAACAAGATT+CGG + Chr3:101274234-101274253 None:intergenic 25.0%
! TAGAGAACAACAAAATAAGT+TGG - Chr3:101273382-101273401 MsG0380017841.01.T01:intron 25.0%
! TATTATAACTCAACTGGATA+TGG - Chr3:101274044-101274063 MsG0380017841.01.T01:intron 25.0%
! TCTATATTTGGAAATAGGTT+TGG + Chr3:101272596-101272615 None:intergenic 25.0%
! TTAATAATCCTTCTTAATGC+AGG - Chr3:101274749-101274768 MsG0380017841.01.T01:intron 25.0%
! TTATATAGATGGTCTGATAT+GGG - Chr3:101275244-101275263 MsG0380017841.01.T01:intron 25.0%
! TTCATTTATCAAAATCGATG+TGG - Chr3:101273754-101273773 MsG0380017841.01.T01:intron 25.0%
! TTGTGAAATGCAAGAAATAA+AGG + Chr3:101273060-101273079 None:intergenic 25.0%
! TTTATATAGATGGTCTGATA+TGG - Chr3:101275243-101275262 MsG0380017841.01.T01:intron 25.0%
!! AATGATCGTAGTTTAGAATT+TGG + Chr3:101274247-101274266 None:intergenic 25.0%
!! AATTGTTTGAAATCGTTAAG+CGG + Chr3:101272545-101272564 None:intergenic 25.0%
!!! AAGAAATTGTGCGTATTTTT+TGG + Chr3:101275717-101275736 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - Chr3:101274614-101274633 MsG0380017841.01.T01:CDS 25.0%
!!! TAATGTTTTAAAAACCGAAC+TGG - Chr3:101273148-101273167 MsG0380017841.01.T01:CDS 25.0%
!!! TGGTTTTGAAAACATTGTTT+TGG - Chr3:101273287-101273306 MsG0380017841.01.T01:intron 25.0%
AAAACTTGTCTAATACTTCC+AGG - Chr3:101275788-101275807 MsG0380017841.01.T01:five_prime_UTR 30.0%
AATGCAAAAAACAGAGTTTG+GGG + Chr3:101272765-101272784 None:intergenic 30.0%
AGAGAAAAATCGAGATCAAA+AGG - Chr3:101272811-101272830 MsG0380017841.01.T01:intron 30.0%
AGTAAGTAGATGTAACATCT+AGG + Chr3:101274716-101274735 None:intergenic 30.0%
AGTTAGCAATGTGTTTGTTT+GGG - Chr3:101272689-101272708 MsG0380017841.01.T01:intron 30.0%
ATTAAATAAGCTCCTTGATC+TGG + Chr3:101275526-101275545 None:intergenic 30.0%
ATTTCTTGCATTTCACAATG+TGG - Chr3:101273062-101273081 MsG0380017841.01.T01:intron 30.0%
CAAATGCAAAAAACAGAGTT+TGG + Chr3:101272767-101272786 None:intergenic 30.0%
GCAGATTTAGATCTAACAAA+AGG - Chr3:101273438-101273457 MsG0380017841.01.T01:intron 30.0%
GTCTATTCTATGTAATGTGT+AGG + Chr3:101274355-101274374 None:intergenic 30.0%
TAACAAAACCTGCATTAAGA+AGG + Chr3:101274760-101274779 None:intergenic 30.0%
TAGGATAAGATAATGCCATA+AGG + Chr3:101274387-101274406 None:intergenic 30.0%
TGCTTTCATGTATATACTAG+GGG - Chr3:101274676-101274695 MsG0380017841.01.T01:CDS 30.0%
TGTATAAATAAAGGGGAAAG+TGG - Chr3:101274489-101274508 MsG0380017841.01.T01:CDS 30.0%
TTATAACTCAACTGGATATG+GGG - Chr3:101274046-101274065 MsG0380017841.01.T01:intron 30.0%
TTATAATATGTCGCAACTTC+AGG + Chr3:101274032-101274051 None:intergenic 30.0%
TTTACCAAAATCACAGATCA+AGG - Chr3:101275477-101275496 MsG0380017841.01.T01:intron 30.0%
! AACAACAAAATAAGTTGGAG+AGG - Chr3:101273387-101273406 MsG0380017841.01.T01:intron 30.0%
! ACAACAAAATAAGTTGGAGA+GGG - Chr3:101273388-101273407 MsG0380017841.01.T01:intron 30.0%
! CGGATTTTCTATAATTTTGG+AGG + Chr3:101274836-101274855 None:intergenic 30.0%
! CTGACTTGATATTAACCAAT+GGG - Chr3:101274942-101274961 MsG0380017841.01.T01:CDS 30.0%
! TCTAGAATATGGAGATCAAA+TGG - Chr3:101273536-101273555 MsG0380017841.01.T01:intron 30.0%
