AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009372.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009372.01.T01 MTR_1g103100 97.701 261 6 0 1 261 1 261 0.0 530
MsG0280009372.01.T01 MTR_3g012040 95.785 261 11 0 1 261 1 261 0.0 497
MsG0280009372.01.T01 MTR_5g006440 94.636 261 14 0 1 261 1 261 1.01e-178 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009372.01.T01 AT3G04840 85.115 262 38 1 1 261 1 262 1.75e-163 453
MsG0280009372.01.T01 AT4G34670 85.496 262 37 1 1 261 1 262 4.54e-163 452

Find 86 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAACTTGGGAGCTTTA+AGG 0.168578 2:-51025061 None:intergenic
AATATCATACCAATCCTTCT+TGG 0.295389 2:-51023065 None:intergenic
ATTTGGTCCTTGTAGGTTCA+TGG 0.297913 2:+51025489 MsG0280009372.01.T01:intron
GAAGGATTGGTATGATATTA+AGG 0.312711 2:+51023069 MsG0280009372.01.T01:CDS
CTGACTAGATTGTGCATAAC+AGG 0.339955 2:-51024645 None:intergenic
AAAGCTCCCAAGTTTGATCT+TGG 0.357514 2:+51025065 MsG0280009372.01.T01:CDS
TAAGAACAAGCGGATCTCTA+AGG 0.365175 2:+51022912 MsG0280009372.01.T01:CDS
GTTTGATCTTGGAAAATTGA+TGG 0.369245 2:+51025076 MsG0280009372.01.T01:CDS
AAATCAGATATGCATGCTAT+TGG 0.369317 2:+51025707 MsG0280009372.01.T01:three_prime_UTR
GAAATTGTTGGAGCTTGATT+TGG 0.369823 2:+51025582 MsG0280009372.01.T01:exon
CCCTAAAACGGTGCCATTGT+TGG 0.380678 2:+51022826 None:intergenic
AAATTCATTCCCGAGATGAT+TGG 0.381702 2:+51024969 MsG0280009372.01.T01:CDS
GGGACGAAGACCATGCATTC+AGG 0.393353 2:+51024320 MsG0280009372.01.T01:CDS
ATCCTGTGATTTGAAGGAAT+TGG 0.402781 2:+51024941 MsG0280009372.01.T01:CDS
GACCCTCGTGTCTCGTACTC+AGG 0.406163 2:+51023126 MsG0280009372.01.T01:CDS
TACCAATCCTTCTTGGCAAA+TGG 0.412105 2:-51023058 None:intergenic
TAGAGTGTTTGAGGTTTCAT+TGG 0.413434 2:+51024285 MsG0280009372.01.T01:CDS
GTTTCATTGGCTGATCTTCA+AGG 0.434675 2:+51024298 MsG0280009372.01.T01:CDS
TGCTGATCCATTTGCCAAGA+AGG 0.436339 2:+51023051 MsG0280009372.01.T01:CDS
AATTCATTCCCGAGATGATT+GGG 0.437177 2:+51024970 MsG0280009372.01.T01:CDS
AGCATCATCCTGTGATTTGA+AGG 0.439297 2:+51024935 MsG0280009372.01.T01:CDS
TACCAAGAGGAGAGCTAACC+AGG 0.440122 2:+51024613 MsG0280009372.01.T01:CDS
TCCGTCACCATTTCATCAGC+AGG 0.444686 2:-51025549 None:intergenic
ACTCAAGCATAGAGTGTTTG+AGG 0.454600 2:+51024276 MsG0280009372.01.T01:CDS
ACCATGCATTCAGGAAGATT+AGG 0.462005 2:+51024329 MsG0280009372.01.T01:CDS
ATCCATTTGCCAAGAAGGAT+TGG 0.465718 2:+51023056 MsG0280009372.01.T01:CDS
ATCTCCTTCCCAATCATCTC+GGG 0.483111 2:-51024978 None:intergenic
GAGGAACCTACTGAAATTGT+TGG 0.484047 2:+51025570 MsG0280009372.01.T01:CDS
TGTTCAGATCCGTAGGAAGA+TGG 0.490433 2:+51024893 MsG0280009372.01.T01:intron
CACCTGGTTAGCTCTCCTCT+TGG 0.502596 2:-51024615 None:intergenic
AACTGACAAACTGAGGTCAT+TGG 0.506332 2:+51024505 MsG0280009372.01.T01:CDS
TGAGGTCATTGGTGCGTAAG+TGG 0.507827 2:+51024516 MsG0280009372.01.T01:CDS
CGGATCTCTAAGGGGAAGAA+AGG 0.516719 2:+51022922 MsG0280009372.01.T01:CDS
AGAGTTCTCACAGCAACAAT+GGG 0.521052 2:-51022859 None:intergenic
AAGAACAAGCGGATCTCTAA+GGG 0.521243 2:+51022913 MsG0280009372.01.T01:CDS
CTTGTTCTTACCAACGGCCA+TGG 0.523346 2:-51022899 None:intergenic
ACCTAATCTTCCTGAATGCA+TGG 0.523822 2:-51024330 None:intergenic
