AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018231.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018231.01.T01 MTR_4g007890 89.144 479 52 0 1 479 1 479 0.0 886
MsG0480018231.01.T01 MTR_4g007890 28.632 234 136 6 99 328 369 575 1.57e-22 101
MsG0480018231.01.T01 MTR_1g114170 85.239 481 69 2 1 479 5 485 0.0 849
MsG0480018231.01.T01 MTR_1g114170 30.932 236 129 6 99 328 374 581 5.55e-24 105
MsG0480018231.01.T01 MTR_1g025075 82.744 481 81 2 1 479 6 486 0.0 826
MsG0480018231.01.T01 MTR_1g025075 29.437 231 139 4 99 328 375 582 1.38e-24 107
MsG0480018231.01.T01 MTR_1g024860 73.278 479 106 5 3 479 8 466 0.0 707
MsG0480018231.01.T01 MTR_1g024860 29.534 193 116 3 99 290 355 528 2.09e-20 94.4
MsG0480018231.01.T01 MTR_1g025075 82.308 390 67 2 92 479 17 406 0.0 659
MsG0480018231.01.T01 MTR_1g025075 29.437 231 139 4 99 328 295 502 2.89e-24 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018231.01.T01 AT4G19210 80.208 480 94 1 1 479 5 484 0.0 809
MsG0480018231.01.T01 AT4G19210 33.051 236 123 8 99 328 374 580 1.42e-25 110
MsG0480018231.01.T01 AT3G13640 70.625 480 138 2 1 479 5 482 0.0 715
MsG0480018231.01.T01 AT3G13640 29.237 236 130 5 99 328 374 578 3.42e-21 97.4
MsG0480018231.01.T01 AT4G30300 60.606 132 50 2 350 479 1 132 1.83e-43 152
MsG0480018231.01.T01 AT4G30300 25.140 179 100 5 100 265 21 178 1.33e-11 63.9

Find 114 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAAGTTGGAGCCAAATT+TGG 0.165233 4:-1957559 MsG0480018231.01.T01:CDS
CGTAATGTTGGTGATCTTTC+AGG 0.171930 4:-1956342 MsG0480018231.01.T01:CDS
TATCAACTTGCCGGAGAATT+TGG 0.186930 4:-1957819 MsG0480018231.01.T01:CDS
GTCCACTGCCCTTAGAATTT+TGG 0.194239 4:-1957583 MsG0480018231.01.T01:CDS
TCATATCTCTCTCATTGTTT+TGG 0.229197 4:+1956409 None:intergenic
CCTGAACTTGCCTTGAGTTT+TGG 0.246863 4:+1954421 None:intergenic
ACTTTCCAGCCAAAATTCTA+AGG 0.272957 4:+1957574 None:intergenic
CAACAGAAAATCTTAGGTTT+CGG 0.282822 4:-1955907 MsG0480018231.01.T01:CDS
TTGTTCCAACAGAAAATCTT+AGG 0.290058 4:-1955913 MsG0480018231.01.T01:CDS
ACAGTGAAACGACCCAAATT+TGG 0.292894 4:+1957546 None:intergenic
GATGAATTCTTTCATGTAAC+AGG 0.293045 4:+1954105 None:intergenic
TCATCACATCTGATATAAAC+TGG 0.305491 4:+1954066 None:intergenic
AACAGAAAATCTTAGGTTTC+GGG 0.307649 4:-1955906 MsG0480018231.01.T01:CDS
GACTTTATTTGCTGTTTGTA+TGG 0.317741 4:-1956010 MsG0480018231.01.T01:CDS
GGTCATTGCTAAGGCATAAT+AGG 0.365075 4:-1956197 MsG0480018231.01.T01:intron
CTGTGTAGCTTAAAAGTATT+AGG 0.366567 4:+1957770 None:intergenic
CTTTCGAGATGAGAGTTTGA+AGG 0.373390 4:-1957361 MsG0480018231.01.T01:intron
TAACAGTTGATTTGAACTTT+GGG 0.374527 4:+1954132 None:intergenic
CTAACAGTTGATTTGAACTT+TGG 0.376761 4:+1954131 None:intergenic
CGTTGCCCTGTCGTCATAAC+CGG 0.380336 4:-1958159 MsG0480018231.01.T01:intron
TGTAGTTGGAGGAGAATTTA+CGG 0.386210 4:-1954393 MsG0480018231.01.T01:CDS
ATTGATCACATTCATAAAAC+GGG 0.386877 4:-1956459 MsG0480018231.01.T01:CDS
AATTAAGATTATCAACTTGC+CGG 0.388066 4:-1957828 MsG0480018231.01.T01:CDS
GGAAAGTTGGAGCCAAATTT+GGG 0.390741 4:-1957558 MsG0480018231.01.T01:CDS
GTCAAAATTTCCTGCCAGTC+AGG 0.392453 4:+1957423 None:intergenic
CAACAGCAATGGCAAACCTT+TGG 0.402310 4:+1956310 None:intergenic
CCGAGGCCGGGGAAAGTGCT+TGG 0.412378 4:-1957633 MsG0480018231.01.T01:CDS
ACTTTCCCCGGCCTCGGAAC+CGG 0.412394 4:+1957639 None:intergenic
GGGAAAGTGCTTGGTTTGGT+TGG 0.414362 4:-1957624 MsG0480018231.01.T01:CDS
AGTTGTGTATTATAGGTTGC+CGG 0.415419 4:-1957658 MsG0480018231.01.T01:intron
TATAATACAGGTTAGCTTCA+AGG 0.416213 4:-1956490 MsG0480018231.01.T01:intron
CCAAAACTCAAGGCAAGTTC+AGG 0.420940 4:-1954421 MsG0480018231.01.T01:CDS
AGGTTGCCGGTTCCGAGGCC+GGG 0.422004 4:-1957645 MsG0480018231.01.T01:CDS
GCCGGGGAAAGTGCTTGGTT+TGG 0.422861 4:-1957628 MsG0480018231.01.T01:CDS
GGAATTAATATCTTCTTGTC+TGG 0.423856 4:-1955938 MsG0480018231.01.T01:CDS
ATAATCTTAATTGCTTCAAA+AGG 0.425895 4:+1957839 None:intergenic
GGAAAGTGCTTGGTTTGGTT+GGG 0.426497 4:-1957623 MsG0480018231.01.T01:CDS
TATTGATCACATTCATAAAA+CGG 0.431274 4:-1956460 MsG0480018231.01.T01:CDS
GTTTCCTTATGTCTTTGTCT+TGG 0.432752 4:-1953975 MsG0480018231.01.T01:CDS
GGATGACTCTCTTACCTTCA+AGG 0.434243 4:-1955885 MsG0480018231.01.T01:intron
TAGGTTGCCGGTTCCGAGGC+CGG 0.434876 4:-1957646 MsG0480018231.01.T01:CDS
ATTCCTTCTCTGACTGAGAA+AGG 0.437002 4:+1955956 None:intergenic
ATAGATTATTTATACCTTGA+AGG 0.440136 4:+1955871 None:intergenic
GTAATGTTGGTGATCTTTCA+GGG 0.441278 4:-1956341 MsG0480018231.01.T01:CDS
TCTCAGATTGTTGTTATGCT+TGG 0.451315 4:-1954368 MsG0480018231.01.T01:CDS
GTTGTTATGCTTGGTGAGAA+TGG 0.453138 4:-1954359 MsG0480018231.01.T01:CDS
TGAACACGATCTTAGTGTCT+TGG 0.458360 4:-1956044 MsG0480018231.01.T01:CDS
CTTATGTCTTTGTCTTGGAA+AGG 0.458540 4:-1953970 MsG0480018231.01.T01:CDS
