AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017761.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017761.01.T01 MTR_3g111670 98.726 157 2 0 3 159 75 231 2.19e-115 326
MsG0380017761.01.T01 MTR_1g021970 82.278 158 26 2 3 159 70 226 2.03e-91 265
MsG0380017761.01.T01 MTR_1g021970 81.646 158 26 3 3 159 70 225 3.68e-89 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017761.01.T01 AT1G19330 75.159 157 38 1 3 159 72 227 1.26e-70 213
MsG0380017761.01.T01 AT1G19330 73.457 162 37 2 3 159 72 232 6.93e-69 209
MsG0380017761.01.T01 AT1G19330 72.393 163 38 3 3 159 72 233 1.89e-67 205
MsG0380017761.01.T01 AT1G75060 66.038 159 51 3 3 159 76 233 2.42e-66 202
MsG0380017761.01.T01 AT1G75060 65.409 159 51 4 3 159 76 232 6.60e-64 196
MsG0380017761.01.T01 AT1G75060 65.487 113 37 2 3 113 76 188 6.39e-41 136

Find 74 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAGTAGGTTAATAGTTTA+AGG 0.109374 3:-100379042 MsG0380017761.01.T01:three_prime_UTR
AGCTGCTCCTTTGATGGGTT+TGG 0.231841 3:+100379599 None:intergenic
CTCTGGTGATTCACAGTCTA+AGG 0.252293 3:-100379952 MsG0380017761.01.T01:CDS
GGACGAGTTGCAGGTCATTA+AGG 0.256826 3:-100379245 MsG0380017761.01.T01:CDS
ACATATATCTACATAATAAC+TGG 0.282748 3:+100378986 None:intergenic
CTTACTATGTACATATTAAT+CGG 0.294276 3:-100379086 MsG0380017761.01.T01:three_prime_UTR
GCAATGGAATGGATCAGATA+TGG 0.328027 3:-100380555 MsG0380017761.01.T01:CDS
ATAATGCAGGTTCTTACTAA+TGG 0.333844 3:-100380668 MsG0380017761.01.T01:CDS
GCTGCTCCTTTGATGGGTTT+GGG 0.336272 3:+100379600 None:intergenic
CATATTTCTGATATAGTAGT+AGG 0.336697 3:-100379056 MsG0380017761.01.T01:three_prime_UTR
TCTACTAGCTGCTCCTTTGA+TGG 0.354669 3:+100379593 None:intergenic
TGGCTGCATTGTGGAGATAT+TGG 0.369691 3:-100379760 MsG0380017761.01.T01:CDS
GAAGCAAATGGACGAGTTGC+AGG 0.380501 3:-100379254 MsG0380017761.01.T01:intron
GACGAGTTGCAGGTCATTAA+GGG 0.386548 3:-100379244 MsG0380017761.01.T01:CDS
TTAATAGTTTAAGGTTATAG+AGG 0.402780 3:-100379033 MsG0380017761.01.T01:three_prime_UTR
ATTGCACGTTATCAAATTCA+AGG 0.405029 3:+100380573 None:intergenic
TCGATGTATTGCTGACCTGC+TGG 0.417680 3:-100378908 MsG0380017761.01.T01:three_prime_UTR
TTCCCTTACGACCAGTTTCA+AGG 0.436157 3:+100378961 None:intergenic
CACAGAATGCATAGATCATT+GGG 0.437599 3:-100380005 MsG0380017761.01.T01:CDS
GCACAGAATGCATAGATCAT+TGG 0.439918 3:-100380006 MsG0380017761.01.T01:CDS
AATTACTAATATATACAATA+AGG 0.444214 3:+100378867 None:intergenic
CTACTAGCTGCTCCTTTGAT+GGG 0.444486 3:+100379594 None:intergenic
TGACTTGAGCAAGCTTGAAA+TGG 0.450063 3:-100379780 MsG0380017761.01.T01:CDS
GATATATGTGACCTTGAAAC+TGG 0.460934 3:-100378972 MsG0380017761.01.T01:three_prime_UTR