TTTCATTGGCTGATCTTCAA+GGG 0.523908 2:+51024299 MsG0280009372.01.T01:CDS
TCATCTCGGGAATGAATTTG+CGG 0.528925 2:-51024965 None:intergenic
AGAGAGGCCTGCTGATGAAA+TGG 0.532099 2:+51025542 MsG0280009372.01.T01:CDS
TCTTGCCGACATTCTTCACC+TGG 0.534041 2:-51023105 None:intergenic
AATCTCCTTCCCAATCATCT+CGG 0.535678 2:-51024979 None:intergenic
TTGAGAGCTGAAGATGTTCA+AGG 0.537527 2:+51024352 MsG0280009372.01.T01:CDS
CGGATGAACACATTCTGCAA+GGG 0.539130 2:-51025026 None:intergenic
TCAAATCACAGGATGATGCT+TGG 0.544201 2:-51024932 None:intergenic
CATAACAGGTCCTCTTCACC+TGG 0.545447 2:-51024631 None:intergenic
GGAGAGCTAACCAGGTGAAG+AGG 0.557404 2:+51024621 MsG0280009372.01.T01:CDS
GAATGACAGATTGCTTCAGA+TGG 0.560187 2:+51024253 MsG0280009372.01.T01:intron
CAGAGTTCTCACAGCAACAA+TGG 0.562486 2:-51022860 None:intergenic
CTCTGAGGATGTTGGCACAA+AGG 0.562498 2:+51025518 MsG0280009372.01.T01:CDS
CTTTATTTGTTCAGATCCGT+AGG 0.563835 2:+51024886 MsG0280009372.01.T01:intron
GATCCGCTTGTTCTTACCAA+CGG 0.569816 2:-51022905 None:intergenic
GACCAATTCCTTCAAATCAC+AGG 0.574407 2:-51024943 None:intergenic
CGGCCATGGTTTGCAGAGTG+CGG 0.574995 2:-51022885 None:intergenic
TCGGATGAACACATTCTGCA+AGG 0.575354 2:-51025027 None:intergenic
ACAATCTAGTCAGATTAGAC+AGG 0.580594 2:+51024655 MsG0280009372.01.T01:CDS
CAAGCTCCAACAATTTCAGT+AGG 0.582102 2:-51025576 None:intergenic
GGAGATTACTCTGAGGATGT+TGG 0.587473 2:+51025510 MsG0280009372.01.T01:CDS
TTCTTCACCTGGAAAACTGA+AGG 0.588083 2:-51023094 None:intergenic
GAGCCGCACTCTGCAAACCA+TGG 0.588659 2:+51022882 MsG0280009372.01.T01:exon
TGATCTCAACCATCTTCCTA+CGG 0.590794 2:-51024902 None:intergenic
TTCATTGGCTGATCTTCAAG+GGG 0.595752 2:+51024300 MsG0280009372.01.T01:CDS
CAGTAGTCTTGACATCCACA+TGG 0.596992 2:-51024556 None:intergenic
ACTCTGCAAACCATGGCCGT+TGG 0.603780 2:+51022889 MsG0280009372.01.T01:exon
CATTCCCGAGATGATTGGGA+AGG 0.605231 2:+51024974 MsG0280009372.01.T01:CDS
TGATCTTGGAAAATTGATGG+AGG 0.612140 2:+51025079 MsG0280009372.01.T01:CDS
TGAGAGCTGAAGATGTTCAA+GGG 0.612312 2:+51024353 MsG0280009372.01.T01:CDS
ACCCTCGTGTCTCGTACTCA+GGG 0.615233 2:+51023127 MsG0280009372.01.T01:CDS
ATCTCTAAGGGGAAGAAAGG+TGG 0.621403 2:+51022925 MsG0280009372.01.T01:CDS
AACTCTTGTTGAAGCCCATG+TGG 0.622205 2:+51024541 MsG0280009372.01.T01:CDS
GTCTCGTACTCAGGGTACCA+AGG 0.623684 2:+51023135 MsG0280009372.01.T01:CDS
TGGCCGTTGGTAAGAACAAG+CGG 0.624911 2:+51022902 MsG0280009372.01.T01:CDS
GCCTGCTGATGAAATGGTGA+CGG 0.629382 2:+51025548 MsG0280009372.01.T01:CDS
GGATGAACACATTCTGCAAG+GGG 0.631103 2:-51025025 None:intergenic
CAAGGGGTAAATACTAGACG+TGG 0.633754 2:-51025009 None:intergenic
CTACTGATAATTACACATTG+AGG 0.636083 2:+51024573 MsG0280009372.01.T01:CDS
GGGAAAGAAACTTCCAACAA+TGG 0.637787 2:-51022839 None:intergenic
TTTGCATTGGCTTTACCAAG+AGG 0.642280 2:+51024600 MsG0280009372.01.T01:CDS
TACCCTGAGTACGAGACACG+AGG 0.648373 2:-51023129 None:intergenic
ATGTTGGCACAAAGGTAGAG+AGG 0.654238 2:+51025526 MsG0280009372.01.T01:CDS
ATTTCACAACTGACAAACTG+AGG 0.681977 2:+51024498 MsG0280009372.01.T01:CDS
TGCTGATGAAATGGTGACGG+AGG 0.686062 2:+51025551 MsG0280009372.01.T01:CDS
ACCCTGAGTACGAGACACGA+GGG 0.700568 2:-51023128 None:intergenic
AGTAGTCTTGACATCCACAT+GGG 0.706350 2:-51024555 None:intergenic
