AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018283.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018283.01.T03 MTR_4g008840 92.182 307 22 2 1 305 1 307 0.0 580
MsG0480018283.01.T01 MTR_4g008840 93.859 863 46 3 1 856 1 863 0.0 1661
MsG0480018283.01.T02 MTR_4g008840 94.373 622 30 1 1 617 242 863 0.0 1213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018283.01.T03 AT2G47300 57.045 291 109 5 19 306 21 298 6.37e-103 318
MsG0480018283.01.T03 AT2G47300 57.045 291 109 5 19 306 21 298 2.07e-102 318
MsG0480018283.01.T03 AT2G47300 48.062 129 57 3 178 306 13 131 1.14e-25 107
MsG0480018283.01.T01 AT2G47300 48.161 843 382 17 19 850 21 819 0.0 684
MsG0480018283.01.T01 AT2G47300 46.871 783 361 17 19 790 21 759 0.0 606
MsG0480018283.01.T01 AT2G47300 44.347 681 330 15 178 850 13 652 3.47e-155 469
MsG0480018283.01.T02 AT2G47300 43.457 619 306 13 1 611 70 652 6.41e-138 417
MsG0480018283.01.T02 AT2G47300 43.457 619 306 13 1 611 237 819 2.80e-136 418
MsG0480018283.01.T02 AT2G47300 41.145 559 285 13 1 551 237 759 8.65e-107 339

Find 29 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGATGATTCTGTTCTTTC+TGG 0.054912 4:+2748964 MsG0480018283.01.T02:five_prime_UTR
AACAGAATCATCGTGATTTC+TGG 0.175577 4:-2748956 None:intergenic
GAAGAGAGTGAACCTCTTTC+TGG 0.216170 4:-2749328 None:intergenic
TCTGGGATGTGTTACTTCTA+TGG 0.285905 4:-2748938 None:intergenic
TTGCTGTTTCTTGTAGTTGA+AGG 0.317914 4:+2749022 MsG0480018283.01.T02:five_prime_UTR
GTTCTTTCTGGCACAACCTA+TGG 0.382892 4:+2748976 MsG0480018283.01.T02:five_prime_UTR
AGGATATGCTAATCTAAAAC+TGG 0.383974 4:+2749301 MsG0480018283.01.T02:CDS
GGAGCGATTGCCAGAGAAAC+TGG 0.401344 4:-2749110 None:intergenic
CTGGGATGTGTTACTTCTAT+GGG 0.416101 4:-2748937 None:intergenic
AGTTGGAGCACCAGTTTCTC+TGG 0.418667 4:+2749100 MsG0480018283.01.T02:five_prime_UTR
GGACGCCACATATAAGTTAC+AGG 0.429934 4:-2749131 None:intergenic
CATGCTTCTGCCTTTGAAGA+AGG 0.439897 4:+2749281 MsG0480018283.01.T02:CDS
GTTACTTTCAATATTAAGAA+TGG 0.454278 4:+2748900 MsG0480018283.01.T02:five_prime_UTR
TCTTGACAGCTTCATCAAGT+TGG 0.474132 4:+2749083 MsG0480018283.01.T02:five_prime_UTR
ACAGAATCATCGTGATTTCT+GGG 0.486757 4:-2748955 None:intergenic
ATGTGACAAATCAGAAAGAA+TGG 0.492645 4:+2749220 MsG0480018283.01.T02:CDS
TTGTCACATAAATCAACATC+GGG 0.503990 4:-2749206 None:intergenic
CAACTACAAGAAACAGCAAA+AGG 0.514790 4:-2749018 None:intergenic
CAAGAAAATGTCACAGACCT+AGG 0.526890 4:+2749161 MsG0480018283.01.T02:CDS
ATGTGTTACTTCTATGGGAG+AGG 0.535981 4:-2748932 None:intergenic
CACAACCTATGGAACATCAA+TGG 0.545794 4:+2748987 MsG0480018283.01.T02:five_prime_UTR
ACTCACCATTGATGTTCCAT+AGG 0.550955 4:-2748992 None:intergenic
ATTAGCATATCCTTCTTCAA+AGG 0.551594 4:-2749291 None:intergenic
AAAACTGGCATGCCAGAAAG+AGG 0.564161 4:+2749316 MsG0480018283.01.T02:CDS
TCGCTCCTGTAACTTATATG+TGG 0.576245 4:+2749126 MsG0480018283.01.T02:exon
TTTGTTTGACTGAAACAACA+TGG 0.610233 4:-2749047 None:intergenic
TTTGTCACATAAATCAACAT+CGG 0.614127 4:-2749207 None:intergenic
TGTGTTACTTCTATGGGAGA+GGG 0.628291 4:-2748931 None:intergenic
AAGCATGTATCCACACCCAA+AGG 0.635207 4:-2749265 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAATTATCAATAGAA+CGG - Chr4:2751774-2751793 None:intergenic 10.0%
!! AGGTAATTTATAAATATTAT+AGG + Chr4:2748812-2748831 MsG0480018283.01.T02:intron 10.0%
!!! AAAAAAACAATTATTCATTT+TGG + Chr4:2749675-2749694 MsG0480018283.01.T02:intron 10.0%
!!! ATATTAAATTTATTTCTCAA+GGG + Chr4:2751992-2752011 MsG0480018283.01.T02:intron 10.0%
!! AAATATATTCATAAACAACA+TGG - Chr4:2750707-2750726 None:intergenic 15.0%
!! AACAAATTTCACAAAAATAA+TGG - Chr4:2751828-2751847 None:intergenic 15.0%
!! AATATAATTATCAATAGAAC+GGG - Chr4:2751773-2751792 None:intergenic 15.0%
!! GTCATTTCAAAAAAATTAAA+AGG - Chr4:2750685-2750704 None:intergenic 15.0%
!! TAATATTTATAAATTACCTC+TGG - Chr4:2748811-2748830 None:intergenic 15.0%
!!! ATATTTTCTTTTTTTCTGAT+TGG + Chr4:2751788-2751807 MsG0480018283.01.T02:intron 15.0%
!!! GATATTAAATTTATTTCTCA+AGG + Chr4:2751991-2752010 MsG0480018283.01.T02:intron 15.0%
!!! TATTAAATTTATTTCTCAAG+GGG + Chr4:2751993-2752012 MsG0480018283.01.T02:intron 15.0%
!!! TATTTTCTTTTTTTCTGATT+GGG + Chr4:2751789-2751808 MsG0480018283.01.T02:intron 15.0%
!! AGAATCTCTAAGTTTATTAA+GGG + Chr4:2751562-2751581 MsG0480018283.01.T02:CDS 20.0%
!! ATATAATGTGAGTTCATATA+AGG - Chr4:2749844-2749863 None:intergenic 20.0%
!! ATATATCTTTATGGACTTTA+AGG + Chr4:2751722-2751741 MsG0480018283.01.T02:CDS 20.0%
!! ATGTAGAATCTAAAAACAAA+GGG - Chr4:2752281-2752300 None:intergenic 20.0%
!! GCATTCATTATATAGTTATA+TGG - Chr4:2750917-2750936 None:intergenic 20.0%
!! TAAGTATAAACACAACATAT+TGG + Chr4:2752422-2752441 MsG0480018283.01.T02:intron 20.0%
!! TACATTTACTATTATTCAGA+TGG + Chr4:2749928-2749947 MsG0480018283.01.T02:intron 20.0%
!! TATATGGTACACAATATAAA+AGG - Chr4:2750901-2750920 None:intergenic 20.0%
!! TATGTAGAATCTAAAAACAA+AGG - Chr4:2752282-2752301 None:intergenic 20.0%
!! TGAAATAGAAGTAACAATAT+GGG + Chr4:2752494-2752513 MsG0480018283.01.T02:intron 20.0%
!! TTGAAATAGAAGTAACAATA+TGG + Chr4:2752493-2752512 MsG0480018283.01.T02:intron 20.0%
!!! AAACAATTATTCATTTTGGA+TGG + Chr4:2749679-2749698 MsG0480018283.01.T02:intron 20.0%
!!! ACTTTTAGACTAAATTATTC+CGG + Chr4:2752251-2752270 MsG0480018283.01.T02:intron 20.0%
