AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018243.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018243.01.T01 MTR_4g008070 78.378 111 9 1 93 203 1 96 4.76e-59 181
MsG0480018243.01.T01 MTR_4g008070 93.182 44 3 0 1 44 1 44 1.35e-20 83.2
MsG0480018243.01.T01 MTR_3g100050 51.408 142 53 4 35 171 104 234 2.34e-33 122
MsG0480018243.01.T01 MTR_5g066510 52.846 123 44 4 52 171 126 237 2.35e-30 113
MsG0480018243.01.T01 MTR_3g100040 51.923 104 41 3 70 171 36 132 8.06e-28 106
MsG0480018243.01.T01 MTR_3g100040 51.923 104 41 3 70 171 140 236 1.70e-27 107
MsG0480018243.01.T01 MTR_4g093730 51.961 102 42 2 70 171 117 211 6.41e-26 102
MsG0480018243.01.T01 MTR_5g066510 50.000 80 29 3 52 131 126 194 7.51e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018243.01.T01 AT1G51600 65.686 102 35 0 70 171 156 257 1.59e-42 145
MsG0480018243.01.T01 AT1G51600 65.686 102 35 0 70 171 156 257 1.59e-42 145
MsG0480018243.01.T01 AT3G21175 59.804 102 41 0 70 171 152 253 1.65e-38 135
MsG0480018243.01.T01 AT3G21175 59.804 102 41 0 70 171 150 251 1.74e-38 135
MsG0480018243.01.T01 AT4G24470 55.660 106 30 4 72 171 154 248 8.32e-30 112
MsG0480018243.01.T01 AT4G24470 55.660 106 30 4 72 171 154 248 8.49e-30 112
MsG0480018243.01.T01 AT4G24470 55.660 106 30 4 72 171 154 248 8.49e-30 112
MsG0480018243.01.T01 AT3G21175 59.615 52 21 0 70 121 150 201 3.30e-13 66.6

Find 56 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGGGTTCTTGGGCCTTC+AGG 0.235694 4:+2108399 None:intergenic
TGGACTTCTGTGGGCAAATA+AGG 0.252080 4:-2108367 MsG0480018243.01.T01:intron
CAAGCATTGCAGAGGGTTCT+TGG 0.293230 4:+2108390 None:intergenic
TTCTGTTCGTAGCCATTGAC+TGG 0.328675 4:-2107813 MsG0480018243.01.T01:intron
TTTAGGATGCAAAGAAATAA+AGG 0.333460 4:-2108765 MsG0480018243.01.T01:intron
TTTAGGATGCAAAGAAATAA+AGG 0.333460 4:-2111177 None:intergenic
TATATGCAAAAGTTGTTAGT+TGG 0.361179 4:-2107713 MsG0480018243.01.T01:CDS
CGGAACAAGTGAAGGTTTGA+TGG 0.376343 4:-2108685 MsG0480018243.01.T01:CDS
CGGAACAAGTGAAGGTTTGA+TGG 0.376343 4:-2111097 MsG0480018243.01.T01:CDS
ATATGCAAAAGTTGTTAGTT+GGG 0.418267 4:-2107712 MsG0480018243.01.T01:CDS
AAGCATTGCAGAGGGTTCTT+GGG 0.424963 4:+2108391 None:intergenic
TTACACATTATCTTGCTGTT+GGG 0.431240 4:+2111059 None:intergenic
TTCCTGCAAATCTGAAAAGA+AGG 0.433348 4:+2107776 None:intergenic
CTTACACATTATCCTGCTGT+TGG 0.456856 4:+2108646 None:intergenic
CTTACACATTATCTTGCTGT+TGG 0.457624 4:+2111058 None:intergenic
AGACTCATCATGGTTGGACT+TGG 0.463495 4:+2108728 None:intergenic
TGGACTTGGCAGATGTAAAT+CGG 0.465549 4:+2108742 None:intergenic
TGGACTTGGCAGATGTAAAT+CGG 0.465549 4:+2111154 None:intergenic
TTACACATTATCCTGCTGTT+GGG 0.481883 4:+2108647 None:intergenic