TGGATGTGGTATTTGTGTTA+AGG 0.458616 4:-1957971 MsG0480018231.01.T01:intron
AAAGACACCACTCATAGATA+TGG 0.460544 4:-1957794 MsG0480018231.01.T01:CDS
GTTTGCAGAACCCTCCTGAC+TGG 0.466184 4:-1957437 MsG0480018231.01.T01:intron
GCAGAACCCTCCTGACTGGC+AGG 0.473883 4:-1957433 MsG0480018231.01.T01:intron
TATGGAACACCTGGTGCATA+TGG 0.475475 4:-1955992 MsG0480018231.01.T01:CDS
ACGCGTATTGCCATTGTCAA+TGG 0.480880 4:-1958225 MsG0480018231.01.T01:CDS
CTCACATCAAGATAACTAGA+AGG 0.483153 4:+1956249 None:intergenic
AACTTTGGGTTAATTGTCTG+AGG 0.488966 4:+1954146 None:intergenic
ACCAAACCAAGCACTTTCCC+CGG 0.489846 4:+1957627 None:intergenic
ATCATACCGGTTATGACGAC+AGG 0.490261 4:+1958153 None:intergenic
TGAAAGCTGCCCAAGTTGTC+CGG 0.491384 4:-1956218 MsG0480018231.01.T01:CDS
TGCTGTTTGTATGGAACACC+TGG 0.492329 4:-1956001 MsG0480018231.01.T01:CDS
GTGTCTTTGTCCAAATTCTC+CGG 0.498181 4:+1957809 None:intergenic
TATAGGAAGATTGTGTATTG+AGG 0.500669 4:-1958040 MsG0480018231.01.T01:intron
TTGTTATGCTTGGTGAGAAT+GGG 0.504018 4:-1954358 MsG0480018231.01.T01:CDS
AAGTTCAGGCTTCGTGTAGT+TGG 0.505597 4:-1954407 MsG0480018231.01.T01:CDS
GGTTGCCGGTTCCGAGGCCG+GGG 0.505721 4:-1957644 MsG0480018231.01.T01:CDS
AAACAATGAGAGAGATATGA+AGG 0.508578 4:-1956406 MsG0480018231.01.T01:CDS
CACATTCATAAAACGGGGCA+AGG 0.508774 4:-1956453 MsG0480018231.01.T01:CDS
GACAACATTCATCCGTATGC+TGG 0.519437 4:-1954327 MsG0480018231.01.T01:intron
TTCAGGCTTCGTGTAGTTGG+AGG 0.519982 4:-1954404 MsG0480018231.01.T01:CDS
TAAAACGGGGCAAGGGAACG+TGG 0.521293 4:-1956445 MsG0480018231.01.T01:CDS
TCAGATCCACCTATAGTGTC+AGG 0.525068 4:+1954203 None:intergenic
AGCCAAAATTCTAAGGGCAG+TGG 0.528739 4:+1957581 None:intergenic
CTTTCCAAGACAAAGACATA+AGG 0.539595 4:+1953971 None:intergenic
TTAGCAATGACCGGACAACT+TGG 0.539932 4:+1956208 None:intergenic
TCATTGAAACCTGACACTAT+AGG 0.540340 4:-1954212 MsG0480018231.01.T01:CDS
CAAGTTATAGATCGTAATGT+TGG 0.541369 4:-1956354 MsG0480018231.01.T01:CDS
CATCACATCTGATATAAACT+GGG 0.543431 4:+1954067 None:intergenic
CTTCCTTTCTCAGTCAGAGA+AGG 0.543896 4:-1955959 MsG0480018231.01.T01:CDS
CCAAGCACTTTCCCCGGCCT+CGG 0.544800 4:+1957633 None:intergenic
ACATCCAGTGCACAATTCCT+CGG 0.548548 4:+1957987 None:intergenic
ACTACTTATCGAACAGCTGA+TGG 0.549716 4:-1954039 MsG0480018231.01.T01:CDS
AAAACGGGGCAAGGGAACGT+GGG 0.554809 4:-1956444 MsG0480018231.01.T01:CDS
CTATCCGAGGAATTGTGCAC+TGG 0.564876 4:-1957991 MsG0480018231.01.T01:CDS
TGAGCTTCAGCAGTTTCATG+TGG 0.568344 4:+1954476 None:intergenic
CTTTCCAGCCAAAATTCTAA+GGG 0.572535 4:+1957575 None:intergenic
CACTATAGGTGGATCTGATG+TGG 0.580575 4:-1954198 MsG0480018231.01.T01:CDS
AAGTTGTCCGGTCATTGCTA+AGG 0.581006 4:-1956206 MsG0480018231.01.T01:CDS
TATTATGCCTTAGCAATGAC+CGG 0.582030 4:+1956199 None:intergenic
CAGTGCACAATTCCTCGGAT+AGG 0.583504 4:+1957992 None:intergenic
TTGTGTGAAATATTGAACTC+AGG 0.583680 4:+1954170 None:intergenic
AAAATTTCCTGCCAGTCAGG+AGG 0.583757 4:+1957426 None:intergenic
TAGCAATGACCGGACAACTT+GGG 0.588276 4:+1956209 None:intergenic
ACTAAAAGAATACCAGCATA+CGG 0.589186 4:+1954315 None:intergenic
ATCAGCTGTTCGATAAGTAG+TGG 0.593241 4:+1954041 None:intergenic
GAGGAATTGTGCACTGGATG+TGG 0.596595 4:-1957985 MsG0480018231.01.T01:CDS
TAGGAGGGCAGCAACAGCAA+TGG 0.601333 4:+1956299 None:intergenic
AAATTTCCTGCCAGTCAGGA+GGG 0.605918 4:+1957427 None:intergenic
ATTATAGGTTGCCGGTTCCG+AGG 0.606131 4:-1957650 MsG0480018231.01.T01:intron
ATGCTTGGTGAGAATGGGAC+GGG 0.610087 4:-1954353 MsG0480018231.01.T01:CDS
TAATGTTGGTGATCTTTCAG+GGG 0.618828 4:-1956340 MsG0480018231.01.T01:CDS
AAACGGGGCAAGGGAACGTG+GGG 0.627128 4:-1956443 MsG0480018231.01.T01:CDS
GCATCTGTCTCCATTGACAA+TGG 0.633618 4:+1958215 None:intergenic
ACATTCATAAAACGGGGCAA+GGG 0.634571 4:-1956452 MsG0480018231.01.T01:CDS
TTGAAACCTGACACTATAGG+TGG 0.643934 4:-1954209 MsG0480018231.01.T01:CDS
AATGTTGGTGATCTTTCAGG+GGG 0.657975 4:-1956339 MsG0480018231.01.T01:CDS
CCAACCATGACCAAAACTCA+AGG 0.658017 4:-1954431 MsG0480018231.01.T01:CDS
GAAGATTGCTTACCTATCCG+AGG 0.658534 4:-1958004 MsG0480018231.01.T01:CDS
GTTACGACTCCATATGCACC+AGG 0.659399 4:+1955983 None:intergenic
ATTAGGACCATATCTATGAG+TGG 0.668366 4:+1957787 None:intergenic
GTTATCTTGATGTGAGACAG+AGG 0.675184 4:-1956242 MsG0480018231.01.T01:CDS
TATGCTTGGTGAGAATGGGA+CGG 0.683302 4:-1954354 MsG0480018231.01.T01:CDS
ATCACATCTGATATAAACTG+GGG 0.688133 4:+1954068 None:intergenic
TCATACCGGTTATGACGACA+GGG 0.697152 4:+1958154 None:intergenic
TTGATCACATTCATAAAACG+GGG 0.709656 4:-1956458 MsG0480018231.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACATAATAATTGATAAA+TGG + Chr4:1955011-1955030 None:intergenic 10.0%
!! ATTTATCAATTATTATGTAA+TGG - Chr4:1955010-1955029 MsG0480018231.01.T01:intron 10.0%
!! TATTCTTATAAATTAGATAT+TGG - Chr4:1957346-1957365 MsG0480018231.01.T01:intron 10.0%
