AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032157.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032157.01.T01 MTR_4g105450 89.831 118 12 0 122 239 141 258 3.48e-73 224
MsG0680032157.01.T01 MTR_4g105460 58.140 172 58 1 68 239 103 260 7.96e-62 196
MsG0680032157.01.T01 MTR_6g037490 78.652 89 19 0 31 119 5 93 5.49e-42 141
MsG0680032157.01.T01 MTR_6g037500 80.682 88 17 0 1 88 29 116 2.99e-41 144
MsG0680032157.01.T01 MTR_6g037500 77.083 48 11 0 35 82 193 240 1.71e-17 80.9
MsG0680032157.01.T01 MTR_6g037460 54.478 134 42 4 123 256 2 116 8.85e-34 120
MsG0680032157.01.T01 MTR_4g105460 48.305 118 46 2 68 185 103 205 3.24e-25 99.8
MsG0680032157.01.T01 MTR_3g098530 36.000 75 48 0 132 206 149 223 6.17e-12 64.7
MsG0680032157.01.T01 MTR_3g074050 30.108 93 64 1 129 220 58 150 7.03e-11 61.2
MsG0680032157.01.T01 MTR_3g074050 30.108 93 64 1 129 220 125 217 9.78e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032157.01.T01 AT5G63060 63.281 128 46 1 113 239 134 261 1.01e-53 175
MsG0680032157.01.T01 AT5G63060 62.791 129 47 1 113 240 99 227 1.25e-53 174
MsG0680032157.01.T01 AT1G01630 33.333 84 56 0 123 206 123 206 3.04e-11 62.4

Find 69 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTATGTTGTGGCATTTA+AGG 0.127618 6:+35250617 MsG0680032157.01.T01:five_prime_UTR
TCTTAAATACTTGAAATTAT+TGG 0.147869 6:+35254756 MsG0680032157.01.T01:CDS
CTGCTGTGTTTAAGCCATTT+TGG 0.161420 6:+35254969 MsG0680032157.01.T01:CDS
TACTTGATCATTGTTTCTTC+TGG 0.243473 6:-35251801 None:intergenic
TTAAGGAAGGAAATCCAATT+TGG 0.248510 6:+35251762 MsG0680032157.01.T01:CDS
ATATTTGATCTTAGAGGTTT+TGG 0.257189 6:+35254718 MsG0680032157.01.T01:CDS
CTTGCAATATTTGATCTTAG+AGG 0.267024 6:+35254712 MsG0680032157.01.T01:CDS
AGGTCGGTATATAGAGAATT+AGG 0.329499 6:-35251908 None:intergenic
TTCTTCATAAGCCGCCAAAA+TGG 0.332829 6:-35254983 None:intergenic
AATACTTGAGACAATCGATT+TGG 0.336911 6:-35254932 None:intergenic
TGCCTACAACAAAAGATGTT+TGG 0.340526 6:+35250431 MsG0680032157.01.T01:five_prime_UTR
GATGGCCCTTTGGCAAGAAT+TGG 0.350104 6:+35250573 MsG0680032157.01.T01:five_prime_UTR
TCTTGACTGAGCTGAGGAAT+AGG 0.352875 6:-35251833 None:intergenic
TTAATGTTCCCATAGCCTTT+AGG 0.362450 6:+35251969 MsG0680032157.01.T01:CDS
ATTGGATCAGTGCTATTATA+AGG 0.363204 6:+35250591 MsG0680032157.01.T01:five_prime_UTR
TGCCTACAAACGTTAAAGTT+TGG 0.364145 6:-35255417 None:intergenic
GTTAAAATCACATGCTTCTC+AGG 0.368278 6:+35255009 MsG0680032157.01.T01:CDS
GCCTACAACAAAAGATGTTT+GGG 0.371579 6:+35250432 MsG0680032157.01.T01:five_prime_UTR
CACTCTGACGAGTCTCATAC+TGG 0.408888 6:-35257769 None:intergenic
ATGATCGGAAATCAAAGTTA+TGG 0.411748 6:+35250503 MsG0680032157.01.T01:five_prime_UTR
ATAATGAACTGATGGCCCTT+TGG 0.421967 6:+35250563 MsG0680032157.01.T01:five_prime_UTR
AACAACCTGCAGTGCACCTC+TGG 0.424869 6:-35257801 None:intergenic
CTTGACTGAGCTGAGGAATA+GGG 0.426205 6:-35251832 None:intergenic
AGTAAGCTTCCCACTGGAAC+AGG 0.427216 6:+35254609 MsG0680032157.01.T01:intron
ATGTTGTGGCATTTAAGGTT+AGG 0.431068 6:+35250622 MsG0680032157.01.T01:five_prime_UTR
CACAATCTCTTATCTTCTGC+GGG 0.435891 6:-35254634 None:intergenic
ACCTGGCTTCCTAAAGGCTA+TGG 0.454515 6:-35251978 None:intergenic
GGCCATCAGTTCATTATAAG+AGG 0.458436 6:-35250557 None:intergenic
CCCATAGCCTTTAGGAAGCC+AGG 0.462866 6:+35251977 MsG0680032157.01.T01:CDS
GAACTTAAATATTTAAAACT+AGG 0.466915 6:-35250649 None:intergenic
ATTGTCTCAAGTATTATTTG+TGG 0.480852 6:+35254940 MsG0680032157.01.T01:CDS
CTACAAACGTTAAAGTTTGG+TGG 0.490809 6:-35255414 None:intergenic
TCATTACAGGGATCTTTATG+TGG 0.491859 6:-35251725 None:intergenic
TTGATGTCCTCATAAAACTA+AGG 0.492373 6:+35251930 MsG0680032157.01.T01:CDS
ACTTACTCCTTCCATGAGTA+AGG 0.492922 6:+35251628 MsG0680032157.01.T01:exon
TTAAATATTTAAAACTAGGA+TGG 0.504715 6:-35250645 None:intergenic
CAAAATGGCTTAAACACAGC+AGG 0.505889 6:-35254968 None:intergenic
GCATTTAGTAAGCTTCCCAC+TGG 0.517366 6:+35254676 MsG0680032157.01.T01:CDS
TCTCATACTGGATGAGAGCT+TGG 0.522572 6:-35257757 None:intergenic
GACTGCCAGAGGTGCACTGC+AGG 0.523555 6:+35257796 MsG0680032157.01.T01:CDS
TAAGGATCAATCAGAGTTTG+AGG 0.523576 6:+35251646 MsG0680032157.01.T01:CDS
CTGATCCAATTCTTGCCAAA+GGG 0.528191 6:-35250578 None:intergenic
CTCTGATTGATCCTTACTCA+TGG 0.530321 6:-35251639 None:intergenic
GAAAGTCAACCGACTCAGAC+AGG 0.536283 6:+35251869 MsG0680032157.01.T01:CDS
TCTGCGGGGTCCTGTTCCAG+TGG 0.537128 6:-35254619 None:intergenic
CATTTAGTAAGCTTCCCACT+GGG 0.540037 6:+35254677 MsG0680032157.01.T01:CDS
TACCTCTTATAATGAACTGA+TGG 0.550134 6:+35250555 MsG0680032157.01.T01:five_prime_UTR
TATATAGAGAATTAGGATCA+AGG 0.550784 6:-35251901 None:intergenic
TGACCTACCTGGCTTCCTAA+AGG 0.553847 6:-35251984 None:intergenic
CTGCGGGGTCCTGTTCCAGT+GGG 0.555994 6:-35254618 None:intergenic
CCTGGCTTCCTAAAGGCTAT+GGG 0.561345 6:-35251977 None:intergenic
CAGTGCACCTCTGGCAGTCA+CGG 0.563683 6:-35257792 None:intergenic
GTTTCTCTATGATTTATGAT+CGG 0.565797 6:+35250488 MsG0680032157.01.T01:five_prime_UTR
CTCTGCAGAAACTCTCAAGA+AGG 0.569311 6:+35255368 MsG0680032157.01.T01:CDS
CTTATTAATACTATGAAGGT+AGG 0.570994 6:+35250385 None:intergenic
ACTGATCCAATTCTTGCCAA+AGG 0.576233 6:-35250579 None:intergenic
GATTGATCCTTACTCATGGA+AGG 0.576342 6:-35251635 None:intergenic
AGTATTTGCTCTTCCCCAGT+GGG 0.579798 6:-35254691 None:intergenic
CAGAGTGCCGTGACTGCCAG+AGG 0.584517 6:+35257785 MsG0680032157.01.T01:CDS
GAAGGAAATCCAATTTGGAA+AGG 0.585115 6:+35251767 MsG0680032157.01.T01:CDS
TCATATTCTTGACTGAGCTG+AGG 0.591261 6:-35251839 None:intergenic
GCATTGAGTAAGCTTCCCAC+TGG 0.596630 6:+35254603 MsG0680032157.01.T01:intron