GCCAATCCGCCACCACCCTA+TGG 0.479576 3:-100378786 MsG0380017761.01.T01:three_prime_UTR
AGACTGTGTGCAAATGAGAT+TGG 0.492330 3:-100379195 MsG0380017761.01.T01:exon
TCTGGTGATTCACAGTCTAA+GGG 0.496708 3:-100379951 MsG0380017761.01.T01:CDS
TTACTATGTACATATTAATC+GGG 0.498465 3:-100379085 MsG0380017761.01.T01:three_prime_UTR
ATCATCTTCTTCATTGCCAG+TGG 0.499955 3:+100380598 None:intergenic
GGGTCCGTTACTATGCCTCA+TGG 0.500458 3:-100379930 MsG0380017761.01.T01:CDS
GCCATAGGGTGGTGGCGGAT+TGG 0.502890 3:+100378785 None:intergenic
ACCATGAGTAGGTCCTTCTC+TGG 0.512079 3:-100379969 MsG0380017761.01.T01:CDS
TACTATGCCTCATGGGTCCA+TGG 0.522112 3:-100379922 MsG0380017761.01.T01:intron
TTGAATTTGATAACGTGCAA+TGG 0.522138 3:-100380571 MsG0380017761.01.T01:CDS
ATAACCACTTCATTAGCCAT+AGG 0.525655 3:+100378770 None:intergenic
TGACCTTGAAACTGGTCGTA+AGG 0.527053 3:-100378964 MsG0380017761.01.T01:three_prime_UTR
GAGGCATTTCATGTCCCAGC+TGG 0.539302 3:-100379561 MsG0380017761.01.T01:intron
CAATGGAATGGATCAGATAT+GGG 0.541429 3:-100380554 MsG0380017761.01.T01:intron
CATTAGCCATAGGGTGGTGG+CGG 0.545825 3:+100378780 None:intergenic
CTAAAAGCTCACTTCCCAGC+AGG 0.547536 3:+100378893 None:intergenic
GAACATCGAAAAGAAAGCCT+TGG 0.547931 3:+100378934 None:intergenic
TAACCACTTCATTAGCCATA+GGG 0.553236 3:+100378771 None:intergenic
ATTTGTCAATGCTGCAAAGA+GGG 0.558483 3:-100379221 MsG0380017761.01.T01:CDS
TTTGATAACGTGCAATGGAA+TGG 0.564949 3:-100380566 MsG0380017761.01.T01:CDS
CTTCATTAGCCATAGGGTGG+TGG 0.564958 3:+100378777 None:intergenic
TCATCTTCTTCATTGCCAGT+GGG 0.573087 3:+100380599 None:intergenic
AGCGTGATTGAAGCACCCAC+TGG 0.574928 3:-100380614 MsG0380017761.01.T01:CDS
GACCTTGAAACTGGTCGTAA+GGG 0.580014 3:-100378963 MsG0380017761.01.T01:three_prime_UTR
GGTCGTAAGGGAAGTCTCCA+AGG 0.583097 3:-100378951 MsG0380017761.01.T01:three_prime_UTR
CCACCCTATGGCTAATGAAG+TGG 0.584364 3:-100378774 MsG0380017761.01.T01:three_prime_UTR
CGATGTATTGCTGACCTGCT+GGG 0.594454 3:-100378907 MsG0380017761.01.T01:three_prime_UTR
TGTCGTCCCAAACCCATCAA+AGG 0.596940 3:-100379606 MsG0380017761.01.T01:CDS
CATAGTAAGTACGAAGGGAG+GGG 0.597403 3:+100379100 None:intergenic
GGTCCGTTACTATGCCTCAT+GGG 0.599829 3:-100379929 MsG0380017761.01.T01:CDS
ACATAGTAAGTACGAAGGGA+GGG 0.604714 3:+100379099 None:intergenic
ATGTACATAGTAAGTACGAA+GGG 0.605451 3:+100379095 None:intergenic
CATATATCTACATAATAACT+GGG 0.605713 3:+100378987 None:intergenic
GAAGTGGTTATTAATCACCT+TGG 0.607458 3:-100378758 MsG0380017761.01.T01:three_prime_UTR
AGACTGTGAATCACCAGAGA+AGG 0.609518 3:+100379956 None:intergenic
TACATAGTAAGTACGAAGGG+AGG 0.610935 3:+100379098 None:intergenic
ACCAGAGAAGGACCTACTCA+TGG 0.614361 3:+100379968 None:intergenic
