AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018432.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018432.01.T01 MTR_4g011620 66.986 209 18 3 195 352 1079 1287 2.13e-79 266
MsG0480018432.01.T01 MTR_4g011620 45.902 183 37 4 38 158 692 874 4.63e-33 132
MsG0480018432.01.T01 MTR_4g011640 52.083 240 64 3 166 354 1057 1296 1.57e-66 229
MsG0480018432.01.T01 MTR_4g011640 37.778 180 53 3 38 158 702 881 5.20e-23 102
MsG0480018432.01.T01 MTR_4g011630 57.346 211 39 2 195 354 1089 1299 6.18e-66 228
MsG0480018432.01.T01 MTR_4g011630 37.569 181 53 3 38 158 704 884 5.70e-23 102
MsG0480018432.01.T01 MTR_2g102640 55.714 210 42 3 195 353 1081 1290 1.71e-64 224
MsG0480018432.01.T01 MTR_2g102660 55.238 210 43 3 195 353 1078 1287 3.29e-63 220
MsG0480018432.01.T01 MTR_2g102670 54.762 210 44 3 195 353 1061 1270 3.78e-63 220
MsG0480018432.01.T01 MTR_2g102670 36.158 177 57 4 38 158 680 856 7.16e-20 92.8
MsG0480018432.01.T01 MTR_7g098760 47.619 210 59 3 196 354 1104 1313 1.08e-51 186
MsG0480018432.01.T01 MTR_7g407080 44.550 211 66 2 196 355 303 513 1.48e-51 182
MsG0480018432.01.T01 MTR_7g098320 46.411 209 61 3 196 353 1099 1307 9.72e-51 184
MsG0480018432.01.T01 MTR_7g098300 47.059 204 61 3 196 352 1103 1306 2.49e-50 182
MsG0480018432.01.T01 MTR_7g098370 45.192 208 63 3 196 352 1065 1272 3.02e-50 182
MsG0480018432.01.T01 MTR_7g098370 37.126 167 59 4 38 158 693 859 4.08e-20 93.2
MsG0480018432.01.T01 MTR_7g098740 47.368 209 59 3 196 353 1065 1273 3.66e-50 182
MsG0480018432.01.T01 MTR_7g098740 33.533 167 65 4 38 158 693 859 8.00e-17 83.2
MsG0480018432.01.T01 MTR_7g098750 43.363 226 77 2 178 352 1089 1314 8.43e-50 181
MsG0480018432.01.T01 MTR_7g098750 43.363 226 77 2 178 352 1089 1314 9.49e-50 181
MsG0480018432.01.T01 MTR_7g098750 43.363 226 77 2 178 352 819 1044 1.28e-49 180
MsG0480018432.01.T01 MTR_1g011650 47.393 211 60 3 195 354 1100 1310 1.65e-49 180
MsG0480018432.01.T01 MTR_3g107870 47.115 208 59 3 196 352 1114 1321 3.79e-47 173
MsG0480018432.01.T01 MTR_7g098780 41.148 209 72 3 196 353 1069 1277 4.78e-45 167
MsG0480018432.01.T01 MTR_1g011640 44.019 209 66 3 195 352 1077 1285 4.22e-44 164
MsG0480018432.01.T01 MTR_7g098800 41.827 208 70 2 196 352 1027 1234 1.80e-43 162
MsG0480018432.01.T01 MTR_7g098800 39.241 158 59 3 38 158 664 821 5.12e-21 96.3
MsG0480018432.01.T01 MTR_7g098320 53.147 143 52 2 196 323 1099 1241 2.18e-41 156
MsG0480018432.01.T01 MTR_1g050525 36.842 228 93 3 178 354 1100 1327 1.97e-38 147