!! TTTGTAAAAAAAAAAATTAC+TGG + Chr4:1954961-1954980 None:intergenic 10.0%
!!! AAAAAAAAAAAGAGTTTTTT+TGG - Chr4:1956942-1956961 MsG0480018231.01.T01:intron 10.0%
!!! AAAAAAAAAAGAGTTTTTTT+GGG - Chr4:1956943-1956962 MsG0480018231.01.T01:intron 10.0%
!!! AAAATGTTTTTCAAAATTAA+AGG + Chr4:1955516-1955535 None:intergenic 10.0%
!!! TTATTGATTAATAACTATAT+TGG + Chr4:1956851-1956870 None:intergenic 10.0%
!! ACAATTAACTACTAATAAAT+TGG - Chr4:1956978-1956997 MsG0480018231.01.T01:intron 15.0%
!! TACAAAACGATATTAAATAA+AGG + Chr4:1954867-1954886 None:intergenic 15.0%
!! TTCAATATATGTTATAATAC+AGG - Chr4:1955688-1955707 MsG0480018231.01.T01:intron 15.0%
!!! AAAAAAAAAAAGGCTAATTT+TGG + Chr4:1954675-1954694 None:intergenic 15.0%
!!! ATAAGAATATTTTCATTTTG+AGG + Chr4:1957335-1957354 None:intergenic 15.0%
!!! GTTTTTCTGATTTTTTTTAT+TGG - Chr4:1954984-1955003 MsG0480018231.01.T01:intron 15.0%
!!! TACCATTAGAAAAATATTTT+GGG - Chr4:1956782-1956801 MsG0480018231.01.T01:intron 15.0%
!!! TACTAATAAATTGGTTTAAT+GGG - Chr4:1956987-1957006 MsG0480018231.01.T01:intron 15.0%
!!! TATTTGTTAATTGGTATAAT+AGG - Chr4:1956882-1956901 MsG0480018231.01.T01:intron 15.0%
!!! TGAAATTTTATGTTAATGTT+TGG - Chr4:1954084-1954103 MsG0480018231.01.T01:CDS 15.0%
!!! TTACCATTAGAAAAATATTT+TGG - Chr4:1956781-1956800 MsG0480018231.01.T01:intron 15.0%
!!! TTTTTATTCAAATAAACTCA+TGG - Chr4:1956513-1956532 MsG0480018231.01.T01:intron 15.0%
!! AGAATTTCTTTAATTGAGAA+GGG - Chr4:1955060-1955079 MsG0480018231.01.T01:intron 20.0%
!! ATAATCTTAATTGCTTCAAA+AGG + Chr4:1954354-1954373 None:intergenic 20.0%
!! ATAGATTATTTATACCTTGA+AGG + Chr4:1956322-1956341 None:intergenic 20.0%
!! CACGGTATAAAAAAAAAAAA+AGG + Chr4:1954685-1954704 None:intergenic 20.0%
!! TAGAATTTCTTTAATTGAGA+AGG - Chr4:1955059-1955078 MsG0480018231.01.T01:intron 20.0%
!! TATTGATCACATTCATAAAA+CGG - Chr4:1955730-1955749 MsG0480018231.01.T01:intron 20.0%
!!! AGGAAATTTTGACTTATTAT+CGG - Chr4:1954777-1954796 MsG0480018231.01.T01:intron 20.0%
!!! ATGTTTATTTCTACATTACA+AGG + Chr4:1955401-1955420 None:intergenic 20.0%
!!! ATTAGAAAAATATTTTGGGA+AGG - Chr4:1956786-1956805 MsG0480018231.01.T01:intron 20.0%
!!! ATTCAGAAACCAAATATTTT+CGG + Chr4:1956490-1956509 None:intergenic 20.0%
!!! CATATTAACACAGAATTTTT+AGG + Chr4:1954468-1954487 None:intergenic 20.0%
!!! CTACTAATAAATTGGTTTAA+TGG - Chr4:1956986-1957005 MsG0480018231.01.T01:intron 20.0%
!!! CTTTTTTTTTTTTTATACCG+TGG - Chr4:1954683-1954702 MsG0480018231.01.T01:intron 20.0%
!!! CTTTTTTTTTTTTTTTGACC+TGG + Chr4:1956934-1956953 None:intergenic 20.0%
!!! TATCTTATTGATTTAGACTT+TGG - Chr4:1954899-1954918 MsG0480018231.01.T01:intron 20.0%
!!! TGCAATACTATAAATTTTGT+AGG + Chr4:1956691-1956710 None:intergenic 20.0%
!!! TTCCCAAAATATTTTTCTAA+TGG + Chr4:1956787-1956806 None:intergenic 20.0%
!!! TTGTTAGAACTTTTAGATAT+TGG - Chr4:1957293-1957312 MsG0480018231.01.T01:intron 20.0%
!!! TTTTTTTTGACAAATATGTG+TGG + Chr4:1956738-1956757 None:intergenic 20.0%
! AAATTCAGATTTATCTTGAC+TGG + Chr4:1956090-1956109 None:intergenic 25.0%
! AAGAAATTCTACAACACTAT+AGG + Chr4:1955050-1955069 None:intergenic 25.0%
! AATGGTAAGAAATTTATGTG+TGG + Chr4:1956769-1956788 None:intergenic 25.0%
! AATTAAGATTATCAACTTGC+CGG - Chr4:1954362-1954381 MsG0480018231.01.T01:CDS 25.0%
! ATGATTATGCGTGTAATTAT+AGG - Chr4:1954133-1954152 MsG0480018231.01.T01:CDS 25.0%
! ATGGAATATAAAGCCAATTT+GGG - Chr4:1956358-1956377 MsG0480018231.01.T01:CDS 25.0%
! ATTGATCACATTCATAAAAC+GGG - Chr4:1955731-1955750 MsG0480018231.01.T01:intron 25.0%
! CAATTATTATGTAATGGTAG+AGG - Chr4:1955016-1955035 MsG0480018231.01.T01:intron 25.0%
! GTTCTAACAAAATATAAGCA+TGG + Chr4:1957283-1957302 None:intergenic 25.0%
! TATCTATCTATCTATCTATG+CGG + Chr4:1955282-1955301 None:intergenic 25.0%
! TATGGAATATAAAGCCAATT+TGG - Chr4:1956357-1956376 MsG0480018231.01.T01:CDS 25.0%
! TGCACATTCAGAAAAATATA+AGG + Chr4:1955570-1955589 None:intergenic 25.0%
! TTATGAAGTCCTTATATTCA+AGG - Chr4:1956583-1956602 MsG0480018231.01.T01:intron 25.0%
!! ACTTTTCTCAATTCTATTGT+TGG + Chr4:1956463-1956482 None:intergenic 25.0%
!! TAGATAGATAATCTTTGAAG+AGG - Chr4:1955296-1955315 MsG0480018231.01.T01:intron 25.0%
!! TTTTGTCTACCTTGAATATA+AGG + Chr4:1956595-1956614 None:intergenic 25.0%
!!! AAAAAAGAGTTTTTTTGGGA+AGG - Chr4:1956947-1956966 MsG0480018231.01.T01:intron 25.0%
!!! AAAGAAGTTTTGAATCTTTC+TGG - Chr4:1958176-1958195 MsG0480018231.01.T01:CDS 25.0%
!!! AACAAAAAAACGCGTTTTTT+TGG - Chr4:1957039-1957058 MsG0480018231.01.T01:intron 25.0%
!!! ACAAAAAAACGCGTTTTTTT+GGG - Chr4:1957040-1957059 MsG0480018231.01.T01:intron 25.0%
!!! GAAATTTTGACTTATTATCG+GGG - Chr4:1954779-1954798 MsG0480018231.01.T01:intron 25.0%
!!! GGAAATTTTGACTTATTATC+GGG - Chr4:1954778-1954797 MsG0480018231.01.T01:intron 25.0%