ACACAATCTCTTATCTTCTG+CGG 0.614212 6:-35254635 None:intergenic
ATAAGGATGACATTATGTTG+TGG 0.623373 6:+35250608 MsG0680032157.01.T01:five_prime_UTR
AGAGATTTACCTGTCTGAGT+CGG 0.625796 6:-35251878 None:intergenic
AAGTATTTGCTCTTCCCCAG+TGG 0.634171 6:-35254692 None:intergenic
GAATTTAAAACAGAATGACA+TGG 0.651261 6:+35250525 MsG0680032157.01.T01:five_prime_UTR
ATTTAGTAAGCTTCCCACTG+GGG 0.686802 6:+35254678 MsG0680032157.01.T01:CDS
ACAATCTCTTATCTTCTGCG+GGG 0.742035 6:-35254633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAATTATTATATCATTT+AGG + Chr6:35257195-35257214 MsG0680032157.01.T01:intron 10.0%
!! TCAAAAAAAAAAAAATAGAA+CGG - Chr6:35256498-35256517 None:intergenic 10.0%
!! TCAAAAAATAATAGTATTAT+TGG - Chr6:35257645-35257664 None:intergenic 10.0%
!! TTATATTACTCTTAAAATAA+AGG - Chr6:35256650-35256669 None:intergenic 10.0%
!!! AATTAAAAACTTTTGTAAAT+TGG + Chr6:35250920-35250939 MsG0680032157.01.T01:intron 10.0%
!!! AATTAAGTTTTTAAACAATT+CGG - Chr6:35252449-35252430 None:intergenic 10.0%
!!! GAATTTTTTAATAAAATTGT+TGG + Chr6:35250996-35251015 MsG0680032157.01.T01:intron 10.0%
!!! GAATTTTTTAATAAAATTGT+TGG - Chr6:35251015-35250996 None:intergenic 10.0%
!!! TATAAAACTATTTTACAAAA+CGG - Chr6:35256737-35256756 None:intergenic 10.0%
!!! TTCTATTTTTTTTTTTTTGA+AGG + Chr6:35256498-35256517 MsG0680032157.01.T01:intron 10.0%
!! AAATGAAATATAAGCAAAAA+TGG - Chr6:35257558-35257577 None:intergenic 15.0%
!! ATCAAATATATAAAATCATG+AGG - Chr6:35253249-35253268 None:intergenic 15.0%
!! TAACAAAAAAAAACACAAAT+CGG - Chr6:35253889-35253908 None:intergenic 15.0%
!! TCTTAAATACTTGAAATTAT+TGG + Chr6:35254756-35254775 MsG0680032157.01.T01:CDS 15.0%
!! TGAAACAAAAAAAAGATTTA+AGG + Chr6:35251745-35251764 MsG0680032157.01.T01:CDS 15.0%
!! TTATATTTGAAAATTTGTGT+AGG + Chr6:35257731-35257750 MsG0680032157.01.T01:intron 15.0%
!!! AATATTGATTTTCTGTAAAT+TGG + Chr6:35253309-35253328 MsG0680032157.01.T01:intron 15.0%
!!! ACAATATTTTGTTTTGAAAA+AGG + Chr6:35256198-35256217 MsG0680032157.01.T01:intron 15.0%
!!! ATTAAGTTTTTAAACAATTC+GGG - Chr6:35252450-35252431 None:intergenic 15.0%
!!! CAATCAAATATGTTTTTATT+GGG + Chr6:35251361-35251380 MsG0680032157.01.T01:intron 15.0%
!!! GAACTTAAATATTTAAAACT+AGG - Chr6:35250652-35250671 None:intergenic 15.0%
!!! TATAGATTCATTTTTCAAAT+TGG + Chr6:35253148-35253167 MsG0680032157.01.T01:intron 15.0%
!!! TTAAATATTTAAAACTAGGA+TGG - Chr6:35250648-35250667 None:intergenic 15.0%
!!! TTGAAAACAAACTTTTTTTT+TGG - Chr6:35252499-35252518 None:intergenic 15.0%
!!! TTTTTCAAAACAAAATATTG+TGG - Chr6:35256199-35256218 None:intergenic 15.0%
!!! TTTTTGCTTATATTTCATTT+CGG + Chr6:35257558-35257577 MsG0680032157.01.T01:intron 15.0%
!!! TTTTTGTACATAATCTAAAT+TGG + Chr6:35257033-35257052 MsG0680032157.01.T01:intron 15.0%
!! AAAAAAACAAAAGATCATGT+AGG - Chr6:35255551-35255570 None:intergenic 20.0%
!! AAAAAATCAAAAGATCATGT+TGG + Chr6:35255282-35255301 MsG0680032157.01.T01:intron 20.0%
!! AAAGAAAATGTTTGTAACAA+TGG - Chr6:35251447-35251428 None:intergenic 20.0%
!! AAATTTAAACACAATCAAGA+AGG - Chr6:35256439-35256458 None:intergenic 20.0%
!! AACCTTTATTATGTAAAAAC+AGG + Chr6:35256294-35256313 MsG0680032157.01.T01:intron 20.0%
!! AATGTGGATATATAAAACTT+AGG + Chr6:35254020-35254039 MsG0680032157.01.T01:intron 20.0%
!! ACAAAAAAAAGATTTAAGGA+AGG + Chr6:35251749-35251768 MsG0680032157.01.T01:CDS 20.0%
!! ACTTAAGAGTTAATTTACTA+TGG - Chr6:35256825-35256844 None:intergenic 20.0%
!! ACTTCTCAACTAAAAATATT+TGG - Chr6:35254813-35254832 None:intergenic 20.0%
!! AGAAAATAACGAGTAAAAAA+TGG + Chr6:35256331-35256350 MsG0680032157.01.T01:intron 20.0%
!! ATATAATACATACGAATTAC+TGG - Chr6:35254210-35254229 None:intergenic 20.0%
!! ATCAAAATTGTCAAACAAAA+GGG - Chr6:35254348-35254367 None:intergenic 20.0%
!! ATGTATGTGGTTAAAAATTA+AGG + Chr6:35257508-35257527 MsG0680032157.01.T01:intron 20.0%
!! CAATGTCCTTAAATATTTAT+GGG + Chr6:35251146-35251165 MsG0680032157.01.T01:intron 20.0%
!! TAAAAACATATTTGATTGCA+CGG - Chr6:35251359-35251378 None:intergenic 20.0%
!! TAATTAAACAATACAATGTG+TGG + Chr6:35256524-35256543 MsG0680032157.01.T01:intron 20.0%
!! TATATACAAAATTAGGATCA+AGG + Chr6:35252052-35252071 MsG0680032157.01.T01:intron 20.0%
!! TATCAAAATTGTCAAACAAA+AGG - Chr6:35254349-35254368 None:intergenic 20.0%
!! TATTAGTTAATTGCATTACA+GGG + Chr6:35253453-35253472 MsG0680032157.01.T01:intron 20.0%
!! TCAAAACACAATTTAATAAC+AGG - Chr6:35253376-35253395 None:intergenic 20.0%
!! TGAATTGTACATTAATATCA+AGG - Chr6:35254297-35254316 None:intergenic 20.0%
!! TTATTAGTTAATTGCATTAC+AGG + Chr6:35253452-35253471 MsG0680032157.01.T01:intron 20.0%
!! TTGAAAAATGAATCTATAAG+TGG - Chr6:35253146-35253165 None:intergenic 20.0%
!!! AACCTGTTTTTACATAATAA+AGG - Chr6:35256299-35256318 None:intergenic 20.0%
!!! ACAAACATTTTCTTTGTATT+AGG - Chr6:35251423-35251442 None:intergenic 20.0%
!!! AGTTTAAAATTTCAAAACAC+GGG - Chr6:35251217-35251236 None:intergenic 20.0%
!!! AGTTTGAAATTTCAAAATAC+GGG + Chr6:35252753-35252772 MsG0680032157.01.T01:intron 20.0%
!!! AGTTTTTTTCAATAGGTATA+TGG + Chr6:35256798-35256817 MsG0680032157.01.T01:intron 20.0%
!!! ATCATTGAAAAAAGTTTTGA+AGG - Chr6:35250781-35250800 None:intergenic 20.0%
!!! ATTAAATTGTGTTTTGATGT+TGG + Chr6:35253379-35253398 MsG0680032157.01.T01:intron 20.0%
!!! ATTGGATTTTGAAGATTTAT+TGG + Chr6:35253327-35253346 MsG0680032157.01.T01:intron 20.0%
!!! CAAATACATTTCTTTACTTT+TGG + Chr6:35254882-35254901 MsG0680032157.01.T01:intron 20.0%
!!! CAATCAAATGTGTTTTTATT+GGG - Chr6:35252602-35252621 None:intergenic 20.0%
!!! CTTTTTTCTGTTTCATTATT+GGG + Chr6:35252216-35252235 MsG0680032157.01.T01:intron 20.0%