MsG0480018432.01.T01 MTR_7g098890 39.904 208 74 3 196 352 1007 1214 5.58e-38 146
MsG0480018432.01.T01 MTR_7g098890 33.854 192 73 7 19 158 613 802 1.44e-15 79.3
MsG0480018432.01.T01 MTR_7g104100 35.683 227 95 3 178 353 1087 1313 6.56e-38 146
MsG0480018432.01.T01 MTR_4g113070 37.885 227 90 3 178 353 1050 1276 7.43e-38 146
MsG0480018432.01.T01 MTR_7g104110 39.234 209 76 3 196 353 1099 1307 1.60e-36 142
MsG0480018432.01.T01 MTR_7g104130 39.048 210 77 2 195 353 1106 1315 2.11e-36 142
MsG0480018432.01.T01 MTR_7g104130 39.048 210 77 2 195 353 1106 1315 2.99e-36 141
MsG0480018432.01.T01 MTR_1g492950 32.599 227 102 3 178 353 1100 1326 2.39e-35 139
MsG0480018432.01.T01 MTR_2g101090 36.842 209 81 3 195 352 1094 1302 7.06e-35 137
MsG0480018432.01.T01 MTR_4g123850 36.967 211 82 4 195 354 1081 1291 9.10e-34 134
MsG0480018432.01.T01 MTR_8g014360 34.956 226 96 3 178 352 1111 1336 1.45e-33 133
MsG0480018432.01.T01 MTR_7g104150 37.441 211 81 3 195 354 1106 1316 5.73e-33 132
MsG0480018432.01.T01 MTR_8g014360 38.750 160 83 2 178 322 1111 1270 1.13e-27 116
MsG0480018432.01.T01 MTR_5g070320 33.186 226 100 3 178 352 1064 1289 3.07e-27 114
MsG0480018432.01.T01 MTR_5g070320 33.186 226 100 3 178 352 873 1098 3.17e-27 114
MsG0480018432.01.T01 MTR_5g070320 33.186 226 100 3 178 352 777 1002 3.20e-27 114
MsG0480018432.01.T01 MTR_3g463680 30.263 228 108 3 178 354 1049 1276 6.75e-24 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018432.01.T01 AT1G15520 51.659 211 51 3 195 354 1075 1285 4.09e-59 208
MsG0480018432.01.T01 AT1G15520 60.140 143 42 2 195 322 1075 1217 3.43e-48 176
MsG0480018432.01.T01 AT2G26910 40.088 227 85 3 178 353 1051 1277 5.57e-41 155
MsG0480018432.01.T01 AT1G66950 37.885 227 90 3 178 353 1086 1312 4.69e-40 152
MsG0480018432.01.T01 AT2G36380 36.404 228 94 3 178 354 1085 1312 4.22e-37 144
MsG0480018432.01.T01 AT3G30842 37.559 213 82 3 196 357 1072 1284 8.98e-37 143
MsG0480018432.01.T01 AT3G16340 35.088 228 97 3 178 354 1042 1269 3.16e-36 141
MsG0480018432.01.T01 AT3G16340 35.088 228 97 3 178 354 1047 1274 3.54e-36 141
MsG0480018432.01.T01 AT1G59870 36.493 211 83 3 195 354 1117 1327 9.93e-35 137
MsG0480018432.01.T01 AT1G15210 35.849 212 83 3 195 354 1090 1300 5.20e-33 132
MsG0480018432.01.T01 AT2G29940 35.242 227 96 3 178 353 1059 1285 2.35e-31 127
MsG0480018432.01.T01 AT4G15233 30.660 212 96 3 194 354 1023 1234 3.43e-26 111