!!! ATTAAATTTATTTCTCAAGG+GGG + Chr4:2751994-2752013 MsG0480018283.01.T02:intron 20.0%
!!! CTTGTAAATTGATTTTATGT+TGG + Chr4:2753036-2753055 MsG0480018283.01.T02:intron 20.0%
!!! GAAATTTGAAATTTTAGAGT+TGG - Chr4:2751422-2751441 None:intergenic 20.0%
!!! GTTACTTTCAATATTAAGAA+TGG + Chr4:2748900-2748919 MsG0480018283.01.T02:five_prime_UTR 20.0%
!!! TTGGAAAAGAATAAAGATTT+TGG + Chr4:2750412-2750431 MsG0480018283.01.T02:CDS 20.0%
!!! TTTGTTGATTACATTATGTA+GGG + Chr4:2748583-2748602 MsG0480018283.01.T02:intron 20.0%
!!! TTTTATGATTATCTTGTAGA+TGG + Chr4:2750937-2750956 MsG0480018283.01.T02:intron 20.0%
!!! TTTTTTTTGTTTGAAAGCAA+AGG + Chr4:2750739-2750758 MsG0480018283.01.T02:intron 20.0%
! AAATATTCCTCCTTAGAAAA+AGG + Chr4:2753104-2753123 MsG0480018283.01.T02:three_prime_UTR 25.0%
! AAATTGGAATTAATTGGATC+AGG + Chr4:2750001-2750020 MsG0480018283.01.T02:CDS 25.0%
! AACATATTGGACATAAGTAT+AGG + Chr4:2752435-2752454 MsG0480018283.01.T02:intron 25.0%
! AAGTGTTCTATAGAAAGAAA+TGG - Chr4:2752334-2752353 None:intergenic 25.0%
! AAGTTACATTGCTACAAATA+GGG + Chr4:2753071-2753090 MsG0480018283.01.T02:three_prime_UTR 25.0%
! AATATTCCTCCTTAGAAAAA+GGG + Chr4:2753105-2753124 MsG0480018283.01.T02:three_prime_UTR 25.0%
! AATGTTATCTCTTACTGTTA+AGG + Chr4:2750273-2750292 MsG0480018283.01.T02:CDS 25.0%
! AATTGGAATTAATTGGATCA+GGG + Chr4:2750002-2750021 MsG0480018283.01.T02:CDS 25.0%
! ACAAACAAATCTAACTTACA+TGG - Chr4:2749765-2749784 None:intergenic 25.0%
! ACAGTATTTCAGAAAATCAT+TGG + Chr4:2750155-2750174 MsG0480018283.01.T02:intron 25.0%
! ACATATTGGACATAAGTATA+GGG + Chr4:2752436-2752455 MsG0480018283.01.T02:intron 25.0%
! AGGGTAATTATAAAATGTGA+GGG + Chr4:2752455-2752474 MsG0480018283.01.T02:intron 25.0%
! ATCCTTCTGATATATCTTTA+TGG + Chr4:2751713-2751732 MsG0480018283.01.T02:CDS 25.0%
! CAACATAAAGATTAGCAATA+TGG + Chr4:2751345-2751364 MsG0480018283.01.T02:CDS 25.0%
! CAGAATCTCTAAGTTTATTA+AGG + Chr4:2751561-2751580 MsG0480018283.01.T02:CDS 25.0%
! CATATAAGGTTTATTGTTCT+TGG - Chr4:2749830-2749849 None:intergenic 25.0%
! CGTATATCATAATTACTATG+TGG - Chr4:2752397-2752416 None:intergenic 25.0%
! CTCTTATAAAACATAGCTTA+CGG - Chr4:2751633-2751652 None:intergenic 25.0%
! CTTAATAAACTTAGAGATTC+TGG - Chr4:2751563-2751582 None:intergenic 25.0%
! CTTGCAAAATTGGAATTAAT+TGG + Chr4:2749995-2750014 MsG0480018283.01.T02:CDS 25.0%
! GCTGTTAAAAAATGATATGA+AGG + Chr4:2750621-2750640 MsG0480018283.01.T02:CDS 25.0%
! TAAACAAGTGAAAACTAAGA+CGG - Chr4:2750097-2750116 None:intergenic 25.0%
! TAAGTTACATTGCTACAAAT+AGG + Chr4:2753070-2753089 MsG0480018283.01.T02:three_prime_UTR 25.0%
! TAGGGTAATTATAAAATGTG+AGG + Chr4:2752454-2752473 MsG0480018283.01.T02:intron 25.0%
! TATTATACTTCCCTTAAGTT+GGG + Chr4:2750962-2750981 MsG0480018283.01.T02:CDS 25.0%
! TGTAGAATCTAAAAACAAAG+GGG - Chr4:2752280-2752299 None:intergenic 25.0%
! TTTGTCACATAAATCAACAT+CGG - Chr4:2749210-2749229 None:intergenic 25.0%
!! AAAAAAAGATGCATTTGTTG+TGG - Chr4:2751090-2751109 None:intergenic 25.0%
!! AAAAAGTTAGGTTGTAAATG+TGG + Chr4:2752113-2752132 MsG0480018283.01.T02:intron 25.0%
!! AAAAGTTAGGTTGTAAATGT+GGG + Chr4:2752114-2752133 MsG0480018283.01.T02:intron 25.0%
!! ATTTAAGATCTGTTGCTTAT+AGG + Chr4:2752963-2752982 MsG0480018283.01.T02:CDS 25.0%
!! CTCTTCTTTAATTTCATCTA+CGG + Chr4:2749345-2749364 MsG0480018283.01.T02:intron 25.0%
!! CTTTGTTGATTACATTATGT+AGG + Chr4:2748582-2748601 MsG0480018283.01.T02:intron 25.0%
!! TAAAATCCTTCATATTTTCC+TGG + Chr4:2752300-2752319 MsG0480018283.01.T02:intron 25.0%
!! TTAACAGTTTAACTTCAACA+GGG - Chr4:2749803-2749822 None:intergenic 25.0%
!! TTTAACAGTTTAACTTCAAC+AGG - Chr4:2749804-2749823 None:intergenic 25.0%
!!! ATAAAGATTTTGGAGACAAT+CGG + Chr4:2750422-2750441 MsG0480018283.01.T02:CDS 25.0%
!!! CATTTTTTAACAGCAGAATA+GGG - Chr4:2750615-2750634 None:intergenic 25.0%
!!! TCATTTTTTAACAGCAGAAT+AGG - Chr4:2750616-2750635 None:intergenic 25.0%
!!! TTCTATTATTTTTCTTGTGC+TGG + Chr4:2749388-2749407 MsG0480018283.01.T02:intron 25.0%
!!! TTGGTTCATAGCTTTATTTA+AGG + Chr4:2748857-2748876 MsG0480018283.01.T02:intron 25.0%
AAAGATATATCAGAAGGATG+TGG - Chr4:2751712-2751731 None:intergenic 30.0%
AATAGAGCCAATTTCAACTA+AGG + Chr4:2750333-2750352 MsG0480018283.01.T02:CDS 30.0%
AATGACCAAATTGCAAGAAA+GGG + Chr4:2748310-2748329 MsG0480018283.01.T02:five_prime_UTR 30.0%
AATGTTTCTCTTTATCCAGA+CGG + Chr4:2751159-2751178 MsG0480018283.01.T02:intron 30.0%
ACAACATGTAAAGATTCAGA+TGG + Chr4:2749591-2749610 MsG0480018283.01.T02:intron 30.0%
ACTCTCAAATTTCTTACAGA+AGG - Chr4:2751286-2751305 None:intergenic 30.0%
ATACATATACTTGTAGCCTT+AGG - Chr4:2748652-2748671 None:intergenic 30.0%
ATAGAAGTAACAATATGGGT+TGG + Chr4:2752498-2752517 MsG0480018283.01.T02:intron 30.0%
ATATTCCTCCTTAGAAAAAG+GGG + Chr4:2753106-2753125 MsG0480018283.01.T02:three_prime_UTR 30.0%
ATGTGACAAATCAGAAAGAA+TGG + Chr4:2749220-2749239 MsG0480018283.01.T02:CDS 30.0%
ATTAGCATATCCTTCTTCAA+AGG - Chr4:2749294-2749313 None:intergenic 30.0%
ATTATAAAATGTGAGGGGTT+TGG + Chr4:2752461-2752480 MsG0480018283.01.T02:intron 30.0%
CTATTATACTTCCCTTAAGT+TGG + Chr4:2750961-2750980 MsG0480018283.01.T02:CDS 30.0%
CTGTCATTAATGATCCAAAA+TGG + Chr4:2750118-2750137 MsG0480018283.01.T02:intron 30.0%
CTTAGAACCTTAGTTGAAAT+TGG - Chr4:2750343-2750362 None:intergenic 30.0%