AGACTCGTCAAGGTTGGACT+TGG 0.483851 4:+2110017 None:intergenic
AGACTCGTCATGGTTGGACT+TGG 0.484402 4:+2111140 None:intergenic
TCAGGTCCACGCCGCATCGT+TGG 0.497989 4:+2108417 None:intergenic
CAGCCGATGCAGACTCATCA+TGG 0.498772 4:+2108718 None:intergenic
TGGACTTGGAAGATGTAAAT+CGG 0.500050 4:+2110031 None:intergenic
TTTAGGATGCAAAGAAGTAA+AGG 0.501385 4:-2110054 MsG0480018243.01.T01:intron
AATGGGAGGTAGTAGAAGAC+TGG 0.501501 4:-2107752 MsG0480018243.01.T01:CDS
CAATGCTTGTGGACTTCTGT+GGG 0.512002 4:-2108376 MsG0480018243.01.T01:CDS
GCAATGCTTGTGGACTTCTG+TGG 0.515681 4:-2108377 MsG0480018243.01.T01:CDS
TTCGTAGAGAGGTAGCATTA+AGG 0.536977 4:-2109927 MsG0480018243.01.T01:intron
AGAACCCTCTGCAATGCTTG+TGG 0.537519 4:-2108387 MsG0480018243.01.T01:CDS
AAGACTGGGCGTTCAACCTA+AGG 0.539804 4:-2107737 MsG0480018243.01.T01:CDS
ATGAATTGCGGAACAAGTGA+AGG 0.546961 4:-2108693 MsG0480018243.01.T01:CDS
ATGAATTGCGGAACAAGTGA+AGG 0.546961 4:-2111105 MsG0480018243.01.T01:CDS
AATGAGTTGCGAAACGCGGA+AGG 0.558566 4:-2109983 MsG0480018243.01.T01:CDS
CAGCCGATGCAGACTCGTCA+TGG 0.558934 4:+2111130 None:intergenic
TCTGTTCGTAGCCATTGACT+GGG 0.562926 4:-2107812 MsG0480018243.01.T01:intron
TGAAACATAAGCCCAGTCAA+TGG 0.568944 4:+2107801 None:intergenic
TGATGCAGACTCGTCAAGGT+TGG 0.569658 4:+2110011 None:intergenic
CAGCTGATGCAGACTCGTCA+AGG 0.577397 4:+2110007 None:intergenic
ACGATGCGGCGTGGACCTGA+AGG 0.583947 4:-2108414 MsG0480018243.01.T01:CDS
CAACGATGGATCCCAACAGC+AGG 0.584413 4:-2108658 MsG0480018243.01.T01:CDS
CGATGCAGACTCATCATGGT+TGG 0.584481 4:+2108722 None:intergenic
CAACCATGACGAGTCTGCAT+CGG 0.589195 4:-2111133 MsG0480018243.01.T01:CDS
CGATGCAGACTCGTCATGGT+TGG 0.592233 4:+2111134 None:intergenic
CTGAAATGAGTTGCGAAACG+CGG 0.599299 4:-2109987 MsG0480018243.01.T01:CDS
CAACCATGATGAGTCTGCAT+CGG 0.601385 4:-2108721 MsG0480018243.01.T01:CDS
TCGGTATAATGTTCGTAGAG+AGG 0.616329 4:-2109938 MsG0480018243.01.T01:CDS
GGTTTGATGGCAGACAATGA+TGG 0.622019 4:-2111084 MsG0480018243.01.T01:CDS
ATGGGAGGTAGTAGAAGACT+GGG 0.636419 4:-2107751 MsG0480018243.01.T01:CDS
GCATCGGCTGAAATGAATTG+CGG 0.643791 4:-2108705 MsG0480018243.01.T01:CDS
GCATCGGCTGAAATGAATTG+CGG 0.643791 4:-2111117 MsG0480018243.01.T01:CDS
TGCACGCCAACGATGCGGCG+TGG 0.646226 4:-2108423 MsG0480018243.01.T01:CDS
GAAGTCCACAAGCATTGCAG+AGG 0.650799 4:+2108382 None:intergenic
AGAAGTGCACGCCAACGATG+CGG 0.657729 4:-2108428 MsG0480018243.01.T01:CDS
AAGTCCACAAGCATTGCAGA+GGG 0.669436 4:+2108383 None:intergenic
GGTTTGATGGCAGACAACGA+TGG 0.718774 4:-2108672 MsG0480018243.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATTGTATAAGAAAA+TGG - Chr4:2109764-2109783 MsG0480018243.01.T01:intron 10.0%
!! CACATATAATAAAATAACTT+CGG + Chr4:2108750-2108769 None:intergenic 15.0%