AGAACAAGCGGATCTCTAAG+GGG 0.721950 2:+51022914 MsG0280009372.01.T01:CDS
GGTTCATGGAGATTACTCTG+AGG 0.741731 2:+51025503 MsG0280009372.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTATGAAAATAAATAT+TGG - Chr2:51025148-51025167 None:intergenic 10.0%
!!! GATTTTTTTTTTTTATTTAC+AGG + Chr2:51024469-51024488 MsG0280009372.01.T01:intron 10.0%
!!! TTAGTATAAAAATTGTTTTA+TGG - Chr2:51023719-51023738 None:intergenic 10.0%
!!! TTTTTTTTTTTTATTTACAG+GGG + Chr2:51024471-51024490 MsG0280009372.01.T01:intron 10.0%
!! GTAAAAAATGAAAATTTGAA+TGG - Chr2:51022988-51023007 None:intergenic 15.0%
!!! ATATATTTCTGAATTTTGTT+TGG + Chr2:51025676-51025695 MsG0280009372.01.T01:three_prime_UTR 15.0%
!!! GTTTTTTGTTTTTTGTAATT+TGG + Chr2:51023177-51023196 MsG0280009372.01.T01:intron 15.0%
!! AAAAAAATGTTGTCAAATAG+CGG - Chr2:51023682-51023701 None:intergenic 20.0%
!! ATATATAAAGAAGAAATCAC+TGG + Chr2:51024798-51024817 MsG0280009372.01.T01:intron 20.0%
!! ATATTCAATGAAAGTAAGAT+AGG - Chr2:51023246-51023265 None:intergenic 20.0%
!! CTTAATGCTTATTTAGAAAA+TGG + Chr2:51024223-51024242 MsG0280009372.01.T01:intron 20.0%
!! GATACACTAATATATAAATC+TGG - Chr2:51024722-51024741 None:intergenic 20.0%
!!! AAAATCTTTTGACAAATTTC+TGG + Chr2:51024377-51024396 MsG0280009372.01.T01:CDS 20.0%
!!! AAATCTTTTGACAAATTTCT+GGG + Chr2:51024378-51024397 MsG0280009372.01.T01:CDS 20.0%
!!! ATTTGAATGGATTTTGAAAA+AGG - Chr2:51022975-51022994 None:intergenic 20.0%
!!! TCTTGTCTTTTAAATAATGT+TGG - Chr2:51023921-51023940 None:intergenic 20.0%
!!! TTTGAATGGATTTTGAAAAA+GGG - Chr2:51022974-51022993 None:intergenic 20.0%
! AAAAAATGTTGTCAAATAGC+GGG - Chr2:51023681-51023700 None:intergenic 25.0%
! AAAAACAAAAAACATGACAG+AGG - Chr2:51023170-51023189 None:intergenic 25.0%
! AAACATAAGTAACTAAGTGA+CGG - Chr2:51023493-51023512 None:intergenic 25.0%
! AAACCATTATAGAAAATGCA+AGG - Chr2:51023017-51023036 None:intergenic 25.0%
! AACAGCATTTCATAAAAGAA+AGG - Chr2:51024778-51024797 None:intergenic 25.0%
! AATAATCTGAAGGTTGTTTA+TGG - Chr2:51025287-51025306 None:intergenic 25.0%
! ACAACATTATGACAAATAGA+TGG - Chr2:51024421-51024440 None:intergenic 25.0%
! ACTTATAACCATCTAAAAAG+TGG + Chr2:51025445-51025464 MsG0280009372.01.T01:intron 25.0%
! ACTTTCATTGAATATCTATC+TGG + Chr2:51023251-51023270 MsG0280009372.01.T01:intron 25.0%
! ATATATTAGTGTATCCAACA+CGG + Chr2:51024727-51024746 MsG0280009372.01.T01:intron 25.0%
! ATTAAGCTATCTAAACAATC+AGG - Chr2:51023283-51023302 None:intergenic 25.0%
! GAGAATAAAAATGAAGACAT+GGG - Chr2:51024024-51024043 None:intergenic 25.0%
! GTTACTTATGTTTGTAGATA+CGG + Chr2:51023500-51023519 MsG0280009372.01.T01:intron 25.0%
! TATCACCTGAATAAAAACTT+TGG + Chr2:51025164-51025183 MsG0280009372.01.T01:intron 25.0%
! TTAAGCTATCTAAACAATCA+GGG - Chr2:51023282-51023301 None:intergenic 25.0%
! TTATTTCCATAATAGCCTAT+AGG - Chr2:51023415-51023434 None:intergenic 25.0%
! TTGAACTTGTAATAATCTGA+AGG - Chr2:51025297-51025316 None:intergenic 25.0%
!! AAAAACTTTGGTTGTTACTT+TGG + Chr2:51025176-51025195 MsG0280009372.01.T01:intron 25.0%
!! AAATATGTCTTAGTCTTTCA+TGG + Chr2:51024165-51024184 MsG0280009372.01.T01:intron 25.0%
!! AACAACCAAAGTTTTTATTC+AGG - Chr2:51025172-51025191 None:intergenic 25.0%