GAGAAATAATGCTTGATACA+AGG + Chr4:2751584-2751603 MsG0480018283.01.T02:CDS 30.0%
GATGTATTTGAACTGGATTA+TGG + Chr4:2748623-2748642 MsG0480018283.01.T02:intron 30.0%
GCAATGATTATAAGTCTCAA+AGG + Chr4:2748260-2748279 MsG0480018283.01.T02:five_prime_UTR 30.0%
GGGTAATTATAAAATGTGAG+GGG + Chr4:2752456-2752475 MsG0480018283.01.T02:intron 30.0%
GTCCATAAAGATATATCAGA+AGG - Chr4:2751718-2751737 None:intergenic 30.0%
TAATGACCAAATTGCAAGAA+AGG + Chr4:2748309-2748328 MsG0480018283.01.T02:five_prime_UTR 30.0%
TATTTCAAAGAGAATTCCTC+CGG + Chr4:2752610-2752629 MsG0480018283.01.T02:CDS 30.0%
TGTGTGTTTCTCAACTAATT+AGG + Chr4:2751933-2751952 MsG0480018283.01.T02:intron 30.0%
TTAAGTCCAGGAAAATATGA+AGG - Chr4:2752309-2752328 None:intergenic 30.0%
TTCTATAGAACACTTTGACA+GGG + Chr4:2752339-2752358 MsG0480018283.01.T02:intron 30.0%
TTCTATAGTCCTAGAATATC+AGG + Chr4:2752997-2753016 MsG0480018283.01.T02:CDS 30.0%
TTGAAGAATAATTTACCCCA+TGG - Chr4:2750653-2750672 None:intergenic 30.0%
TTGTCACATAAATCAACATC+GGG - Chr4:2749209-2749228 None:intergenic 30.0%
TTGTTGAGATGTATTTGAAC+TGG + Chr4:2748616-2748635 MsG0480018283.01.T02:intron 30.0%
TTTAATATCGTGTAGACCAT+TGG - Chr4:2751980-2751999 None:intergenic 30.0%
TTTACTATCTCATCTAAGAG+AGG + Chr4:2752880-2752899 MsG0480018283.01.T02:CDS 30.0%
TTTCTATAGAACACTTTGAC+AGG + Chr4:2752338-2752357 MsG0480018283.01.T02:intron 30.0%
TTTGTTTGACTGAAACAACA+TGG - Chr4:2749050-2749069 None:intergenic 30.0%
! AAAGTTAGGTTGTAAATGTG+GGG + Chr4:2752115-2752134 MsG0480018283.01.T02:intron 30.0%
! AACCAAACCATTATTTTCAG+AGG - Chr4:2748843-2748862 None:intergenic 30.0%
! AAGTTAGATTTGTTTGTCCA+AGG + Chr4:2749768-2749787 MsG0480018283.01.T02:intron 30.0%
! AGGATATGCTAATCTAAAAC+TGG + Chr4:2749301-2749320 MsG0480018283.01.T02:CDS 30.0%
! TATTTTCAACGATACGTTGA+AGG - Chr4:2748234-2748253 None:intergenic 30.0%
! TTCTTCCTTTTGATCACATT+CGG - Chr4:2751254-2751273 None:intergenic 30.0%
! TTGTTCTTTTAGACACCTTT+GGG + Chr4:2749250-2749269 MsG0480018283.01.T02:CDS 30.0%
! TTTAAGGTTGTTCTGTTTAC+AGG + Chr4:2748873-2748892 MsG0480018283.01.T02:intron 30.0%
!! AAATGCTGAATCAGTTTTGA+AGG + Chr4:2748372-2748391 MsG0480018283.01.T02:five_prime_UTR 30.0%
!! ACTCTGTATTTTGAGAAACA+TGG - Chr4:2750213-2750232 None:intergenic 30.0%
!! AGGTTTTAACGTCAATATTC+AGG - Chr4:2750881-2750900 None:intergenic 30.0%
!! TTAGTTGAAATTGGCTCTAT+TGG - Chr4:2750334-2750353 None:intergenic 30.0%
!!! AGTTTTTAGTAACACTAACC+GGG + Chr4:2748679-2748698 MsG0480018283.01.T02:intron 30.0%
!!! CAGTTTTTAGTAACACTAAC+CGG + Chr4:2748678-2748697 MsG0480018283.01.T02:intron 30.0%
!!! TGAAATTTTAGAGTTGGACA+AGG - Chr4:2751416-2751435 None:intergenic 30.0%
!!! TGTCATTTTCCTGATATTCT+AGG - Chr4:2753009-2753028 None:intergenic 30.0%
AACAGAATCATCGTGATTTC+TGG - Chr4:2748959-2748978 None:intergenic 35.0%
AACTGGATTATGGTAACCTA+AGG + Chr4:2748633-2748652 MsG0480018283.01.T02:intron 35.0%
ACAGAATCATCGTGATTTCT+GGG - Chr4:2748958-2748977 None:intergenic 35.0%
AGAATTTAACCATGCGTTCA+CGG - Chr4:2750531-2750550 None:intergenic 35.0%
AGATATTGCATCCTGTTAGA+AGG + Chr4:2750044-2750063 MsG0480018283.01.T02:CDS 35.0%
AGGAGGAATATTTACCAACA+TGG - Chr4:2753097-2753116 None:intergenic 35.0%
AGTTCAGTGAAAAGTGAAGT+GGG + Chr4:2752556-2752575 MsG0480018283.01.T02:intron 35.0%
ATATGAAGGAATTGACCATG+GGG + Chr4:2750635-2750654 MsG0480018283.01.T02:CDS 35.0%
ATCCCAACATAAGCATGATT+GGG + Chr4:2749535-2749554 MsG0480018283.01.T02:intron 35.0%
ATGACCAAATTGCAAGAAAG+GGG + Chr4:2748311-2748330 MsG0480018283.01.T02:five_prime_UTR 35.0%
ATGTCTGATATATGAGCCAA+TGG + Chr4:2751961-2751980 MsG0480018283.01.T02:intron 35.0%
ATGTTTCTCTTTATCCAGAC+GGG + Chr4:2751160-2751179 MsG0480018283.01.T02:intron 35.0%
CAAACAACAAACCTTCTAAC+AGG - Chr4:2750058-2750077 None:intergenic 35.0%
CAACTACAAGAAACAGCAAA+AGG - Chr4:2749021-2749040 None:intergenic 35.0%
CAGTTAGATTCTCTACAATG+AGG - Chr4:2752806-2752825 None:intergenic 35.0%
CATTTAATGGAACTGTAGCA+AGG + Chr4:2751455-2751474 MsG0480018283.01.T02:CDS 35.0%
CTCAAATTTCTTACAGAAGG+AGG - Chr4:2751283-2751302 None:intergenic 35.0%
GAATGCTTTGCCTATTTGAA+AGG + Chr4:2749497-2749516 MsG0480018283.01.T02:intron 35.0%
GATATGAAGGAATTGACCAT+GGG + Chr4:2750634-2750653 MsG0480018283.01.T02:CDS 35.0%
GTCTTCCATACTGAAAAATG+AGG + Chr4:2750231-2750250 MsG0480018283.01.T02:CDS 35.0%
GTTGCATTATAGCAATTGCT+TGG + Chr4:2752066-2752085 MsG0480018283.01.T02:intron 35.0%
TAGATTCATCTCTTCTTGCT+TGG + Chr4:2752216-2752235 MsG0480018283.01.T02:intron 35.0%
TATGCTCAGACTAATAGCAA+AGG - Chr4:2752759-2752778 None:intergenic 35.0%
TCAAAAAAGCCTTCCTTGAA+TGG - Chr4:2751667-2751686 None:intergenic 35.0%
TGATATGAAGGAATTGACCA+TGG + Chr4:2750633-2750652 MsG0480018283.01.T02:CDS 35.0%
TTATTTCCTTATGCAGCAGA+TGG + Chr4:2751532-2751551 MsG0480018283.01.T02:CDS 35.0%
TTCCATACTGAAAAATGAGG+AGG + Chr4:2750234-2750253 MsG0480018283.01.T02:CDS 35.0%
TTGTGTTTATTCAGAGGGAA+AGG + Chr4:2748703-2748722 MsG0480018283.01.T02:intron 35.0%
TTGTTGAGAAAGCTCAAACA+AGG + Chr4:2748736-2748755 MsG0480018283.01.T02:five_prime_UTR 35.0%
! AAAGAAATGGACTTAAGTCC+AGG - Chr4:2752321-2752340 None:intergenic 35.0%
! ATTTTTCCCTCAAGATTTCC+CGG + Chr4:2751189-2751208 MsG0480018283.01.T02:CDS 35.0%
! CAAACCATTATTTTCAGAGG+CGG - Chr4:2748840-2748859 None:intergenic 35.0%