!! CCATTTATCAAATAATATAA+AGG + Chr4:2110361-2110380 None:intergenic 15.0%
!! CCTTTATATTATTTGATAAA+TGG - Chr4:2110358-2110377 MsG0480018243.01.T01:intron 15.0%
!! GTATTCTAATCTATATATTA+TGG - Chr4:2110273-2110292 MsG0480018243.01.T01:intron 15.0%
!!! AAAATTTTGACAAAAAAGTT+CGG - Chr4:2108897-2108916 MsG0480018243.01.T01:intron 15.0%
!!! TAAAAACTAAAAGTGTTTTT+AGG + Chr4:2109573-2109592 None:intergenic 15.0%
!! ACTATATATTGTTTCAGTTT+CGG - Chr4:2109392-2109411 MsG0480018243.01.T01:intron 20.0%
!! ATAACTTTGCAAATTTAAAG+TGG - Chr4:2108282-2108301 MsG0480018243.01.T01:intron 20.0%
!! ATATCATTCTTTATGGAATA+AGG + Chr4:2108264-2108283 None:intergenic 20.0%
!! CAAAGTTATATCATTCTTTA+TGG + Chr4:2108271-2108290 None:intergenic 20.0%
!! CACATAAAACAAAATAATGT+CGG + Chr4:2110039-2110058 None:intergenic 20.0%
!! CATAAAGAATGATATAACTT+TGG - Chr4:2108269-2108288 MsG0480018243.01.T01:intron 20.0%
!! TAGAAGATTATCATTACATA+TGG + Chr4:2109894-2109913 None:intergenic 20.0%
!! TTAGAAATTGTAAACGAAAA+TGG - Chr4:2108468-2108487 MsG0480018243.01.T01:intron 20.0%
!!! ATAACTTTGGAAATTTAAAG+TGG - Chr4:2109515-2109534 MsG0480018243.01.T01:intron 20.0%
!!! CTTGAAAATAAAGTCTTATT+TGG - Chr4:2110308-2110327 MsG0480018243.01.T01:intron 20.0%
!!! GATAGATATTTGCTTTTAAA+AGG - Chr4:2108079-2108098 MsG0480018243.01.T01:intron 20.0%
!!! GATAGATATTTGTTTCTTTT+GGG - Chr4:2109337-2109356 MsG0480018243.01.T01:intron 20.0%
!!! TAACTTTGCAAATTTAAAGT+GGG - Chr4:2108283-2108302 MsG0480018243.01.T01:intron 20.0%
!!! TAACTTTGGAAATTTAAAGT+GGG - Chr4:2109516-2109535 MsG0480018243.01.T01:intron 20.0%
!!! TGATAGATATTTGTTTCTTT+TGG - Chr4:2109336-2109355 MsG0480018243.01.T01:intron 20.0%
!!! TTAATTTTGAATTCCTAACA+AGG - Chr4:2108344-2108363 MsG0480018243.01.T01:intron 20.0%
! AAAAATAAGCCAATCCAAAA+GGG + Chr4:2109095-2109114 None:intergenic 25.0%
! AAACAAATATCTATCATTGC+AGG + Chr4:2109332-2109351 None:intergenic 25.0%
! AATTGTATAAGAAAATGGCA+AGG - Chr4:2109769-2109788 MsG0480018243.01.T01:intron 25.0%
! ATAAAGGACAATTTCAGTAT+AGG + Chr4:2110345-2110364 None:intergenic 25.0%
! ATAATTGTATGAAGCAACAT+TGG + Chr4:2110563-2110582 None:intergenic 25.0%
! ATATCATTCTTTATGGCATA+AGG + Chr4:2109497-2109516 None:intergenic 25.0%
! ATATGCAAAAGTTGTTAGTT+GGG - Chr4:2111142-2111161 MsG0480018243.01.T01:CDS 25.0%
! ATTTCAGTTCATATTAGTCA+AGG - Chr4:2108174-2108193 MsG0480018243.01.T01:intron 25.0%
! CAAATACAAGTAACTTCTTT+AGG - Chr4:2110072-2110091 MsG0480018243.01.T01:intron 25.0%
! GAGAAGATAAAAAACAAACT+TGG - Chr4:2108403-2108422 MsG0480018243.01.T01:CDS 25.0%
! GAGAAGATTATCATTACATA+CGG + Chr4:2108608-2108627 None:intergenic 25.0%
! TATATGCAAAAGTTGTTAGT+TGG - Chr4:2111141-2111160 MsG0480018243.01.T01:CDS 25.0%