MsG0480018432.01.T01 AT4G15233 30.660 212 96 3 194 354 979 1190 3.59e-26 111
MsG0480018432.01.T01 AT4G15233 30.660 212 96 3 194 354 979 1190 3.59e-26 111
MsG0480018432.01.T01 AT4G15233 30.660 212 96 3 194 354 1041 1252 3.60e-26 111
MsG0480018432.01.T01 AT4G15233 30.660 212 96 3 194 354 1032 1243 3.73e-26 111
MsG0480018432.01.T01 AT4G15233 30.660 212 96 3 194 354 1041 1252 3.77e-26 111
MsG0480018432.01.T01 AT4G15233 30.660 212 96 3 194 354 898 1109 4.65e-26 111
MsG0480018432.01.T01 AT4G15233 30.660 212 96 3 194 354 898 1109 4.65e-26 111
MsG0480018432.01.T01 AT4G15236 30.660 212 96 3 194 354 1039 1250 7.04e-25 107
MsG0480018432.01.T01 AT4G15230 31.754 211 93 3 195 354 1050 1260 9.67e-25 107
MsG0480018432.01.T01 AT4G15230 31.754 211 93 3 195 354 1050 1260 1.37e-24 107
MsG0480018432.01.T01 AT4G15230 31.754 211 93 3 195 354 1050 1260 1.37e-24 107
MsG0480018432.01.T01 AT4G15230 31.754 211 93 3 195 354 971 1181 1.62e-24 106
MsG0480018432.01.T01 AT2G37280 28.507 221 100 4 195 357 1063 1283 3.27e-24 105
MsG0480018432.01.T01 AT2G37280 28.507 221 100 4 195 357 1063 1283 4.10e-24 105
MsG0480018432.01.T01 AT2G37280 28.507 221 100 4 195 357 1092 1312 4.52e-24 105
MsG0480018432.01.T01 AT2G37280 28.507 221 100 4 195 357 905 1125 5.04e-24 105
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1047 1257 1.21e-22 101
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1044 1254 1.23e-22 100
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1044 1254 1.23e-22 100
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1044 1254 1.23e-22 100
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1044 1254 1.23e-22 100
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1044 1254 1.23e-22 100
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1040 1250 1.25e-22 100
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1037 1247 1.28e-22 100
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1037 1247 1.28e-22 100
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1037 1247 1.28e-22 100
MsG0480018432.01.T01 AT4G15215 31.280 211 94 3 195 354 1037 1247 1.28e-22 100
MsG0480018432.01.T01 AT3G53480 25.792 221 106 4 195 357 1100 1320 6.73e-19 89.7

Find 86 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGTAAATACTAACCTTTC+TGG 0.218295 4:-4806352 None:intergenic
TAGGGGTGTTTCAGGGTTAC+TGG 0.236245 4:+4804845 MsG0480018432.01.T01:CDS
TCGTCAAATGTGATAGAATA+TGG 0.244030 4:-4805616 None:intergenic