! CCTAGATGACATGAATTTTG+GGG + Chr4:2750552-2750571 MsG0480018283.01.T02:CDS 35.0%
! GACTCTGAGAATGCATTTAA+TGG + Chr4:2751442-2751461 MsG0480018283.01.T02:CDS 35.0%
! GCCTAGATGACATGAATTTT+GGG + Chr4:2750551-2750570 MsG0480018283.01.T02:CDS 35.0%
! GTGACATTTTCTTGGAAAGT+TGG - Chr4:2749155-2749174 None:intergenic 35.0%
! GTTGTTCTTTTAGACACCTT+TGG + Chr4:2749249-2749268 MsG0480018283.01.T02:CDS 35.0%
! TGCCTAGATGACATGAATTT+TGG + Chr4:2750550-2750569 MsG0480018283.01.T02:CDS 35.0%
! TTGCCTATTTGAAAGGCTTT+TGG + Chr4:2749504-2749523 MsG0480018283.01.T02:intron 35.0%
!! AAGTAACAATATGGGTTGGT+TGG + Chr4:2752502-2752521 MsG0480018283.01.T02:intron 35.0%
!! ATCCTCCTCATTTTTCAGTA+TGG - Chr4:2750239-2750258 None:intergenic 35.0%
!! GTTGATTTCCCCTTTTTCTA+AGG - Chr4:2753117-2753136 None:intergenic 35.0%
!! TACCACAGAAACTTGCTATT+GGG + Chr4:2752023-2752042 MsG0480018283.01.T02:intron 35.0%
!! TTGCTGTTTCTTGTAGTTGA+AGG + Chr4:2749022-2749041 MsG0480018283.01.T02:five_prime_UTR 35.0%
!!! AAGGAAGGCTTTTTTGAAGA+GGG + Chr4:2751670-2751689 MsG0480018283.01.T02:CDS 35.0%
!!! GGAACAACAGTTTTTTTCAC+AGG - Chr4:2750313-2750332 None:intergenic 35.0%
!!! TTTTTTCATCGCTAACACCT+AGG - Chr4:2749181-2749200 None:intergenic 35.0%
AAGTGCAAAAGCCATTCTCA+GGG - Chr4:2748453-2748472 None:intergenic 40.0%
ACTCACCATTGATGTTCCAT+AGG - Chr4:2748995-2749014 None:intergenic 40.0%
AGGAGAAAGAGGCAAAAACT+TGG + Chr4:2748337-2748356 MsG0480018283.01.T02:five_prime_UTR 40.0%
AGTTCATCTTCAGCCATTCA+AGG + Chr4:2751651-2751670 MsG0480018283.01.T02:CDS 40.0%
ATACCTTCCTTGAACACAAG+CGG - Chr4:2752710-2752729 None:intergenic 40.0%
ATCAGTTGTTCTTCTCTCGA+GGG + Chr4:2749968-2749987 MsG0480018283.01.T02:CDS 40.0%
ATCATTCATGCGATGCATTC+AGG + Chr4:2752186-2752205 MsG0480018283.01.T02:intron 40.0%
CAACAGGGAAACTAAAACCT+TGG - Chr4:2749788-2749807 None:intergenic 40.0%
CAAGAAAATGTCACAGACCT+AGG + Chr4:2749161-2749180 MsG0480018283.01.T02:CDS 40.0%
CACAACCTATGGAACATCAA+TGG + Chr4:2748987-2749006 MsG0480018283.01.T02:five_prime_UTR 40.0%
CACACAGAACAATGAATCCT+AGG - Chr4:2751919-2751938 None:intergenic 40.0%
CACGATGATTCTGTTCTTTC+TGG + Chr4:2748964-2748983 MsG0480018283.01.T02:five_prime_UTR 40.0%
CAGATACCAGATGATTCAGT+TGG + Chr4:2752646-2752665 MsG0480018283.01.T02:CDS 40.0%
CAGTTCAGTGAAAAGTGAAG+TGG + Chr4:2752555-2752574 MsG0480018283.01.T02:intron 40.0%
CATCCCAACATAAGCATGAT+TGG + Chr4:2749534-2749553 MsG0480018283.01.T02:intron 40.0%
CCCCAAAATTCATGTCATCT+AGG - Chr4:2750555-2750574 None:intergenic 40.0%
CCTCTGAATAAACACAATCC+CGG - Chr4:2748700-2748719 None:intergenic 40.0%
CGGGATTGTGTTTATTCAGA+GGG + Chr4:2748698-2748717 MsG0480018283.01.T02:intron 40.0%
CTATGGTATGCTACAACAAG+AGG + Chr4:2750460-2750479 MsG0480018283.01.T02:CDS 40.0%
CTATTACTCTGCCGTTCAAT+TGG + Chr4:2748780-2748799 MsG0480018283.01.T02:five_prime_UTR 40.0%
CTCCCAATCATGCTTATGTT+GGG - Chr4:2749540-2749559 None:intergenic 40.0%
CTCTTACTGTTAAGGATCCT+CGG + Chr4:2750281-2750300 MsG0480018283.01.T02:CDS 40.0%
GACGTGACTAAAAAGCCTAA+AGG + Chr4:2748130-2748149 MsG0480018283.01.T02:five_prime_UTR 40.0%
GAGCCAAAAGCCTTTCAAAT+AGG - Chr4:2749510-2749529 None:intergenic 40.0%
GCGAAATATACGTACTTGTC+AGG + Chr4:2752939-2752958 MsG0480018283.01.T02:CDS 40.0%
GGGAAATCTTGAGGGAAAAA+TGG - Chr4:2751190-2751209 None:intergenic 40.0%
GTATTGTGAACAATACGCCA+TGG - Chr4:2751322-2751341 None:intergenic 40.0%
GTCAATATTCAGGCAATGCA+AGG - Chr4:2750871-2750890 None:intergenic 40.0%
GTTGGACAAGGAATTAGCAT+TGG - Chr4:2751404-2751423 None:intergenic 40.0%
TCAAATCTTCCCTAGCTGAA+AGG - Chr4:2751381-2751400 None:intergenic 40.0%
TCGCTCCTGTAACTTATATG+TGG + Chr4:2749126-2749145 MsG0480018283.01.T02:exon 40.0%
TCTAAAAACAAAGGGGAAGC+CGG - Chr4:2752273-2752292 None:intergenic 40.0%
TCTCTACCAACTGAATCATC+TGG - Chr4:2752655-2752674 None:intergenic 40.0%
TCTTACTGTTAAGGATCCTC+GGG + Chr4:2750282-2750301 MsG0480018283.01.T02:CDS 40.0%
TCTTGACAGCTTCATCAAGT+TGG + Chr4:2749083-2749102 MsG0480018283.01.T02:five_prime_UTR 40.0%
TGTTTCTCTTTATCCAGACG+GGG + Chr4:2751161-2751180 MsG0480018283.01.T02:intron 40.0%
TTACTCGACGAAACCAAAAC+TGG + Chr4:2751499-2751518 MsG0480018283.01.T02:CDS 40.0%
! AAGGCTTTGACCCAACTTAA+GGG - Chr4:2750975-2750994 None:intergenic 40.0%
! AGCTGCTAGTGTTTTATCCT+AGG + Chr4:2751899-2751918 MsG0480018283.01.T02:intron 40.0%
! ATTTTCCATGACCAAGCTGT+GGG + Chr4:2748522-2748541 MsG0480018283.01.T02:five_prime_UTR 40.0%
! CAAGCAAACATCAGCCATTT+TGG - Chr4:2750135-2750154 None:intergenic 40.0%
! CGCCTCTGAAAATAATGGTT+TGG + Chr4:2748838-2748857 MsG0480018283.01.T02:intron 40.0%
! CTAGGTCTGTGACATTTTCT+TGG - Chr4:2749163-2749182 None:intergenic 40.0%
! TTAGGTTGTAAATGTGGGGA+AGG + Chr4:2752119-2752138 MsG0480018283.01.T02:intron 40.0%
! TTTTTCACAGGTAAATCCCG+AGG - Chr4:2750301-2750320 None:intergenic 40.0%
!! AAAGAGCTTGCTGATTTGGA+AGG + Chr4:2750385-2750404 MsG0480018283.01.T02:CDS 40.0%
!! AGATGACATGAATTTTGGGG+TGG + Chr4:2750555-2750574 MsG0480018283.01.T02:CDS 40.0%
!! ATGTGTTACTTCTATGGGAG+AGG - Chr4:2748935-2748954 None:intergenic 40.0%
!! CTACCACAGAAACTTGCTAT+TGG + Chr4:2752022-2752041 MsG0480018283.01.T02:intron 40.0%
!! CTGGGATGTGTTACTTCTAT+GGG - Chr4:2748940-2748959 None:intergenic 40.0%
!! GATTTCCCCTTTTTCTAAGG+AGG - Chr4:2753114-2753133 None:intergenic 40.0%