!! AAGCTAAAAGTTTTTCCTAT+AGG + Chr2:51023397-51023416 MsG0280009372.01.T01:intron 25.0%
!! AATATGTCTTAGTCTTTCAT+GGG + Chr2:51024166-51024185 MsG0280009372.01.T01:intron 25.0%
!! AATTTTCCAAGATCAAACTT+GGG - Chr2:51025074-51025093 None:intergenic 25.0%
!! TTATACTAAAAAGCATATCG+TGG + Chr2:51023730-51023749 MsG0280009372.01.T01:intron 25.0%
!! TTTCCTTGCATTTTCTATAA+TGG + Chr2:51023011-51023030 MsG0280009372.01.T01:intron 25.0%
!! TTTGGAAAGTTTGAAGTAAT+TGG - Chr2:51025245-51025264 None:intergenic 25.0%
!! TTTGTCATAATGTTGTTTGT+TGG + Chr2:51024425-51024444 MsG0280009372.01.T01:intron 25.0%
!!! GGTTTGATTTTGTTTCTATT+TGG + Chr2:51025472-51025491 MsG0280009372.01.T01:intron 25.0%
!!! TGATTGTTGTTTTATAAGTG+TGG - Chr2:51023849-51023868 None:intergenic 25.0%
AAATCAGATATGCATGCTAT+TGG + Chr2:51025707-51025726 MsG0280009372.01.T01:three_prime_UTR 30.0%
AATATCATACCAATCCTTCT+TGG - Chr2:51023068-51023087 None:intergenic 30.0%
CGAGAATAAAAATGAAGACA+TGG - Chr2:51024025-51024044 None:intergenic 30.0%
CTACTGATAATTACACATTG+AGG + Chr2:51024573-51024592 MsG0280009372.01.T01:CDS 30.0%
GTTGCTGAAATTTGATCAAT+TGG + Chr2:51024189-51024208 MsG0280009372.01.T01:intron 30.0%
GTTTGATCTTGGAAAATTGA+TGG + Chr2:51025076-51025095 MsG0280009372.01.T01:CDS 30.0%
TAAGCTGAAAAAACATCTCA+TGG + Chr2:51023432-51023451 MsG0280009372.01.T01:intron 30.0%
! ATATGTCTTAGTCTTTCATG+GGG + Chr2:51024167-51024186 MsG0280009372.01.T01:intron 30.0%
! CAATTTTCCAAGATCAAACT+TGG - Chr2:51025075-51025094 None:intergenic 30.0%
! GAAGGATTGGTATGATATTA+AGG + Chr2:51023069-51023088 MsG0280009372.01.T01:CDS 30.0%
! GTTTTCACACAAGCATTTAT+TGG - Chr2:51025338-51025357 None:intergenic 30.0%
! GTTTTTCCTATAGGCTATTA+TGG + Chr2:51023406-51023425 MsG0280009372.01.T01:intron 30.0%
!! AATGGATTTTGAAAAAGGGT+TGG - Chr2:51022970-51022989 None:intergenic 30.0%
!! CTTTAAGGATCTTCACTTTT+CGG - Chr2:51025049-51025068 None:intergenic 30.0%
!! GGTTTGATTTGTACATTGTT+AGG + Chr2:51023198-51023217 MsG0280009372.01.T01:intron 30.0%
AAATTCATTCCCGAGATGAT+TGG + Chr2:51024969-51024988 MsG0280009372.01.T01:CDS 35.0%
AACCATCTAAAAAGTGGCTT+TGG + Chr2:51025451-51025470 MsG0280009372.01.T01:intron 35.0%
AACTTCCATTCTCATGTAAG+TGG - Chr2:51024071-51024090 None:intergenic 35.0%
AATTCATTCCCGAGATGATT+GGG + Chr2:51024970-51024989 MsG0280009372.01.T01:CDS 35.0%
ACAATCTAGTCAGATTAGAC+AGG + Chr2:51024655-51024674 MsG0280009372.01.T01:CDS 35.0%
AGATAGATATTTCGAGCAGA+GGG - Chr2:51023807-51023826 None:intergenic 35.0%
ATCCTGTGATTTGAAGGAAT+TGG + Chr2:51024941-51024960 MsG0280009372.01.T01:CDS 35.0%
ATTCTCATGTAAGTGGAAAG+AGG - Chr2:51024064-51024083 None:intergenic 35.0%
ATTTCACAACTGACAAACTG+AGG + Chr2:51024498-51024517 MsG0280009372.01.T01:CDS 35.0%
CTACGGATCTGAACAAATAA+AGG - Chr2:51024888-51024907 None:intergenic 35.0%
CTTTCCAAAAGCTCTCTATT+CGG + Chr2:51025256-51025275 MsG0280009372.01.T01:intron 35.0%
GAAATTGTTGGAGCTTGATT+TGG + Chr2:51025582-51025601 MsG0280009372.01.T01:exon 35.0%
GACAAGAAAAAAGACTGAAC+TGG + Chr2:51023934-51023953 MsG0280009372.01.T01:intron 35.0%
GTAGATCACATATCGCTATA+GGG - Chr2:51023785-51023804 None:intergenic 35.0%
TAGATAGATATTTCGAGCAG+AGG - Chr2:51023808-51023827 None:intergenic 35.0%