! TTGCTTCATACAATTATTAC+AGG - Chr4:2110566-2110585 MsG0480018243.01.T01:intron 25.0%
!! AACTTTGCAAATTTAAAGTG+GGG - Chr4:2108284-2108303 MsG0480018243.01.T01:intron 25.0%
!! AACTTTGGAAATTTAAAGTG+GGG - Chr4:2109517-2109536 MsG0480018243.01.T01:intron 25.0%
!! TATCATTACATATGGTGTTA+AGG + Chr4:2109886-2109905 None:intergenic 25.0%
!! TTACAGGTTAATCATGATTT+TGG - Chr4:2110582-2110601 MsG0480018243.01.T01:intron 25.0%
!! TTTAGGATGCAAAGAAATAA+AGG - Chr4:2110089-2110108 MsG0480018243.01.T01:intron 25.0%
!! TTTGAAGTAAAAATGTAAGC+AGG - Chr4:2108530-2108549 MsG0480018243.01.T01:intron 25.0%
!!! ACTGGTTTATTTTTGAACAA+GGG - Chr4:2107822-2107841 MsG0480018243.01.T01:intron 25.0%
!!! AGATATTTGCTTTTAAAAGG+AGG - Chr4:2108082-2108101 MsG0480018243.01.T01:intron 25.0%
!!! TATATCAGTTAAGCTTTAGA+TGG + Chr4:2108225-2108244 None:intergenic 25.0%
!!! TATGTTTTATTAATTCCACC+TGG - Chr4:2110852-2110871 MsG0480018243.01.T01:intron 25.0%
AAATATCTATCATTGCAGAC+TGG + Chr4:2108070-2108089 None:intergenic 30.0%
AAATGTGAAGATGCATAAAC+AGG + Chr4:2110956-2110975 None:intergenic 30.0%
AAGCAACATTGGAAAACAAA+AGG + Chr4:2110552-2110571 None:intergenic 30.0%
AATGTGAAGATGCATAAACA+GGG + Chr4:2110955-2110974 None:intergenic 30.0%
AATTGTAAACGAAAATGGTG+AGG - Chr4:2108473-2108492 MsG0480018243.01.T01:intron 30.0%
ACAATGACAGATAAATGAAG+GGG + Chr4:2110679-2110698 None:intergenic 30.0%
AGAGAAGATAGAAACAAACT+AGG - Chr4:2109667-2109686 MsG0480018243.01.T01:intron 30.0%
AGCATTAAGGTATGTTTAGA+GGG - Chr4:2108940-2108959 MsG0480018243.01.T01:intron 30.0%
ATTGTAAACGAAAATGGTGA+GGG - Chr4:2108474-2108493 MsG0480018243.01.T01:intron 30.0%
CAAAAATAAGCCAATCCAAA+AGG + Chr4:2109096-2109115 None:intergenic 30.0%
CAAATACAAGCAACTTCTTT+AGG - Chr4:2108783-2108802 MsG0480018243.01.T01:intron 30.0%
CACAATGACAGATAAATGAA+GGG + Chr4:2110680-2110699 None:intergenic 30.0%
CCTGTAATATTAAGCCAATT+CGG - Chr4:2110607-2110626 MsG0480018243.01.T01:intron 30.0%
GTTCATATTAGTTAAGGACT+TGG - Chr4:2109414-2109433 MsG0480018243.01.T01:intron 30.0%
GTTGAAGTAAAAATGAAAGC+AGG - Chr4:2109826-2109845 MsG0480018243.01.T01:intron 30.0%
GTTTCGGTTCATATTAGTTA+AGG - Chr4:2109408-2109427 MsG0480018243.01.T01:intron 30.0%
TAGCATTAAGGTATGTTTAG+AGG - Chr4:2108939-2108958 MsG0480018243.01.T01:intron 30.0%
TATGATTCATAAGCTTGTCA+AGG - Chr4:2107892-2107911 MsG0480018243.01.T01:intron 30.0%
TCACAATGACAGATAAATGA+AGG + Chr4:2110681-2110700 None:intergenic 30.0%
TCATTGTGAATGTGTTAAAG+TGG - Chr4:2110801-2110820 MsG0480018243.01.T01:intron 30.0%
TCATTGTGAATGTGTTTAAG+TGG - Chr4:2110692-2110711 MsG0480018243.01.T01:intron 30.0%
TTCAGATTTGCAGGAAAAAT+GGG - Chr4:2111085-2111104 MsG0480018243.01.T01:CDS 30.0%
TTTCAACTCATATCAGTTGT+AGG - Chr4:2110387-2110406 MsG0480018243.01.T01:intron 30.0%