! TCTGACTTGATATTAACCAA+TGG - Chr3:101274941-101274960 MsG0380017841.01.T01:CDS 30.0%
! TTCTGTATATTCAGGTTAGT+TGG - Chr3:101273643-101273662 MsG0380017841.01.T01:CDS 30.0%
! TTGAAATGGCTCAGTTATTT+TGG - Chr3:101274592-101274611 MsG0380017841.01.T01:CDS 30.0%
! TTTTTGTAGAATACTCTCTC+TGG - Chr3:101275436-101275455 MsG0380017841.01.T01:intron 30.0%
!! AATACTTTGGTGGGTTATTT+AGG + Chr3:101273243-101273262 None:intergenic 30.0%
!! ATGAGACTTACATTGATTCT+AGG - Chr3:101276014-101276033 MsG0380017841.01.T01:five_prime_UTR 30.0%
!! CAATGTGGTTGGTTTATTAT+AGG - Chr3:101273077-101273096 MsG0380017841.01.T01:intron 30.0%
!! TATTTTTGATCAATAGCACC+AGG + Chr3:101272961-101272980 None:intergenic 30.0%
!! TGAAATGGCTCAGTTATTTT+GGG - Chr3:101274593-101274612 MsG0380017841.01.T01:CDS 30.0%
!!! AATTTTCATAAAAAGTGCCC+CGG + Chr3:101274986-101275005 None:intergenic 30.0%
!!! AGTTTTATTAGATAGTCTGG+AGG - Chr3:101275142-101275161 MsG0380017841.01.T01:CDS 30.0%
AAATTATAGAAAATCCGCCG+AGG - Chr3:101274839-101274858 MsG0380017841.01.T01:intron 35.0%
AACCGAACTGGATATTGAAT+CGG - Chr3:101273160-101273179 MsG0380017841.01.T01:CDS 35.0%
AAGTTTAGTCACCACATCTT+CGG - Chr3:101276099-101276118 MsG0380017841.01.T01:five_prime_UTR 35.0%
ACAAAAGGAATGTATGATGC+CGG - Chr3:101273453-101273472 MsG0380017841.01.T01:intron 35.0%
AGAAAATGGGTCAGATATTC+CGG - Chr3:101274628-101274647 MsG0380017841.01.T01:CDS 35.0%
AGAGTAAACTACCTAGTTGT+TGG - Chr3:101272504-101272523 MsG0380017841.01.T01:CDS 35.0%
AGGATATGTTCACTTGTAAG+AGG + Chr3:101273848-101273867 None:intergenic 35.0%
ATAGACTCAATCAAGCCTTA+TGG - Chr3:101274369-101274388 MsG0380017841.01.T01:CDS 35.0%
ATATACAGAACATTCTCCGA+AGG + Chr3:101273633-101273652 None:intergenic 35.0%
ATCAAGTCAGATAGCATTCA+AGG + Chr3:101274932-101274951 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG + Chr3:101274460-101274479 None:intergenic 35.0%
ATGCTACGGTTCAAATACTT+TGG + Chr3:101273256-101273275 None:intergenic 35.0%
ATTCCTGCTAATGCAAAAAC+TGG - Chr3:101275905-101275924 MsG0380017841.01.T01:five_prime_UTR 35.0%
CAGAACCATATGAACTTGAA+AGG + Chr3:101274812-101274831 None:intergenic 35.0%
CCAAATCAAATCACATGCTA+CGG + Chr3:101273270-101273289 None:intergenic 35.0%
GAAAAATCGAGATCAAAAGG+AGG - Chr3:101272814-101272833 MsG0380017841.01.T01:intron 35.0%
GAGTTAGCAATGTGTTTGTT+TGG - Chr3:101272688-101272707 MsG0380017841.01.T01:intron 35.0%
GATATGTTCACTTGTAAGAG+GGG + Chr3:101273846-101273865 None:intergenic 35.0%
GCGACATATTATAACTCAAC+TGG - Chr3:101274038-101274057 MsG0380017841.01.T01:intron 35.0%
GGAGAATGTTCTGTATATTC+AGG - Chr3:101273635-101273654 MsG0380017841.01.T01:CDS 35.0%
GGATATGTTCACTTGTAAGA+GGG + Chr3:101273847-101273866 None:intergenic 35.0%
GGTAACCGAGAATGAAAAAA+AGG + Chr3:101273039-101273058 None:intergenic 35.0%
GTTAGCAATGTGTTTGTTTG+GGG - Chr3:101272690-101272709 MsG0380017841.01.T01:intron 35.0%
GTTTATTGCGTTTGTGATTC+TGG - Chr3:101272849-101272868 MsG0380017841.01.T01:intron 35.0%
TAAACTACCTAGTTGTTGGT+TGG - Chr3:101272508-101272527 MsG0380017841.01.T01:CDS 35.0%