!!! TAACAGTTGATTTGAACTTT+GGG + Chr4:1958061-1958080 None:intergenic 25.0%
!!! TGGCTTTATATTCCATAAAT+GGG + Chr4:1956354-1956373 None:intergenic 25.0%
!!! TTGGCTTTATATTCCATAAA+TGG + Chr4:1956355-1956374 None:intergenic 25.0%
AAAAGCGATACACTAATTCA+TGG - Chr4:1955169-1955188 MsG0480018231.01.T01:intron 30.0%
AAACAATGAGAGAGATATGA+AGG - Chr4:1955784-1955803 MsG0480018231.01.T01:intron 30.0%
AACAGAAAATCTTAGGTTTC+GGG - Chr4:1956284-1956303 MsG0480018231.01.T01:CDS 30.0%
AACAGTATCAAAGTTGAACT+CGG + Chr4:1955334-1955353 None:intergenic 30.0%
AATGAACCAACCTGAATAAA+AGG + Chr4:1957963-1957982 None:intergenic 30.0%
ACACCACTACAAAAAAGAAA+AGG + Chr4:1957464-1957483 None:intergenic 30.0%
ACTAAAAGAATACCAGCATA+CGG + Chr4:1957878-1957897 None:intergenic 30.0%
AGTACTGCAGTAATACAAAT+TGG - Chr4:1955371-1955390 MsG0480018231.01.T01:intron 30.0%
ATATAAGGACAACAAATGCT+AGG + Chr4:1955555-1955574 None:intergenic 30.0%
ATCACATCTGATATAAACTG+GGG + Chr4:1958125-1958144 None:intergenic 30.0%
ATGTTGACGTTTCATTAACT+GGG - Chr4:1955105-1955124 MsG0480018231.01.T01:intron 30.0%
ATTATTGTCTAGTGGTGTAT+TGG - Chr4:1956817-1956836 MsG0480018231.01.T01:intron 30.0%
CAACAGAAAATCTTAGGTTT+CGG - Chr4:1956283-1956302 MsG0480018231.01.T01:CDS 30.0%
CAAGTTATAGATCGTAATGT+TGG - Chr4:1955836-1955855 MsG0480018231.01.T01:intron 30.0%
CATCACATCTGATATAAACT+GGG + Chr4:1958126-1958145 None:intergenic 30.0%
CGGGAAAAAAAAGATTACAA+AGG + Chr4:1957515-1957534 None:intergenic 30.0%
CTTTATATTCCATAAATGGG+AGG + Chr4:1956351-1956370 None:intergenic 30.0%
GATGAATTCTTTCATGTAAC+AGG + Chr4:1958088-1958107 None:intergenic 30.0%
GGAATTAATATCTTCTTGTC+TGG - Chr4:1956252-1956271 MsG0480018231.01.T01:CDS 30.0%
TAAGCACATTAGAAACCAAA+AGG + Chr4:1955667-1955686 None:intergenic 30.0%
TATAAATGATGCATCGCAAA+AGG + Chr4:1956548-1956567 None:intergenic 30.0%
TATAGGAAGATTGTGTATTG+AGG - Chr4:1954150-1954169 MsG0480018231.01.T01:CDS 30.0%
TCAAGAGAGTTGTGTATTAT+AGG - Chr4:1954525-1954544 MsG0480018231.01.T01:intron 30.0%
TCAATCAATCTCAGTATTGT+AGG + Chr4:1956420-1956439 None:intergenic 30.0%
TCATCACATCTGATATAAAC+TGG + Chr4:1958127-1958146 None:intergenic 30.0%
TTATTGTCTAGTGGTGTATT+GGG - Chr4:1956818-1956837 MsG0480018231.01.T01:intron 30.0%
TTCAACAACAATTACATAGC+TGG + Chr4:1956130-1956149 None:intergenic 30.0%
TTGATCACATTCATAAAACG+GGG - Chr4:1955732-1955751 MsG0480018231.01.T01:intron 30.0%
TTGTGTGAAATATTGAACTC+AGG + Chr4:1958023-1958042 None:intergenic 30.0%
TTGTTCCAACAGAAAATCTT+AGG - Chr4:1956277-1956296 MsG0480018231.01.T01:CDS 30.0%
TTTATCTTGACTGGAAATCA+AGG + Chr4:1956081-1956100 None:intergenic 30.0%
TTTCACGAATTATTGTCTAG+TGG - Chr4:1956809-1956828 MsG0480018231.01.T01:intron 30.0%
! AAAGTAGTGCCGAAAATATT+TGG - Chr4:1956478-1956497 MsG0480018231.01.T01:CDS 30.0%
! ACATGTATATCTCAGCTTTT+AGG + Chr4:1955913-1955932 None:intergenic 30.0%
! ACTGCAGTACTTTTATGATA+TGG + Chr4:1955362-1955381 None:intergenic 30.0%
! ATAGATAATCTTTGAAGAGG+TGG - Chr4:1955299-1955318 MsG0480018231.01.T01:intron 30.0%
! CTAATACTTTTAAGCTACAC+AGG - Chr4:1954421-1954440 MsG0480018231.01.T01:CDS 30.0%
! TAGATAATCTTTGAAGAGGT+GGG - Chr4:1955300-1955319 MsG0480018231.01.T01:intron 30.0%
! TCATATCTCTCTCATTGTTT+TGG + Chr4:1955784-1955803 None:intergenic 30.0%
! TTAAGAAAGGTTCTTCCTTT+TGG - Chr4:1955649-1955668 MsG0480018231.01.T01:intron 30.0%
!! ATTTGTGTTAAGGTATTGAG+AGG - Chr4:1954229-1954248 MsG0480018231.01.T01:intron 30.0%
!! CTAACAGTTGATTTGAACTT+TGG + Chr4:1958062-1958081 None:intergenic 30.0%
!! CTGTGTAGCTTAAAAGTATT+AGG + Chr4:1954423-1954442 None:intergenic 30.0%
!! CTTATTGATTTAGACTTTGG+TGG - Chr4:1954902-1954921 MsG0480018231.01.T01:intron 30.0%
!! GACTTTATTTGCTGTTTGTA+TGG - Chr4:1956180-1956199 MsG0480018231.01.T01:intron 30.0%
!! GTTCCTTTTCTTTTTTGTAG+TGG - Chr4:1957458-1957477 MsG0480018231.01.T01:intron 30.0%
!! TATAATACAGGTTAGCTTCA+AGG - Chr4:1955700-1955719 MsG0480018231.01.T01:intron 30.0%
!!! TTTTTTTTTATACCGTGGAG+TGG - Chr4:1954688-1954707 MsG0480018231.01.T01:intron 30.0%
AAAGACACCACTCATAGATA+TGG - Chr4:1954396-1954415 MsG0480018231.01.T01:CDS 35.0%
AACAAAACACCGAATCATAC+CGG + Chr4:1954053-1954072 None:intergenic 35.0%
ACTTTCCAGCCAAAATTCTA+AGG + Chr4:1954619-1954638 None:intergenic 35.0%
AGGATAACAGTATCGTGAAT+CGG - Chr4:1956640-1956659 MsG0480018231.01.T01:intron 35.0%
AGTTGTGTATTATAGGTTGC+CGG - Chr4:1954532-1954551 MsG0480018231.01.T01:intron 35.0%
ATATTCCATAAATGGGAGGT+AGG + Chr4:1956347-1956366 None:intergenic 35.0%
ATGTTGACATTGACATTAGC+TGG - Chr4:1955198-1955217 MsG0480018231.01.T01:intron 35.0%
ATTAGGACCATATCTATGAG+TGG + Chr4:1954406-1954425 None:intergenic 35.0%
CAATACTGAGATTGATTGAG+TGG - Chr4:1956421-1956440 MsG0480018231.01.T01:CDS 35.0%