!!! CTTTTTTTTGTTTCATTACA+GGG - Chr6:35251740-35251759 None:intergenic 20.0%
!!! GAGTTTAAAATTTCAAAACA+CGG - Chr6:35251218-35251237 None:intergenic 20.0%
!!! GAGTTTGAAATTTCAAAATA+CGG + Chr6:35252752-35252771 MsG0680032157.01.T01:intron 20.0%
!!! GCAATCAAATATGTTTTTAT+TGG + Chr6:35251360-35251379 MsG0680032157.01.T01:intron 20.0%
!!! TACTTAACTTACGTAATTTT+TGG + Chr6:35254556-35254575 MsG0680032157.01.T01:intron 20.0%
!!! TCTTTTTTCTGTTTCATTAT+TGG + Chr6:35252215-35252234 MsG0680032157.01.T01:intron 20.0%
!!! TCTTTTTTTTGTTTCATTAC+AGG - Chr6:35251741-35251760 None:intergenic 20.0%
!!! TTATTTTCATTTTCCTTTAC+AGG + Chr6:35255335-35255354 MsG0680032157.01.T01:intron 20.0%
!!! TTTCTGAAGTTTTTTTCAAT+AGG + Chr6:35256791-35256810 MsG0680032157.01.T01:intron 20.0%
!!! TTTGAAAACAAACCTTTTTT+TGG + Chr6:35251462-35251481 MsG0680032157.01.T01:intron 20.0%
!!! TTTTGTTAAGTTTTTCTGAT+AGG + Chr6:35257137-35257156 MsG0680032157.01.T01:intron 20.0%
!!! TTTTTAATATGATCATGTCA+TGG + Chr6:35253837-35253856 MsG0680032157.01.T01:intron 20.0%
!!! TTTTTACAGGTAATTTGAAA+TGG + Chr6:35253724-35253743 MsG0680032157.01.T01:intron 20.0%
! AAAAACATATTTGATTGCAC+GGG - Chr6:35251358-35251377 None:intergenic 25.0%
! AAGCAAATTCCTTATTGTAA+TGG + Chr6:35257695-35257714 MsG0680032157.01.T01:intron 25.0%
! AATCTTCATCCATTACAATA+AGG - Chr6:35257707-35257726 None:intergenic 25.0%
! AATGATTCATAGTGATGTTT+GGG + Chr6:35250795-35250814 MsG0680032157.01.T01:intron 25.0%
! AATGTCCCTAAATATTTATG+GGG - Chr6:35252824-35252843 None:intergenic 25.0%
! ACCAATATAACACATTAATC+GGG + Chr6:35255639-35255658 MsG0680032157.01.T01:intron 25.0%
! ACCAATATAACACATTAATC+GGG - Chr6:35255658-35255639 None:intergenic 25.0%
! ACTTAAAATATTTGGATGCA+CGG - Chr6:35251312-35251293 None:intergenic 25.0%
! AGATGATCATTACCAAAAAA+AGG - Chr6:35252503-35252484 None:intergenic 25.0%
! ATGTGAAAAGAATGTTATAG+AGG + Chr6:35255580-35255599 MsG0680032157.01.T01:intron 25.0%
! ATGTGAAAAGAATGTTATAG+AGG - Chr6:35255599-35255580 None:intergenic 25.0%
! ATTGTCTCAAGTATTATTTG+TGG + Chr6:35254940-35254959 MsG0680032157.01.T01:CDS 25.0%
! CAAAAGAAATGTAACTGTTA+TGG + Chr6:35256962-35256981 MsG0680032157.01.T01:intron 25.0%
! CAATGTCCCTAAATATTTAT+GGG - Chr6:35252825-35252844 None:intergenic 25.0%
! CACCAATATAACACATTAAT+CGG + Chr6:35255638-35255657 MsG0680032157.01.T01:intron 25.0%
! CACCAATATAACACATTAAT+CGG - Chr6:35255657-35255638 None:intergenic 25.0%
! CATGTGATATTTGCATAAAT+CGG + Chr6:35254258-35254277 MsG0680032157.01.T01:intron 25.0%
! CCAATGTCCTTAAATATTTA+TGG + Chr6:35251145-35251164 MsG0680032157.01.T01:intron 25.0%
! CCATAAATATTTAAGGACAT+TGG - Chr6:35251148-35251167 None:intergenic 25.0%
! CTATTATTATGAAGGAAAGA+GGG + Chr6:35256591-35256610 MsG0680032157.01.T01:intron 25.0%
! CTTCATCCCATAAATATTTA+AGG - Chr6:35251155-35251174 None:intergenic 25.0%
! GAAGGTTTATAAGATTGAAT+TGG - Chr6:35250763-35250782 None:intergenic 25.0%
! GACTAACCACTTAAAATATT+TGG + Chr6:35251285-35251304 MsG0680032157.01.T01:intron 25.0%
! GAGTTACCACTTAAAATATT+TGG - Chr6:35252678-35252697 None:intergenic 25.0%
! GATTAATGTGTTATATTGGT+GGG + Chr6:35255187-35255206 MsG0680032157.01.T01:intron 25.0%
! GATTAATGTGTTATATTGGT+GGG - Chr6:35255206-35255187 None:intergenic 25.0%
! GTACTTTATCCAACAAAAAA+TGG + Chr6:35250833-35250852 MsG0680032157.01.T01:intron 25.0%
! GTTTCTCTATGATTTATGAT+CGG + Chr6:35250488-35250507 MsG0680032157.01.T01:five_prime_UTR 25.0%
! TAAAAACACATTTGATTGCA+CGG + Chr6:35252604-35252623 MsG0680032157.01.T01:intron 25.0%
! TATATAGAGAATTAGGATCA+AGG - Chr6:35251904-35251923 None:intergenic 25.0%
! TATTTACTCTTGTTAGTGAA+AGG + Chr6:35253909-35253928 MsG0680032157.01.T01:intron 25.0%
! TATTTCAAAAAACTTCGCAA+AGG + Chr6:35252730-35252749 MsG0680032157.01.T01:intron 25.0%
! TATTTCAAGAAACTTTGCAA+AGG - Chr6:35251240-35251259 None:intergenic 25.0%
! TCATAGTATTGTAACTCTTA+TGG + Chr6:35257168-35257187 MsG0680032157.01.T01:intron 25.0%
! TCTATAAGTGGTGAAAAAAT+TGG - Chr6:35253134-35253153 None:intergenic 25.0%
! TCTATTATTATGAAGGAAAG+AGG + Chr6:35256590-35256609 MsG0680032157.01.T01:intron 25.0%
! TCTTGTTCAACAAAAAGTTT+AGG - Chr6:35250682-35250701 None:intergenic 25.0%
! TGAAACAGAAAAAAGATTTG+AGG - Chr6:35252211-35252230 None:intergenic 25.0%
! TGTCTGTTCTATTATTATGA+AGG + Chr6:35256583-35256602 MsG0680032157.01.T01:intron 25.0%
! TTACCTGTAAAAAAAACTCT+AGG - Chr6:35253717-35253736 None:intergenic 25.0%
! TTGTATTTCTCTCCTATAAA+AGG - Chr6:35256619-35256638 None:intergenic 25.0%
! TTTGTAGCATCACAAAATTA+CGG - Chr6:35253548-35253567 None:intergenic 25.0%
! TTTGTTGAAAGAAAAATCTG+AGG + Chr6:35250887-35250906 MsG0680032157.01.T01:intron 25.0%
!! AAGTTTTTCTGATAGGTATA+TGG + Chr6:35257144-35257163 MsG0680032157.01.T01:intron 25.0%
!! ACAAACATTTTCTTTGTACT+AGG + Chr6:35252540-35252559 MsG0680032157.01.T01:intron 25.0%
!! ACCTTTCAATAAGATTTTGA+CGG + Chr6:35257602-35257621 MsG0680032157.01.T01:intron 25.0%
!! AGTTTTTCTGATAGGTATAT+GGG + Chr6:35257145-35257164 MsG0680032157.01.T01:intron 25.0%
!! ATATTTGATCTTAGAGGTTT+TGG + Chr6:35254718-35254737 MsG0680032157.01.T01:CDS 25.0%
!! GAATTTAAAACAGAATGACA+TGG + Chr6:35250525-35250544 MsG0680032157.01.T01:five_prime_UTR 25.0%
!! GAATTTGTAGAAAAGCATAT+GGG + Chr6:35256462-35256481 MsG0680032157.01.T01:intron 25.0%
!! GGAAAATTTTTCCTTGAAAA+TGG - Chr6:35252919-35252938 None:intergenic 25.0%
!! TAAATTTTGCCTTTCCAAAT+TGG - Chr6:35251779-35251798 None:intergenic 25.0%
!! TGAATTTGTAGAAAAGCATA+TGG + Chr6:35256461-35256480 MsG0680032157.01.T01:intron 25.0%