TAATGCAAAAACTGGTTGCA+AGG - Chr3:101275913-101275932 MsG0380017841.01.T01:five_prime_UTR 35.0%
TACGGTTCAAATACTTTGGT+GGG + Chr3:101273252-101273271 None:intergenic 35.0%
TAGACCTGAGTTAATTACTG+AGG - Chr3:101273815-101273834 MsG0380017841.01.T01:intron 35.0%
TATAACAGTGCTGTCATAGT+TGG - Chr3:101276067-101276086 MsG0380017841.01.T01:five_prime_UTR 35.0%
TCTAGGAACAATTCTATGCA+AGG - Chr3:101276031-101276050 MsG0380017841.01.T01:five_prime_UTR 35.0%
TTTATCAAAATCGATGTGGC+AGG - Chr3:101273758-101273777 MsG0380017841.01.T01:intron 35.0%
! AACTCCTTGATCTGTGATTT+TGG + Chr3:101275484-101275503 None:intergenic 35.0%
! ATAACTGTTTTGCATGCTTG+AGG + Chr3:101273965-101273984 None:intergenic 35.0%
! ATCTAGAGTAAGCTTCTTCA+AGG - Chr3:101274779-101274798 MsG0380017841.01.T01:intron 35.0%
! CAACAAAATAAGTTGGAGAG+GGG - Chr3:101273389-101273408 MsG0380017841.01.T01:intron 35.0%
!! AAAAACAGAGTTTGGGGTTT+TGG + Chr3:101272759-101272778 None:intergenic 35.0%
!! CGGCGGATTTTCTATAATTT+TGG + Chr3:101274839-101274858 None:intergenic 35.0%
!! CTTTCAAGTTCATATGGTTC+TGG - Chr3:101274810-101274829 MsG0380017841.01.T01:intron 35.0%
!!! ACTATCAGTTCTGCTTTTTG+TGG + Chr3:101274901-101274920 None:intergenic 35.0%
!!! CATGAAGTTTGGTTTTCCTA+TGG - Chr3:101273482-101273501 MsG0380017841.01.T01:intron 35.0%
!!! TTTTTTTTGGGTCCAGATCA+AGG - Chr3:101275511-101275530 MsG0380017841.01.T01:intron 35.0%
AAAAGGAATGTATGATGCCG+GGG - Chr3:101273455-101273474 MsG0380017841.01.T01:intron 40.0%
AAAGGGACCAGAGATAGTAT+CGG - Chr3:101275740-101275759 MsG0380017841.01.T01:five_prime_UTR 40.0%
ACAGCACTGTTATATGTGCT+TGG + Chr3:101276061-101276080 None:intergenic 40.0%
ACCAGAAAACTCATATGCTG+AGG + Chr3:101275837-101275856 None:intergenic 40.0%
AGATCAAAAGGAGGATGTTG+TGG - Chr3:101272823-101272842 MsG0380017841.01.T01:intron 40.0%
AGTAAGCTTCTTCAAGGCAA+AGG - Chr3:101274785-101274804 MsG0380017841.01.T01:intron 40.0%
AGTTTACTCTGTCGTTGTGT+TGG + Chr3:101272494-101272513 None:intergenic 40.0%
ATGAATGCATACCTGAGATC+TGG + Chr3:101275411-101275430 None:intergenic 40.0%
CAAAAACTGGTTGCAAGGAT+GGG - Chr3:101275918-101275937 MsG0380017841.01.T01:five_prime_UTR 40.0%
CAAAAGGAATGTATGATGCC+GGG - Chr3:101273454-101273473 MsG0380017841.01.T01:intron 40.0%
CAATTCAGATAAACCCGAAC+CGG - Chr3:101272924-101272943 MsG0380017841.01.T01:intron 40.0%
CACTCATTAGCATTTCCCAT+TGG + Chr3:101274960-101274979 None:intergenic 40.0%
CCGTAGCATGTGATTTGATT+TGG - Chr3:101273267-101273286 MsG0380017841.01.T01:CDS 40.0%
CGTTCCTCAGTAATTAACTC+AGG + Chr3:101273822-101273841 None:intergenic 40.0%
CTACGGTTCAAATACTTTGG+TGG + Chr3:101273253-101273272 None:intergenic 40.0%
CTTGCATTTCACAATGTGGT+TGG - Chr3:101273066-101273085 MsG0380017841.01.T01:intron 40.0%
GAAAATGGGTCAGATATTCC+GGG - Chr3:101274629-101274648 MsG0380017841.01.T01:CDS 40.0%
GACCGTTAACCAACTAGAAT+GGG + Chr3:101273329-101273348 None:intergenic 40.0%
GGAGAAGACTATGCTCAATT+TGG - Chr3:101274149-101274168 MsG0380017841.01.T01:intron 40.0%
GTAAGCTTCTTCAAGGCAAA+GGG - Chr3:101274786-101274805 MsG0380017841.01.T01:intron 40.0%
TACTCTCGTGACACTCTTTA+AGG + Chr3:101275076-101275095 None:intergenic 40.0%