TCAAATATGCCAATCCAAAC+AGG + Chr2:51023523-51023542 MsG0280009372.01.T01:intron 35.0%
TCATGCTAAAAGAGAACAGA+AGG - Chr2:51025402-51025421 None:intergenic 35.0%
TCCTTGTAACCAAAACCAAT+GGG - Chr2:51024140-51024159 None:intergenic 35.0%
TCTTTCCACTTACATGAGAA+TGG + Chr2:51024063-51024082 MsG0280009372.01.T01:intron 35.0%
TGAACTGGCATTATCATGAT+GGG + Chr2:51023949-51023968 MsG0280009372.01.T01:intron 35.0%
TGATCTTGGAAAATTGATGG+AGG + Chr2:51025079-51025098 MsG0280009372.01.T01:CDS 35.0%
TTCCTTGTAACCAAAACCAA+TGG - Chr2:51024141-51024160 None:intergenic 35.0%
! ACATTGAGGATGTTTTGCAT+TGG + Chr2:51024587-51024606 MsG0280009372.01.T01:CDS 35.0%
! CTTTATTTGTTCAGATCCGT+AGG + Chr2:51024886-51024905 MsG0280009372.01.T01:intron 35.0%
! TAGAGTGTTTGAGGTTTCAT+TGG + Chr2:51024285-51024304 MsG0280009372.01.T01:CDS 35.0%
! TCGAAATATCTATCTAGCTC+TGG + Chr2:51023812-51023831 MsG0280009372.01.T01:intron 35.0%
! TGTTTCTATTTGGTCCTTGT+AGG + Chr2:51025482-51025501 MsG0280009372.01.T01:intron 35.0%
! TTTCATTGGCTGATCTTCAA+GGG + Chr2:51024299-51024318 MsG0280009372.01.T01:CDS 35.0%
!! AATAATGTTGGTCTTGCTTG+TGG - Chr2:51023909-51023928 None:intergenic 35.0%
!! ATCCAACACATGTTTTAGGT+AGG + Chr2:51024751-51024770 MsG0280009372.01.T01:intron 35.0%
!! CGAAATATCTATCTAGCTCT+GGG + Chr2:51023813-51023832 MsG0280009372.01.T01:intron 35.0%
!! TTTCTAAAGTATCGACTCCA+GGG + Chr2:51023987-51024006 MsG0280009372.01.T01:intron 35.0%
!!! AAATCACTGGTTTTGAACCT+AGG + Chr2:51024811-51024830 MsG0280009372.01.T01:intron 35.0%
!!! AACCAAAGCCACTTTTTAGA+TGG - Chr2:51025456-51025475 None:intergenic 35.0%
!!! GCTATTTAACCCATTGGTTT+TGG + Chr2:51024128-51024147 MsG0280009372.01.T01:intron 35.0%
!!! TTTTCTAAAGTATCGACTCC+AGG + Chr2:51023986-51024005 MsG0280009372.01.T01:intron 35.0%
AAAGCTCCCAAGTTTGATCT+TGG + Chr2:51025065-51025084 MsG0280009372.01.T01:CDS 40.0%
AACTGACAAACTGAGGTCAT+TGG + Chr2:51024505-51024524 MsG0280009372.01.T01:CDS 40.0%
AAGAACAAGCGGATCTCTAA+GGG + Chr2:51022913-51022932 MsG0280009372.01.T01:CDS 40.0%
AATCTCCTTCCCAATCATCT+CGG - Chr2:51024982-51025001 None:intergenic 40.0%
ACCATGCATTCAGGAAGATT+AGG + Chr2:51024329-51024348 MsG0280009372.01.T01:CDS 40.0%
ACCTAATCTTCCTGAATGCA+TGG - Chr2:51024333-51024352 None:intergenic 40.0%
AGAAGACAAAGCATGATCCT+AGG - Chr2:51024831-51024850 None:intergenic 40.0%
AGAGTTCTCACAGCAACAAT+GGG - Chr2:51022862-51022881 None:intergenic 40.0%
AGCATCATCCTGTGATTTGA+AGG + Chr2:51024935-51024954 MsG0280009372.01.T01:CDS 40.0%
AGCTATCTAAACAATCAGGG+AGG - Chr2:51023279-51023298 None:intergenic 40.0%
ATCCATTTGCCAAGAAGGAT+TGG + Chr2:51023056-51023075 MsG0280009372.01.T01:CDS 40.0%
ATTTGGTCCTTGTAGGTTCA+TGG + Chr2:51025489-51025508 MsG0280009372.01.T01:intron 40.0%
CAAGCTCCAACAATTTCAGT+AGG - Chr2:51025579-51025598 None:intergenic 40.0%
CTGAACTGGCATTATCATGA+TGG + Chr2:51023948-51023967 MsG0280009372.01.T01:intron 40.0%
CTGACTAGATTGTGCATAAC+AGG - Chr2:51024648-51024667 None:intergenic 40.0%
GAATGACAGATTGCTTCAGA+TGG + Chr2:51024253-51024272 MsG0280009372.01.T01:intron 40.0%
GACAGAGGAAAACAATACCT+TGG - Chr2:51023155-51023174 None:intergenic 40.0%
GACCAATTCCTTCAAATCAC+AGG - Chr2:51024946-51024965 None:intergenic 40.0%