!!! AAGTTCGTCTAATTTTTTCA+AGG + Chr6:35252343-35252362 MsG0680032157.01.T01:intron 25.0%
!!! AGTGATAAACCATTTTTTGT+TGG - Chr6:35250845-35250864 None:intergenic 25.0%
!!! ATCTCCAGTTTGTTAAAAAA+AGG - Chr6:35253094-35253113 None:intergenic 25.0%
!!! ATTGTTTCCTTAGTTTTATG+AGG - Chr6:35251940-35251959 None:intergenic 25.0%
!!! CATTTATAACCTTTTTGAGA+AGG + Chr6:35252570-35252589 MsG0680032157.01.T01:intron 25.0%
!!! CATTTATAACCTTTTTGAGA+AGG - Chr6:35252589-35252570 None:intergenic 25.0%
!!! GACTGTATATTTTTGGTAAT+TGG + Chr6:35254492-35254511 MsG0680032157.01.T01:intron 25.0%
!!! GCAATCAAATGTGTTTTTAT+TGG - Chr6:35252603-35252622 None:intergenic 25.0%
!!! GGAAATTTTTTCCTTGAAAA+TGG + Chr6:35251017-35251036 MsG0680032157.01.T01:intron 25.0%
!!! TAACCTAGAGTTTTTTTTAC+AGG + Chr6:35253711-35253730 MsG0680032157.01.T01:intron 25.0%
!!! TATTTAAGATCAGCATTTTC+TGG - Chr6:35254745-35254764 None:intergenic 25.0%
!!! TTTTGGTAATGATCATCTTT+GGG - Chr6:35252482-35252501 None:intergenic 25.0%
!!! TTTTTCAAAGCATTTCCTTT+AGG - Chr6:35251599-35251618 None:intergenic 25.0%
!!! TTTTTGGTAATGATCATCTT+CGG + Chr6:35251478-35251497 MsG0680032157.01.T01:intron 25.0%
!!! TTTTTGGTAATGATCATCTT+TGG - Chr6:35251497-35251478 None:intergenic 25.0%
AAAAACACATTTGATTGCAC+GGG + Chr6:35252605-35252624 MsG0680032157.01.T01:intron 30.0%
AAAACATATTTGATTGCACG+GGG - Chr6:35251357-35251376 None:intergenic 30.0%
AAACTATCCTCTACGATAAA+AGG - Chr6:35255965-35255984 None:intergenic 30.0%
AAATACTTGAGACAATCGAT+TGG + Chr6:35255890-35255909 MsG0680032157.01.T01:intron 30.0%
AACAATGATTTAAGCATGGA+AGG - Chr6:35256169-35256188 None:intergenic 30.0%
AATACTTGAGACAATCGATT+TGG - Chr6:35255910-35255891 None:intergenic 30.0%
ACAGAAAAAAGATTTGAGGA+AGG - Chr6:35252207-35252226 None:intergenic 30.0%
ACATTATGTTGTGGCATTTA+AGG + Chr6:35250617-35250636 MsG0680032157.01.T01:five_prime_UTR 30.0%
ACTTTGACAACATGATTCAA+TGG + Chr6:35257304-35257323 MsG0680032157.01.T01:intron 30.0%
AGGTCGGTATATACAAAATT+AGG + Chr6:35252045-35252064 MsG0680032157.01.T01:intron 30.0%
AGTAGTCAACTTGCATAAAA+GGG - Chr6:35254452-35254471 None:intergenic 30.0%
AGTTGAAATGTTGATGTATG+TGG - Chr6:35257534-35257553 None:intergenic 30.0%
AGTTTATGCAAGATCTAATG+TGG + Chr6:35254004-35254023 MsG0680032157.01.T01:intron 30.0%
ATAAGGATGACATTATGTTG+TGG + Chr6:35250608-35250627 MsG0680032157.01.T01:five_prime_UTR 30.0%
ATAATCCAACATGTCAAACA+AGG - Chr6:35255319-35255338 None:intergenic 30.0%
ATAGAAACATGACCAAAAAC+AGG - Chr6:35256404-35256423 None:intergenic 30.0%
ATATTCACACACCATAAATG+TGG - Chr6:35256924-35256943 None:intergenic 30.0%
ATCTATGTATACCTTATGCT+TGG - Chr6:35254420-35254439 None:intergenic 30.0%
ATGATCGGAAATCAAAGTTA+TGG + Chr6:35250503-35250522 MsG0680032157.01.T01:five_prime_UTR 30.0%
ATGATTCATAGTGATGTTTG+GGG + Chr6:35250796-35250815 MsG0680032157.01.T01:intron 30.0%
ATGGTAAGCATTTGTATGTT+GGG + Chr6:35253421-35253440 MsG0680032157.01.T01:intron 30.0%
ATTGTTTCCTAAGTTCTATG+AGG + Chr6:35252016-35252035 MsG0680032157.01.T01:intron 30.0%
CAATGATTCATAGTGATGTT+TGG + Chr6:35250794-35250813 MsG0680032157.01.T01:intron 30.0%
CATGAACAATGATTTAAGCA+TGG - Chr6:35256173-35256192 None:intergenic 30.0%
CCAATATAACACATTAATCG+GGG + Chr6:35255640-35255659 MsG0680032157.01.T01:intron 30.0%
CCAATATAACACATTAATCG+GGG - Chr6:35255659-35255640 None:intergenic 30.0%
CCAATGTCCCTAAATATTTA+TGG - Chr6:35252826-35252845 None:intergenic 30.0%
CCATAAATATTTAGGGACAT+TGG + Chr6:35252823-35252842 MsG0680032157.01.T01:intron 30.0%
CCTGTAAAGGAAAATGAAAA+TGG + Chr6:35255494-35255513 MsG0680032157.01.T01:intron 30.0%
CGATTAATGTGTTATATTGG+TGG + Chr6:35255186-35255205 MsG0680032157.01.T01:intron 30.0%
CGATTAATGTGTTATATTGG+TGG - Chr6:35255205-35255186 None:intergenic 30.0%
CTTCACCCCATAAATATTTA+GGG + Chr6:35252816-35252835 MsG0680032157.01.T01:intron 30.0%
CTTGCAATATTTGATCTTAG+AGG + Chr6:35254712-35254731 MsG0680032157.01.T01:CDS 30.0%
GAGCAAAATTTAACCTGTAA+AGG + Chr6:35255481-35255500 MsG0680032157.01.T01:intron 30.0%
GAGCAAAATTTAACCTGTAA+AGG - Chr6:35255500-35255481 None:intergenic 30.0%
GTATGTGTATAGTATGCTAA+GGG + Chr6:35255085-35255104 MsG0680032157.01.T01:intron 30.0%
GTGGATATATAAAACTTAGG+TGG + Chr6:35254023-35254042 MsG0680032157.01.T01:intron 30.0%
TAAATATTTAGGGACATTGG+TGG + Chr6:35252826-35252845 MsG0680032157.01.T01:intron 30.0%
TAAGGATCAAACAGAATTTG+AGG - Chr6:35252309-35252328 None:intergenic 30.0%
TAAGTTAGAACTGAAGCAAT+TGG + Chr6:35252703-35252722 MsG0680032157.01.T01:intron 30.0%
TAAGTTCTATGAGGAAATCA+AGG + Chr6:35252025-35252044 MsG0680032157.01.T01:intron 30.0%
TACCTCTTATAATGAACTGA+TGG + Chr6:35250555-35250574 MsG0680032157.01.T01:five_prime_UTR 30.0%
TATTCACACACCATAAATGT+GGG - Chr6:35256923-35256942 None:intergenic 30.0%
TCACTTGATTAATCCGATTA+TGG + Chr6:35253862-35253881 MsG0680032157.01.T01:intron 30.0%
TCATTATTGGGATCTTTATG+TGG + Chr6:35252228-35252247 MsG0680032157.01.T01:intron 30.0%
TCCGTCAAAATCTTATTGAA+AGG - Chr6:35257606-35257625 None:intergenic 30.0%
TGCAATTTCTTAGCATCAAT+GGG - Chr6:35254533-35254552 None:intergenic 30.0%
TGTATGTGTATAGTATGCTA+AGG + Chr6:35255084-35255103 MsG0680032157.01.T01:intron 30.0%
TTAAGGAAGGAAATCCAATT+TGG + Chr6:35251762-35251781 MsG0680032157.01.T01:CDS 30.0%
TTGATGTCCTCATAAAACTA+AGG + Chr6:35251930-35251949 MsG0680032157.01.T01:CDS 30.0%
TTGATTTCCTCATAGAACTT+AGG - Chr6:35252026-35252045 None:intergenic 30.0%
TTTGTTCAAGAGCAGAAAAT+AGG - Chr6:35254850-35254869 None:intergenic 30.0%
! AATTGTGTTGTTGAGTTTCA+TGG + Chr6:35253402-35253421 MsG0680032157.01.T01:intron 30.0%
! ATCAGAGTAAGACAGTTTTA+CGG - Chr6:35250461-35250480 None:intergenic 30.0%