GAATTGAAGTGAAGCTACAA+AGG 0.619531 3:-100380646 MsG0380017761.01.T01:CDS
CTGGTGATTCACAGTCTAAG+GGG 0.620120 3:-100379950 MsG0380017761.01.T01:CDS
AGCTAGTAGATGTTGTTCAG+AGG 0.626560 3:-100379580 MsG0380017761.01.T01:CDS
ATCATAGAACGGTCTTACCA+AGG 0.638709 3:+100378741 None:intergenic
AGCTTGAAATGGCTGCATTG+TGG 0.645923 3:-100379769 MsG0380017761.01.T01:CDS
CACACAAGTCTCACAAATCG+AGG 0.652726 3:-100380028 MsG0380017761.01.T01:CDS
GATTTGTCAATGCTGCAAAG+AGG 0.660589 3:-100379222 MsG0380017761.01.T01:CDS
TATGTACATAGTAAGTACGA+AGG 0.666129 3:+100379094 None:intergenic
GGACCCATGAGGCATAGTAA+CGG 0.688810 3:+100379926 None:intergenic
CCACTTCATTAGCCATAGGG+TGG 0.692185 3:+100378774 None:intergenic
CATGTCACAAGACCATGAGT+AGG 0.700516 3:-100379980 MsG0380017761.01.T01:CDS
TGATATACCATGGACCCATG+AGG 0.707981 3:+100379915 None:intergenic
ATATCTACATAATAACTGGG+TGG 0.711276 3:+100378990 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTACTAATATATACAATA+AGG + Chr3:100380541-100380560 None:intergenic 10.0%
!! ATAATTATTAAAAATAGTAC+CGG + Chr3:100379312-100379331 None:intergenic 10.0%
!! TATCAGATAATTTACAAATT+CGG + Chr3:100380018-100380037 None:intergenic 15.0%
!! TTATTAATAATAATTCTGAC+TGG - Chr3:100378905-100378924 MsG0380017761.01.T01:three_prime_UTR 15.0%
!!! TAGTTTATTAATTGTTGTTT+TGG - Chr3:100379145-100379164 MsG0380017761.01.T01:three_prime_UTR 15.0%
!! ACATATATCTACATAATAAC+TGG + Chr3:100380422-100380441 None:intergenic 20.0%
!! CATATATCTACATAATAACT+GGG + Chr3:100380421-100380440 None:intergenic 20.0%
!! CTTACTATGTACATATTAAT+CGG - Chr3:100380319-100380338 MsG0380017761.01.T01:intron 20.0%
!! GGTATATAGAGTAAAAAAAA+AGG + Chr3:100379241-100379260 None:intergenic 20.0%
!! GTTAATCATTATTATTGAGA+TGG + Chr3:100378984-100379003 None:intergenic 20.0%
!! TTACTATGTACATATTAATC+GGG - Chr3:100380320-100380339 MsG0380017761.01.T01:intron 20.0%
!!! AAGATAGAAACTTGATAATA+TGG + Chr3:100379981-100380000 None:intergenic 20.0%
!!! ACCAAAAGATTAGTTATTAT+AGG + Chr3:100379693-100379712 None:intergenic 20.0%
!!! AGCTTAATTGTTTTTTCTTT+AGG + Chr3:100379025-100379044 None:intergenic 20.0%
!!! CTTAATTGTTTTTTCTTTAG+GGG + Chr3:100379023-100379042 None:intergenic 20.0%
!!! CTTAGTACTTACTTTTAAAA+TGG - Chr3:100379763-100379782 MsG0380017761.01.T01:CDS 20.0%
!!! GCTTAATTGTTTTTTCTTTA+GGG + Chr3:100379024-100379043 None:intergenic 20.0%
!!! TCCTATAATAACTAATCTTT+TGG - Chr3:100379689-100379708 MsG0380017761.01.T01:intron 20.0%
!!! TTAATAGTTTAAGGTTATAG+AGG - Chr3:100380372-100380391 MsG0380017761.01.T01:intron 20.0%
! AATTTGAACTGTTGTAATTG+AGG - Chr3:100379937-100379956 MsG0380017761.01.T01:CDS 25.0%