CATGTTGACGTTTCATTAAC+TGG - Chr4:1955104-1955123 MsG0480018231.01.T01:intron 35.0%
CTAGACACAACATTAAAGCA+GGG + Chr4:1957682-1957701 None:intergenic 35.0%
CTCACATCAAGATAACTAGA+AGG + Chr4:1955944-1955963 None:intergenic 35.0%
CTTATGTCTTTGTCTTGGAA+AGG - Chr4:1958220-1958239 MsG0480018231.01.T01:CDS 35.0%
CTTTCCAAGACAAAGACATA+AGG + Chr4:1958222-1958241 None:intergenic 35.0%
CTTTCCAGCCAAAATTCTAA+GGG + Chr4:1954618-1954637 None:intergenic 35.0%
GATAGTGTGACACTTAAGAA+AGG - Chr4:1955636-1955655 MsG0480018231.01.T01:intron 35.0%
GTTTCCTTATGTCTTTGTCT+TGG - Chr4:1958215-1958234 MsG0480018231.01.T01:CDS 35.0%
TATTATGCCTTAGCAATGAC+CGG + Chr4:1955994-1956013 None:intergenic 35.0%
TCATTGAAACCTGACACTAT+AGG - Chr4:1957978-1957997 MsG0480018231.01.T01:CDS 35.0%
TGATTGTCTTCTTGAAATCC+CGG + Chr4:1957111-1957130 None:intergenic 35.0%
TGGATGTGGTATTTGTGTTA+AGG - Chr4:1954219-1954238 MsG0480018231.01.T01:CDS 35.0%
TGGTTGGGAAAAATGGAATT+GGG - Chr4:1954582-1954601 MsG0480018231.01.T01:intron 35.0%
TGTAGTTGGAGGAGAATTTA+CGG - Chr4:1957797-1957816 MsG0480018231.01.T01:CDS 35.0%
TGTTGACATTGACATTAGCT+GGG - Chr4:1955199-1955218 MsG0480018231.01.T01:intron 35.0%
TTGGTTGGGAAAAATGGAAT+TGG - Chr4:1954581-1954600 MsG0480018231.01.T01:intron 35.0%
TTTAGGTAACCACAGCTAAA+AGG + Chr4:1954451-1954470 None:intergenic 35.0%
! AACTTTGGGTTAATTGTCTG+AGG + Chr4:1958047-1958066 None:intergenic 35.0%
! AGATAATCTTTGAAGAGGTG+GGG - Chr4:1955301-1955320 MsG0480018231.01.T01:intron 35.0%
! ATGATTTTGCGACGATAATC+TGG - Chr4:1954285-1954304 MsG0480018231.01.T01:intron 35.0%
! CGAAACCTAAGATTTTCTGT+TGG + Chr4:1956285-1956304 None:intergenic 35.0%
! TCTCAGATTGTTGTTATGCT+TGG - Chr4:1957822-1957841 MsG0480018231.01.T01:CDS 35.0%
! TGATTTTGCGACGATAATCT+GGG - Chr4:1954286-1954305 MsG0480018231.01.T01:intron 35.0%
! TGTATATCTCAGCTTTTAGG+AGG + Chr4:1955910-1955929 None:intergenic 35.0%
! TTGTTATGCTTGGTGAGAAT+GGG - Chr4:1957832-1957851 MsG0480018231.01.T01:CDS 35.0%
! TTTTTGTAGTGGTGTGTTGT+CGG - Chr4:1957469-1957488 MsG0480018231.01.T01:intron 35.0%
!! GTAATGTTGGTGATCTTTCA+GGG - Chr4:1955849-1955868 MsG0480018231.01.T01:intron 35.0%
!! GTATATCTCAGCTTTTAGGA+GGG + Chr4:1955909-1955928 None:intergenic 35.0%
!! TAATGTTGGTGATCTTTCAG+GGG - Chr4:1955850-1955869 MsG0480018231.01.T01:intron 35.0%
!!! GAAGTTTTGAATCTTTCTGG+TGG - Chr4:1958179-1958198 MsG0480018231.01.T01:CDS 35.0%
!!! TAGAATTTTGGCTGGAAAGT+TGG - Chr4:1954619-1954638 MsG0480018231.01.T01:intron 35.0%
!!! TTTCTGAAGTTTTTCGAAGC+CGG - Chr4:1957063-1957082 MsG0480018231.01.T01:intron 35.0%
ACAGTGAAACGACCCAAATT+TGG + Chr4:1954647-1954666 None:intergenic 40.0%
ACATTCATAAAACGGGGCAA+GGG - Chr4:1955738-1955757 MsG0480018231.01.T01:intron 40.0%
ACTACTTATCGAACAGCTGA+TGG - Chr4:1958151-1958170 MsG0480018231.01.T01:intron 40.0%
AGATGCAAGCCAAAAAAGTG+TGG - Chr4:1953992-1954011 MsG0480018231.01.T01:CDS 40.0%
ATAACAGTATCGTGAATCGG+GGG - Chr4:1956643-1956662 MsG0480018231.01.T01:intron 40.0%
ATCAGCTGTTCGATAAGTAG+TGG + Chr4:1958152-1958171 None:intergenic 40.0%
ATCGAGATCCTAGACAAGAT+CGG - Chr4:1956614-1956633 MsG0480018231.01.T01:intron 40.0%
ATTCCTTCTCTGACTGAGAA+AGG + Chr4:1956237-1956256 None:intergenic 40.0%
ATTTGTTCCCTGGTGTGTTT+CGG - Chr4:1957432-1957451 MsG0480018231.01.T01:CDS 40.0%
CCTAGACACAACATTAAAGC+AGG + Chr4:1957683-1957702 None:intergenic 40.0%
CCTGCTTTAATGTTGTGTCT+AGG - Chr4:1957680-1957699 MsG0480018231.01.T01:intron 40.0%
CGTAAAAACGCAAGAGTCTA+CGG + Chr4:1957238-1957257 None:intergenic 40.0%
CTTTCGAGATGAGAGTTTGA+AGG - Chr4:1954829-1954848 MsG0480018231.01.T01:intron 40.0%
GAACCAACCTGAATAAAAGG+AGG + Chr4:1957960-1957979 None:intergenic 40.0%
GATAACAGTATCGTGAATCG+GGG - Chr4:1956642-1956661 MsG0480018231.01.T01:intron 40.0%
GATTGGGATTTGTGAGTGTT+TGG - Chr4:1955237-1955256 MsG0480018231.01.T01:intron 40.0%
GATTGTCTTCTTGAAATCCC+GGG + Chr4:1957110-1957129 None:intergenic 40.0%
GGAAAGTTGGAGCCAAATTT+GGG - Chr4:1954632-1954651 MsG0480018231.01.T01:intron 40.0%
GGATAACAGTATCGTGAATC+GGG - Chr4:1956641-1956660 MsG0480018231.01.T01:intron 40.0%
GGTATGTTGTGGTTGTGATT+GGG - Chr4:1955221-1955240 MsG0480018231.01.T01:intron 40.0%
GGTCATTGCTAAGGCATAAT+AGG - Chr4:1955993-1956012 MsG0480018231.01.T01:CDS 40.0%
GTGTCTTTGTCCAAATTCTC+CGG + Chr4:1954384-1954403 None:intergenic 40.0%
GTTATCTTGATGTGAGACAG+AGG - Chr4:1955948-1955967 MsG0480018231.01.T01:CDS 40.0%
GTTGACATTGACATTAGCTG+GGG - Chr4:1955200-1955219 MsG0480018231.01.T01:intron 40.0%
TATCAACTTGCCGGAGAATT+TGG - Chr4:1954371-1954390 MsG0480018231.01.T01:CDS 40.0%
TATCTCCTACCTCCCATTTA+TGG - Chr4:1956339-1956358 MsG0480018231.01.T01:CDS 40.0%
TCGTCATAACCGGTATGATT+CGG - Chr4:1954041-1954060 MsG0480018231.01.T01:CDS 40.0%
TGAACACGATCTTAGTGTCT+TGG - Chr4:1956146-1956165 MsG0480018231.01.T01:intron 40.0%