! ATTGGATCAGTGCTATTATA+AGG + Chr6:35250591-35250610 MsG0680032157.01.T01:five_prime_UTR 30.0%
! CCATTTTCATTTTCCTTTAC+AGG - Chr6:35255497-35255516 None:intergenic 30.0%
! GATACACAATTCCATTTTCA+AGG + Chr6:35252905-35252924 MsG0680032157.01.T01:intron 30.0%
! GATGTTGGACTGTATATTTT+TGG + Chr6:35254485-35254504 MsG0680032157.01.T01:intron 30.0%
! TAAATTTTGCCGTTCCAAAT+TGG + Chr6:35252177-35252196 MsG0680032157.01.T01:intron 30.0%
! TACTTGATCATTGTTTCTTC+TGG - Chr6:35252171-35252152 None:intergenic 30.0%
! TTCAATGCATATTCAAGTTC+TGG - Chr6:35256064-35256083 None:intergenic 30.0%
! TTGAAAGAAAAATCTGAGGT+AGG + Chr6:35250891-35250910 MsG0680032157.01.T01:intron 30.0%
!! AAGATTTTGACGGAAAACAT+GGG + Chr6:35257612-35257631 MsG0680032157.01.T01:intron 30.0%
!! AGTTCTAAACACCTGTATTT+GGG - Chr6:35250964-35250983 None:intergenic 30.0%
!! GTGCATCCAAATATTTTAAG+TGG + Chr6:35252669-35252688 MsG0680032157.01.T01:intron 30.0%
!! GTGCATCCAAATATTTTAAG+TGG - Chr6:35252688-35252669 None:intergenic 30.0%
!! GTGTGTTTTCTTATTTGAGA+AGG + Chr6:35254654-35254673 MsG0680032157.01.T01:CDS 30.0%
!! TAAGATTTTGACGGAAAACA+TGG + Chr6:35257611-35257630 MsG0680032157.01.T01:intron 30.0%
!! TTTGGTAATGATCATCTTTG+GGG - Chr6:35252481-35252500 None:intergenic 30.0%
!! TTTTTGGTATGTTTCGTTCT+AGG + Chr6:35254572-35254591 MsG0680032157.01.T01:intron 30.0%
!!! CGTACCTTTTTTTAACAAAC+TGG + Chr6:35253087-35253106 MsG0680032157.01.T01:intron 30.0%
!!! GGGGTTTTAAAGAACTATTT+CGG - Chr6:35257409-35257428 None:intergenic 30.0%
!!! GGGTTTTAAAGAACTATTTC+GGG - Chr6:35257408-35257427 None:intergenic 30.0%
!!! TTAGTTTTATGAGGACATCA+AGG - Chr6:35251931-35251950 None:intergenic 30.0%
!!! TTTTGGTAATGATCATCTTC+GGG + Chr6:35251479-35251498 MsG0680032157.01.T01:intron 30.0%
AAAACACATTTGATTGCACG+GGG + Chr6:35252606-35252625 MsG0680032157.01.T01:intron 35.0%
AAAATTGGACACACAGCAAA+AGG - Chr6:35253119-35253138 None:intergenic 35.0%
AAACATAAAGAGAGATGGGT+AGG - Chr6:35253812-35253831 None:intergenic 35.0%
AAACCCCAATCTTGTACATT+TGG + Chr6:35257422-35257441 MsG0680032157.01.T01:intron 35.0%
AAAGAACTATTTCGGGAATG+TGG - Chr6:35257401-35257420 None:intergenic 35.0%
AAATTGGACACACAGCAAAA+GGG - Chr6:35253118-35253137 None:intergenic 35.0%
AACACAAATCGGACCATAAT+CGG - Chr6:35253878-35253897 None:intergenic 35.0%
AATCTTACTTCAGCTATCTC+AGG - Chr6:35253788-35253807 None:intergenic 35.0%
ACACAATCTCTTATCTTCTG+CGG - Chr6:35254638-35254657 None:intergenic 35.0%
ACCACAAACATAAAGAGAGA+TGG - Chr6:35253817-35253836 None:intergenic 35.0%
ACCATAAATGTGGGAAATCT+GGG - Chr6:35256914-35256933 None:intergenic 35.0%
ACTTATTCCTTCCATGAGTA+AGG - Chr6:35252327-35252346 None:intergenic 35.0%
AGAAAGCTGCAAAATCATGT+CGG + Chr6:35254160-35254179 MsG0680032157.01.T01:intron 35.0%
AGGTCCAAATGTACAAGATT+GGG - Chr6:35257429-35257448 None:intergenic 35.0%
AGGTCGGTATATAGAGAATT+AGG - Chr6:35251911-35251930 None:intergenic 35.0%
AGTGATTATGTTAATCGCGT+TGG - Chr6:35253633-35253652 None:intergenic 35.0%
AGTTGAAAGGTCAATGTATG+TGG + Chr6:35257495-35257514 MsG0680032157.01.T01:intron 35.0%
ATGAGGCTTCTCAAACAAAA+TGG - Chr6:35253232-35253251 None:intergenic 35.0%
CACCAAACTTTAACGTTTGT+AGG + Chr6:35255415-35255434 MsG0680032157.01.T01:intron 35.0%
CATGACCAAAAACAGGATTA+CGG - Chr6:35256397-35256416 None:intergenic 35.0%
CATGGTAAGCATTTGTATGT+TGG + Chr6:35253420-35253439 MsG0680032157.01.T01:intron 35.0%
CATTTCTTCACTTCAATGTG+AGG + Chr6:35250702-35250721 MsG0680032157.01.T01:intron 35.0%
CCACAAACATAAAGAGAGAT+GGG - Chr6:35253816-35253835 None:intergenic 35.0%
CCCCGATTAATGTGTTATAT+TGG + Chr6:35255183-35255202 MsG0680032157.01.T01:intron 35.0%
CCCCGATTAATGTGTTATAT+TGG - Chr6:35255202-35255183 None:intergenic 35.0%
CTACAAACGTTAAAGTTTGG+TGG - Chr6:35255417-35255436 None:intergenic 35.0%
CTGCAATTTCTTAGCATCAA+TGG - Chr6:35254534-35254553 None:intergenic 35.0%
CTGTATTTGGGTGTTAAACT+GGG - Chr6:35250952-35250971 None:intergenic 35.0%
GAAGGAAATCCAATTTGGAA+AGG + Chr6:35251767-35251786 MsG0680032157.01.T01:CDS 35.0%
GAAGGAAATCCAATTTGGAA+CGG - Chr6:35251786-35251767 None:intergenic 35.0%
GAATGAAAGATCAGCAAAAG+TGG + Chr6:35257471-35257490 MsG0680032157.01.T01:intron 35.0%
GAGTAGTCAACTTGCATAAA+AGG - Chr6:35254453-35254472 None:intergenic 35.0%
GCCTACAACAAAAGATGTTT+GGG + Chr6:35250432-35250451 MsG0680032157.01.T01:five_prime_UTR 35.0%
GCTTCACCCCATAAATATTT+AGG + Chr6:35252815-35252834 MsG0680032157.01.T01:intron 35.0%
GTCTGTGTATAGTATGCTAA+GGG - Chr6:35255741-35255760 None:intergenic 35.0%
GTGAAGTAATAAAGAGATCG+AGG + Chr6:35255703-35255722 MsG0680032157.01.T01:intron 35.0%
GTGAAGTAATAAAGAGATCG+AGG - Chr6:35255722-35255703 None:intergenic 35.0%
GTTAAAATCACATGCTTCTC+AGG + Chr6:35255009-35255028 MsG0680032157.01.T01:CDS 35.0%
GTTAAAATCACATGTCTCGT+AGG - Chr6:35255817-35255836 None:intergenic 35.0%
TAAGGATCAATCAGAGTTTG+AGG + Chr6:35251646-35251665 MsG0680032157.01.T01:CDS 35.0%
TAGCAGTGACATTATTTGCA+GGG + Chr6:35256874-35256893 MsG0680032157.01.T01:intron 35.0%
TCAGCTCATCAAAAGATTGA+CGG - Chr6:35253673-35253692 None:intergenic 35.0%
TCAGTTAGAACTGAAGCAAT+TGG - Chr6:35251267-35251286 None:intergenic 35.0%
TCATTACAGGGATCTTTATG+TGG - Chr6:35251728-35251747 None:intergenic 35.0%
TCATTTACATCTGCACCTAA+AGG + Chr6:35251581-35251600 MsG0680032157.01.T01:intron 35.0%
TCTTTAGCTGCATATGTACA+TGG + Chr6:35252371-35252390 MsG0680032157.01.T01:intron 35.0%
TGATTCATAGTGATGTTTGG+GGG + Chr6:35250797-35250816 MsG0680032157.01.T01:intron 35.0%
TGATTGCATGATGAGAGAAA+GGG - Chr6:35253011-35253030 None:intergenic 35.0%