TATTGAATCGGCAAGATCTC+TGG - Chr3:101273172-101273191 MsG0380017841.01.T01:CDS 40.0%
TCAATGCAGTTTCAGATCGA+TGG + Chr3:101272570-101272589 None:intergenic 40.0%
TCGAAGATCTGATGGTTTGA+AGG + Chr3:101275381-101275400 None:intergenic 40.0%
TGACCGTTAACCAACTAGAA+TGG + Chr3:101273330-101273349 None:intergenic 40.0%
TGTTATTCATGTGATGCAGC+TGG - Chr3:101273354-101273373 MsG0380017841.01.T01:intron 40.0%
TTTCAAGCCGATACTATCTC+TGG + Chr3:101275750-101275769 None:intergenic 40.0%
! AATAAGTTGGAGAGGGGATT+CGG - Chr3:101273395-101273414 MsG0380017841.01.T01:intron 40.0%
! AATGGTAACGATCGATATCG+CGG + Chr3:101272405-101272424 None:intergenic 40.0%
! ATATGGGGATGAGCTTTTGT+GGG - Chr3:101274061-101274080 MsG0380017841.01.T01:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG + Chr3:101274445-101274464 None:intergenic 40.0%
! CAACCAGTTTTTGCATTAGC+AGG + Chr3:101275911-101275930 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG + Chr3:101274446-101274465 None:intergenic 40.0%
! GAGCATAGTCTTCTCCATTT+TGG + Chr3:101274145-101274164 None:intergenic 40.0%
! TCAGCATATGAGTTTTCTGG+TGG - Chr3:101275836-101275855 MsG0380017841.01.T01:five_prime_UTR 40.0%
! TCCTCAGCATATGAGTTTTC+TGG - Chr3:101275833-101275852 MsG0380017841.01.T01:five_prime_UTR 40.0%
! TGCCCATTCTAGTTGGTTAA+CGG - Chr3:101273324-101273343 MsG0380017841.01.T01:intron 40.0%
! TTTTGATCAATAGCACCAGG+AGG + Chr3:101272958-101272977 None:intergenic 40.0%
!! AAGGGCCTTTCAAGTTCATA+TGG - Chr3:101274804-101274823 MsG0380017841.01.T01:intron 40.0%
!! AATCTTGTGCTGGTTCCAAT+TGG + Chr3:101273572-101273591 None:intergenic 40.0%
!! ACTTTGGTGGGTTATTTAGG+CGG + Chr3:101273240-101273259 None:intergenic 40.0%
!! ATGAGTTTTCTGGTGGGATA+TGG - Chr3:101275843-101275862 MsG0380017841.01.T01:five_prime_UTR 40.0%
!! CAGCATATGAGTTTTCTGGT+GGG - Chr3:101275837-101275856 MsG0380017841.01.T01:five_prime_UTR 40.0%
!! GTGTTGGAGGATAATGGATA+CGG + Chr3:101272478-101272497 None:intergenic 40.0%
!! TCGTGGGCAATTCTAGAATA+TGG - Chr3:101273525-101273544 MsG0380017841.01.T01:intron 40.0%
!! TGCCGATTCAATATCCAGTT+CGG + Chr3:101273165-101273184 None:intergenic 40.0%
AAATGCTAATGAGTGCCTCC+GGG - Chr3:101274965-101274984 MsG0380017841.01.T01:CDS 45.0%
AACAGCACCAACCAACAACT+AGG + Chr3:101272518-101272537 None:intergenic 45.0%
AACCAGCACAAGATTCTCTC+AGG - Chr3:101273577-101273596 MsG0380017841.01.T01:intron 45.0%
AAGACCACACATTACAGCCT+CGG + Chr3:101274859-101274878 None:intergenic 45.0%
AAGTGCTCCAGTAGCTACAT+TGG + Chr3:101275975-101275994 None:intergenic 45.0%
AATGGATGCTGTTGGCCAAT+TGG - Chr3:101273554-101273573 MsG0380017841.01.T01:intron 45.0%
ACCAAACTTCATGTGATCCC+CGG + Chr3:101273475-101273494 None:intergenic 45.0%
AGCAATGGCATCAGCATCTT+TGG - Chr3:101273902-101273921 MsG0380017841.01.T01:intron 45.0%
AGCTACATTGGGATTCGGAT+CGG + Chr3:101275963-101275982 None:intergenic 45.0%
AGCTCTTCATACCTGAGTTC+CGG + Chr3:101274210-101274229 None:intergenic 45.0%
AGGAATCATCACCTGTAGCA+TGG + Chr3:101274103-101274122 None:intergenic 45.0%
AGTGCTCCAGTAGCTACATT+GGG + Chr3:101275974-101275993 None:intergenic 45.0%