TGATAGTCTGTAGGTGTGTT+CGG - Chr4:1957377-1957396 MsG0480018231.01.T01:CDS 40.0%
TGCTTGATTGGGTATGGAAT+CGG + Chr4:1957197-1957216 None:intergenic 40.0%
TGGAAAGTTGGAGCCAAATT+TGG - Chr4:1954631-1954650 MsG0480018231.01.T01:intron 40.0%
TTCTTGAAATCCCGGGTTTA+CGG + Chr4:1957103-1957122 None:intergenic 40.0%
TTGAAACCTGACACTATAGG+TGG - Chr4:1957981-1958000 MsG0480018231.01.T01:CDS 40.0%
TTGGGTATGGAATCGGAAAT+TGG + Chr4:1957190-1957209 None:intergenic 40.0%
! GTTGTTATGCTTGGTGAGAA+TGG - Chr4:1957831-1957850 MsG0480018231.01.T01:CDS 40.0%
! TTCACCACCTCCTTTTATTC+AGG - Chr4:1957950-1957969 MsG0480018231.01.T01:intron 40.0%
!! AATGTTGGTGATCTTTCAGG+GGG - Chr4:1955851-1955870 MsG0480018231.01.T01:intron 40.0%
!! ACAAAGGTGCCGCATATATA+CGG + Chr4:1957499-1957518 None:intergenic 40.0%
!! CGTAATGTTGGTGATCTTTC+AGG - Chr4:1955848-1955867 MsG0480018231.01.T01:intron 40.0%
!! CTTGAGTTTTGGTCATGGTT+GGG + Chr4:1957761-1957780 None:intergenic 40.0%
!! CTTGGTTTGGTTGGGAAAAA+TGG - Chr4:1954575-1954594 MsG0480018231.01.T01:intron 40.0%
!!! TTCTGAAGTTTTTCGAAGCC+GGG - Chr4:1957064-1957083 MsG0480018231.01.T01:intron 40.0%
AAAATTTCCTGCCAGTCAGG+AGG + Chr4:1954767-1954786 None:intergenic 45.0%
AAACATGTCTGTCCACTCCA+CGG + Chr4:1954703-1954722 None:intergenic 45.0%
AAATTTCCTGCCAGTCAGGA+GGG + Chr4:1954766-1954785 None:intergenic 45.0%
AAGTTCAGGCTTCGTGTAGT+TGG - Chr4:1957783-1957802 MsG0480018231.01.T01:CDS 45.0%
AAGTTGTCCGGTCATTGCTA+AGG - Chr4:1955984-1956003 MsG0480018231.01.T01:CDS 45.0%
ACATCCAGTGCACAATTCCT+CGG + Chr4:1954206-1954225 None:intergenic 45.0%
ACATTAGCTGGGGTATGTTG+TGG - Chr4:1955210-1955229 MsG0480018231.01.T01:intron 45.0%
ACGCGTATTGCCATTGTCAA+TGG - Chr4:1953965-1953984 MsG0480018231.01.T01:CDS 45.0%
ATCAATCTCAGCGCCCAAAT+TGG + Chr4:1956374-1956393 None:intergenic 45.0%
ATCCGTTTCATTCATGTGCC+AGG - Chr4:1956913-1956932 MsG0480018231.01.T01:intron 45.0%
CAACAGCAATGGCAAACCTT+TGG + Chr4:1955883-1955902 None:intergenic 45.0%
CAAGAAGCAAACTAACTCGC+GGG + Chr4:1957534-1957553 None:intergenic 45.0%
CACATTCATAAAACGGGGCA+AGG - Chr4:1955737-1955756 MsG0480018231.01.T01:intron 45.0%
CACTATAGGTGGATCTGATG+TGG - Chr4:1957992-1958011 MsG0480018231.01.T01:CDS 45.0%
CCAAAACTCAAGGCAAGTTC+AGG - Chr4:1957769-1957788 MsG0480018231.01.T01:intron 45.0%
CCAACCATGACCAAAACTCA+AGG - Chr4:1957759-1957778 MsG0480018231.01.T01:intron 45.0%
CCAACCTGAATAAAAGGAGG+TGG + Chr4:1957957-1957976 None:intergenic 45.0%
CTTCCTTTCTCAGTCAGAGA+AGG - Chr4:1956231-1956250 MsG0480018231.01.T01:CDS 45.0%
GAACAAACCGAAACACACCA+GGG + Chr4:1957442-1957461 None:intergenic 45.0%
GAAGATTGCTTACCTATCCG+AGG - Chr4:1954186-1954205 MsG0480018231.01.T01:CDS 45.0%
GACAACATTCATCCGTATGC+TGG - Chr4:1957863-1957882 MsG0480018231.01.T01:intron 45.0%
GACCTGGCACATGAATGAAA+CGG + Chr4:1956918-1956937 None:intergenic 45.0%
GCAAGAAGCAAACTAACTCG+CGG + Chr4:1957535-1957554 None:intergenic 45.0%
GCATCTGTCTCCATTGACAA+TGG + Chr4:1953978-1953997 None:intergenic 45.0%
GGATGACTCTCTTACCTTCA+AGG - Chr4:1956305-1956324 MsG0480018231.01.T01:CDS 45.0%
GGGTATGTTGTGGTTGTGAT+TGG - Chr4:1955220-1955239 MsG0480018231.01.T01:intron 45.0%
GTCAAAATTTCCTGCCAGTC+AGG + Chr4:1954770-1954789 None:intergenic 45.0%
GTCGGTGTACCGTATATATG+CGG - Chr4:1957487-1957506 MsG0480018231.01.T01:intron 45.0%
GTTCTGCAAACCAAAAGCAG+AGG + Chr4:1954744-1954763 None:intergenic 45.0%
TAGCAATGACCGGACAACTT+GGG + Chr4:1955984-1956003 None:intergenic 45.0%
TATGGAACACCTGGTGCATA+TGG - Chr4:1956198-1956217 MsG0480018231.01.T01:CDS 45.0%
TCAGATCCACCTATAGTGTC+AGG + Chr4:1957990-1958009 None:intergenic 45.0%
TCGAGATCCTAGACAAGATC+GGG - Chr4:1956615-1956634 MsG0480018231.01.T01:intron 45.0%
TCTTGAAATCCCGGGTTTAC+GGG + Chr4:1957102-1957121 None:intergenic 45.0%
TGAGCTTCAGCAGTTTCATG+TGG + Chr4:1957717-1957736 None:intergenic 45.0%
TGTCTAGTGGTGTATTGGGA+AGG - Chr4:1956822-1956841 MsG0480018231.01.T01:intron 45.0%
TTAGCAATGACCGGACAACT+TGG + Chr4:1955985-1956004 None:intergenic 45.0%
! ACCTTTTCCATGGGTTTTCG+CGG - Chr4:1957146-1957165 MsG0480018231.01.T01:intron 45.0%
! ACTGCATTCACCTCTGCTTT+TGG - Chr4:1954731-1954750 MsG0480018231.01.T01:intron 45.0%
! AGCCAAAATTCTAAGGGCAG+TGG + Chr4:1954612-1954631 None:intergenic 45.0%
! ATCATACCGGTTATGACGAC+AGG + Chr4:1954040-1954059 None:intergenic 45.0%
! CAAGCCAAAAAAGTGTGGAC+AGG - Chr4:1953997-1954016 MsG0480018231.01.T01:CDS 45.0%
! CACGATTCCACCTTTTCCAT+GGG - Chr4:1957137-1957156 MsG0480018231.01.T01:intron 45.0%
! CCACCTCCTTTTATTCAGGT+TGG - Chr4:1957954-1957973 MsG0480018231.01.T01:intron 45.0%
! CCTGAACTTGCCTTGAGTTT+TGG + Chr4:1957772-1957791 None:intergenic 45.0%
! GTCCACTGCCCTTAGAATTT+TGG - Chr4:1954607-1954626 MsG0480018231.01.T01:intron 45.0%