CCATTGACGTGTACTTTATA+TGG 0.264553 4:-4804697 None:intergenic
TAAGCAACTTATAGCAGAAT+TGG 0.264657 4:+4807685 MsG0480018432.01.T01:CDS
CCCAGTGTCACGTTTGAATA+TGG 0.281077 4:-4804993 None:intergenic
TGATGTTTGGAACAATGTTT+TGG 0.288482 4:+4807867 MsG0480018432.01.T01:CDS
TCACTTCTAACATCCATTGC+TGG 0.300948 4:-4807475 None:intergenic
ATTCAGCTTGGCTTCGTTAC+CGG 0.303446 4:+4806315 MsG0480018432.01.T01:intron
GGTACTATTTCTGAGTTATC+AGG 0.305127 4:+4804718 MsG0480018432.01.T01:CDS
TGGTGTTCTGACAGCTTTGA+TGG 0.322298 4:+4806108 MsG0480018432.01.T01:CDS
GGACTGTAGCAAAATTCTTT+TGG 0.338721 4:+4808385 MsG0480018432.01.T01:CDS
GATTCTTCACACATGCATAT+TGG 0.356272 4:+4805039 MsG0480018432.01.T01:CDS
ATGAAGTGGCACGCAAGATT+TGG 0.360672 4:+4808803 MsG0480018432.01.T01:CDS
TCTATTGTCTAGAGTATTGA+AGG 0.370322 4:+4807424 MsG0480018432.01.T01:intron
GGAAACAACGTTGGTCATAT+TGG 0.374893 4:+4807792 MsG0480018432.01.T01:CDS
AGATGTTCATTGAGAAGTTA+TGG 0.383900 4:+4806678 MsG0480018432.01.T01:intron
ACTTTCATAGCATTGATGTT+TGG 0.386791 4:+4807854 MsG0480018432.01.T01:CDS
AATGTTTGTGCTAGAATATA+AGG 0.391373 4:-4808321 None:intergenic
TAATGGACATAGCGCAGATT+TGG 0.395558 4:+4808827 MsG0480018432.01.T01:CDS
GTATGCACAAAATGCTATAA+TGG 0.403214 4:+4804882 MsG0480018432.01.T01:CDS
ACCTAACAGCAGTGTATAAC+GGG 0.415693 4:-4807820 None:intergenic
GTAATAGTTTATGCCATGAT+TGG 0.417076 4:+4808354 MsG0480018432.01.T01:CDS
GTGATAGAATATGGTTCAAA+AGG 0.420083 4:-4805607 None:intergenic
ATCCGCTGAGGAACTCACTA+TGG 0.424353 4:+4806716 MsG0480018432.01.T01:CDS
ACCCGTTATACACTGCTGTT+AGG 0.425568 4:+4807819 MsG0480018432.01.T01:CDS
GAATTGGGTAAACCTGCTAT+TGG 0.438084 4:+4807701 MsG0480018432.01.T01:CDS
GGCACGCAAGATTTGGCTAA+TGG 0.440235 4:+4808810 MsG0480018432.01.T01:CDS
CATAGCGCAGATTTGGCATC+TGG 0.451980 4:+4808834 MsG0480018432.01.T01:CDS
CATAGATAAATTAGTGATGT+AGG 0.457284 4:+4808757 MsG0480018432.01.T01:intron
CACTTCTAACATCCATTGCT+GGG 0.459676 4:-4807474 None:intergenic
TGAAGATCAAGGTGTGATAG+AGG 0.464557 4:+4806042 MsG0480018432.01.T01:CDS
CCAGCACAAGAAGTTGCATT+AGG 0.475388 4:+4807503 MsG0480018432.01.T01:CDS
AAGCAACTTATAGCAGAATT+GGG 0.478082 4:+4807686 MsG0480018432.01.T01:CDS
ATTCTAGCCGTGGGATGAAA+GGG 0.479332 4:+4805573 MsG0480018432.01.T01:CDS
AACCTAACAGCAGTGTATAA+CGG 0.482748 4:-4807821 None:intergenic
GGTAGGGAAATAAAGATCCT+TGG 0.490494 4:-4807726 None:intergenic
TTCAATGCTTGGCTTGCTTG+TGG 0.494571 4:+4807771 MsG0480018432.01.T01:CDS