TGCCTACAAACGTTAAAGTT+TGG - Chr6:35255420-35255439 None:intergenic 35.0%
TGCCTACAACAAAAGATGTT+TGG + Chr6:35250431-35250450 MsG0680032157.01.T01:five_prime_UTR 35.0%
TGGATCAATCATGTCAAACA+AGG + Chr6:35255514-35255533 MsG0680032157.01.T01:intron 35.0%
TGTAGCTATTGCCAAAATCA+CGG + Chr6:35253569-35253588 MsG0680032157.01.T01:intron 35.0%
TGTCAAACAAAAGGGAGAAT+AGG - Chr6:35254340-35254359 None:intergenic 35.0%
TGTCTGTGTATAGTATGCTA+AGG - Chr6:35255742-35255761 None:intergenic 35.0%
TTAATGTTCCCATAGCCTTT+AGG + Chr6:35251969-35251988 MsG0680032157.01.T01:CDS 35.0%
TTCTATGAGGAAATCAAGGT+CGG + Chr6:35252029-35252048 MsG0680032157.01.T01:intron 35.0%
TTCTGTTTGATCCTTACTCA+TGG + Chr6:35252313-35252332 MsG0680032157.01.T01:intron 35.0%
TTGAGGAAGGAAATCCAATT+TGG - Chr6:35252194-35252213 None:intergenic 35.0%
TTGATTGCATGATGAGAGAA+AGG - Chr6:35253012-35253031 None:intergenic 35.0%
TTTCTGCTCTTGAACAAAAC+TGG + Chr6:35254852-35254871 MsG0680032157.01.T01:intron 35.0%
! ATGTTGTGGCATTTAAGGTT+AGG + Chr6:35250622-35250641 MsG0680032157.01.T01:five_prime_UTR 35.0%
! CTCTTTTGTTCACTTGATGT+TGG + Chr6:35254470-35254489 MsG0680032157.01.T01:intron 35.0%
! GATAAAGTACTTGTCCGATT+AGG - Chr6:35250823-35250842 None:intergenic 35.0%
! GCAGCTTTCTTTTATGAACA+TGG - Chr6:35254150-35254169 None:intergenic 35.0%
! TACTCATGTGTTACTGACAA+TGG - Chr6:35252967-35252986 None:intergenic 35.0%
! TCAATCTTTTGATGAGCTGA+GGG + Chr6:35253673-35253692 MsG0680032157.01.T01:intron 35.0%
! TCGTGCAATCTCATTTTGTT+GGG + Chr6:35252862-35252881 MsG0680032157.01.T01:intron 35.0%
! TCTTTTGTCAAGTAGTCAAG+TGG - Chr6:35256949-35256968 None:intergenic 35.0%
! TGATGCACAATCCATTTTCA+AGG - Chr6:35251031-35251050 None:intergenic 35.0%
! TGTGAGTTTGCTTAACATCA+TGG + Chr6:35250727-35250746 MsG0680032157.01.T01:intron 35.0%
! TTACCTTACCTCAGGTATTT+TGG + Chr6:35256110-35256129 MsG0680032157.01.T01:intron 35.0%
! TTTTATGAGGACATCAAGGT+CGG - Chr6:35251927-35251946 None:intergenic 35.0%
!! CAGTTCTAAACACCTGTATT+TGG - Chr6:35250965-35250984 None:intergenic 35.0%
!! TAAGAGAGTACTAAAGTGCA+GGG + Chr6:35256034-35256053 MsG0680032157.01.T01:intron 35.0%
!! TCCCAAACATCTTTTGTTGT+AGG - Chr6:35250436-35250455 None:intergenic 35.0%
!! TGTTTCGTTCTAGGACAATA+AGG + Chr6:35254581-35254600 MsG0680032157.01.T01:intron 35.0%
!! TTGGTAATGATCATCTTTGG+GGG - Chr6:35252480-35252499 None:intergenic 35.0%
!! TTTAGCCTTGTTTGACATGT+TGG + Chr6:35255311-35255330 MsG0680032157.01.T01:intron 35.0%
!! TTTGGTAATGATCATCTTCG+GGG + Chr6:35251480-35251499 MsG0680032157.01.T01:intron 35.0%
AAAACAGGATTACGGAACTG+TGG - Chr6:35256389-35256408 None:intergenic 40.0%
AAGTGCAGCAACATATCGAA+AGG - Chr6:35256005-35256024 None:intergenic 40.0%
AATGCCTTATCCCACTAAGT+GGG - Chr6:35254088-35254107 None:intergenic 40.0%
AATTGGACACACAGCAAAAG+GGG - Chr6:35253117-35253136 None:intergenic 40.0%
ACAATCTCTTATCTTCTGCG+GGG - Chr6:35254636-35254655 None:intergenic 40.0%
ACTAGTTGTTACCTTACCTC+AGG + Chr6:35256102-35256121 MsG0680032157.01.T01:intron 40.0%
ACTGATCCAATTCTTGCCAA+AGG - Chr6:35250582-35250601 None:intergenic 40.0%
ACTTACTCCTTCCATGAGTA+AGG + Chr6:35251628-35251647 MsG0680032157.01.T01:exon 40.0%
AGAGATTTACCTGTCTGAGT+CGG - Chr6:35252094-35252075 None:intergenic 40.0%
AGCAAGAACCAAAATACCTG+AGG - Chr6:35256121-35256140 None:intergenic 40.0%
AGCAGTGACATTATTTGCAG+GGG + Chr6:35256875-35256894 MsG0680032157.01.T01:intron 40.0%
ATAATGAACTGATGGCCCTT+TGG + Chr6:35250563-35250582 MsG0680032157.01.T01:five_prime_UTR 40.0%
ATCACAAAATTACGGTGGCT+CGG - Chr6:35253540-35253559 None:intergenic 40.0%
ATTTAGTAAGCTTCCCACTG+GGG + Chr6:35254678-35254697 MsG0680032157.01.T01:CDS 40.0%
CAAAATACGGGATGACAAGA+CGG + Chr6:35252765-35252784 MsG0680032157.01.T01:intron 40.0%
CAAAATGGCTTAAACACAGC+AGG - Chr6:35254971-35254990 None:intergenic 40.0%
CAAATGCTCAACCAAGCATA+AGG + Chr6:35254406-35254425 MsG0680032157.01.T01:intron 40.0%
CAATCTTGTACATTTGGACC+TGG + Chr6:35257428-35257447 MsG0680032157.01.T01:intron 40.0%
CACAATCTCTTATCTTCTGC+GGG - Chr6:35254637-35254656 None:intergenic 40.0%
CACCATAAATGTGGGAAATC+TGG - Chr6:35256915-35256934 None:intergenic 40.0%
CAGCAAAAGTGGTAGTTGAA+AGG + Chr6:35257482-35257501 MsG0680032157.01.T01:intron 40.0%
CAGGTCCAAATGTACAAGAT+TGG - Chr6:35257430-35257449 None:intergenic 40.0%
CATTTAGTAAGCTTCCCACT+GGG + Chr6:35254677-35254696 MsG0680032157.01.T01:CDS 40.0%
CCAGTTTAACACCCAAATAC+AGG + Chr6:35250950-35250969 MsG0680032157.01.T01:intron 40.0%
CCATAAATGTGGGAAATCTG+GGG - Chr6:35256913-35256932 None:intergenic 40.0%
CCCATCTCTCTTTATGTTTG+TGG + Chr6:35253813-35253832 MsG0680032157.01.T01:intron 40.0%
CCTGTATTTGGGTGTTAAAC+TGG - Chr6:35250953-35250972 None:intergenic 40.0%
CCTTGAAACAAGACTCTTGT+TGG - Chr6:35255942-35255961 None:intergenic 40.0%
CTAGCAGTGACATTATTTGC+AGG + Chr6:35256873-35256892 MsG0680032157.01.T01:intron 40.0%
CTCTGATTGATCCTTACTCA+TGG - Chr6:35251642-35251661 None:intergenic 40.0%
CTGATCCAATTCTTGCCAAA+GGG - Chr6:35250581-35250600 None:intergenic 40.0%
GAACCAAAATACCTGAGGTA+AGG - Chr6:35256116-35256135 None:intergenic 40.0%
GATTGATCCTTACTCATGGA+AGG - Chr6:35251638-35251657 None:intergenic 40.0%
GGCCATCAGTTCATTATAAG+AGG - Chr6:35250560-35250579 None:intergenic 40.0%
GGGTATTCACCTTCTCAAAA+AGG + Chr6:35251381-35251400 MsG0680032157.01.T01:intron 40.0%
GGGTATTCACCTTCTCAAAA+AGG - Chr6:35251400-35251381 None:intergenic 40.0%
GGTCCAAATGTACAAGATTG+GGG - Chr6:35257428-35257447 None:intergenic 40.0%
GTAGCATCACAAAATTACGG+TGG - Chr6:35253545-35253564 None:intergenic 40.0%
GTCATTCACGTTCGAAATGT+TGG + Chr6:35253761-35253780 MsG0680032157.01.T01:intron 40.0%
GTTCACAAACACAAGCATCT+TGG + Chr6:35251321-35251340 MsG0680032157.01.T01:intron 40.0%
GTTTGATCCTTACTCATGGA+AGG + Chr6:35252317-35252336 MsG0680032157.01.T01:intron 40.0%
TACCAACTGAGCTTCACTTA+CGG - Chr6:35256852-35256871 None:intergenic 40.0%
TCAAAACACGGGATGACATA+CGG - Chr6:35251206-35251225 None:intergenic 40.0%
TCATATTCTTGACTGAGCTG+AGG - Chr6:35251842-35251861 None:intergenic 40.0%
TCGGGGATATAAACTTGACA+TGG + Chr6:35255657-35255676 MsG0680032157.01.T01:intron 40.0%
TCGGGGATATAAACTTGACA+TGG - Chr6:35255676-35255657 None:intergenic 40.0%
TGAAATGGCTGAACCTTCAA+AGG + Chr6:35253739-35253758 MsG0680032157.01.T01:intron 40.0%
TGATACCATCTTTGCCTACT+TGG + Chr6:35253488-35253507 MsG0680032157.01.T01:intron 40.0%
TGCTGATCTTTCATTCCAGA+GGG - Chr6:35257467-35257486 None:intergenic 40.0%
TGTGTATAGTATGCTAAGGG+TGG + Chr6:35255088-35255107 MsG0680032157.01.T01:intron 40.0%
TGTGTATAGTATGCTAAGGG+TGG - Chr6:35255107-35255088 None:intergenic 40.0%
TGTTATATTGGTGGGAGAGT+TGG + Chr6:35255195-35255214 MsG0680032157.01.T01:intron 40.0%
TGTTATATTGGTGGGAGAGT+TGG - Chr6:35255214-35255195 None:intergenic 40.0%
TTAACTCACCCCAACAAAGT+GGG + Chr6:35251062-35251081 MsG0680032157.01.T01:intron 40.0%
TTCTTCATAAGCCGCCAAAA+TGG - Chr6:35254986-35255005 None:intergenic 40.0%
TTGCTGATCTTTCATTCCAG+AGG - Chr6:35257468-35257487 None:intergenic 40.0%
! CAGTTCCGTAATCCTGTTTT+TGG + Chr6:35256389-35256408 MsG0680032157.01.T01:intron 40.0%
! CTCGTGCAATCTCATTTTGT+TGG + Chr6:35252861-35252880 MsG0680032157.01.T01:intron 40.0%
! CTGCTGTGTTTAAGCCATTT+TGG + Chr6:35254969-35254988 MsG0680032157.01.T01:CDS 40.0%
! GTCAATCTTTTGATGAGCTG+AGG + Chr6:35253672-35253691 MsG0680032157.01.T01:intron 40.0%
! TAATGATCATCTTTGGGGGA+GGG - Chr6:35252476-35252495 None:intergenic 40.0%
! TTCAAGGCCTTTTATCGTAG+AGG + Chr6:35255955-35255974 MsG0680032157.01.T01:intron 40.0%
!! CCAACAAGAGTCTTGTTTCA+AGG + Chr6:35255939-35255958 MsG0680032157.01.T01:intron 40.0%
!! CTAAGAGAGTACTAAAGTGC+AGG + Chr6:35256033-35256052 MsG0680032157.01.T01:intron 40.0%
!! CTGTGTTTAAGCCATTTTGG+CGG + Chr6:35254972-35254991 MsG0680032157.01.T01:CDS 40.0%
!! GTTCACGAACAAAAGCATCT+TGG - Chr6:35252642-35252661 None:intergenic 40.0%
!! TTGGTAATGATCATCTTCGG+GGG + Chr6:35251481-35251500 MsG0680032157.01.T01:intron 40.0%
AACAAAGTGGGATTGCAGAG+AGG + Chr6:35251074-35251093 MsG0680032157.01.T01:intron 45.0%
AAGTATTTGCTCTTCCCCAG+TGG - Chr6:35254695-35254714 None:intergenic 45.0%
ACCAACTGAGCTTCACTTAC+GGG - Chr6:35256851-35256870 None:intergenic 45.0%
AGCTATTGCCAAAATCACGG+TGG + Chr6:35253572-35253591 MsG0680032157.01.T01:intron 45.0%
AGTATTTGCTCTTCCCCAGT+GGG - Chr6:35254694-35254713 None:intergenic 45.0%
ATCCTAGTACATGACCTACC+TGG - Chr6:35251998-35252017 None:intergenic 45.0%
ATCTCACTGTTCGTCCAAGT+AGG - Chr6:35253505-35253524 None:intergenic 45.0%
ATGCCTTATCCCACTAAGTG+GGG - Chr6:35254087-35254106 None:intergenic 45.0%
ATTTCGGGAATGTGGTGAGT+TGG - Chr6:35257393-35257412 None:intergenic 45.0%
CAATGCCTTATCCCACTAAG+TGG - Chr6:35254089-35254108 None:intergenic 45.0%
CACAATGGCTTAAACACAGC+AGG + Chr6:35255855-35255874 MsG0680032157.01.T01:intron 45.0%
CCCCAGATTTCCCACATTTA+TGG + Chr6:35256910-35256929 MsG0680032157.01.T01:intron 45.0%
CGAACGTGAATGACCTTTGA+AGG - Chr6:35253755-35253774 None:intergenic 45.0%
CTCTGCAATCCCACTTTGTT+GGG - Chr6:35251074-35251093 None:intergenic 45.0%
CTCTGCAGAAACTCTCAAGA+AGG + Chr6:35255368-35255387 MsG0680032157.01.T01:CDS 45.0%
CTCTGCAGAAACTCTCAAGA+AGG - Chr6:35255387-35255368 None:intergenic 45.0%
CTGCTGTGTTTAAGCCATTG+TGG - Chr6:35255857-35255876 None:intergenic 45.0%
CTGTGTTTAAGCCATTGTGG+CGG - Chr6:35255854-35255873 None:intergenic 45.0%
CTTGACTGAGCTGAGGAATA+GGG - Chr6:35251835-35251854 None:intergenic 45.0%
GCATTTAGTAAGCTTCCCAC+TGG + Chr6:35254676-35254695 MsG0680032157.01.T01:CDS 45.0%
GTGACATTATTTGCAGGGGT+CGG + Chr6:35256879-35256898 MsG0680032157.01.T01:intron 45.0%
GTTAACTCACCCCAACAAAG+TGG + Chr6:35251061-35251080 MsG0680032157.01.T01:intron 45.0%
TCTCACTCGAGTCAGATTCT+TGG + Chr6:35252103-35252122 MsG0680032157.01.T01:intron 45.0%
TCTCATACTGGATGAGAGCT+TGG - Chr6:35257760-35257779 None:intergenic 45.0%
TCTCTGCAATCCCACTTTGT+TGG - Chr6:35251075-35251094 None:intergenic 45.0%
TCTGCAATCCCACTTTGTTG+GGG - Chr6:35251073-35251092 None:intergenic 45.0%
TCTTGACTGAGCTGAGGAAT+AGG - Chr6:35251836-35251855 None:intergenic 45.0%
TGACATTATTTGCAGGGGTC+GGG + Chr6:35256880-35256899 MsG0680032157.01.T01:intron 45.0%
TGTTAATCGCGTTGGATGAG+CGG - Chr6:35253625-35253644 None:intergenic 45.0%
TTCGTCCAAGTAGGCAAAGA+TGG - Chr6:35253496-35253515 None:intergenic 45.0%
TTCTTCATAAGCCGCCACAA+TGG + Chr6:35255840-35255859 MsG0680032157.01.T01:intron 45.0%
TTTCGGGAATGTGGTGAGTT+GGG - Chr6:35257392-35257411 None:intergenic 45.0%
! AATGATCATCTTTGGGGGAG+GGG - Chr6:35252475-35252494 None:intergenic 45.0%
! ACAGAGAACCACCGTGATTT+TGG - Chr6:35253583-35253602 None:intergenic 45.0%
! GGAAAGAGGGCTCCTTTTAT+AGG + Chr6:35256604-35256623 MsG0680032157.01.T01:intron 45.0%
! GTAATGATCATCTTTGGGGG+AGG - Chr6:35252477-35252496 None:intergenic 45.0%
! TGGTAATGATCATCTTCGGG+GGG + Chr6:35251482-35251501 MsG0680032157.01.T01:intron 45.0%
ACCTGGCTTCCTAAAGGCTA+TGG - Chr6:35251981-35252000 None:intergenic 50.0%
AGCCAGGTAGGTCATGTACT+AGG + Chr6:35251993-35252012 MsG0680032157.01.T01:intron 50.0%
AGTAAGCTTCCCACTGGAAC+AGG + Chr6:35254609-35254628 MsG0680032157.01.T01:intron 50.0%
CACTCTGACGAGTCTCATAC+TGG - Chr6:35257772-35257791 None:intergenic 50.0%