ATCGTGGTTTCATCGCAGTT+TGG + Chr3:101273213-101273232 None:intergenic 45.0%
ATGTTGCTGCCCATTCTAGT+TGG - Chr3:101273317-101273336 MsG0380017841.01.T01:intron 45.0%
CAAAAGGAGGATGTTGTGGT+TGG - Chr3:101272827-101272846 MsG0380017841.01.T01:intron 45.0%
CAACACTTGTGATCTGCAAC+AGG + Chr3:101273792-101273811 None:intergenic 45.0%
CAAGTGAACATATCCTGTCC+CGG - Chr3:101273852-101273871 MsG0380017841.01.T01:intron 45.0%
CCAGTAGCTACATTGGGATT+CGG + Chr3:101275968-101275987 None:intergenic 45.0%
CCCACAATTTGTGCATCACA+GGG - Chr3:101275875-101275894 MsG0380017841.01.T01:five_prime_UTR 45.0%
CCCTGTGATGCACAAATTGT+GGG + Chr3:101275878-101275897 None:intergenic 45.0%
CTGTTGCAGATCACAAGTGT+TGG - Chr3:101273790-101273809 MsG0380017841.01.T01:intron 45.0%
GAAATGCTAATGAGTGCCTC+CGG - Chr3:101274964-101274983 MsG0380017841.01.T01:CDS 45.0%
GCAAAAACTGGTTGCAAGGA+TGG - Chr3:101275917-101275936 MsG0380017841.01.T01:five_prime_UTR 45.0%
GCAAAGTCTCGAAGATCTGA+TGG + Chr3:101275389-101275408 None:intergenic 45.0%
GCTAAGAATGCAGATGCAAC+AGG + Chr3:101275296-101275315 None:intergenic 45.0%
GGAGAGAATGGAGTGGAAAA+TGG + Chr3:101272423-101272442 None:intergenic 45.0%
GGAGATCAAATGGATGCTGT+TGG - Chr3:101273546-101273565 MsG0380017841.01.T01:intron 45.0%
GTCGTTGTGTTGGAGGATAA+TGG + Chr3:101272484-101272503 None:intergenic 45.0%
GTCTGATATGGGTGAGTGAA+TGG - Chr3:101275255-101275274 MsG0380017841.01.T01:intron 45.0%
GTCTGGAGGAACACAAACTA+TGG - Chr3:101275156-101275175 MsG0380017841.01.T01:intron 45.0%
TCAAAATCGATGTGGCAGGT+TGG - Chr3:101273762-101273781 MsG0380017841.01.T01:intron 45.0%
TCCCACAATTTGTGCATCAC+AGG - Chr3:101275874-101275893 MsG0380017841.01.T01:five_prime_UTR 45.0%
TCCCTGTGATGCACAAATTG+TGG + Chr3:101275879-101275898 None:intergenic 45.0%
TCCTACCTTCAGTATGTGAC+TGG - Chr3:101274119-101274138 MsG0380017841.01.T01:intron 45.0%
TCTCGTCAATGCTCATCCTT+CGG - Chr3:101273614-101273633 MsG0380017841.01.T01:intron 45.0%
TTACTCTGTCGTTGTGTTGG+AGG + Chr3:101272491-101272510 None:intergenic 45.0%
TTATTTAGGCGGCTCAATCG+TGG + Chr3:101273229-101273248 None:intergenic 45.0%
TTCAGCTGCAACATCTGATC+CGG + Chr3:101273874-101273893 None:intergenic 45.0%
TTCCAGGCTGATTACGTGTT+GGG - Chr3:101275804-101275823 MsG0380017841.01.T01:five_prime_UTR 45.0%
TTTGGCCAGTCACATACTGA+AGG + Chr3:101274127-101274146 None:intergenic 45.0%
! ACTTTTGCGGACAAGCATAG+AGG - Chr3:101273987-101274006 MsG0380017841.01.T01:intron 45.0%
! ATGGTAACGATCGATATCGC+GGG + Chr3:101272404-101272423 None:intergenic 45.0%
! CAGTATGTGACTGGCCAAAA+TGG - Chr3:101274128-101274147 MsG0380017841.01.T01:intron 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG - Chr3:101274443-101274462 MsG0380017841.01.T01:CDS 45.0%
! CGGTTCGGGTTTATCTGAAT+TGG + Chr3:101272926-101272945 None:intergenic 45.0%
! GATATGGGGATGAGCTTTTG+TGG - Chr3:101274060-101274079 MsG0380017841.01.T01:intron 45.0%
! TCCTATGGCTTTTACTGCCT+CGG - Chr3:101273497-101273516 MsG0380017841.01.T01:intron 45.0%
!! GTTTGTGATTCTGGCTCTTG+TGG - Chr3:101272858-101272877 MsG0380017841.01.T01:intron 45.0%