GCCATATTCAAACGTGACAC+TGG 0.495087 4:+4804992 MsG0480018432.01.T01:CDS
GGAACTCACTATGGTTTGCC+TGG 0.510405 4:+4806725 MsG0480018432.01.T01:CDS
AGATCCTTGGAACCAATAGC+AGG 0.511886 4:-4807713 None:intergenic
TTTCTAGTAGGGGTGTTTCA+GGG 0.511892 4:+4804838 MsG0480018432.01.T01:CDS
GACAAAGAAGCAGAAGTAGC+TGG 0.512925 4:+4804673 MsG0480018432.01.T01:CDS
CCTAATGCAACTTCTTGTGC+TGG 0.513595 4:-4807503 None:intergenic
CGAAGTTGATTCCACCAGAA+AGG 0.514287 4:+4806338 MsG0480018432.01.T01:CDS
CTAGCACAAACATTATCATA+TGG 0.514485 4:+4808330 MsG0480018432.01.T01:CDS
GATTCTAGCCGTGGGATGAA+AGG 0.518232 4:+4805572 MsG0480018432.01.T01:CDS
AATTAGTGATGTAGGAAGAC+TGG 0.518394 4:+4808765 MsG0480018432.01.T01:intron
GGTGTTCTGACAGCTTTGAT+GGG 0.519037 4:+4806109 MsG0480018432.01.T01:CDS
TTGAGCCCATCGCATTAGAC+AGG 0.522407 4:-4808049 None:intergenic
AATGATTGTGAGTATTGGGT+AGG 0.530062 4:-4807743 None:intergenic
ACACTCATGCTAGATATCCT+AGG 0.530465 4:+4804811 MsG0480018432.01.T01:intron
AGCGCAGATTTGGCATCTGG+TGG 0.535097 4:+4808837 MsG0480018432.01.T01:CDS
TCACTTACTATTTGCGTCCG+AGG 0.535807 4:-4807892 None:intergenic
GCGCAGATTTGGCATCTGGT+GGG 0.535919 4:+4808838 MsG0480018432.01.T01:CDS
CGCAGATTTGGCATCTGGTG+GGG 0.536682 4:+4808839 MsG0480018432.01.T01:CDS
ACCATTCCCCTTTCATCCCA+CGG 0.541752 4:-4805580 None:intergenic
ACTAGACCTGTCTAATGCGA+TGG 0.546208 4:+4808043 MsG0480018432.01.T01:CDS
CCATATAAAGTACACGTCAA+TGG 0.551769 4:+4804697 MsG0480018432.01.T01:CDS
GCTGTTGCTGATTCTAGCCG+TGG 0.556115 4:+4805563 MsG0480018432.01.T01:CDS
TAAACCTGCTATTGGTTCCA+AGG 0.556467 4:+4807709 MsG0480018432.01.T01:CDS
TCTGGTGGAATCAACTTCGC+CGG 0.559420 4:-4806334 None:intergenic
AGTCCACTCAAATCCAATCA+TGG 0.568515 4:-4808367 None:intergenic
CCATATTCAAACGTGACACT+GGG 0.569207 4:+4804993 MsG0480018432.01.T01:CDS
ATGATTGTGAGTATTGGGTA+GGG 0.569810 4:-4807742 None:intergenic
ATCAAAGCTGTCAGAACACC+AGG 0.582348 4:-4806106 None:intergenic
CTAGACCTGTCTAATGCGAT+GGG 0.583417 4:+4808044 MsG0480018432.01.T01:CDS
GGAGTAAGTAAAATAAACGA+TGG 0.584940 4:+4807445 MsG0480018432.01.T01:CDS
ATGCCATGATTGGATTTGAG+TGG 0.586359 4:+4808364 MsG0480018432.01.T01:CDS
GTTAGTGGTGCATTTAGACC+TGG 0.586426 4:+4806088 MsG0480018432.01.T01:CDS
TTTGTGGATTCCAGCACAAG+CGG 0.591608 4:+4808020 MsG0480018432.01.T01:intron
ACTGGCAGGAATGAAGATCA+AGG 0.600898 4:+4806031 MsG0480018432.01.T01:intron
GCCGTGGGATGAAAGGGGAA+TGG 0.603765 4:+4805579 MsG0480018432.01.T01:CDS
CGATGGATATAACCCAGCAA+TGG 0.606622 4:+4807462 MsG0480018432.01.T01:CDS