!! GGTCTGATGTTGATGATCTA+TGG + Chr4:2750443-2750462 MsG0480018283.01.T02:CDS 40.0%
!! TCTGGGATGTGTTACTTCTA+TGG - Chr4:2748941-2748960 None:intergenic 40.0%
!! TGCTGATTTGGAAGGAATGT+TGG + Chr4:2750393-2750412 MsG0480018283.01.T02:CDS 40.0%
!! TGTGTTACTTCTATGGGAGA+GGG - Chr4:2748934-2748953 None:intergenic 40.0%
!!! CAAGGAAGGCTTTTTTGAAG+AGG + Chr4:2751669-2751688 MsG0480018283.01.T02:CDS 40.0%
AAAACTGGCATGCCAGAAAG+AGG + Chr4:2749316-2749335 MsG0480018283.01.T02:CDS 45.0%
AACATGTGTTCTCAGTCTCC+TGG - Chr4:2748488-2748507 None:intergenic 45.0%
AACTGCCTCACAAAATCCCT+CGG - Chr4:2752861-2752880 None:intergenic 45.0%
AAGAGAATTCCTCCGGTGAA+TGG + Chr4:2752617-2752636 MsG0480018283.01.T02:CDS 45.0%
AAGCATGTATCCACACCCAA+AGG - Chr4:2749268-2749287 None:intergenic 45.0%
AATGGAACTGTAGCAAGGAC+AGG + Chr4:2751460-2751479 MsG0480018283.01.T02:CDS 45.0%
ACATAAGCATGATTGGGAGG+TGG + Chr4:2749541-2749560 MsG0480018283.01.T02:intron 45.0%
AGACTCTTGACCTTTCAGCT+AGG + Chr4:2751368-2751387 MsG0480018283.01.T02:CDS 45.0%
AGAGAATTCCTCCGGTGAAT+GGG + Chr4:2752618-2752637 MsG0480018283.01.T02:CDS 45.0%
AGCTGCCGAATGTGATCAAA+AGG + Chr4:2751246-2751265 MsG0480018283.01.T02:CDS 45.0%
ATTCAGAGGGAAAGGTTCGA+GGG + Chr4:2748711-2748730 MsG0480018283.01.T02:intron 45.0%
CATAAGCATGATTGGGAGGT+GGG + Chr4:2749542-2749561 MsG0480018283.01.T02:intron 45.0%
CATCTTCAGCCATTCAAGGA+AGG + Chr4:2751655-2751674 MsG0480018283.01.T02:CDS 45.0%
CCAACATAAGCATGATTGGG+AGG + Chr4:2749538-2749557 MsG0480018283.01.T02:intron 45.0%
CCGGGATTGTGTTTATTCAG+AGG + Chr4:2748697-2748716 MsG0480018283.01.T02:intron 45.0%
CCTCCCAATCATGCTTATGT+TGG - Chr4:2749541-2749560 None:intergenic 45.0%
CGAGGGTCAACTTGCAAAAT+TGG + Chr4:2749985-2750004 MsG0480018283.01.T02:CDS 45.0%
CTCAAGAGTAACCCTGAGAA+TGG + Chr4:2748439-2748458 MsG0480018283.01.T02:five_prime_UTR 45.0%
CTCATCTAAGAGAGGAACAG+TGG + Chr4:2752888-2752907 MsG0480018283.01.T02:CDS 45.0%
GAAGAGAGTGAACCTCTTTC+TGG - Chr4:2749331-2749350 None:intergenic 45.0%
GAAGTGCAAAAGCCATTCTC+AGG - Chr4:2748454-2748473 None:intergenic 45.0%
GACTCTTGACCTTTCAGCTA+GGG + Chr4:2751369-2751388 MsG0480018283.01.T02:CDS 45.0%
GATCAGTTGTTCTTCTCTCG+AGG + Chr4:2749967-2749986 MsG0480018283.01.T02:CDS 45.0%
GATTCCACTCGTCTCTAATG+GGG + Chr4:2750998-2751017 MsG0480018283.01.T02:CDS 45.0%
GGAAGACAGTGTCCTTTCTA+TGG + Chr4:2750498-2750517 MsG0480018283.01.T02:CDS 45.0%
GGACGCCACATATAAGTTAC+AGG - Chr4:2749134-2749153 None:intergenic 45.0%
GGAGACTGAGAACACATGTT+TGG + Chr4:2748488-2748507 MsG0480018283.01.T02:five_prime_UTR 45.0%
GGATTCCACTCGTCTCTAAT+GGG + Chr4:2750997-2751016 MsG0480018283.01.T02:CDS 45.0%
TAACAAAGCCAATAGGCCAC+CGG - Chr4:2752684-2752703 None:intergenic 45.0%
TACTCTGCCGTTCAATTGGA+GGG + Chr4:2748784-2748803 MsG0480018283.01.T02:five_prime_UTR 45.0%
TATCTGCATTCCCCATTCAC+CGG - Chr4:2752632-2752651 None:intergenic 45.0%
TATTCAGAGGGAAAGGTTCG+AGG + Chr4:2748710-2748729 MsG0480018283.01.T02:intron 45.0%
TCAAGATTTCCCGGATTGCA+AGG + Chr4:2751198-2751217 MsG0480018283.01.T02:CDS 45.0%
TCCTTATGCAGCAGATGGAA+AGG + Chr4:2751537-2751556 MsG0480018283.01.T02:CDS 45.0%
TCTAAGAGAGGAACAGTGGA+TGG + Chr4:2752892-2752911 MsG0480018283.01.T02:CDS 45.0%
TCTAATGGGGCACATGCAAT+AGG + Chr4:2751011-2751030 MsG0480018283.01.T02:CDS 45.0%
TGCAATCCGGGAAATCTTGA+GGG - Chr4:2751198-2751217 None:intergenic 45.0%
TGCAATGTCATTGCAGCAAG+AGG + Chr4:2752828-2752847 MsG0480018283.01.T02:intron 45.0%
TGCTACAAATAGGGCCATGT+TGG + Chr4:2753080-2753099 MsG0480018283.01.T02:three_prime_UTR 45.0%
TGGATTCCACTCGTCTCTAA+TGG + Chr4:2750996-2751015 MsG0480018283.01.T02:CDS 45.0%
TGTGCCCCTTTCTTGCAATT+TGG - Chr4:2748318-2748337 None:intergenic 45.0%
TTACTCTGCCGTTCAATTGG+AGG + Chr4:2748783-2748802 MsG0480018283.01.T02:five_prime_UTR 45.0%
TTGCAATCCGGGAAATCTTG+AGG - Chr4:2751199-2751218 None:intergenic 45.0%
TTGTGAACAATACGCCATGG+AGG - Chr4:2751319-2751338 None:intergenic 45.0%
TTTCTTCGACGAACATGTCG+AGG - Chr4:2748415-2748434 None:intergenic 45.0%
! AAAGCTCAAACAAGGAGTGC+TGG + Chr4:2748744-2748763 MsG0480018283.01.T02:five_prime_UTR 45.0%
! AAATTGCAAGAAAGGGGCAC+AGG + Chr4:2748317-2748336 MsG0480018283.01.T02:five_prime_UTR 45.0%
! AGATCTTGAGCACTGCACTT+TGG - Chr4:2750590-2750609 None:intergenic 45.0%
! CATGCTTCTGCCTTTGAAGA+AGG + Chr4:2749281-2749300 MsG0480018283.01.T02:CDS 45.0%
! CTTTTAGACACCTTTGGGTG+TGG + Chr4:2749255-2749274 MsG0480018283.01.T02:CDS 45.0%
! GAAGGCTTTGACCCAACTTA+AGG - Chr4:2750976-2750995 None:intergenic 45.0%
! GAGAATGGCTTTTGCACTTC+TGG + Chr4:2748454-2748473 MsG0480018283.01.T02:five_prime_UTR 45.0%
! GATTTTCCATGACCAAGCTG+TGG + Chr4:2748521-2748540 MsG0480018283.01.T02:five_prime_UTR 45.0%
! GTTCTTTCTGGCACAACCTA+TGG + Chr4:2748976-2748995 MsG0480018283.01.T02:five_prime_UTR 45.0%
! TAACAGCAGTCGACCAGTTT+TGG - Chr4:2751515-2751534 None:intergenic 45.0%
! TAAGTTGGGTCAAAGCCTTC+TGG + Chr4:2750976-2750995 MsG0480018283.01.T02:CDS 45.0%
! TTTTCCATGACCAAGCTGTG+GGG + Chr4:2748523-2748542 MsG0480018283.01.T02:five_prime_UTR 45.0%
!! CTGCAAAGAGCTTGCTGATT+TGG + Chr4:2750381-2750400 MsG0480018283.01.T02:CDS 45.0%
!!! TTCGGCACATTGATTTTGCG+AGG - Chr4:2748178-2748197 None:intergenic 45.0%
AGAGACGAGTGGAATCCAGA+AGG - Chr4:2750994-2751013 None:intergenic 50.0%