!! TTTCATAAAAAGTGCCCCGG+AGG + Chr3:101274983-101275002 None:intergenic 45.0%
!!! GTTCTGCTTTTTGTGGCTGT+TGG + Chr3:101274894-101274913 None:intergenic 45.0%
AAACTGGTTGCAAGGATGGG+TGG - Chr3:101275921-101275940 MsG0380017841.01.T01:five_prime_UTR 50.0%
AAGCCCAACCTGGTTCAGTT+GGG - Chr3:101274172-101274191 MsG0380017841.01.T01:intron 50.0%
AATGCTAATGAGTGCCTCCG+GGG - Chr3:101274966-101274985 MsG0380017841.01.T01:CDS 50.0%
ACCGAGGCAGTAAAAGCCAT+AGG + Chr3:101273501-101273520 None:intergenic 50.0%
AGCTGAAACTGCAGCAGCAA+TGG - Chr3:101273887-101273906 MsG0380017841.01.T01:intron 50.0%
AGTTGGGACAACAAGCTTGC+CGG - Chr3:101274188-101274207 MsG0380017841.01.T01:intron 50.0%
ATCAATAGCACCAGGAGGAC+CGG + Chr3:101272953-101272972 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG - Chr3:101274633-101274652 MsG0380017841.01.T01:CDS 50.0%
CACCTGAGAGAATCTTGTGC+TGG + Chr3:101273582-101273601 None:intergenic 50.0%
CAGCACAAGATTCTCTCAGG+TGG - Chr3:101273580-101273599 MsG0380017841.01.T01:intron 50.0%
CCGAATCCCAATGTAGCTAC+TGG - Chr3:101275965-101275984 MsG0380017841.01.T01:five_prime_UTR 50.0%
CTCAATTTGGAAGCCCAACC+TGG - Chr3:101274162-101274181 MsG0380017841.01.T01:intron 50.0%
CTCAGATAAAACGGGACGGA+GGG + Chr3:101274437-101274456 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG + Chr3:101274441-101274460 None:intergenic 50.0%
CTTCCAGGCTGATTACGTGT+TGG - Chr3:101275803-101275822 MsG0380017841.01.T01:five_prime_UTR 50.0%
GAAATGGGGAGAGAATGGAG+TGG + Chr3:101272430-101272449 None:intergenic 50.0%
GATACGGATCTAATCCGACC+CGG + Chr3:101272462-101272481 None:intergenic 50.0%
GCCAGTCACATACTGAAGGT+AGG + Chr3:101274123-101274142 None:intergenic 50.0%
TCAGCTGCAACATCTGATCC+GGG + Chr3:101273873-101273892 None:intergenic 50.0%
TCGAGACTTTGCCAGATCTC+AGG - Chr3:101275397-101275416 MsG0380017841.01.T01:intron 50.0%
TCGGCAAGATCTCTGGATCA+TGG - Chr3:101273179-101273198 MsG0380017841.01.T01:CDS 50.0%
TGTCCCAACTGAACCAGGTT+GGG + Chr3:101274178-101274197 None:intergenic 50.0%
TTGTCCCAACTGAACCAGGT+TGG + Chr3:101274179-101274198 None:intergenic 50.0%
TTTGTGGCTGTTGGAGAGTC+TGG + Chr3:101274885-101274904 None:intergenic 50.0%
! CTTGTTGTCCCAACTGAACC+AGG + Chr3:101274183-101274202 None:intergenic 50.0%
! GTAGCTACTGGAGCACTTGT+TGG - Chr3:101275977-101275996 MsG0380017841.01.T01:five_prime_UTR 50.0%
!! GTGATTCTGGCTCTTGTGGT+CGG - Chr3:101272862-101272881 MsG0380017841.01.T01:intron 50.0%
AATTGCCCACGATAGCACCG+AGG + Chr3:101273517-101273536 None:intergenic 55.0%
ACCACACATTACAGCCTCGG+CGG + Chr3:101274856-101274875 None:intergenic 55.0%
ACCTGTAGCATGGTAGAGCC+AGG + Chr3:101274093-101274112 None:intergenic 55.0%
AGTTTGTACTCCCTCCGTCC+CGG + Chr3:101274650-101274669 None:intergenic 55.0%
CAACAAGCTTGCCGGAACTC+AGG - Chr3:101274196-101274215 MsG0380017841.01.T01:intron 55.0%
GAAGCCCAACCTGGTTCAGT+TGG - Chr3:101274171-101274190 MsG0380017841.01.T01:intron 55.0%
GAGAGGGGATTCGGCTCTTA+AGG - Chr3:101273404-101273423 MsG0380017841.01.T01:intron 55.0%
GATCTAATCCGACCCGGTTG+CGG + Chr3:101272456-101272475 None:intergenic 55.0%