GAGGAACCTACTGAAATTGT+TGG + Chr2:51025570-51025589 MsG0280009372.01.T01:CDS 40.0%
GATCAAACTTGGGAGCTTTA+AGG - Chr2:51025064-51025083 None:intergenic 40.0%
GCTATCTAAACAATCAGGGA+GGG - Chr2:51023278-51023297 None:intergenic 40.0%
GGGAAAGAAACTTCCAACAA+TGG - Chr2:51022842-51022861 None:intergenic 40.0%
GGTAGATCACATATCGCTAT+AGG - Chr2:51023786-51023805 None:intergenic 40.0%
GTAATCTCCATGAACCTACA+AGG - Chr2:51025499-51025518 None:intergenic 40.0%
GTCCTACCTAAAACATGTGT+TGG - Chr2:51024756-51024775 None:intergenic 40.0%
TAAGAACAAGCGGATCTCTA+AGG + Chr2:51022912-51022931 MsG0280009372.01.T01:CDS 40.0%
TACCAATCCTTCTTGGCAAA+TGG - Chr2:51023061-51023080 None:intergenic 40.0%
TCAAATCACAGGATGATGCT+TGG - Chr2:51024935-51024954 None:intergenic 40.0%
TCATCTCGGGAATGAATTTG+CGG - Chr2:51024968-51024987 None:intergenic 40.0%
TGAGAGCTGAAGATGTTCAA+GGG + Chr2:51024353-51024372 MsG0280009372.01.T01:CDS 40.0%
TGATCTCAACCATCTTCCTA+CGG - Chr2:51024905-51024924 None:intergenic 40.0%
TTCTTCACCTGGAAAACTGA+AGG - Chr2:51023097-51023116 None:intergenic 40.0%
TTGAGAGCTGAAGATGTTCA+AGG + Chr2:51024352-51024371 MsG0280009372.01.T01:CDS 40.0%
! ACTCAAGCATAGAGTGTTTG+AGG + Chr2:51024276-51024295 MsG0280009372.01.T01:CDS 40.0%
! AGTAGTCTTGACATCCACAT+GGG - Chr2:51024558-51024577 None:intergenic 40.0%
! CGGTATCCAACACATGTTTT+AGG + Chr2:51024747-51024766 MsG0280009372.01.T01:intron 40.0%
! CTAGCTGCTATTTAACCCAT+TGG + Chr2:51024122-51024141 MsG0280009372.01.T01:intron 40.0%
! GAAACCGAATAGAGAGCTTT+TGG - Chr2:51025263-51025282 None:intergenic 40.0%
! GTTTCATTGGCTGATCTTCA+AGG + Chr2:51024298-51024317 MsG0280009372.01.T01:CDS 40.0%
! GTTTTCCAGGTGAAGAATGT+CGG + Chr2:51023100-51023119 MsG0280009372.01.T01:CDS 40.0%
! TTCATTGGCTGATCTTCAAG+GGG + Chr2:51024300-51024319 MsG0280009372.01.T01:CDS 40.0%
!! CAATGGGTTAAATAGCAGCT+AGG - Chr2:51024124-51024143 None:intergenic 40.0%
!! TTCTAAAGTATCGACTCCAG+GGG + Chr2:51023988-51024007 MsG0280009372.01.T01:intron 40.0%
!! TTGGTTGTTACTTTGGTCAC+TGG + Chr2:51025183-51025202 MsG0280009372.01.T01:intron 40.0%
!! TTGTCAAATAGCGGGTAAAG+TGG - Chr2:51023673-51023692 None:intergenic 40.0%
!! TTTGCATTGGCTTTACCAAG+AGG + Chr2:51024600-51024619 MsG0280009372.01.T01:CDS 40.0%
!!! ACCCATTGGTTTTGGTTACA+AGG + Chr2:51024136-51024155 MsG0280009372.01.T01:intron 40.0%
AACTCTTGTTGAAGCCCATG+TGG + Chr2:51024541-51024560 MsG0280009372.01.T01:CDS 45.0%
ACATGTGTTGGATACCGTGT+TGG - Chr2:51024744-51024763 None:intergenic 45.0%
AGAACAAGCGGATCTCTAAG+GGG + Chr2:51022914-51022933 MsG0280009372.01.T01:CDS 45.0%
ATCTCCTTCCCAATCATCTC+GGG - Chr2:51024981-51025000 None:intergenic 45.0%
ATGTTGGCACAAAGGTAGAG+AGG + Chr2:51025526-51025545 MsG0280009372.01.T01:CDS 45.0%
CAAGGGGTAAATACTAGACG+TGG - Chr2:51025012-51025031 None:intergenic 45.0%
CACGAAGTATACTCAGTCCA+AGG - Chr2:51023550-51023569 None:intergenic 45.0%
CAGAGTTCTCACAGCAACAA+TGG - Chr2:51022863-51022882 None:intergenic 45.0%
CGGATGAACACATTCTGCAA+GGG - Chr2:51025029-51025048 None:intergenic 45.0%
GATCCGCTTGTTCTTACCAA+CGG - Chr2:51022908-51022927 None:intergenic 45.0%
GGATGAACACATTCTGCAAG+GGG - Chr2:51025028-51025047 None:intergenic 45.0%
GGTTCATGGAGATTACTCTG+AGG + Chr2:51025503-51025522 MsG0280009372.01.T01:intron 45.0%