ATGAGTACGCCTTGCAATCC+GGG - Chr4:2751210-2751229 None:intergenic 50.0%
CAAGGCGTACTCATGCTTCA+TGG + Chr4:2751216-2751235 MsG0480018283.01.T02:CDS 50.0%
CACGGTGCTTCTCCATAGAA+AGG - Chr4:2750513-2750532 None:intergenic 50.0%
CATGAGTACGCCTTGCAATC+CGG - Chr4:2751211-2751230 None:intergenic 50.0%
CTCTGGACCCTCCAATTGAA+CGG - Chr4:2748794-2748813 None:intergenic 50.0%
GAAAGGACACTGTCTTCCAC+TGG - Chr4:2750496-2750515 None:intergenic 50.0%
GAGAATTCCTCCGGTGAATG+GGG + Chr4:2752619-2752638 MsG0480018283.01.T02:CDS 50.0%
GCACGGGATTCTGCAAACTT+CGG - Chr4:2748196-2748215 None:intergenic 50.0%
GCCTTTCCATCTGCTGCATA+AGG - Chr4:2751541-2751560 None:intergenic 50.0%
GCGGACGTAACAAAGCCAAT+AGG - Chr4:2752691-2752710 None:intergenic 50.0%
GGAAAAATGGTATCCCCGTC+TGG - Chr4:2751177-2751196 None:intergenic 50.0%
GGCCCAATAGCAAGTTTCTG+TGG - Chr4:2752028-2752047 None:intergenic 50.0%
GTTACGTCCGCTTGTGTTCA+AGG + Chr4:2752700-2752719 MsG0480018283.01.T02:CDS 50.0%
TACCTTCCTTGAAGACCCAG+AGG - Chr4:2748559-2748578 None:intergenic 50.0%
TAGGTTTGCGAGAGAAGCAG+TGG + Chr4:2751030-2751049 MsG0480018283.01.T02:CDS 50.0%
TCTGGGTCTTCAAGGAAGGT+AGG + Chr4:2748558-2748577 MsG0480018283.01.T02:intron 50.0%
TGACAGGGCTGCTAGTTGAT+TGG + Chr4:2752354-2752373 MsG0480018283.01.T02:intron 50.0%
TTCCTCTGGGTCTTCAAGGA+AGG + Chr4:2748554-2748573 MsG0480018283.01.T02:five_prime_UTR 50.0%
TTCCTTGAAGACCCAGAGGA+AGG - Chr4:2748555-2748574 None:intergenic 50.0%
! AACGCAAAAGCACGCACAAG+AGG - Chr4:2752049-2752068 None:intergenic 50.0%
! AGTTGGAGCACCAGTTTCTC+TGG + Chr4:2749100-2749119 MsG0480018283.01.T02:five_prime_UTR 50.0%
! GGCTCCGCCTCTGAAAATAA+TGG + Chr4:2748833-2748852 MsG0480018283.01.T02:intron 50.0%
! GGCTTTTGCACTTCTGGTGA+TGG + Chr4:2748460-2748479 MsG0480018283.01.T02:five_prime_UTR 50.0%
!! CAGTTGGTAGAGAGTCTCAC+CGG + Chr4:2752662-2752681 MsG0480018283.01.T02:CDS 50.0%
!! CGTTGAAGGCTTTGAAGCTC+AGG - Chr4:2748220-2748239 None:intergenic 50.0%
!! GCTATGGGTGCTGAACCTTT+AGG - Chr4:2748148-2748167 None:intergenic 50.0%
!!! GGCACATTGATTTTGCGAGG+TGG - Chr4:2748175-2748194 None:intergenic 50.0%
AAGAGGCTTGAAGCCTCCAG+TGG + Chr4:2750477-2750496 MsG0480018283.01.T02:CDS 55.0%
AAGGTGGTAACCCCACAGCT+TGG - Chr4:2748536-2748555 None:intergenic 55.0%
AATACGCCATGGAGGCAGGA+TGG - Chr4:2751311-2751330 None:intergenic 55.0%
AGGACACTGTCTTCCACTGG+AGG - Chr4:2750493-2750512 None:intergenic 55.0%
ATACGCCATGGAGGCAGGAT+GGG - Chr4:2751310-2751329 None:intergenic 55.0%
CACCTTCCTCTGGGTCTTCA+AGG + Chr4:2748550-2748569 MsG0480018283.01.T02:five_prime_UTR 55.0%
CGTCCGCTTGTGTTCAAGGA+AGG + Chr4:2752704-2752723 MsG0480018283.01.T02:CDS 55.0%
CGTTCAATTGGAGGGTCCAG+AGG + Chr4:2748792-2748811 MsG0480018283.01.T02:five_prime_UTR 55.0%
CTTGAAGACCCAGAGGAAGG+TGG - Chr4:2748552-2748571 None:intergenic 55.0%
GAACAATACGCCATGGAGGC+AGG - Chr4:2751315-2751334 None:intergenic 55.0%
GGAGCGATTGCCAGAGAAAC+TGG - Chr4:2749113-2749132 None:intergenic 55.0%
GTAACCCCACAGCTTGGTCA+TGG - Chr4:2748530-2748549 None:intergenic 55.0%
TGGGGTTACCACCTTCCTCT+GGG + Chr4:2748541-2748560 MsG0480018283.01.T02:five_prime_UTR 55.0%
TGTGCCCCATTAGAGACGAG+TGG - Chr4:2751005-2751024 None:intergenic 55.0%
TTCGCTCCTCCTCTGCTTCA+CGG - Chr4:2752924-2752943 None:intergenic 55.0%
TTGGTAGAGAGTCTCACCGG+TGG + Chr4:2752665-2752684 MsG0480018283.01.T02:CDS 55.0%
! GAAAGGGGCACAGGAGAAAG+AGG + Chr4:2748326-2748345 MsG0480018283.01.T02:five_prime_UTR 55.0%
! TGCAGCCGAGGGATTTTGTG+AGG + Chr4:2752853-2752872 MsG0480018283.01.T02:CDS 55.0%
!! GCACTTCTGGTGATGGAACC+AGG + Chr4:2748467-2748486 MsG0480018283.01.T02:five_prime_UTR 55.0%
!! GCTTTGAAGCTCAGGAGCAC+GGG - Chr4:2748212-2748231 None:intergenic 55.0%
!! GGCTTTGAAGCTCAGGAGCA+CGG - Chr4:2748213-2748232 None:intergenic 55.0%
AGATGCCCGTGAAGCAGAGG+AGG + Chr4:2752915-2752934 MsG0480018283.01.T02:CDS 60.0%
AGCAAGAGGCTTGCAGCCGA+GGG + Chr4:2752842-2752861 MsG0480018283.01.T02:intron 60.0%
CTGCATTCCCCATTCACCGG+AGG - Chr4:2752629-2752648 None:intergenic 60.0%
GAGTCTCACCGGTGGCCTAT+TGG + Chr4:2752673-2752692 MsG0480018283.01.T02:CDS 60.0%
GAGTTCCCATCCTGCCTCCA+TGG + Chr4:2751302-2751321 MsG0480018283.01.T02:CDS 60.0%
GTGGGGTTACCACCTTCCTC+TGG + Chr4:2748540-2748559 MsG0480018283.01.T02:five_prime_UTR 60.0%
TCGCTCCTCCTCTGCTTCAC+GGG - Chr4:2752923-2752942 None:intergenic 60.0%
TGGAGATGCCCGTGAAGCAG+AGG + Chr4:2752912-2752931 MsG0480018283.01.T02:CDS 60.0%
TTGCGAGGTGGCGCTGCTAT+GGG - Chr4:2748163-2748182 None:intergenic 60.0%
TTTGCGAGGTGGCGCTGCTA+TGG - Chr4:2748164-2748183 None:intergenic 60.0%
!! GGAGAAGCACCGTGAACGCA+TGG + Chr4:2750519-2750538 MsG0480018283.01.T02:CDS 60.0%
CAGCAAGAGGCTTGCAGCCG+AGG + Chr4:2752841-2752860 MsG0480018283.01.T02:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 2748110 2753241 2748110 ID=MsG0480018283.01;Name=MsG0480018283.01
Chr4 mRNA 2748110 2753241 2748110 ID=MsG0480018283.01.T01;Parent=MsG0480018283.01;Name=MsG0480018283.01.T01;_AED=0.38;_eAED=0.38;_QI=11|1|1|1|0.88|1|10|199|856
Chr4 exon 2749092 2749337 2749092 ID=MsG0480018283.01.T01:exon:854;Parent=MsG0480018283.01.T01
Chr4 five_prime_UTR 2748110 2748120 2748110 ID=MsG0480018283.01.T01:five_prime_utr;Parent=MsG0480018283.01.T01
Chr4 CDS 2748121 2748575 2748121 ID=MsG0480018283.01.T01:cds;Parent=MsG0480018283.01.T01