GCCGGGGATCACATGAAGTT+TGG - Chr3:101273471-101273490 MsG0380017841.01.T01:intron 55.0%
GCTCAGATAAAACGGGACGG+AGG + Chr3:101274438-101274457 None:intergenic 55.0%
GGATTGAAGGGCCGAAGATG+TGG + Chr3:101276113-101276132 None:intergenic 55.0%
GGCGAGAAATGGGGAGAGAA+TGG + Chr3:101272435-101272454 None:intergenic 55.0%
GGGGATTCGGCTCTTAAGGA+TGG - Chr3:101273408-101273427 MsG0380017841.01.T01:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG - Chr3:101274637-101274656 MsG0380017841.01.T01:CDS 55.0%
TCAATAGCACCAGGAGGACC+GGG + Chr3:101272952-101272971 None:intergenic 55.0%
TGCAACATCTGATCCGGGAC+AGG + Chr3:101273868-101273887 None:intergenic 55.0%
TGCCCAACACGTAATCAGCC+TGG + Chr3:101275809-101275828 None:intergenic 55.0%
! AGCTTTTGTGGGCAGCTACC+TGG - Chr3:101274072-101274091 MsG0380017841.01.T01:intron 55.0%
! GATAAACCCGAACCGGTTCC+CGG - Chr3:101272931-101272950 MsG0380017841.01.T01:intron 55.0%
! GCTACTGGAGCACTTGTTGG+TGG - Chr3:101275980-101275999 MsG0380017841.01.T01:five_prime_UTR 55.0%
!! ACCTGGCTCTACCATGCTAC+AGG - Chr3:101274089-101274108 MsG0380017841.01.T01:intron 55.0%
!! TACTGCCTCGGTGCTATCGT+GGG - Chr3:101273509-101273528 MsG0380017841.01.T01:intron 55.0%
!! TTACTGCCTCGGTGCTATCG+TGG - Chr3:101273508-101273527 MsG0380017841.01.T01:intron 55.0%
ACCCGGTTGCGGCGAGAAAT+GGG + Chr3:101272445-101272464 None:intergenic 60.0%
ATTTCTCGCCGCAACCGGGT+CGG - Chr3:101272445-101272464 MsG0380017841.01.T01:CDS 60.0%
GGTCAGATATTCCGGGACGG+AGG - Chr3:101274636-101274655 MsG0380017841.01.T01:CDS 60.0%
GTTGCAAGGATGGGTGGCAG+TGG - Chr3:101275927-101275946 MsG0380017841.01.T01:five_prime_UTR 60.0%
TCCCCATTTCTCGCCGCAAC+CGG - Chr3:101272440-101272459 MsG0380017841.01.T01:CDS 60.0%
TCCGCCGAGGCTGTAATGTG+TGG - Chr3:101274852-101274871 MsG0380017841.01.T01:intron 60.0%
AGGAGGACCGGGAACCGGTT+CGG + Chr3:101272941-101272960 None:intergenic 65.0%
CCCCATTTCTCGCCGCAACC+GGG - Chr3:101272441-101272460 MsG0380017841.01.T01:CDS 65.0%
CCCGGTTGCGGCGAGAAATG+GGG + Chr3:101272444-101272463 None:intergenic 65.0%
GACCCGGTTGCGGCGAGAAA+TGG + Chr3:101272446-101272465 None:intergenic 65.0%
GCACCAGGAGGACCGGGAAC+CGG + Chr3:101272946-101272965 None:intergenic 70.0%
! GAACCGGTTCCCGGTCCTCC+TGG - Chr3:101272940-101272959 MsG0380017841.01.T01:intron 70.0%
! GGAGGACCGGGAACCGGTTC+GGG + Chr3:101272940-101272959 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 101272401 101276141 101272401 ID=MsG0380017841.01;Name=MsG0380017841.01
Chr3 mRNA 101272401 101276141 101272401 ID=MsG0380017841.01.T01;Parent=MsG0380017841.01;Name=MsG0380017841.01.T01;_AED=0.27;_eAED=0.27;_QI=407|0.8|0.66|1|0.8|0.66|6|0|523
Chr3 exon 101272401 101272702 101272401 ID=MsG0380017841.01.T01:exon:2905;Parent=MsG0380017841.01.T01
Chr3 exon 101273111 101273290 101273111 ID=MsG0380017841.01.T01:exon:2904;Parent=MsG0380017841.01.T01
Chr3 exon 101273624 101273771 101273624 ID=MsG0380017841.01.T01:exon:2903;Parent=MsG0380017841.01.T01
Chr3 exon 101274325 101274762 101274325 ID=MsG0380017841.01.T01:exon:2902;Parent=MsG0380017841.01.T01
Chr3 exon 101274886 101275169 101274886 ID=MsG0380017841.01.T01:exon:2901;Parent=MsG0380017841.01.T01