GTAAATACTAACCTTTCTGG+TGG 0.610964 4:-4806349 None:intergenic
GTTCAATGTTTGAAATCACG+TGG 0.611849 4:+4805017 MsG0480018432.01.T01:CDS
AAGCGACGAGTTCTACTCAT+GGG 0.620434 4:-4808902 None:intergenic
ATCAAGGTGTGATAGAGGAT+AGG 0.624188 4:+4806047 MsG0480018432.01.T01:CDS
CTTGCTTGTGGAAACAACGT+TGG 0.629960 4:+4807783 MsG0480018432.01.T01:CDS
AAAGCGACGAGTTCTACTCA+TGG 0.634919 4:-4808903 None:intergenic
TTCTAGCCGTGGGATGAAAG+GGG 0.648333 4:+4805574 MsG0480018432.01.T01:CDS
CTGTTGCTGATTCTAGCCGT+GGG 0.652494 4:+4805564 MsG0480018432.01.T01:CDS
TGCGCGTATTGAAGATGAAG+TGG 0.655115 4:+4808789 MsG0480018432.01.T01:CDS
CCCCTACTAGAAAATTACCT+AGG 0.671426 4:-4804828 None:intergenic
AACCATAGTGAGTTCCTCAG+CGG 0.709629 4:-4806718 None:intergenic
TAGTCGAGCTGAATCCGCTG+AGG 0.713338 4:+4806704 MsG0480018432.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAGAAAATTAGTAAA+TGG - Chr4:4807403-4807422 None:intergenic 10.0%
!! TAATATACAATACTATTATA+TGG + Chr4:4807574-4807593 MsG0480018432.01.T01:intron 10.0%
!! AAAAAATGTAAAATAACGAT+TGG - Chr4:4805467-4805486 None:intergenic 15.0%
!! AAGTAAATAAATAAACCATA+AGG - Chr4:4808250-4808269 None:intergenic 15.0%
!! AGAATATATAGAAGTTATTA+TGG + Chr4:4808632-4808651 MsG0480018432.01.T01:intron 15.0%
!! ATTAGATAGAAAATAGTAAA+TGG - Chr4:4807205-4807224 None:intergenic 15.0%
!! ATTGTCATATTTATAGAATT+TGG - Chr4:4807924-4807943 None:intergenic 15.0%
!!! AAATAAATGTATTTTCCTTA+TGG + Chr4:4808232-4808251 MsG0480018432.01.T01:intron 15.0%
!! ACAGTTAAAAAAAACCTATT+AGG - Chr4:4805512-4805531 None:intergenic 20.0%
!! ATATATTTGAATCTTTGATG+AGG + Chr4:4806942-4806961 MsG0480018432.01.T01:intron 20.0%
!! ATCACTAATTTATCTATGTT+GGG - Chr4:4808755-4808774 None:intergenic 20.0%
!! CAAAAATTGAATTAACAATC+AGG + Chr4:4805292-4805311 MsG0480018432.01.T01:intron 20.0%
!! CTAATATTTAGAAACAGATT+TGG - Chr4:4805411-4805430 None:intergenic 20.0%
!! GATTCAAATATATCAATACT+TGG - Chr4:4806935-4806954 None:intergenic 20.0%
!! TAAAAATGATTGTGAGTATT+GGG - Chr4:4807750-4807769 None:intergenic 20.0%
!! TAATCTTCAAATACTAAGAT+AGG - Chr4:4806502-4806521 None:intergenic 20.0%
!! TATAAAATTCTGAGCTATAT+AGG + Chr4:4807545-4807564 MsG0480018432.01.T01:intron 20.0%
!! TATGTAAAAGGAAAATGATA+AGG - Chr4:4806386-4806405 None:intergenic 20.0%
!!! ACATTTTTTTAAGTGACTTA+TGG + Chr4:4805478-4805497 MsG0480018432.01.T01:intron 20.0%
!!! CAAACTTTATTTTCTGTTTT+TGG + Chr4:4806001-4806020 MsG0480018432.01.T01:intron 20.0%