! AGTAGTAGGTTAATAGTTTA+AGG - Chr3:100380363-100380382 MsG0380017761.01.T01:intron 25.0%
! AGTTGAATCACATTAATTCT+AGG + Chr3:100379064-100379083 None:intergenic 25.0%
! TATCTTATTGAAGATGCTTA+TGG - Chr3:100379718-100379737 MsG0380017761.01.T01:intron 25.0%
! TATTTATTTATTGACCCTAC+CGG - Chr3:100379290-100379309 MsG0380017761.01.T01:intron 25.0%
! TCATTATTATTGAGATGGAA+TGG + Chr3:100378979-100378998 None:intergenic 25.0%
!! AAGTTCTACAACAAACTTTT+AGG + Chr3:100380069-100380088 None:intergenic 25.0%
!! AATAATTTTTATGTACCAGC+TGG + Chr3:100379862-100379881 None:intergenic 25.0%
!! ACAAGAGTTCTTTATTTCAA+TGG + Chr3:100379915-100379934 None:intergenic 25.0%
!! ATAATTTTTATGTACCAGCT+GGG + Chr3:100379861-100379880 None:intergenic 25.0%
!! CATATTTCTGATATAGTAGT+AGG - Chr3:100380349-100380368 MsG0380017761.01.T01:intron 25.0%
!!! TACTTTTAAAATGGATTTGC+AGG - Chr3:100379772-100379791 MsG0380017761.01.T01:CDS 25.0%
!!! TATTAAAAATAGTACCGGTA+GGG + Chr3:100379307-100379326 None:intergenic 25.0%
!!! TTATTAAAAATAGTACCGGT+AGG + Chr3:100379308-100379327 None:intergenic 25.0%
AAAATTATCTAATGCGTCAG+TGG + Chr3:100379548-100379567 None:intergenic 30.0%
ATATCTACATAATAACTGGG+TGG + Chr3:100380418-100380437 None:intergenic 30.0%
ATGTACATAGTAAGTACGAA+GGG + Chr3:100380313-100380332 None:intergenic 30.0%
ATTGCACGTTATCAAATTCA+AGG + Chr3:100378835-100378854 None:intergenic 30.0%
CAAGAAAGAAACACAATTTC+AGG + Chr3:100380130-100380149 None:intergenic 30.0%
TATGTACATAGTAAGTACGA+AGG + Chr3:100380314-100380333 None:intergenic 30.0%
TTTCTTTCTTGTGAAGCAAA+TGG - Chr3:100380139-100380158 MsG0380017761.01.T01:intron 30.0%
! AGGTACTAATTACTCTTTTG+TGG - Chr3:100380392-100380411 MsG0380017761.01.T01:intron 30.0%
! CGGTTCTGTTTTATCTTAAA+GGG - Chr3:100378933-100378952 MsG0380017761.01.T01:three_prime_UTR 30.0%
! CTTTGTATATTTTCTGCAGA+AGG - Chr3:100379601-100379620 MsG0380017761.01.T01:CDS 30.0%
! GATTTAAAGCTGATATACCA+TGG + Chr3:100379503-100379522 None:intergenic 30.0%
!! TTGAATTTGATAACGTGCAA+TGG - Chr3:100378834-100378853 MsG0380017761.01.T01:three_prime_UTR 30.0%
!!! TTTTAAAATGGATTTGCAGG+TGG - Chr3:100379775-100379794 MsG0380017761.01.T01:CDS 30.0%
AATAATTCTGACTGGTACTG+CGG - Chr3:100378913-100378932 MsG0380017761.01.T01:three_prime_UTR 35.0%
ATAACCACTTCATTAGCCAT+AGG + Chr3:100380638-100380657 None:intergenic 35.0%
ATTTGTCAATGCTGCAAAGA+GGG - Chr3:100380184-100380203 MsG0380017761.01.T01:intron 35.0%
CAATGGAATGGATCAGATAT+GGG - Chr3:100378851-100378870 MsG0380017761.01.T01:three_prime_UTR 35.0%
CACAGAATGCATAGATCATT+GGG - Chr3:100379400-100379419 MsG0380017761.01.T01:intron 35.0%
CAGAAACAAGTACTAGTACT+CGG + Chr3:100379101-100379120 None:intergenic 35.0%