TCGGATGAACACATTCTGCA+AGG - Chr2:51025030-51025049 None:intergenic 45.0%
TCTTGCAGTGCAGAAAACAG+CGG + Chr2:51023611-51023630 MsG0280009372.01.T01:intron 45.0%
TGCTGATCCATTTGCCAAGA+AGG + Chr2:51023051-51023070 MsG0280009372.01.T01:CDS 45.0%
TGTTCAGATCCGTAGGAAGA+TGG + Chr2:51024893-51024912 MsG0280009372.01.T01:intron 45.0%
! ATCTCTAAGGGGAAGAAAGG+TGG + Chr2:51022925-51022944 MsG0280009372.01.T01:CDS 45.0%
! CAGTAGTCTTGACATCCACA+TGG - Chr2:51024559-51024578 None:intergenic 45.0%
! GGAGATTACTCTGAGGATGT+TGG + Chr2:51025510-51025529 MsG0280009372.01.T01:CDS 45.0%
! TAAGGCTCCTTCAGTTTTCC+AGG + Chr2:51023087-51023106 MsG0280009372.01.T01:CDS 45.0%
! TTCCAACAATGGCACCGTTT+TGG - Chr2:51022831-51022850 None:intergenic 45.0%
!! ATATTATGAAAATAAATATT+GGG - Chr2:51025147-51025166 None:intergenic 5.0%
!!! AACAAAATTAAAATTTTAAA+AGG - Chr2:51025377-51025396 None:intergenic 5.0%
!!! ATTTTTTTTTTTTATTTACA+GGG + Chr2:51024470-51024489 MsG0280009372.01.T01:intron 5.0%
ACTCAGTCCAAGGACCTGTT+TGG - Chr2:51023540-51023559 None:intergenic 50.0%
AGAGAGGCCTGCTGATGAAA+TGG + Chr2:51025542-51025561 MsG0280009372.01.T01:CDS 50.0%
CATAACAGGTCCTCTTCACC+TGG - Chr2:51024634-51024653 None:intergenic 50.0%
CATTCCCGAGATGATTGGGA+AGG + Chr2:51024974-51024993 MsG0280009372.01.T01:CDS 50.0%
CTTGCAGTGCAGAAAACAGC+GGG + Chr2:51023612-51023631 MsG0280009372.01.T01:intron 50.0%
CTTGTTCTTACCAACGGCCA+TGG - Chr2:51022902-51022921 None:intergenic 50.0%
GCCTGCTGATGAAATGGTGA+CGG + Chr2:51025548-51025567 MsG0280009372.01.T01:CDS 50.0%
GTCCAAGGACCTGTTTGGAT+TGG - Chr2:51023535-51023554 None:intergenic 50.0%
TACCAAGAGGAGAGCTAACC+AGG + Chr2:51024613-51024632 MsG0280009372.01.T01:CDS 50.0%
TCCGTCACCATTTCATCAGC+AGG - Chr2:51025552-51025571 None:intergenic 50.0%
TCTTGCCGACATTCTTCACC+TGG - Chr2:51023108-51023127 None:intergenic 50.0%
TGAGGTCATTGGTGCGTAAG+TGG + Chr2:51024516-51024535 MsG0280009372.01.T01:CDS 50.0%
TGCCAATCCAAACAGGTCCT+TGG + Chr2:51023530-51023549 MsG0280009372.01.T01:intron 50.0%
! CGGATCTCTAAGGGGAAGAA+AGG + Chr2:51022922-51022941 MsG0280009372.01.T01:CDS 50.0%
! CTCTGAGGATGTTGGCACAA+AGG + Chr2:51025518-51025537 MsG0280009372.01.T01:CDS 50.0%
! TGGCCGTTGGTAAGAACAAG+CGG + Chr2:51022902-51022921 MsG0280009372.01.T01:CDS 50.0%
!! ATGTTGGTCTTGCTTGTGGC+AGG - Chr2:51023905-51023924 None:intergenic 50.0%
!! TGCTGATGAAATGGTGACGG+AGG + Chr2:51025551-51025570 MsG0280009372.01.T01:CDS 50.0%
!! TGTTGGTCTTGCTTGTGGCA+GGG - Chr2:51023904-51023923 None:intergenic 50.0%
ACCCTCGTGTCTCGTACTCA+GGG + Chr2:51023127-51023146 MsG0280009372.01.T01:CDS 55.0%
ACCCTGAGTACGAGACACGA+GGG - Chr2:51023131-51023150 None:intergenic 55.0%
ACTCTGCAAACCATGGCCGT+TGG + Chr2:51022889-51022908 MsG0280009372.01.T01:exon 55.0%
CATGGGAATGTCATGTCCCC+TGG - Chr2:51024007-51024026 None:intergenic 55.0%
GGAGAGCTAACCAGGTGAAG+AGG + Chr2:51024621-51024640 MsG0280009372.01.T01:CDS 55.0%
GGGACGAAGACCATGCATTC+AGG + Chr2:51024320-51024339 MsG0280009372.01.T01:CDS 55.0%
TACCCTGAGTACGAGACACG+AGG - Chr2:51023132-51023151 None:intergenic 55.0%
! CACCTGGTTAGCTCTCCTCT+TGG - Chr2:51024618-51024637 None:intergenic 55.0%
! GTCTCGTACTCAGGGTACCA+AGG + Chr2:51023135-51023154 MsG0280009372.01.T01:CDS 55.0%