CCTGGCTTCCTAAAGGCTAT+GGG - Chr6:35251980-35251999 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - Chr6:35254083-35254102 None:intergenic 50.0%
GACATTATTTGCAGGGGTCG+GGG + Chr6:35256881-35256900 MsG0680032157.01.T01:intron 50.0%
GAGGGAGTAGCAGTAAATCC+AGG - Chr6:35257449-35257468 None:intergenic 50.0%
GATGAGCTGAGGGATGTTGA+AGG + Chr6:35253683-35253702 MsG0680032157.01.T01:intron 50.0%
GATGGCCCTTTGGCAAGAAT+TGG + Chr6:35250573-35250592 MsG0680032157.01.T01:five_prime_UTR 50.0%
GCATTGAGTAAGCTTCCCAC+TGG + Chr6:35254603-35254622 MsG0680032157.01.T01:intron 50.0%
GGATTTACTGCTACTCCCTC+TGG + Chr6:35257449-35257468 MsG0680032157.01.T01:intron 50.0%
GTGATGTTTGGGGGCCTAAT+CGG + Chr6:35250806-35250825 MsG0680032157.01.T01:intron 50.0%
GTTGCTTCAACCTAGTGGTG+TGG + Chr6:35257344-35257363 MsG0680032157.01.T01:intron 50.0%
TCAGATTCTTGGCTGAGCTG+AGG + Chr6:35252114-35252133 MsG0680032157.01.T01:intron 50.0%
TCCCGTAAGTGAAGCTCAGT+TGG + Chr6:35256847-35256866 MsG0680032157.01.T01:intron 50.0%
TCCTCGTTGCTTCAACCTAG+TGG + Chr6:35257339-35257358 MsG0680032157.01.T01:intron 50.0%
TGACCTACCTGGCTTCCTAA+AGG - Chr6:35251987-35252006 None:intergenic 50.0%
TGACGGAAAACATGGGCGAA+TGG + Chr6:35257619-35257638 MsG0680032157.01.T01:intron 50.0%
TTATCCCACTAAGTGGGGTC+GGG - Chr6:35254082-35254101 None:intergenic 50.0%
! ACCACTAGGTTGAAGCAACG+AGG - Chr6:35257343-35257362 None:intergenic 50.0%
! ATGATCATCTTTGGGGGAGG+GGG - Chr6:35252474-35252493 None:intergenic 50.0%
! GAAAGTCAACCGACTCAGAC+AGG + Chr6:35251869-35251888 MsG0680032157.01.T01:CDS 50.0%
! GAGAGTCAACTGACTCAGAC+AGG - Chr6:35252087-35252106 None:intergenic 50.0%
! TAGCCTTTAGGAAGCCAGGT+AGG + Chr6:35251981-35252000 MsG0680032157.01.T01:intron 50.0%
AACAACCTGCAGTGCACCTC+TGG - Chr6:35257804-35257823 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + Chr6:35254081-35254100 MsG0680032157.01.T01:intron 55.0%
CTTGGCTGAGCTGAGGAACA+GGG + Chr6:35252121-35252140 MsG0680032157.01.T01:intron 55.0%
GTTCGCAAAGCCACACCACT+AGG - Chr6:35257357-35257376 None:intergenic 55.0%
TCTTCCCGACCCCACTTAGT+GGG + Chr6:35254075-35254094 MsG0680032157.01.T01:intron 55.0%
TCTTGGCTGAGCTGAGGAAC+AGG + Chr6:35252120-35252139 MsG0680032157.01.T01:intron 55.0%
! CCCATAGCCTTTAGGAAGCC+AGG + Chr6:35251977-35251996 MsG0680032157.01.T01:CDS 55.0%
! TGATCATCTTTGGGGGAGGG+GGG - Chr6:35252473-35252492 None:intergenic 55.0%
CAGTGCACCTCTGGCAGTCA+CGG - Chr6:35257795-35257814 None:intergenic 60.0%
CTCTTCCCGACCCCACTTAG+TGG + Chr6:35254074-35254093 MsG0680032157.01.T01:intron 60.0%
CTGCGGGGTCCTGTTCCAGT+GGG - Chr6:35254621-35254640 None:intergenic 65.0%
TCTGCGGGGTCCTGTTCCAG+TGG - Chr6:35254622-35254641 None:intergenic 65.0%
! GACTGCCAGAGGTGCACTGC+AGG + Chr6:35257796-35257815 MsG0680032157.01.T01:CDS 65.0%
!! CAGAGTGCCGTGACTGCCAG+AGG + Chr6:35257785-35257804 MsG0680032157.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 35250397 35257829 35250397 ID=MsG0680032157.01;Name=MsG0680032157.01
Chr6 mRNA 35250397 35257829 35250397 ID=MsG0680032157.01.T01;Parent=MsG0680032157.01;Name=MsG0680032157.01.T01;_AED=0.47;_eAED=0.72;_QI=360|0|0|1|0.8|0.66|6|0|266
Chr6 exon 35250397 35250718 35250397 ID=MsG0680032157.01.T01:exon:19134;Parent=MsG0680032157.01.T01
Chr6 exon 35251603 35251998 35251603 ID=MsG0680032157.01.T01:exon:19135;Parent=MsG0680032157.01.T01
Chr6 exon 35254611 35254777 35254611 ID=MsG0680032157.01.T01:exon:19136;Parent=MsG0680032157.01.T01
Chr6 exon 35254908 35255030 35254908 ID=MsG0680032157.01.T01:exon:19137;Parent=MsG0680032157.01.T01
Chr6 exon 35255357 35255432 35255357 ID=MsG0680032157.01.T01:exon:19138;Parent=MsG0680032157.01.T01
Chr6 exon 35257753 35257829 35257753 ID=MsG0680032157.01.T01:exon:19139;Parent=MsG0680032157.01.T01
Chr6 five_prime_UTR 35250397 35250718 35250397 ID=MsG0680032157.01.T01:five_prime_utr;Parent=MsG0680032157.01.T01
Chr6 five_prime_UTR 35251603 35251640 35251603 ID=MsG0680032157.01.T01:five_prime_utr;Parent=MsG0680032157.01.T01
Chr6 CDS 35251641 35251998 35251641 ID=MsG0680032157.01.T01:cds;Parent=MsG0680032157.01.T01
Chr6 CDS 35254611 35254777 35254611 ID=MsG0680032157.01.T01:cds;Parent=MsG0680032157.01.T01
Chr6 CDS 35254908 35255030 35254908 ID=MsG0680032157.01.T01:cds;Parent=MsG0680032157.01.T01
Chr6 CDS 35255357 35255432 35255357 ID=MsG0680032157.01.T01:cds;Parent=MsG0680032157.01.T01
Chr6 CDS 35257753 35257829 35257753 ID=MsG0680032157.01.T01:cds;Parent=MsG0680032157.01.T01
Gene Sequence

>MsG0680032157.01.T01

ATGAGTAAGGATCAATCAGAGTTTGAGGCAACAAATCAAAACGAAGATCAAACAAATGTTTTTTCTGAAATTAATCAAAATGCACCACATAAAGATCCCTGTAATGAAACAAAAAAAAGATTTAAGGAAGGAAATCCAATTTGGAAAGGCAAAATTTATGCCAGAAGAAACAATGATCAAGTAGTAGAAGACCCTATTCCTCAGCTCAGTCAAGAATATGAAACGAGTGAAAGTCAACCGACTCAGACAGGTAAATCTCTCCTTGATCCTAATTCTCTATATACCGACCTTGATGTCCTCATAAAACTAAGGAAACAATATACTGATCTTAATGTTCCCATAGCCTTTAGGAAGCCAGTAAGCTTCCCACTGGAACAGGACCCCGCAGAAGATAAGAGATTGTGTGTTTTCTTATTTGAGAAGGCATTTAGTAAGCTTCCCACTGGGGAAGAGCAAATACTTGCAATATTTGATCTTAGAGGTTTTGGTCCAGAAAATGCTGATCTTAAATACTTGAAATTATTGTTTGACGTGTTCTACTATTACTATCCAAATCGATTGTCTCAAGTATTATTTGTGGATGCTCCTGCTGTGTTTAAGCCATTTTGGCGGCTTATGAAGAAGTTGTTAAAATCACATGCTTCTCAGGTTAAATTTTGCTCTGCAGAAACTCTCAAGAAGGACTATTTTACAGATGAAACTTTGCCACCAAACTTTAACGTTTGCTTCCAAGCTCTCATCCAGTATGAGACTCGTCAGAGTGCCGTGACTGCCAGAGGTGCACTGCAGGTTGTTTTGTGA

Protein sequence

>MsG0680032157.01.T01

MSKDQSEFEATNQNEDQTNVFSEINQNAPHKDPCNETKKRFKEGNPIWKGKIYARRNNDQVVEDPIPQLSQEYETSESQPTQTGKSLLDPNSLYTDLDVLIKLRKQYTDLNVPIAFRKPVSFPLEQDPAEDKRLCVFLFEKAFSKLPTGEEQILAIFDLRGFGPENADLKYLKLLFDVFYYYYPNRLSQVLFVDAPAVFKPFWRLMKKLLKSHASQVKFCSAETLKKDYFTDETLPPNFNVCFQALIQYETRQSAVTARGALQVVL*