CTGATATGCATGAATTGTGA+TGG - Chr3:100380032-100380051 MsG0380017761.01.T01:CDS 35.0%
GAAGTGGTTATTAATCACCT+TGG - Chr3:100380647-100380666 MsG0380017761.01.T01:CDS 35.0%
GAATTGAAGTGAAGCTACAA+AGG - Chr3:100378759-100378778 MsG0380017761.01.T01:three_prime_UTR 35.0%
GATATATGTGACCTTGAAAC+TGG - Chr3:100380433-100380452 MsG0380017761.01.T01:intron 35.0%
GGAAAAAAAGACACGCATAA+AGG + Chr3:100379220-100379239 None:intergenic 35.0%
GTTTGCAAAGTGATAGAGTT+TGG - Chr3:100379183-100379202 MsG0380017761.01.T01:exon 35.0%
TAACCACTTCATTAGCCATA+GGG + Chr3:100380637-100380656 None:intergenic 35.0%
TACAAATTCGGCGTAATTTG+TGG + Chr3:100380006-100380025 None:intergenic 35.0%
! GCAAAACACTAGAGTCTTTT+TGG + Chr3:100379262-100379281 None:intergenic 35.0%
! GCGGTTCTGTTTTATCTTAA+AGG - Chr3:100378932-100378951 MsG0380017761.01.T01:three_prime_UTR 35.0%
! GTGATAGAGTTTGGTAACAT+TGG - Chr3:100379192-100379211 MsG0380017761.01.T01:exon 35.0%
!! TTTGATAACGTGCAATGGAA+TGG - Chr3:100378839-100378858 MsG0380017761.01.T01:three_prime_UTR 35.0%
ACATAGTAAGTACGAAGGGA+GGG + Chr3:100380309-100380328 None:intergenic 40.0%
AGACTGTGTGCAAATGAGAT+TGG - Chr3:100380210-100380229 MsG0380017761.01.T01:intron 40.0%
AGCTAGTAGATGTTGTTCAG+AGG - Chr3:100379825-100379844 MsG0380017761.01.T01:intron 40.0%
ATCATAGAACGGTCTTACCA+AGG + Chr3:100380667-100380686 None:intergenic 40.0%
ATCATCTTCTTCATTGCCAG+TGG + Chr3:100378810-100378829 None:intergenic 40.0%
GAACATCGAAAAGAAAGCCT+TGG + Chr3:100380474-100380493 None:intergenic 40.0%
GATTTGTCAATGCTGCAAAG+AGG - Chr3:100380183-100380202 MsG0380017761.01.T01:intron 40.0%
GCAATGGAATGGATCAGATA+TGG - Chr3:100378850-100378869 MsG0380017761.01.T01:three_prime_UTR 40.0%
GCACAGAATGCATAGATCAT+TGG - Chr3:100379399-100379418 MsG0380017761.01.T01:intron 40.0%
TACATAGTAAGTACGAAGGG+AGG + Chr3:100380310-100380329 None:intergenic 40.0%
TATCTAATGCGTCAGTGGTA+GGG + Chr3:100379543-100379562 None:intergenic 40.0%
TCATCTTCTTCATTGCCAGT+GGG + Chr3:100378809-100378828 None:intergenic 40.0%
TCTATCACTTTGCAAACCCA+TGG + Chr3:100379180-100379199 None:intergenic 40.0%
TCTGGTGATTCACAGTCTAA+GGG - Chr3:100379454-100379473 MsG0380017761.01.T01:intron 40.0%
TGACTTGAGCAAGCTTGAAA+TGG - Chr3:100379625-100379644 MsG0380017761.01.T01:intron 40.0%
TTATCTAATGCGTCAGTGGT+AGG + Chr3:100379544-100379563 None:intergenic 40.0%
ACTTTGCAAACCCATGGTCA+TGG + Chr3:100379174-100379193 None:intergenic 45.0%
AGACTGTGAATCACCAGAGA+AGG + Chr3:100379452-100379471 None:intergenic 45.0%
AGCTTGAAATGGCTGCATTG+TGG - Chr3:100379636-100379655 MsG0380017761.01.T01:intron 45.0%
CACACAAGTCTCACAAATCG+AGG - Chr3:100379377-100379396 MsG0380017761.01.T01:intron 45.0%