!!! CAATTTTTGATTTCTATCAT+TGG - Chr4:4805281-4805300 None:intergenic 20.0%
!!! TTTAAAATTGTCACCAAATT+TGG - Chr4:4805439-4805458 None:intergenic 20.0%
!!! TTTCCATATTCAATGATTTT+AGG + Chr4:4806523-4806542 MsG0480018432.01.T01:intron 20.0%
! AAAACTAGTGGTTATATTGA+TGG + Chr4:4806179-4806198 MsG0480018432.01.T01:intron 25.0%
! AAACTAGTGGTTATATTGAT+GGG + Chr4:4806180-4806199 MsG0480018432.01.T01:intron 25.0%
! AATGTTTGTGCTAGAATATA+AGG - Chr4:4808324-4808343 None:intergenic 25.0%
! AATTCAAGTGGAAATCTAAA+CGG - Chr4:4807991-4808010 None:intergenic 25.0%
! ACAATACTATTATATGGATC+AGG + Chr4:4807580-4807599 MsG0480018432.01.T01:intron 25.0%
! AGACCTAAAATCATTGAATA+TGG - Chr4:4806529-4806548 None:intergenic 25.0%
! ATACTACTAACCCTTATTAA+AGG - Chr4:4806557-4806576 None:intergenic 25.0%
! ATATAACAGACATATGGAAA+TGG + Chr4:4808594-4808613 MsG0480018432.01.T01:intron 25.0%
! ATATATCAATACTTGGTTGA+TGG - Chr4:4806928-4806947 None:intergenic 25.0%
! CAATACTATTATATGGATCA+GGG + Chr4:4807581-4807600 MsG0480018432.01.T01:intron 25.0%
! CATAGATAAATTAGTGATGT+AGG + Chr4:4808757-4808776 MsG0480018432.01.T01:intron 25.0%
! CATATATCTTGACATAATGT+TGG + Chr4:4806445-4806464 MsG0480018432.01.T01:intron 25.0%
! CATCACTAATTTATCTATGT+TGG - Chr4:4808756-4808775 None:intergenic 25.0%
! CGAAGTTATTAATTAGCATT+TGG + Chr4:4805679-4805698 MsG0480018432.01.T01:intron 25.0%
! CTAAAAATGATTGTGAGTAT+TGG - Chr4:4807751-4807770 None:intergenic 25.0%
! CTAACACAAAAACCTTAAAA+AGG - Chr4:4806409-4806428 None:intergenic 25.0%
! TAGTGTATAAAAAGTTGTGA+AGG - Chr4:4805103-4805122 None:intergenic 25.0%
! TGAAAATTTATTTGCTCATG+TGG + Chr4:4806996-4807015 MsG0480018432.01.T01:intron 25.0%
! TTGGAAATATAACAGACATA+TGG + Chr4:4808588-4808607 MsG0480018432.01.T01:intron 25.0%
!! ACCTTAAAAAGGTATGTAAA+AGG - Chr4:4806398-4806417 None:intergenic 25.0%
!! GAAATATACCTTTTCGAAAA+GGG + Chr4:4808873-4808892 MsG0480018432.01.T01:CDS 25.0%
!! TCCTTTTACATACCTTTTTA+AGG + Chr4:4806394-4806413 MsG0480018432.01.T01:intron 25.0%
!! TGAAATATACCTTTTCGAAA+AGG + Chr4:4808872-4808891 MsG0480018432.01.T01:CDS 25.0%
!!! ATCATTTTTAGTTCAATGCT+TGG + Chr4:4807760-4807779 MsG0480018432.01.T01:CDS 25.0%
!!! CAAATGTTTCTTGCTTTTTA+GGG - Chr4:4806225-4806244 None:intergenic 25.0%
!!! TAGGTTTTTTTTAACTGTGT+TGG + Chr4:4805514-4805533 MsG0480018432.01.T01:intron 25.0%
!!! TTTTAAGGTTTTTGTGTTAG+AGG + Chr4:4806409-4806428 MsG0480018432.01.T01:intron 25.0%