TTTCAGATTTGCAGGAAAAA+TGG - Chr4:2111084-2111103 MsG0480018243.01.T01:CDS 30.0%
! AAGATAATGTGTAAGTTGAC+TGG - Chr4:2107804-2107823 MsG0480018243.01.T01:CDS 30.0%
! ATATTAAGCCAATTCGGTTT+TGG - Chr4:2110613-2110632 MsG0480018243.01.T01:intron 30.0%
! CAACTTTTGCATATAACCTT+AGG + Chr4:2111136-2111155 None:intergenic 30.0%
! CGAATTGGCTTAATATTACA+GGG + Chr4:2110609-2110628 None:intergenic 30.0%
! TTTAGGATGCAAAGAAGTAA+AGG - Chr4:2108800-2108819 MsG0480018243.01.T01:intron 30.0%
!! ACTATTACACTGCTTTAAGA+AGG + Chr4:2108638-2108657 None:intergenic 30.0%
!! CTATTACACTGCTTTAAGAA+GGG + Chr4:2108637-2108656 None:intergenic 30.0%
!! TATATCAGCTAAGCTTTAGA+TGG + Chr4:2109458-2109477 None:intergenic 30.0%
!! TTACACATTATCTTGCTGTT+GGG + Chr4:2107798-2107817 None:intergenic 30.0%
!! TTCTTTTGGGAATAGTATTC+AGG - Chr4:2108117-2108136 MsG0480018243.01.T01:intron 30.0%
!!! GACTGGTTTATTTTTGAACA+AGG - Chr4:2107821-2107840 MsG0480018243.01.T01:intron 30.0%
AAAAGGGTCAATGTTCTGTT+TGG + Chr4:2109079-2109098 None:intergenic 35.0%
AAATAATGTCGGTCAGAACA+TGG + Chr4:2110028-2110047 None:intergenic 35.0%
AATCCAAACAAGTCCATAGT+TGG - Chr4:2108033-2108052 MsG0480018243.01.T01:intron 35.0%
ACAATGAAGGAGAAGATGAA+TGG + Chr4:2110910-2110929 None:intergenic 35.0%
ACTCAGCATATAAACTTGAC+AGG + Chr4:2109970-2109989 None:intergenic 35.0%
AGATAAATGAAGGGGAAAAG+TGG + Chr4:2110671-2110690 None:intergenic 35.0%
ATCACATATGTTTGCGACAT+AGG + Chr4:2109645-2109664 None:intergenic 35.0%
CTATTACACTGCCTTAAGAA+AGG + Chr4:2109923-2109942 None:intergenic 35.0%
GAAAATGGCAAGGAAAATGT+TGG - Chr4:2109779-2109798 MsG0480018243.01.T01:intron 35.0%
GAAAATGGTGAGGGAAATAT+TGG - Chr4:2108483-2108502 MsG0480018243.01.T01:intron 35.0%
GATAAATGAAGGGGAAAAAG+TGG + Chr4:2110779-2110798 None:intergenic 35.0%
GGGGATTTGATGAATACATT+TGG - Chr4:2108303-2108322 MsG0480018243.01.T01:intron 35.0%
GTTCATATTAGTCAAGGACT+TGG - Chr4:2108180-2108199 MsG0480018243.01.T01:intron 35.0%
TCATCTTCTACTGAATCGTA+TGG - Chr4:2111004-2111023 MsG0480018243.01.T01:intron 35.0%
TGGACTTGGAAGATGTAAAT+CGG + Chr4:2108826-2108845 None:intergenic 35.0%
TGTGGGCAAATAAGGTAAAT+GGG - Chr4:2110495-2110514 MsG0480018243.01.T01:intron 35.0%
TTACACATTATCCTGCTGTT+GGG + Chr4:2110210-2110229 None:intergenic 35.0%
TTCCTGCAAATCTGAAAAGA+AGG + Chr4:2111081-2111100 None:intergenic 35.0%
TTGAATTCCTAACAAGGAGA+TGG - Chr4:2108350-2108369 MsG0480018243.01.T01:intron 35.0%
! AAACAGAACATTGACCCTTT+TGG - Chr4:2109078-2109097 MsG0480018243.01.T01:intron 35.0%
! AACTATGGACTTGTTTGGAT+TGG + Chr4:2108034-2108053 None:intergenic 35.0%
! ATAAGTTTTGCGAGACTCTT+TGG + Chr4:2109028-2109047 None:intergenic 35.0%
! CCGAATTGGCTTAATATTAC+AGG + Chr4:2110610-2110629 None:intergenic 35.0%