! GTGTGTGCTTGATAGTCTGT+AGG - Chr4:1957368-1957387 MsG0480018231.01.T01:CDS 45.0%
! TATGCTTGGTGAGAATGGGA+CGG - Chr4:1957836-1957855 MsG0480018231.01.T01:CDS 45.0%
! TCATACCGGTTATGACGACA+GGG + Chr4:1954039-1954058 None:intergenic 45.0%
! TGCTGTTTGTATGGAACACC+TGG - Chr4:1956189-1956208 MsG0480018231.01.T01:intron 45.0%
!! ACTGCCCTTAGAATTTTGGC+TGG - Chr4:1954611-1954630 MsG0480018231.01.T01:intron 45.0%
!! CCTTGAGTTTTGGTCATGGT+TGG + Chr4:1957762-1957781 None:intergenic 45.0%
!! CTTGCCTTGAGTTTTGGTCA+TGG + Chr4:1957766-1957785 None:intergenic 45.0%
!! GGAAAGTGCTTGGTTTGGTT+GGG - Chr4:1954567-1954586 MsG0480018231.01.T01:intron 45.0%
!!! CACTCCTGTCCACACTTTTT+TGG + Chr4:1954004-1954023 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAGATAT+TGG - Chr4:1957590-1957609 MsG0480018231.01.T01:CDS 5.0%
!!! ATTAATAAATATTTGTTAAT+TGG - Chr4:1956873-1956892 MsG0480018231.01.T01:intron 5.0%
!!! TAATTTTTTTTTTTACAAAT+TGG - Chr4:1954962-1954981 MsG0480018231.01.T01:intron 5.0%
ACCAAACCAAGCACTTTCCC+CGG + Chr4:1954566-1954585 None:intergenic 50.0%
CAGTGCACAATTCCTCGGAT+AGG + Chr4:1954201-1954220 None:intergenic 50.0%
CGAGATCCTAGACAAGATCG+GGG - Chr4:1956616-1956635 MsG0480018231.01.T01:intron 50.0%
CTATCCGAGGAATTGTGCAC+TGG - Chr4:1954199-1954218 MsG0480018231.01.T01:CDS 50.0%
GAATCGGAAATTGGTGAGCC+CGG + Chr4:1957181-1957200 None:intergenic 50.0%
GAGGAATTGTGCACTGGATG+TGG - Chr4:1954205-1954224 MsG0480018231.01.T01:CDS 50.0%
GCGAAAACCCATGGAAAAGG+TGG + Chr4:1957147-1957166 None:intergenic 50.0%
GGAACAAACCGAAACACACC+AGG + Chr4:1957443-1957462 None:intergenic 50.0%
GGAGTGGACAGACATGTTTG+AGG - Chr4:1954704-1954723 MsG0480018231.01.T01:intron 50.0%
GTTACGACTCCATATGCACC+AGG + Chr4:1956210-1956229 None:intergenic 50.0%
TACCCAATCAAGCACGCAGA+TGG - Chr4:1957203-1957222 MsG0480018231.01.T01:intron 50.0%
TAGTCTGTAGGTGTGTTCGG+TGG - Chr4:1957380-1957399 MsG0480018231.01.T01:CDS 50.0%
TCTGCGTGCTTGATTGGGTA+TGG + Chr4:1957203-1957222 None:intergenic 50.0%
TGAAAGCTGCCCAAGTTGTC+CGG - Chr4:1955972-1955991 MsG0480018231.01.T01:CDS 50.0%
TGAATCGGGGGATCGTAACA+CGG - Chr4:1956655-1956674 MsG0480018231.01.T01:intron 50.0%
TGCCATCTGCGTGCTTGATT+GGG + Chr4:1957208-1957227 None:intergenic 50.0%
TTCAGGCTTCGTGTAGTTGG+AGG - Chr4:1957786-1957805 MsG0480018231.01.T01:CDS 50.0%
! ATGCTTGGTGAGAATGGGAC+GGG - Chr4:1957837-1957856 MsG0480018231.01.T01:CDS 50.0%
! GCACGATTCCACCTTTTCCA+TGG - Chr4:1957136-1957155 MsG0480018231.01.T01:intron 50.0%
! GCAGGCATAGATTTGTTCCC+TGG - Chr4:1957422-1957441 MsG0480018231.01.T01:CDS 50.0%
!! AGTTTTTCGAAGCCGGGTCA+CGG - Chr4:1957070-1957089 MsG0480018231.01.T01:intron 50.0%
!! ATTATAGGTTGCCGGTTCCG+AGG - Chr4:1954540-1954559 MsG0480018231.01.T01:intron 50.0%
!! GGGAAAGTGCTTGGTTTGGT+TGG - Chr4:1954566-1954585 MsG0480018231.01.T01:intron 50.0%
AAAACGGGGCAAGGGAACGT+GGG - Chr4:1955746-1955765 MsG0480018231.01.T01:intron 55.0%
ATCCTAGACAAGATCGGGGC+AGG - Chr4:1956620-1956639 MsG0480018231.01.T01:intron 55.0%
ATCCTGCCCCGATCTTGTCT+AGG + Chr4:1956625-1956644 None:intergenic 55.0%
CGTTGCCCTGTCGTCATAAC+CGG - Chr4:1954031-1954050 MsG0480018231.01.T01:CDS 55.0%
GAAATCCCGGGTTTACGGGT+CGG + Chr4:1957098-1957117 None:intergenic 55.0%
GCCGCGAAAACCCATGGAAA+AGG + Chr4:1957150-1957169 None:intergenic 55.0%
GTGCCATCTGCGTGCTTGAT+TGG + Chr4:1957209-1957228 None:intergenic 55.0%
GTTTGCAGAACCCTCCTGAC+TGG - Chr4:1954753-1954772 MsG0480018231.01.T01:intron 55.0%
TAAAACGGGGCAAGGGAACG+TGG - Chr4:1955745-1955764 MsG0480018231.01.T01:intron 55.0%
TAGGAGGGCAGCAACAGCAA+TGG + Chr4:1955894-1955913 None:intergenic 55.0%
TTTCAGGGGGTGAGCTCCAA+AGG - Chr4:1955864-1955883 MsG0480018231.01.T01:intron 55.0%
! ATGGGTTTTCGCGGCGATTC+CGG - Chr4:1957155-1957174 MsG0480018231.01.T01:intron 55.0%
! TGTAGGTGTGTTCGGTGGTG+TGG - Chr4:1957385-1957404 MsG0480018231.01.T01:CDS 55.0%
!! ACAGGTGCGCCTTTTAGCTG+TGG - Chr4:1954439-1954458 MsG0480018231.01.T01:CDS 55.0%
!! GGGCGCTGAGATTGATTGAG+TGG - Chr4:1956378-1956397 MsG0480018231.01.T01:CDS 55.0%
AAACGGGGCAAGGGAACGTG+GGG - Chr4:1955747-1955766 MsG0480018231.01.T01:intron 60.0%
ACGGATCCGACCCGTAAACC+CGG - Chr4:1957089-1957108 MsG0480018231.01.T01:intron 60.0%
CGGGGGATCGTAACACGGAT+CGG - Chr4:1956660-1956679 MsG0480018231.01.T01:intron 60.0%
GGAATCGCCGCGAAAACCCA+TGG + Chr4:1957156-1957175 None:intergenic 60.0%
! GTGGCTTGTCTTCGCTGTGC+AGG - Chr4:1957404-1957423 MsG0480018231.01.T01:CDS 60.0%
!! GCCGGGGAAAGTGCTTGGTT+TGG - Chr4:1954562-1954581 MsG0480018231.01.T01:intron 60.0%
ACTTTCCCCGGCCTCGGAAC+CGG + Chr4:1954554-1954573 None:intergenic 65.0%
CCAAGCACTTTCCCCGGCCT+CGG + Chr4:1954560-1954579 None:intergenic 65.0%
CGGAAATTGGTGAGCCCGGC+CGG + Chr4:1957177-1957196 None:intergenic 65.0%
CGGATCCGACCCGTAAACCC+GGG - Chr4:1957090-1957109 MsG0480018231.01.T01:intron 65.0%