Chr3 exon 101275515 101276141 101275515 ID=MsG0380017841.01.T01:exon:2900;Parent=MsG0380017841.01.T01
Chr3 five_prime_UTR 101275735 101276141 101275735 ID=MsG0380017841.01.T01:five_prime_utr;Parent=MsG0380017841.01.T01
Chr3 CDS 101275515 101275734 101275515 ID=MsG0380017841.01.T01:cds;Parent=MsG0380017841.01.T01
Chr3 CDS 101274886 101275169 101274886 ID=MsG0380017841.01.T01:cds;Parent=MsG0380017841.01.T01
Chr3 CDS 101274325 101274762 101274325 ID=MsG0380017841.01.T01:cds;Parent=MsG0380017841.01.T01
Chr3 CDS 101273624 101273771 101273624 ID=MsG0380017841.01.T01:cds;Parent=MsG0380017841.01.T01
Chr3 CDS 101273111 101273290 101273111 ID=MsG0380017841.01.T01:cds;Parent=MsG0380017841.01.T01
Chr3 CDS 101272401 101272702 101272401 ID=MsG0380017841.01.T01:cds;Parent=MsG0380017841.01.T01
Gene Sequence

>MsG0380017841.01.T01

ATGAGAGAAAAATCGAGATCAAAAGGAGGATGTTGTGGTTGGTTTATTGCGTTTGTGATTCTGGCTCTTGTGGTCGGTGCTATTGTTTATGCTGTTAAGAAGAAAATCGATAACTCCAATTCAGATAAACCCGAACCGGTTCCCGGTCCTCCTGGTGCTATTGATCAAAAATATGCTTCTGCTCTCAAAACTGCAATGCAATTCTTCGACGTGCAAAAATCTGGCAAGTTAGAGAACAACAAAATAAGTTGGAGAGGGGATTCGGCTCTTAAGGATGGAAAGCAAGCAGATTTAGATCTAACAAAAGGAATGTATGATGCCGGGGATCACATGAAGTTTGGTTTTCCTATGGCTTTTACTGCCTCGGTGCTATCGTGGGCAATTCTAGAATATGGAGATCAAATGGATGCTGTTGGCCAATTGGAACCAGCACAAGATTCTCTCAGGTGGATCACTGATTTTCTCGTCAATGCTCATCCTTCGGAGAATGTTCTGTATATTCAGGTTGGTGATCCTGTTGCAGATCACAAGTGTTGGAATAGACCTGAGTTAATTACTGAGGAACGACCCCTCTTACAAGTGAACATATCCTGTCCCGGATCAGATGTTGCAGCTGAAACTGCAGCAGCAATGGCATCAGCATCTTTGGTCTTCAAAAAGTCAGATGCTACATATTCAAGCACTCTCCTCAAGCATGCAAAACAGTTATTTACTTTTGCGGACAAGCATAGAGGAATTTACAGTGAGAATATACCTGAAGTTGCGACATATTATAACTCAACTGGATATGGGGATGAGCTTTTGTGGGCAGCTACCTGGCTCTACCATGCTACAGGTGATGATTCCTACCTTCAGTATGTGACTGGCCAAAATGGAGAAGACTATGCTCAATTTGGAAGCCCAACCTGGTTCAGTTGGGACAACAAGCTTGCCGGAACTCAGGTTTTGTTATCTAGAGTAAGCTTCTTCAAGGCAAAGGGCCTTTCAAGTTCATATGGTTCTGGCCTCCAAAATTATAGAAAATCCGCCGAGGCTGTAATGTGTGGTCTTCTTCCAGACTCTCCAACAGCCACAAAAAGCAGAACTGATAATGGTCTGATATGGGTGAGTGAATGGAATGCTTTGCAGCATCCTGTTGCATCTGCATTCTTAGCTTCTGTTTACAGTGACTATATGCTTACAACGCAGACTCCCAATATAAAATGTGATTCAGATTCCTTCAAACCATCAGATCTTCGAGACTTTGCCAGATCTCAGGTATGCATTCATTCATATGAGTTTTCTGGTGGGATATGGAAAGAATTTCCCACAATTTGTGCATCACAGGGAGCTTCAATTCCTGCTAATGCAAAAACTGGTTGCAAGGATGGGTGGCAGTGGCTTGACTCATCCGATCCGAATCCCAATGTAGCTACTGGAGCACTTGTTGGTGGACCTTTCTTAAATGAGACTTACATTGATTCTAGGAACAATTCTATGCAAGGAGAACCAAGCACATATAACAGTGCTGTCATAGTTGGTCTCTTATCAAGTTTAGTCACCACATCTTCGGCCCTTCAATCCTTCTCCTAA
Protein sequence

>MsG0380017841.01.T01

MREKSRSKGGCCGWFIAFVILALVVGAIVYAVKKKIDNSNSDKPEPVPGPPGAIDQKYASALKTAMQFFDVQKSGKLENNKISWRGDSALKDGKQADLDLTKGMYDAGDHMKFGFPMAFTASVLSWAILEYGDQMDAVGQLEPAQDSLRWITDFLVNAHPSENVLYIQVGDPVADHKCWNRPELITEERPLLQVNISCPGSDVAAETAAAMASASLVFKKSDATYSSTLLKHAKQLFTFADKHRGIYSENIPEVATYYNSTGYGDELLWAATWLYHATGDDSYLQYVTGQNGEDYAQFGSPTWFSWDNKLAGTQVLLSRVSFFKAKGLSSSYGSGLQNYRKSAEAVMCGLLPDSPTATKSRTDNGLIWVSEWNALQHPVASAFLASVYSDYMLTTQTPNIKCDSDSFKPSDLRDFARSQVCIHSYEFSGGIWKEFPTICASQGASIPANAKTGCKDGWQWLDSSDPNPNVATGALVGGPFLNETYIDSRNNSMQGEPSTYNSAVIVGLLSSLVTTSSALQSFS*