CATAGTAAGTACGAAGGGAG+GGG + Chr3:100380308-100380327 None:intergenic 45.0%
CATGTCACAAGACCATGAGT+AGG - Chr3:100379425-100379444 MsG0380017761.01.T01:intron 45.0%
CTACTAGCTGCTCCTTTGAT+GGG + Chr3:100379814-100379833 None:intergenic 45.0%
CTCTGGTGATTCACAGTCTA+AGG - Chr3:100379453-100379472 MsG0380017761.01.T01:intron 45.0%
CTGGTGATTCACAGTCTAAG+GGG - Chr3:100379455-100379474 MsG0380017761.01.T01:intron 45.0%
GACCTTGAAACTGGTCGTAA+GGG - Chr3:100380442-100380461 MsG0380017761.01.T01:intron 45.0%
GACGAGTTGCAGGTCATTAA+GGG - Chr3:100380161-100380180 MsG0380017761.01.T01:intron 45.0%
TCTACTAGCTGCTCCTTTGA+TGG + Chr3:100379815-100379834 None:intergenic 45.0%
TGACCTTGAAACTGGTCGTA+AGG - Chr3:100380441-100380460 MsG0380017761.01.T01:intron 45.0%
TGATATACCATGGACCCATG+AGG + Chr3:100379493-100379512 None:intergenic 45.0%
TGGCTGCATTGTGGAGATAT+TGG - Chr3:100379645-100379664 MsG0380017761.01.T01:intron 45.0%
TTCCCTTACGACCAGTTTCA+AGG + Chr3:100380447-100380466 None:intergenic 45.0%
!!! GTTTTGGCTTCCATGACCAT+GGG - Chr3:100379161-100379180 MsG0380017761.01.T01:three_prime_UTR 45.0%
!!! TGTTTTGGCTTCCATGACCA+TGG - Chr3:100379160-100379179 MsG0380017761.01.T01:three_prime_UTR 45.0%
!! CATTAATAATTAAAATATTA+AGG + Chr3:100379574-100379593 None:intergenic 5.0%
ACCAGAGAAGGACCTACTCA+TGG + Chr3:100379440-100379459 None:intergenic 50.0%
ACCATGAGTAGGTCCTTCTC+TGG - Chr3:100379436-100379455 MsG0380017761.01.T01:intron 50.0%
CCACCCTATGGCTAATGAAG+TGG - Chr3:100380631-100380650 MsG0380017761.01.T01:CDS 50.0%
CCACTTCATTAGCCATAGGG+TGG + Chr3:100380634-100380653 None:intergenic 50.0%
CGATGTATTGCTGACCTGCT+GGG - Chr3:100380498-100380517 MsG0380017761.01.T01:intron 50.0%
CTAAAAGCTCACTTCCCAGC+AGG + Chr3:100380515-100380534 None:intergenic 50.0%
CTTCATTAGCCATAGGGTGG+TGG + Chr3:100380631-100380650 None:intergenic 50.0%
GAAGCAAATGGACGAGTTGC+AGG - Chr3:100380151-100380170 MsG0380017761.01.T01:intron 50.0%
GGACCCATGAGGCATAGTAA+CGG + Chr3:100379482-100379501 None:intergenic 50.0%
GGACGAGTTGCAGGTCATTA+AGG - Chr3:100380160-100380179 MsG0380017761.01.T01:intron 50.0%
GGTCCGTTACTATGCCTCAT+GGG - Chr3:100379476-100379495 MsG0380017761.01.T01:intron 50.0%
TACTATGCCTCATGGGTCCA+TGG - Chr3:100379483-100379502 MsG0380017761.01.T01:intron 50.0%
TCGATGTATTGCTGACCTGC+TGG - Chr3:100380497-100380516 MsG0380017761.01.T01:intron 50.0%
TGTCGTCCCAAACCCATCAA+AGG - Chr3:100379799-100379818 MsG0380017761.01.T01:intron 50.0%
!! AGCTGCTCCTTTGATGGGTT+TGG + Chr3:100379809-100379828 None:intergenic 50.0%
!! GCTGCTCCTTTGATGGGTTT+GGG + Chr3:100379808-100379827 None:intergenic 50.0%
GGGTCCGTTACTATGCCTCA+TGG - Chr3:100379475-100379494 MsG0380017761.01.T01:intron 55.0%