Chr4 CDS 2748717 2748813 2748717 ID=MsG0480018283.01.T01:cds;Parent=MsG0480018283.01.T01
Chr4 CDS 2748895 2749008 2748895 ID=MsG0480018283.01.T01:cds;Parent=MsG0480018283.01.T01
Chr4 CDS 2749092 2749337 2749092 ID=MsG0480018283.01.T01:cds;Parent=MsG0480018283.01.T01
Chr4 CDS 2749947 2750065 2749947 ID=MsG0480018283.01.T01:cds;Parent=MsG0480018283.01.T01
Chr4 CDS 2750159 2750656 2750159 ID=MsG0480018283.01.T01:cds;Parent=MsG0480018283.01.T01
Chr4 CDS 2750956 2751064 2750956 ID=MsG0480018283.01.T01:cds;Parent=MsG0480018283.01.T01
Chr4 CDS 2751178 2751743 2751178 ID=MsG0480018283.01.T01:cds;Parent=MsG0480018283.01.T01
Chr4 CDS 2752558 2752725 2752558 ID=MsG0480018283.01.T01:cds;Parent=MsG0480018283.01.T01
Chr4 CDS 2752844 2753042 2752844 ID=MsG0480018283.01.T01:cds;Parent=MsG0480018283.01.T01
Chr4 three_prime_UTR 2753043 2753241 2753043 ID=MsG0480018283.01.T01:three_prime_utr;Parent=MsG0480018283.01.T01
Chr4 mRNA 2748110 2753241 2748110 ID=MsG0480018283.01.T02;Parent=MsG0480018283.01;Name=MsG0480018283.01.T02;_AED=0.37;_eAED=0.37;_QI=811|1|1|1|0.87|0.88|9|199|617
Chr4 exon 2748895 2749337 2748895 ID=MsG0480018283.01.T02:exon:861;Parent=MsG0480018283.01.T02
Chr4 five_prime_UTR 2748110 2748575 2748110 ID=MsG0480018283.01.T02:five_prime_utr;Parent=MsG0480018283.01.T02
Chr4 five_prime_UTR 2748717 2748813 2748717 ID=MsG0480018283.01.T02:five_prime_utr;Parent=MsG0480018283.01.T02
Chr4 five_prime_UTR 2748895 2749142 2748895 ID=MsG0480018283.01.T02:five_prime_utr;Parent=MsG0480018283.01.T02
Chr4 CDS 2749143 2749337 2749143 ID=MsG0480018283.01.T02:cds;Parent=MsG0480018283.01.T02
Chr4 CDS 2749947 2750065 2749947 ID=MsG0480018283.01.T02:cds;Parent=MsG0480018283.01.T02
Chr4 CDS 2750159 2750656 2750159 ID=MsG0480018283.01.T02:cds;Parent=MsG0480018283.01.T02
Chr4 CDS 2750956 2751064 2750956 ID=MsG0480018283.01.T02:cds;Parent=MsG0480018283.01.T02
Chr4 CDS 2751178 2751743 2751178 ID=MsG0480018283.01.T02:cds;Parent=MsG0480018283.01.T02
Chr4 CDS 2752558 2752725 2752558 ID=MsG0480018283.01.T02:cds;Parent=MsG0480018283.01.T02
Chr4 CDS 2752844 2753042 2752844 ID=MsG0480018283.01.T02:cds;Parent=MsG0480018283.01.T02
Chr4 three_prime_UTR 2753043 2753241 2753043 ID=MsG0480018283.01.T02:three_prime_utr;Parent=MsG0480018283.01.T02
Chr4 mRNA 2748110 2749355 2748110 ID=MsG0480018283.01.T03;Parent=MsG0480018283.01;Name=MsG0480018283.01.T03;_AED=0.46;_eAED=0.47;_QI=11|1|0.75|1|1|1|4|0|309
Chr4 exon 2749092 2749355 2749092 ID=MsG0480018283.01.T03:exon:862;Parent=MsG0480018283.01.T03
Chr4 five_prime_UTR 2748110 2748120 2748110 ID=MsG0480018283.01.T03:five_prime_utr;Parent=MsG0480018283.01.T03
Chr4 CDS 2748121 2748575 2748121 ID=MsG0480018283.01.T03:cds;Parent=MsG0480018283.01.T03
Chr4 CDS 2748717 2748813 2748717 ID=MsG0480018283.01.T03:cds;Parent=MsG0480018283.01.T03
Chr4 CDS 2748895 2749008 2748895 ID=MsG0480018283.01.T03:cds;Parent=MsG0480018283.01.T03
Chr4 CDS 2749092 2749355 2749092 ID=MsG0480018283.01.T03:cds;Parent=MsG0480018283.01.T03
Gene Sequence

>MsG0480018283.01.T03

ATGGTTACTGACGTGACTAAAAAGCCTAAAGGTTCAGCACCCATAGCAGCGCCACCTCGCAAAATCAATGTGCCGAAGTTTGCAGAATCCCGTGCTCCTGAGCTTCAAAGCCTTCAACGTATCGTTGAAAATAGATTAAGCAATGATTATAAGTCTCAAAGGAACAAGAGAAGAAGAACAACGTCATTTAATGACCAAATTGCAAGAAAGGGGCACAGGAGAAAGAGGCAAAAACTTGGAAAAGTTGATAAAAATGCTGAATCAGTTTTGAAGGACAATATAACACAGCTTCCTCGACATGTTCGTCGAAGAAATGAACTCAAGAGTAACCCTGAGAATGGCTTTTGCACTTCTGGTGATGGAACCAGGAGACTGAGAACACATGTTTGGCTTGCAAAGCGATTTTCCATGACCAAGCTGTGGGGTTACCACCTTCCTCTGGGTCTTCAAGGAAGAGGGAAAGGTTCGAGGGCGTTGTTGAGAAAGCTCAAACAAGGAGTGCTGGCACACGATGCAAGCTATTACTCTGCCGTTCAATTGGAGGGTCCAGAGGATTCGTTACTTTCAATATTAAGAATGGTACTTGTGCCCTCTCCCATAGAAGTAACACATCCCAGAAATCACGATGATTCTGTTCTTTCTGGCACAACCTATGGAACATCAATGCTTCATCAAGTTGGAGCACCAGTTTCTCTGGCAATCGCTCCTGTAACTTATATGTGGCGTCCAACTTTCCAAGAAAATGTCACAGACCTAGGTGTTAGCGATGAAAAAATTATTCCCGATGTTGATTTATGTGACAAATCAGAAAGAATGGAGTGTAGTTGTTCTTTTAGACACCTTTGGGTGTGGATACATGCTTCTGCCTTTGAAGAAGGATATGCTAATCTAAAACTGGCATGCCAGAAAGAGGTTCACTCTCTTCTTTAA

>MsG0480018283.01.T01

ATGGTTACTGACGTGACTAAAAAGCCTAAAGGTTCAGCACCCATAGCAGCGCCACCTCGCAAAATCAATGTGCCGAAGTTTGCAGAATCCCGTGCTCCTGAGCTTCAAAGCCTTCAACGTATCGTTGAAAATAGATTAAGCAATGATTATAAGTCTCAAAGGAACAAGAGAAGAAGAACAACGTCATTTAATGACCAAATTGCAAGAAAGGGGCACAGGAGAAAGAGGCAAAAACTTGGAAAAGTTGATAAAAATGCTGAATCAGTTTTGAAGGACAATATAACACAGCTTCCTCGACATGTTCGTCGAAGAAATGAACTCAAGAGTAACCCTGAGAATGGCTTTTGCACTTCTGGTGATGGAACCAGGAGACTGAGAACACATGTTTGGCTTGCAAAGCGATTTTCCATGACCAAGCTGTGGGGTTACCACCTTCCTCTGGGTCTTCAAGGAAGAGGGAAAGGTTCGAGGGCGTTGTTGAGAAAGCTCAAACAAGGAGTGCTGGCACACGATGCAAGCTATTACTCTGCCGTTCAATTGGAGGGTCCAGAGGATTCGTTACTTTCAATATTAAGAATGGTACTTGTGCCCTCTCCCATAGAAGTAACACATCCCAGAAATCACGATGATTCTGTTCTTTCTGGCACAACCTATGGAACATCAATGCTTCATCAAGTTGGAGCACCAGTTTCTCTGGCAATCGCTCCTGTAACTTATATGTGGCGTCCAACTTTCCAAGAAAATGTCACAGACCTAGGTGTTAGCGATGAAAAAATTATTCCCGATGTTGATTTATGTGACAAATCAGAAAGAATGGAGTGTAGTTGTTCTTTTAGACACCTTTGGGTGTGGATACATGCTTCTGCCTTTGAAGAAGGATATGCTAATCTAAAACTGGCATGCCAGAAAGAGATGGAAAAGAGAGACATCTCGATCAGTTGTTCTTCTCTCGAGGGTCAACTTGCAAAATTGGAATTAATTGGATCAGGGACATTTCAACTTCTTCAGAAGATATTGCATCCTGTTAGAAGTATTTCAGAAAATCATTGGCAGTTAAAGAAACACGTTACTACAGAAGAAAACCATGTTTCTCAAAATACAGAGTCTTCCATACTGAAAAATGAGGAGGATTTTTCTTGTCATGCAATGTTATCTCTTACTGTTAAGGATCCTCGGGATTTACCTGTGAAAAAAACTGTTGTTCCAATAGAGCCAATTTCAACTAAGGTTCTAAGTGATGCACAAGAAACTAGCTGCAAAGAGCTTGCTGATTTGGAAGGAATGTTGGAAAAGAATAAAGATTTTGGAGACAATCGGTCTGATGTTGATGATCTATGGTATGCTACAACAAGAGGCTTGAAGCCTCCAGTGGAAGACAGTGTCCTTTCTATGGAGAAGCACCGTGAACGCATGGTTAAATTCTGCCTAGATGACATGAATTTTGGGGTGGCGAACTCTTCCAAAGTGCAGTGCTCAAGATCTTGCCCTATTCTGCTGTTAAAAAATGATATGAAGGAATTGACCATGGGATGGTCTATTATACTTCCCTTAAGTTGGGTCAAAGCCTTCTGGATTCCACTCGTCTCTAATGGGGCACATGCAATAGGTTTGCGAGAGAAGCAGTGGATTGCATCTGATACGGGGATACCATTTTTCCCTCAAGATTTCCCGGATTGCAAGGCGTACTCATGCTTCATGGCTGCTAAAGCTGCCGAATGTGATCAAAAGGAAGAACTTCGTCCTCCTTCTGTAAGAAATTTGAGAGTTCCCATCCTGCCTCCATGGCGTATTGTTCACAATACTTTCAACATAAAGATTAGCAATATGGAGACTCTTGACCTTTCAGCTAGGGAAGATTTGACCAATGCTAATTCCTTGTCCAACTCTAAAATTTCAAATTTCGACTCTGAGAATGCATTTAATGGAACTGTAGCAAGGACAGGTTGTATGCTGACTACTTTACTCGACGAAACCAAAACTGGTCGACTGCTGTTATTTCCTTATGCAGCAGATGGAAAGGCCAGAATCTCTAAGTTTATTAAGGGAGAAATAATGCTTGATACAAGGCATAAAAGTTCTATCATTTATGACCGTAAGCTATGTTTTATAAGAGTTCATCTTCAGCCATTCAAGGAAGGCTTTTTTGAAGAGGGTGCAGTTATTTGTGCGCCACATCCTTCTGATATATCTTTATGGACTTTAAGTTCAGTGAAAAGTGAAGTGGGACTTAAACTGTCTGAGTCTGCTATGCGATCATATTTCAAAGAGAATTCCTCCGGTGAATGGGGAATGCAGATACCAGATGATTCAGTTGGTAGAGAGTCTCACCGGTGGCCTATTGGCTTTGTTACGTCCGCTTGTGTTCAAGGAAGCAAGAGGCTTGCAGCCGAGGGATTTTGTGAGGCAGTTTTACTATCTCATCTAAGAGAGGAACAGTGGATGGAGATGCCCGTGAAGCAGAGGAGGAGCGAAATATACGTACTTGTCAGGAATTTAAGATCTGTTGCTTATAGGCTAGCTCTTGCTTCTATAGTCCTAGAATATCAGGAAAATGACACTGAGTTCTTGTAA

>MsG0480018283.01.T02

ATGTGGCGTCCAACTTTCCAAGAAAATGTCACAGACCTAGGTGTTAGCGATGAAAAAATTATTCCCGATGTTGATTTATGTGACAAATCAGAAAGAATGGAGTGTAGTTGTTCTTTTAGACACCTTTGGGTGTGGATACATGCTTCTGCCTTTGAAGAAGGATATGCTAATCTAAAACTGGCATGCCAGAAAGAGATGGAAAAGAGAGACATCTCGATCAGTTGTTCTTCTCTCGAGGGTCAACTTGCAAAATTGGAATTAATTGGATCAGGGACATTTCAACTTCTTCAGAAGATATTGCATCCTGTTAGAAGTATTTCAGAAAATCATTGGCAGTTAAAGAAACACGTTACTACAGAAGAAAACCATGTTTCTCAAAATACAGAGTCTTCCATACTGAAAAATGAGGAGGATTTTTCTTGTCATGCAATGTTATCTCTTACTGTTAAGGATCCTCGGGATTTACCTGTGAAAAAAACTGTTGTTCCAATAGAGCCAATTTCAACTAAGGTTCTAAGTGATGCACAAGAAACTAGCTGCAAAGAGCTTGCTGATTTGGAAGGAATGTTGGAAAAGAATAAAGATTTTGGAGACAATCGGTCTGATGTTGATGATCTATGGTATGCTACAACAAGAGGCTTGAAGCCTCCAGTGGAAGACAGTGTCCTTTCTATGGAGAAGCACCGTGAACGCATGGTTAAATTCTGCCTAGATGACATGAATTTTGGGGTGGCGAACTCTTCCAAAGTGCAGTGCTCAAGATCTTGCCCTATTCTGCTGTTAAAAAATGATATGAAGGAATTGACCATGGGATGGTCTATTATACTTCCCTTAAGTTGGGTCAAAGCCTTCTGGATTCCACTCGTCTCTAATGGGGCACATGCAATAGGTTTGCGAGAGAAGCAGTGGATTGCATCTGATACGGGGATACCATTTTTCCCTCAAGATTTCCCGGATTGCAAGGCGTACTCATGCTTCATGGCTGCTAAAGCTGCCGAATGTGATCAAAAGGAAGAACTTCGTCCTCCTTCTGTAAGAAATTTGAGAGTTCCCATCCTGCCTCCATGGCGTATTGTTCACAATACTTTCAACATAAAGATTAGCAATATGGAGACTCTTGACCTTTCAGCTAGGGAAGATTTGACCAATGCTAATTCCTTGTCCAACTCTAAAATTTCAAATTTCGACTCTGAGAATGCATTTAATGGAACTGTAGCAAGGACAGGTTGTATGCTGACTACTTTACTCGACGAAACCAAAACTGGTCGACTGCTGTTATTTCCTTATGCAGCAGATGGAAAGGCCAGAATCTCTAAGTTTATTAAGGGAGAAATAATGCTTGATACAAGGCATAAAAGTTCTATCATTTATGACCGTAAGCTATGTTTTATAAGAGTTCATCTTCAGCCATTCAAGGAAGGCTTTTTTGAAGAGGGTGCAGTTATTTGTGCGCCACATCCTTCTGATATATCTTTATGGACTTTAAGTTCAGTGAAAAGTGAAGTGGGACTTAAACTGTCTGAGTCTGCTATGCGATCATATTTCAAAGAGAATTCCTCCGGTGAATGGGGAATGCAGATACCAGATGATTCAGTTGGTAGAGAGTCTCACCGGTGGCCTATTGGCTTTGTTACGTCCGCTTGTGTTCAAGGAAGCAAGAGGCTTGCAGCCGAGGGATTTTGTGAGGCAGTTTTACTATCTCATCTAAGAGAGGAACAGTGGATGGAGATGCCCGTGAAGCAGAGGAGGAGCGAAATATACGTACTTGTCAGGAATTTAAGATCTGTTGCTTATAGGCTAGCTCTTGCTTCTATAGTCCTAGAATATCAGGAAAATGACACTGAGTTCTTGTAA
Protein sequence

>MsG0480018283.01.T03

MVTDVTKKPKGSAPIAAPPRKINVPKFAESRAPELQSLQRIVENRLSNDYKSQRNKRRRTTSFNDQIARKGHRRKRQKLGKVDKNAESVLKDNITQLPRHVRRRNELKSNPENGFCTSGDGTRRLRTHVWLAKRFSMTKLWGYHLPLGLQGRGKGSRALLRKLKQGVLAHDASYYSAVQLEGPEDSLLSILRMVLVPSPIEVTHPRNHDDSVLSGTTYGTSMLHQVGAPVSLAIAPVTYMWRPTFQENVTDLGVSDEKIIPDVDLCDKSERMECSCSFRHLWVWIHASAFEEGYANLKLACQKEVHSLL*

>MsG0480018283.01.T01

MVTDVTKKPKGSAPIAAPPRKINVPKFAESRAPELQSLQRIVENRLSNDYKSQRNKRRRTTSFNDQIARKGHRRKRQKLGKVDKNAESVLKDNITQLPRHVRRRNELKSNPENGFCTSGDGTRRLRTHVWLAKRFSMTKLWGYHLPLGLQGRGKGSRALLRKLKQGVLAHDASYYSAVQLEGPEDSLLSILRMVLVPSPIEVTHPRNHDDSVLSGTTYGTSMLHQVGAPVSLAIAPVTYMWRPTFQENVTDLGVSDEKIIPDVDLCDKSERMECSCSFRHLWVWIHASAFEEGYANLKLACQKEMEKRDISISCSSLEGQLAKLELIGSGTFQLLQKILHPVRSISENHWQLKKHVTTEENHVSQNTESSILKNEEDFSCHAMLSLTVKDPRDLPVKKTVVPIEPISTKVLSDAQETSCKELADLEGMLEKNKDFGDNRSDVDDLWYATTRGLKPPVEDSVLSMEKHRERMVKFCLDDMNFGVANSSKVQCSRSCPILLLKNDMKELTMGWSIILPLSWVKAFWIPLVSNGAHAIGLREKQWIASDTGIPFFPQDFPDCKAYSCFMAAKAAECDQKEELRPPSVRNLRVPILPPWRIVHNTFNIKISNMETLDLSAREDLTNANSLSNSKISNFDSENAFNGTVARTGCMLTTLLDETKTGRLLLFPYAADGKARISKFIKGEIMLDTRHKSSIIYDRKLCFIRVHLQPFKEGFFEEGAVICAPHPSDISLWTLSSVKSEVGLKLSESAMRSYFKENSSGEWGMQIPDDSVGRESHRWPIGFVTSACVQGSKRLAAEGFCEAVLLSHLREEQWMEMPVKQRRSEIYVLVRNLRSVAYRLALASIVLEYQENDTEFL*

>MsG0480018283.01.T02

MWRPTFQENVTDLGVSDEKIIPDVDLCDKSERMECSCSFRHLWVWIHASAFEEGYANLKLACQKEMEKRDISISCSSLEGQLAKLELIGSGTFQLLQKILHPVRSISENHWQLKKHVTTEENHVSQNTESSILKNEEDFSCHAMLSLTVKDPRDLPVKKTVVPIEPISTKVLSDAQETSCKELADLEGMLEKNKDFGDNRSDVDDLWYATTRGLKPPVEDSVLSMEKHRERMVKFCLDDMNFGVANSSKVQCSRSCPILLLKNDMKELTMGWSIILPLSWVKAFWIPLVSNGAHAIGLREKQWIASDTGIPFFPQDFPDCKAYSCFMAAKAAECDQKEELRPPSVRNLRVPILPPWRIVHNTFNIKISNMETLDLSAREDLTNANSLSNSKISNFDSENAFNGTVARTGCMLTTLLDETKTGRLLLFPYAADGKARISKFIKGEIMLDTRHKSSIIYDRKLCFIRVHLQPFKEGFFEEGAVICAPHPSDISLWTLSSVKSEVGLKLSESAMRSYFKENSSGEWGMQIPDDSVGRESHRWPIGFVTSACVQGSKRLAAEGFCEAVLLSHLREEQWMEMPVKQRRSEIYVLVRNLRSVAYRLALASIVLEYQENDTEFL*