! CTTACACATTATCTTGCTGT+TGG + Chr4:2107799-2107818 None:intergenic 35.0%
! GTTAAAGTGGCATACTGATT+TGG - Chr4:2110814-2110833 MsG0480018243.01.T01:intron 35.0%
! GTTTAAGTGGCATACTGATT+TGG - Chr4:2110705-2110724 MsG0480018243.01.T01:intron 35.0%
!! TCTTTTGGGAAATAGTGTTC+TGG - Chr4:2109351-2109370 MsG0480018243.01.T01:intron 35.0%
AAGTCTTCCATCTCCTTGTT+AGG + Chr4:2108360-2108379 None:intergenic 40.0%
ACTCAGCAGATAAACTTGAC+AGG + Chr4:2108684-2108703 None:intergenic 40.0%
AGATTTGCAGGAAAAATGGG+AGG - Chr4:2111088-2111107 MsG0480018243.01.T01:CDS 40.0%
AGGATAATGTGTAAGCAGAC+TGG - Chr4:2110216-2110235 MsG0480018243.01.T01:intron 40.0%
ATGAATTGCGGAACAAGTGA+AGG - Chr4:2107749-2107768 MsG0480018243.01.T01:CDS 40.0%
ATGGTCAAACCTAAACCAAG+AGG + Chr4:2110891-2110910 None:intergenic 40.0%
CAATCCAAACGAGTTCATAG+TGG - Chr4:2109295-2109314 MsG0480018243.01.T01:intron 40.0%
CTGTGGGCAAATAAGGTAAA+TGG - Chr4:2110494-2110513 MsG0480018243.01.T01:intron 40.0%
CTTACACATTATCCTGCTGT+TGG + Chr4:2110211-2110230 None:intergenic 40.0%
CTTCTTCTTCCTCTTGGTTT+AGG - Chr4:2110879-2110898 MsG0480018243.01.T01:intron 40.0%
GAGATGCGAAGAAACAATGA+AGG + Chr4:2110923-2110942 None:intergenic 40.0%
TATACGGACCAAAACCGAAT+TGG + Chr4:2110624-2110643 None:intergenic 40.0%
TCGGTATAATGTTCGTAGAG+AGG - Chr4:2108916-2108935 MsG0480018243.01.T01:intron 40.0%
TGAAACATAAGCCCAGTCAA+TGG + Chr4:2111056-2111075 None:intergenic 40.0%
TGGACTTGGCAGATGTAAAT+CGG + Chr4:2107703-2107722 None:intergenic 40.0%
TTCGTAGAGAGGTAGCATTA+AGG - Chr4:2108927-2108946 MsG0480018243.01.T01:intron 40.0%
! AGAACTCCATTGGAGTGTTA+GGG + Chr4:2108576-2108595 None:intergenic 40.0%
! GAACATTGACCCTTTTGGAT+TGG - Chr4:2109083-2109102 MsG0480018243.01.T01:intron 40.0%
! GCTCACTCAGTGTTTCTTTT+GGG - Chr4:2108104-2108123 MsG0480018243.01.T01:intron 40.0%
! TGCCTTCTTTTCAGATTTGC+AGG - Chr4:2111076-2111095 MsG0480018243.01.T01:CDS 40.0%
!! TTCTAGCTCTGCCTTTCTTA+AGG - Chr4:2109909-2109928 MsG0480018243.01.T01:intron 40.0%
AACTGACCCTAACACTCCAA+TGG - Chr4:2108567-2108586 MsG0480018243.01.T01:intron 45.0%
AATGGGAGGTAGTAGAAGAC+TGG - Chr4:2111102-2111121 MsG0480018243.01.T01:CDS 45.0%
ACTGCCACTATGAACTCGTT+TGG + Chr4:2109302-2109321 None:intergenic 45.0%
AGACTCATCATGGTTGGACT+TGG + Chr4:2110129-2110148 None:intergenic 45.0%
AGAGGAAGAAGAAGAATGCC+AGG + Chr4:2110873-2110892 None:intergenic 45.0%
ATGGGAGGTAGTAGAAGACT+GGG - Chr4:2111103-2111122 MsG0480018243.01.T01:CDS 45.0%
CAACCATGATGAGTCTGCAT+CGG - Chr4:2110133-2110152 MsG0480018243.01.T01:intron 45.0%
CAATGCTTGTGGACTTCTGT+GGG - Chr4:2110478-2110497 MsG0480018243.01.T01:intron 45.0%
CGGAACAAGTGAAGGTTTGA+TGG - Chr4:2107757-2107776 MsG0480018243.01.T01:CDS 45.0%