GGTCGTAAGGGAAGTCTCCA+AGG - Chr3:100380454-100380473 MsG0380017761.01.T01:intron 55.0%
! AGCGTGATTGAAGCACCCAC+TGG - Chr3:100378791-100378810 MsG0380017761.01.T01:three_prime_UTR 55.0%
! CATTAGCCATAGGGTGGTGG+CGG + Chr3:100380628-100380647 None:intergenic 55.0%
! GAGGCATTTCATGTCCCAGC+TGG - Chr3:100379844-100379863 MsG0380017761.01.T01:intron 55.0%
GCCAATCCGCCACCACCCTA+TGG - Chr3:100380619-100380638 MsG0380017761.01.T01:CDS 65.0%
!! GCCATAGGGTGGTGGCGGAT+TGG + Chr3:100380623-100380642 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100378740 100380687 100378740 ID=MsG0380017761.01;Name=MsG0380017761.01
Chr3 mRNA 100378740 100380687 100378740 ID=MsG0380017761.01.T01;Parent=MsG0380017761.01;Name=MsG0380017761.01.T01;_AED=0.35;_eAED=0.36;_QI=0|1|0.8|1|1|1|5|461|159
Chr3 exon 100378740 100379272 100378740 ID=MsG0380017761.01.T01:exon:13021;Parent=MsG0380017761.01.T01
Chr3 exon 100379562 100379633 100379562 ID=MsG0380017761.01.T01:exon:13020;Parent=MsG0380017761.01.T01
Chr3 exon 100379745 100379807 100379745 ID=MsG0380017761.01.T01:exon:13019;Parent=MsG0380017761.01.T01
Chr3 exon 100379923 100380062 100379923 ID=MsG0380017761.01.T01:exon:13018;Parent=MsG0380017761.01.T01
Chr3 exon 100380555 100380687 100380555 ID=MsG0380017761.01.T01:exon:13017;Parent=MsG0380017761.01.T01
Chr3 CDS 100380555 100380687 100380555 ID=MsG0380017761.01.T01:cds;Parent=MsG0380017761.01.T01
Chr3 CDS 100379923 100380062 100379923 ID=MsG0380017761.01.T01:cds;Parent=MsG0380017761.01.T01
Chr3 CDS 100379745 100379807 100379745 ID=MsG0380017761.01.T01:cds;Parent=MsG0380017761.01.T01
Chr3 CDS 100379562 100379633 100379562 ID=MsG0380017761.01.T01:cds;Parent=MsG0380017761.01.T01
Chr3 CDS 100379201 100379272 100379201 ID=MsG0380017761.01.T01:cds;Parent=MsG0380017761.01.T01
Chr3 three_prime_UTR 100378740 100379200 100378740 ID=MsG0380017761.01.T01:three_prime_utr;Parent=MsG0380017761.01.T01
Gene Sequence

>MsG0380017761.01.T01

ATGCAGGTTCTTACTAATGGAATTGAAGTGAAGCTACAAAGGAATGCTCTTAGCGTGATTGAAGCACCCACTGGCAATGAAGAAGATGATGACCTTGAATTTGATAACGTGCAATGGAATGGATCAGATATGGCATCAGACGATACACACAAGTCTCACAAATCGAGGCACAGAATGCATAGATCATTGGGATCATGTCACAAGACCATGAGTAGGTCCTTCTCTGGTGATTCACAGTCTAAGGGGTCCGTTACTATGCCTCATGGGTCCATGAAGGTTGACTTGAGCAAGCTTGAAATGGCTGCATTGTGGAGATATTGGAGACATTTTAATCTTGTGGATGTCGTCCCAAACCCATCAAAGGAGCAGCTAGTAGATGTTGTTCAGAGGCATTTCATGTCCCAGCTGCAAATGGACGAGTTGCAGGTCATTAAGGGATTTGTCAATGCTGCAAAGAGGGTCAAGACTGTGTGCAAATGA
Protein sequence

>MsG0380017761.01.T01

MQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVQWNGSDMASDDTHKSHKSRHRMHRSLGSCHKTMSRSFSGDSQSKGSVTMPHGSMKVDLSKLEMAALWRYWRHFNLVDVVPNPSKEQLVDVVQRHFMSQLQMDELQVIKGFVNAAKRVKTVCK*