GCAGAACCCTCCTGACTGGC+AGG - Chr4:1954757-1954776 MsG0480018231.01.T01:intron 65.0%
TACGGGTCGGATCCGTGACC+CGG + Chr4:1957085-1957104 None:intergenic 65.0%
! GTTTTCGCGGCGATTCCGGC+CGG - Chr4:1957159-1957178 MsG0480018231.01.T01:intron 65.0%
! TTTTCGCGGCGATTCCGGCC+GGG - Chr4:1957160-1957179 MsG0480018231.01.T01:intron 65.0%
!! TAGGTTGCCGGTTCCGAGGC+CGG - Chr4:1954544-1954563 MsG0480018231.01.T01:intron 65.0%
!! AGGTTGCCGGTTCCGAGGCC+GGG - Chr4:1954545-1954564 MsG0480018231.01.T01:intron 70.0%
!! CCGAGGCCGGGGAAAGTGCT+TGG - Chr4:1954557-1954576 MsG0480018231.01.T01:intron 70.0%
!! GGTTGCCGGTTCCGAGGCCG+GGG - Chr4:1954546-1954565 MsG0480018231.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 1953962 1958250 1953962 ID=MsG0480018231.01;Name=MsG0480018231.01
Chr4 mRNA 1953962 1958250 1953962 ID=MsG0480018231.01.T01;Parent=MsG0480018231.01;Name=MsG0480018231.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0.87|0.66|1|1|1|9|0|481
Chr4 exon 1958160 1958250 1958160 ID=MsG0480018231.01.T01:exon:622;Parent=MsG0480018231.01.T01
Chr4 exon 1957972 1958057 1957972 ID=MsG0480018231.01.T01:exon:621;Parent=MsG0480018231.01.T01
Chr4 exon 1957770 1957867 1957770 ID=MsG0480018231.01.T01:exon:620;Parent=MsG0480018231.01.T01
Chr4 exon 1957548 1957665 1957548 ID=MsG0480018231.01.T01:exon:619;Parent=MsG0480018231.01.T01
Chr4 exon 1957362 1957451 1957362 ID=MsG0480018231.01.T01:exon:618;Parent=MsG0480018231.01.T01
Chr4 exon 1956198 1956502 1956198 ID=MsG0480018231.01.T01:exon:617;Parent=MsG0480018231.01.T01
Chr4 exon 1955886 1956081 1955886 ID=MsG0480018231.01.T01:exon:616;Parent=MsG0480018231.01.T01
Chr4 exon 1954328 1954510 1954328 ID=MsG0480018231.01.T01:exon:615;Parent=MsG0480018231.01.T01
Chr4 exon 1953962 1954240 1953962 ID=MsG0480018231.01.T01:exon:614;Parent=MsG0480018231.01.T01
Chr4 CDS 1958160 1958250 1958160 ID=MsG0480018231.01.T01:cds;Parent=MsG0480018231.01.T01
Chr4 CDS 1957972 1958057 1957972 ID=MsG0480018231.01.T01:cds;Parent=MsG0480018231.01.T01
Chr4 CDS 1957770 1957867 1957770 ID=MsG0480018231.01.T01:cds;Parent=MsG0480018231.01.T01
Chr4 CDS 1957548 1957665 1957548 ID=MsG0480018231.01.T01:cds;Parent=MsG0480018231.01.T01
Chr4 CDS 1957362 1957451 1957362 ID=MsG0480018231.01.T01:cds;Parent=MsG0480018231.01.T01
Chr4 CDS 1956198 1956502 1956198 ID=MsG0480018231.01.T01:cds;Parent=MsG0480018231.01.T01
Chr4 CDS 1955886 1956081 1955886 ID=MsG0480018231.01.T01:cds;Parent=MsG0480018231.01.T01
Chr4 CDS 1954328 1954510 1954328 ID=MsG0480018231.01.T01:cds;Parent=MsG0480018231.01.T01
Chr4 CDS 1953962 1954240 1953962 ID=MsG0480018231.01.T01:cds;Parent=MsG0480018231.01.T01
Gene Sequence

>MsG0480018231.01.T01

ATGACGCGTATTGCCATTGTCAATGGAGACAGATGCAAGCCAAAAAAGTGTGGACAGGAGTGTAAGAAGCGTTGCCCTGTCGTCATAACCGGAAGATTGTGTATTGAGGTTGATTCTGCATCGAAGATTGCTTACCTATCCGAGGAATTGTGCACTGGATGTGGTATTTGTGTTAAGAAATGTCCTTTTGAAGCAATTAAGATTATCAACTTGCCGGAGAATTTGGACAAAGACACCACTCATAGATATGGTCCTAATACTTTTAAGCTACACAGGTTGCCGGTTCCGAGGCCGGGGAAAGTGCTTGGTTTGGTTGGGAAAAATGGAATTGGGAAGTCCACTGCCCTTAGAATTTTGGCTGGAAAGTTGGAGCCAAATTTGGGTCGTTTCACTAACCCTCCTGACTGGCAGGAAATTTTGACTTATTATCGGGGATCTGAATTACAGAATTACTTTACTCGCTTTCGAGATGAGAGTTTGAAGGTTAGCTTCAAGGCTCAATATATTGATCACATTCATAAAACGGGGCAAGGGAACGTGGGGCAGATGCTAGACCAAAACAATGAGAGAGATATGAAGGAAGAGCTCTGTGCTGATCTTGAGCTTAATCAAGTTATAGATCGTAATGTTGGTGATCTTTCAGGGGGTGAGCTCCAAAGGTTTGCCATTGCTGTTGCTGCCCTCCTAAAAGCTGAGATATACATGTTTGATGAACCTTCTAGTTATCTTGATGTGAGACAGAGGCTGAAAGCTGCCCAAGTTGTCCGGTCATTGCTAAGGCATAATAGCTATGTAATTGTTGTTGAACACGATCTTAGTGTCTTGGACTACTTATCAGACTTTATTTGCTGTTTGTATGGAACACCTGGTGCATATGGAGTCGTAACACTTCCTTTCTCAGTCAGAGAAGGAATTAATATCTTCTTGTCTGGCTTTGTTCCAACAGAAAATCTTAGGTTTCGGGATGACTCTCTTACCTTCAAGGTTGCAGAGACTCCACATGAAACTGCTGAAGCTCAAACATATGCTCGATACAAGTACCCAACCATGACCAAAACTCAAGGCAAGTTCAGGCTTCGTGTAGTTGGAGGAGAATTTACGGATTCTCAGATTGTTGTTATGCTTGGTGAGAATGGGACGGGAAAGACAACATTCATCCGTATGCTGGTTGGTTCATTGAAACCTGACACTATAGGTGGATCTGATGTGGAAATGCCTGAGTTCAATATTTCACACAAACCTCAGACAATTAACCCAAAGTTCAAATCAACTGTTAGACACCTGTTACATGAAAGAATTCATCAATCTTATACTCATCCCCAGTTTATATCAGATGTGATGAAACCACTACTTATCGAACAGCTGATGGACAAAGAAGTTTTGAATCTTTCTGGTGGAGAGTTGCAAATAGTTTCCTTATGTCTTTGTCTTGGAAAGGTATTTTAA
Protein sequence

>MsG0480018231.01.T01

MTRIAIVNGDRCKPKKCGQECKKRCPVVITGRLCIEVDSASKIAYLSEELCTGCGICVKKCPFEAIKIINLPENLDKDTTHRYGPNTFKLHRLPVPRPGKVLGLVGKNGIGKSTALRILAGKLEPNLGRFTNPPDWQEILTYYRGSELQNYFTRFRDESLKVSFKAQYIDHIHKTGQGNVGQMLDQNNERDMKEELCADLELNQVIDRNVGDLSGGELQRFAIAVAALLKAEIYMFDEPSSYLDVRQRLKAAQVVRSLLRHNSYVIVVEHDLSVLDYLSDFICCLYGTPGAYGVVTLPFSVREGINIFLSGFVPTENLRFRDDSLTFKVAETPHETAEAQTYARYKYPTMTKTQGKFRLRVVGGEFTDSQIVVMLGENGTGKTTFIRMLVGSLKPDTIGGSDVEMPEFNISHKPQTINPKFKSTVRHLLHERIHQSYTHPQFISDVMKPLLIEQLMDKEVLNLSGGELQIVSLCLCLGKVF*