CTGAAATGAGTTGCGAAACG+CGG - Chr4:2108867-2108886 MsG0480018243.01.T01:intron 45.0%
GAGCTTATGCGAAGCAACTT+AGG - Chr4:2109115-2109134 MsG0480018243.01.T01:intron 45.0%
GGCATTCTTCTTCTTCCTCT+TGG - Chr4:2110873-2110892 MsG0480018243.01.T01:intron 45.0%
GGTCAATGAACTGCCAACTA+TGG + Chr4:2108049-2108068 None:intergenic 45.0%
GTGTTAAGGCAGCAGTGTTA+GGG + Chr4:2109872-2109891 None:intergenic 45.0%
GTGTTCAGACAGAACTCCAT+TGG + Chr4:2108586-2108605 None:intergenic 45.0%
TGGACTTCTGTGGGCAAATA+AGG - Chr4:2110487-2110506 MsG0480018243.01.T01:intron 45.0%
TTCTGTTCGTAGCCATTGAC+TGG - Chr4:2111041-2111060 MsG0480018243.01.T01:intron 45.0%
! AAGCATTGCAGAGGGTTCTT+GGG + Chr4:2110466-2110485 None:intergenic 45.0%
! AAGTCCACAAGCATTGCAGA+GGG + Chr4:2110474-2110493 None:intergenic 45.0%
! CAGAACTCCATTGGAGTGTT+AGG + Chr4:2108577-2108596 None:intergenic 45.0%
! CTGCCAACTATGGACTTGTT+TGG + Chr4:2108039-2108058 None:intergenic 45.0%
! GGCTCACTCAGTGTTTCTTT+TGG - Chr4:2108103-2108122 MsG0480018243.01.T01:intron 45.0%
! GGTTTGATGGCAGACAATGA+TGG - Chr4:2107770-2107789 MsG0480018243.01.T01:CDS 45.0%
! TCTGTTCGTAGCCATTGACT+GGG - Chr4:2111042-2111061 MsG0480018243.01.T01:intron 45.0%
!! GCATCGGCTGAAATGAATTG+CGG - Chr4:2107737-2107756 MsG0480018243.01.T01:CDS 45.0%
!!! AATCTAATTTTTTTATTATA+CGG + Chr4:2110640-2110659 None:intergenic 5.0%
!!! TTAATTTTAAATTACTAATA+AGG - Chr4:2109609-2109628 MsG0480018243.01.T01:intron 5.0%
AAGACTGGGCGTTCAACCTA+AGG - Chr4:2111117-2111136 MsG0480018243.01.T01:CDS 50.0%
AATGAGTTGCGAAACGCGGA+AGG - Chr4:2108871-2108890 MsG0480018243.01.T01:intron 50.0%
AGAACCCTCTGCAATGCTTG+TGG - Chr4:2110467-2110486 MsG0480018243.01.T01:intron 50.0%
AGACTCGTCAAGGTTGGACT+TGG + Chr4:2108840-2108859 None:intergenic 50.0%
AGACTCGTCATGGTTGGACT+TGG + Chr4:2107717-2107736 None:intergenic 50.0%
CAACCATGACGAGTCTGCAT+CGG - Chr4:2107721-2107740 MsG0480018243.01.T01:CDS 50.0%
CGATGCAGACTCATCATGGT+TGG + Chr4:2110135-2110154 None:intergenic 50.0%
GCAATGCTTGTGGACTTCTG+TGG - Chr4:2110477-2110496 MsG0480018243.01.T01:intron 50.0%
GGAAGAAGAAGAATGCCAGG+TGG + Chr4:2110870-2110889 None:intergenic 50.0%
GGTGTTAAGGCAGCAGTGTT+AGG + Chr4:2109873-2109892 None:intergenic 50.0%
TGATGCAGACTCGTCAAGGT+TGG + Chr4:2108846-2108865 None:intergenic 50.0%
! CAAGCATTGCAGAGGGTTCT+TGG + Chr4:2110467-2110486 None:intergenic 50.0%
! GAAGTCCACAAGCATTGCAG+AGG + Chr4:2110475-2110494 None:intergenic 50.0%
! GGTTTGATGGCAGACAACGA+TGG - Chr4:2110182-2110201 MsG0480018243.01.T01:intron 50.0%
CAACGATGGATCCCAACAGC+AGG - Chr4:2110196-2110215 MsG0480018243.01.T01:intron 55.0%
CAGCCGATGCAGACTCATCA+TGG + Chr4:2110139-2110158 None:intergenic 55.0%
CAGCTGATGCAGACTCGTCA+AGG + Chr4:2108850-2108869 None:intergenic 55.0%
CGATGCAGACTCGTCATGGT+TGG + Chr4:2107723-2107742 None:intergenic 55.0%
! AGAAGTGCACGCCAACGATG+CGG - Chr4:2110426-2110445 MsG0480018243.01.T01:intron 55.0%
CAGAGGGTTCTTGGGCCTTC+AGG + Chr4:2110458-2110477 None:intergenic 60.0%
CAGCCGATGCAGACTCGTCA+TGG + Chr4:2107727-2107746 None:intergenic 60.0%
ACGATGCGGCGTGGACCTGA+AGG - Chr4:2110440-2110459 MsG0480018243.01.T01:intron 65.0%
TCAGGTCCACGCCGCATCGT+TGG + Chr4:2110440-2110459 None:intergenic 65.0%
TGCACGCCAACGATGCGGCG+TGG - Chr4:2110431-2110450 MsG0480018243.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 2107683 2111193 2107683 ID=MsG0480018243.01;Name=MsG0480018243.01
Chr4 mRNA 2107683 2111193 2107683 ID=MsG0480018243.01.T01;Parent=MsG0480018243.01;Name=MsG0480018243.01.T01;_AED=0.50;_eAED=0.72;_QI=0|0|0|1|1|1|5|0|217
Chr4 exon 2111063 2111193 2111063 ID=MsG0480018243.01.T01:exon:1101;Parent=MsG0480018243.01.T01
Chr4 exon 2109928 2110071 2109928 ID=MsG0480018243.01.T01:exon:1100;Parent=MsG0480018243.01.T01
Chr4 exon 2108651 2108782 2108651 ID=MsG0480018243.01.T01:exon:1099;Parent=MsG0480018243.01.T01
Chr4 exon 2108368 2108473 2108368 ID=MsG0480018243.01.T01:exon:1098;Parent=MsG0480018243.01.T01
Chr4 exon 2107683 2107823 2107683 ID=MsG0480018243.01.T01:exon:1097;Parent=MsG0480018243.01.T01
Chr4 CDS 2111063 2111193 2111063 ID=MsG0480018243.01.T01:cds;Parent=MsG0480018243.01.T01
Chr4 CDS 2109928 2110071 2109928 ID=MsG0480018243.01.T01:cds;Parent=MsG0480018243.01.T01
Chr4 CDS 2108651 2108782 2108651 ID=MsG0480018243.01.T01:cds;Parent=MsG0480018243.01.T01
Chr4 CDS 2108368 2108473 2108368 ID=MsG0480018243.01.T01:cds;Parent=MsG0480018243.01.T01
Chr4 CDS 2107683 2107823 2107683 ID=MsG0480018243.01.T01:cds;Parent=MsG0480018243.01.T01
Gene Sequence

>MsG0480018243.01.T01

ATGCAAAGAAATAAAGGCCGATTTACATCTGCCAAGTCCAACCATGACGAGTCTGCATCGGCTGAAATGAATTGCGGAACAAGTGAAGGTTTGATGGCAGACAATGATGGATCCCAACAGCAAGATAATGTGATGCAAAGAAGTAAAGGCCGATTTACATCTTCCAAGTCCAACCTTGACGAGTCTGCATCAGCTGAAATGAGTTGCGAAACGCGGAAGGAACAAAATTTTGACAAAAAAGTTCGGTATAATGTTCGTAGAGAGGTAGCATTAAGGATGCAAAGAAATAAAGGCCGATTTACATCTGCCAAGTCCAACCATGATGAGTCTGCATCGGCTGAAATGAATTGCGGAACAAGTGAAGGTTTGATGGCAGACAACGATGGATCCCAACAGCAGGATAATGTTTGTAGGCATTGTAACATCAGTGAGAAGTGCACGCCAACGATGCGGCGTGGACCTGAAGGCCCAAGAACCCTCTGCAATGCTTGTGGACTTCTGTGGGCAAATAAGCCATTGACTGGGCTTATGTTTCATGCCTTCTTTTCAGATTTGCAGGAAAAATGGGAGGTAGTAGAAGACTGGGCGTTCAACCTAAGGTTATATGCAAAAGTTGTTAGTTGGGATGATGAATTTGACGTTGTTGATGAATAA
Protein sequence

>MsG0480018243.01.T01

MQRNKGRFTSAKSNHDESASAEMNCGTSEGLMADNDGSQQQDNVMQRSKGRFTSSKSNLDESASAEMSCETRKEQNFDKKVRYNVRREVALRMQRNKGRFTSAKSNHDESASAEMNCGTSEGLMADNDGSQQQDNVCRHCNISEKCTPTMRRGPEGPRTLCNACGLLWANKPLTGLMFHAFFSDLQEKWEVVEDWAFNLRLYAKVVSWDDEFDVVDE*