CTTGTGGCAGGGCAGAAGTG+GGG - Chr2:51023893-51023912 None:intergenic 60.0%
GACCCTCGTGTCTCGTACTC+AGG + Chr2:51023126-51023145 MsG0280009372.01.T01:CDS 60.0%
GAGCCGCACTCTGCAAACCA+TGG + Chr2:51022882-51022901 MsG0280009372.01.T01:exon 60.0%
GCTTGTGGCAGGGCAGAAGT+GGG - Chr2:51023894-51023913 None:intergenic 60.0%
TGCTTGTGGCAGGGCAGAAG+TGG - Chr2:51023895-51023914 None:intergenic 60.0%
! CGGCCATGGTTTGCAGAGTG+CGG - Chr2:51022888-51022907 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 51022830 51025782 51022830 ID=MsG0280009372.01;Name=MsG0280009372.01
Chr2 mRNA 51022830 51025782 51022830 ID=MsG0280009372.01.T01;Parent=MsG0280009372.01;Name=MsG0280009372.01.T01;_AED=0.49;_eAED=0.49;_QI=71|1|1|1|0.8|0.83|6|183|261
Chr2 exon 51022830 51022959 51022830 ID=MsG0280009372.01.T01:exon:24037;Parent=MsG0280009372.01.T01
Chr2 exon 51023051 51023156 51023051 ID=MsG0280009372.01.T01:exon:24038;Parent=MsG0280009372.01.T01
Chr2 exon 51024262 51024399 51024262 ID=MsG0280009372.01.T01:exon:24039;Parent=MsG0280009372.01.T01
Chr2 exon 51024491 51024676 51024491 ID=MsG0280009372.01.T01:exon:24040;Parent=MsG0280009372.01.T01
Chr2 exon 51024900 51025100 51024900 ID=MsG0280009372.01.T01:exon:24041;Parent=MsG0280009372.01.T01
Chr2 exon 51025504 51025782 51025504 ID=MsG0280009372.01.T01:exon:24042;Parent=MsG0280009372.01.T01
Chr2 five_prime_UTR 51022830 51022900 51022830 ID=MsG0280009372.01.T01:five_prime_utr;Parent=MsG0280009372.01.T01
Chr2 CDS 51022901 51022959 51022901 ID=MsG0280009372.01.T01:cds;Parent=MsG0280009372.01.T01
Chr2 CDS 51023051 51023156 51023051 ID=MsG0280009372.01.T01:cds;Parent=MsG0280009372.01.T01
Chr2 CDS 51024262 51024399 51024262 ID=MsG0280009372.01.T01:cds;Parent=MsG0280009372.01.T01
Chr2 CDS 51024491 51024676 51024491 ID=MsG0280009372.01.T01:cds;Parent=MsG0280009372.01.T01
Chr2 CDS 51024900 51025100 51024900 ID=MsG0280009372.01.T01:cds;Parent=MsG0280009372.01.T01
Chr2 CDS 51025504 51025599 51025504 ID=MsG0280009372.01.T01:cds;Parent=MsG0280009372.01.T01
Chr2 three_prime_UTR 51025600 51025782 51025600 ID=MsG0280009372.01.T01:three_prime_utr;Parent=MsG0280009372.01.T01
Gene Sequence

>MsG0280009372.01.T01

ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCTGCTGATCCATTTGCCAAGAAGGATTGGTATGATATTAAGGCTCCTTCAGTTTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTGTCTCGTACTCAGGGTACCAAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGACGAAGACCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTCTGGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAAACTCTTGTTGAAGCCCATGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGCTTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGTCAGATTAGACAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCCTGTGATTTGAAGGAATTGGTCCGCAAATTCATTCCCGAGATGATTGGGAAGGAGATTGAGAAAGCCACGTCTAGTATTTACCCCTTGCAGAATGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCATGGAGATTACTCTGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGTGACGGAGGAACCTACTGAAATTGTTGGAGCTTGA

Protein sequence

>MsG0280009372.01.T01

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLVEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADEMVTEEPTEIVGA*