AlfalfaGEDB | MsG0480018248.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018248.01

KEGG: -
GO: GO:0003700 GO:0005515 GO:0006355 GO:0008270 GO:0043565
PFAM: PF00320 PF06203

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018248.01.T01	XP_039687244.1	86.861	137	8	1	45	171	1	137	6.43E-78	240
MsG0480018248.01.T01	XP_039687244.1	95.455	44	2	0	1	44	59	102	4.33E-17	85.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018248.01.T01	Q8H1G0	65.686	102	35	0	70	171	156	257	1.56E-41	145

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018248.01.T01	A0A396HYL3	83.704	135	14	1	45	171	1	135	6.25e-75	232

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TFs/TRs:

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Gene ID	Type	Classification
MsG0480018248.01.T01	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0480018243.01	MsG0480018248.01	0.943310	1.516210e-102	2.023083e-97

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018248.01.T01	MTR_4g008070	78.378	111	9	1	93	203	1	96	4.76e-59	181
MsG0480018248.01.T01	MTR_4g008070	93.182	44	3	0	1	44	1	44	1.35e-20	83.2
MsG0480018248.01.T01	MTR_3g100050	51.408	142	53	4	35	171	104	234	2.34e-33	122
MsG0480018248.01.T01	MTR_5g066510	52.846	123	44	4	52	171	126	237	2.35e-30	113
MsG0480018248.01.T01	MTR_3g100040	51.923	104	41	3	70	171	36	132	8.06e-28	106
MsG0480018248.01.T01	MTR_3g100040	51.923	104	41	3	70	171	140	236	1.70e-27	107
MsG0480018248.01.T01	MTR_4g093730	51.961	102	42	2	70	171	117	211	6.41e-26	102
MsG0480018248.01.T01	MTR_5g066510	50.000	80	29	3	52	131	126	194	7.51e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018248.01.T01	AT1G51600	65.686	102	35	0	70	171	156	257	1.59e-42	145
MsG0480018248.01.T01	AT1G51600	65.686	102	35	0	70	171	156	257	1.59e-42	145
MsG0480018248.01.T01	AT3G21175	59.804	102	41	0	70	171	152	253	1.65e-38	135
MsG0480018248.01.T01	AT3G21175	59.804	102	41	0	70	171	150	251	1.74e-38	135
MsG0480018248.01.T01	AT4G24470	55.660	106	30	4	72	171	154	248	8.32e-30	112
MsG0480018248.01.T01	AT4G24470	55.660	106	30	4	72	171	154	248	8.49e-30	112
MsG0480018248.01.T01	AT4G24470	55.660	106	30	4	72	171	154	248	8.49e-30	112
MsG0480018248.01.T01	AT3G21175	59.615	52	21	0	70	121	150	201	3.30e-13	66.6

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Find 56 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGACTGGGCGTTCAACCTA+AGG	0.539804	4:-2196738	MsG0480018248.01.T01:CDS
AAGCATTGCAGAGGGTTCTT+GGG	0.424963	4:+2197397	None:intergenic
AAGTCCACAAGCATTGCAGA+GGG	0.669436	4:+2197389	None:intergenic
AATGAGTTGCGAAACGCGGA+AGG	0.558566	4:-2198990	MsG0480018248.01.T01:CDS
AATGGGAGGTAGTAGAAGAC+TGG	0.501501	4:-2196753	MsG0480018248.01.T01:CDS
ACGATGCGGCGTGGACCTGA+AGG	0.583947	4:-2197420	MsG0480018248.01.T01:CDS
AGAACCCTCTGCAATGCTTG+TGG	0.537519	4:-2197393	MsG0480018248.01.T01:CDS
AGAAGTGCACGCCAACGATG+CGG	0.657729	4:-2197434	MsG0480018248.01.T01:CDS
AGACTCATCATGGTTGGACT+TGG	0.463495	4:+2197734	None:intergenic
AGACTCGTCAAGGTTGGACT+TGG	0.483851	4:+2199024	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATCTATCATTGCAGAC+TGG	+	Chr4:2197072-2197091	None:intergenic	30.0%
AAATGTGAAGATGCATAAAC+AGG	+	Chr4:2199966-2199985	None:intergenic	30.0%
AATGTGAAGATGCATAAACA+GGG	+	Chr4:2199965-2199984	None:intergenic	30.0%
AATTGTAAACGAAAATGGTG+AGG	-	Chr4:2197477-2197496	MsG0480018248.01.T01:intron	30.0%
ACAATGACAGATAAATGAAG+GGG	+	Chr4:2199688-2199707	None:intergenic	30.0%
AGAGAAGATAGAAACAAACT+AGG	-	Chr4:2198672-2198691	MsG0480018248.01.T01:intron	30.0%
AGCAACATTGGAAAAACAAA+AGG	+	Chr4:2199557-2199576	None:intergenic	30.0%
AGCATTAAGGTATGTTTAGA+GGG	-	Chr4:2197944-2197963	MsG0480018248.01.T01:intron	30.0%
ATTGTAAACGAAAATGGTGA+GGG	-	Chr4:2197478-2197497	MsG0480018248.01.T01:intron	30.0%
CAAAAATAAGCCAATCCAAA+AGG	+	Chr4:2198100-2198119	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	2196684	2200203	2196684	ID=MsG0480018248.01;Name=MsG0480018248.01
Chr4	mRNA	2196684	2200203	2196684	ID=MsG0480018248.01.T01;Parent=MsG0480018248.01;Name=MsG0480018248.01.T01;_AED=0.58;_eAED=0.61;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|217
Chr4	exon	2200073	2200203	2200073	ID=MsG0480018248.01.T01:exon:1130;Parent=MsG0480018248.01.T01
Chr4	exon	2198935	2199078	2198935	ID=MsG0480018248.01.T01:exon:1129;Parent=MsG0480018248.01.T01
Chr4	exon	2197657	2197788	2197657	ID=MsG0480018248.01.T01:exon:1128;Parent=MsG0480018248.01.T01
Chr4	exon	2197374	2197479	2197374	ID=MsG0480018248.01.T01:exon:1127;Parent=MsG0480018248.01.T01
Chr4	exon	2196684	2196824	2196684	ID=MsG0480018248.01.T01:exon:1126;Parent=MsG0480018248.01.T01
Chr4	CDS	2200073	2200203	2200073	ID=MsG0480018248.01.T01:cds;Parent=MsG0480018248.01.T01
Chr4	CDS	2198935	2199078	2198935	ID=MsG0480018248.01.T01:cds;Parent=MsG0480018248.01.T01
Chr4	CDS	2197657	2197788	2197657	ID=MsG0480018248.01.T01:cds;Parent=MsG0480018248.01.T01
Chr4	CDS	2197374	2197479	2197374	ID=MsG0480018248.01.T01:cds;Parent=MsG0480018248.01.T01
Chr4	CDS	2196684	2196824	2196684	ID=MsG0480018248.01.T01:cds;Parent=MsG0480018248.01.T01

Gene Sequence

>MsG0480018248.01.T01

ATGCAAAGAAATAAAGGCCGATTTACATCTGCCAAGTCCAACCATGACGAGTCTGCATCGGCTGAAATGAATTGCGGAACAAGTGAAGGTTTGATGGCAGACAATGATGGATCCCAACAGCAAGATAATGTGATGCAAAGAAGTAAAGGCCGATTTACATCTTCCAAGTCCAACCTTGACGAGTCTGCATCAGCTGAAATGAGTTGCGAAACGCGGAAGGAACAAAATTTTGACAAAAAAGTTCGGTATAATGTTCGTAGAGAGGTAGCATTAAGGATGCAAAGAAATAAAGGCCGATTTACATCTGCCAAGTCCAACCATGATGAGTCTGCATCGGCTGAAATGAATTGCGGAACAAGTGAAGGTTTGATGGCAGACAACGATGGATCCCAACAGCAGGATAATGTTTGTAGGCATTGTAACATCAGTGAGAAGTGCACGCCAACGATGCGGCGTGGACCTGAAGGCCCAAGAACCCTCTGCAATGCTTGTGGACTTCTGTGGGCAAATAAGCCATTGACTGGGCTTATGTTTCATGCCTTCTTTTCAGATTTGCAGGAAAAATGGGAGGTAGTAGAAGACTGGGCGTTCAACCTAAGGTTATATGCAAAAGTTGTTAGTTGGGATGATGAATTTGACGTTGTTGATGAATAA

Protein sequence

>MsG0480018248.01.T01

MQRNKGRFTSAKSNHDESASAEMNCGTSEGLMADNDGSQQQDNVMQRSKGRFTSSKSNLDESASAEMSCETRKEQNFDKKVRYNVRREVALRMQRNKGRFTSAKSNHDESASAEMNCGTSEGLMADNDGSQQQDNVCRHCNISEKCTPTMRRGPEGPRTLCNACGLLWANKPLTGLMFHAFFSDLQEKWEVVEDWAFNLRLYAKVVSWDDEFDVVDE*