AAGCAACTTATAGCAGAATT+GGG + Chr4:4807686-4807705 MsG0480018432.01.T01:CDS 30.0%
AATATTAGAGACGCCAAATT+TGG + Chr4:4805423-4805442 MsG0480018432.01.T01:intron 30.0%
ACAATAAAAGAAGAATCAGG+AGG + Chr4:4805245-4805264 MsG0480018432.01.T01:intron 30.0%
ACTGTTATACACTATTGTTC+AGG + Chr4:4807657-4807676 MsG0480018432.01.T01:intron 30.0%
AGATGTTCATTGAGAAGTTA+TGG + Chr4:4806678-4806697 MsG0480018432.01.T01:intron 30.0%
AGTTCGAAAGCTAGTTATTT+AGG - Chr4:4806618-4806637 None:intergenic 30.0%
ATAATGGTGAATGAATTCCT+TGG + Chr4:4804898-4804917 MsG0480018432.01.T01:intron 30.0%
ATTGAAATATTTGTGTGAGG+AGG - Chr4:4805335-4805354 None:intergenic 30.0%
CTAGCACAAACATTATCATA+TGG + Chr4:4808330-4808349 MsG0480018432.01.T01:CDS 30.0%
GCAACAATAAAAGAAGAATC+AGG + Chr4:4805242-4805261 MsG0480018432.01.T01:intron 30.0%
GCAGTAATCATATTCAGAAA+AGG + Chr4:4807629-4807648 MsG0480018432.01.T01:intron 30.0%
GGAGTAAGTAAAATAAACGA+TGG + Chr4:4807445-4807464 MsG0480018432.01.T01:CDS 30.0%
GGATTATTTGCATCACAATT+TGG + Chr4:4808569-4808588 MsG0480018432.01.T01:intron 30.0%
GTAATAGTTTATGCCATGAT+TGG + Chr4:4808354-4808373 MsG0480018432.01.T01:CDS 30.0%
GTATGCACAAAATGCTATAA+TGG + Chr4:4804882-4804901 MsG0480018432.01.T01:CDS 30.0%
GTGATAGAATATGGTTCAAA+AGG - Chr4:4805610-4805629 None:intergenic 30.0%
TAAGCAACTTATAGCAGAAT+TGG + Chr4:4807685-4807704 MsG0480018432.01.T01:CDS 30.0%
TAGCGATAGAAATTTAGAGA+CGG + Chr4:4805379-4805398 MsG0480018432.01.T01:intron 30.0%
TAGTTATTCTTGTTGAAGAG+TGG + Chr4:4807243-4807262 MsG0480018432.01.T01:intron 30.0%
TATAAAGATACTCACGATCA+AGG - Chr4:4805139-4805158 None:intergenic 30.0%
TCAATTGATCAAGTACTTTG+AGG + Chr4:4807110-4807129 MsG0480018432.01.T01:intron 30.0%
TCGTCAAATGTGATAGAATA+TGG - Chr4:4805619-4805638 None:intergenic 30.0%
TGATTAGAATAACGACCTAA+TGG - Chr4:4807093-4807112 None:intergenic 30.0%
TGCATTGAAATATTTGTGTG+AGG - Chr4:4805338-4805357 None:intergenic 30.0%
TTATGGCTTACTAACCTAAT+AGG + Chr4:4805495-4805514 MsG0480018432.01.T01:intron 30.0%
TTGACATTGTGGAAATTTCA+TGG + Chr4:4805762-4805781 MsG0480018432.01.T01:intron 30.0%
TTTCTGAATATGATTACTGC+AGG - Chr4:4807629-4807648 None:intergenic 30.0%
! AGGTCTTGTATCCTTTAATA+AGG + Chr4:4806543-4806562 MsG0480018432.01.T01:intron 30.0%
! GCATTTGGTTTAGATAATCA+AGG + Chr4:4805694-4805713 MsG0480018432.01.T01:intron 30.0%
! GCATTTTGTGCATACATTAA+AGG - Chr4:4804877-4804896 None:intergenic 30.0%
! GGTCTTGTATCCTTTAATAA+GGG + Chr4:4806544-4806563 MsG0480018432.01.T01:intron 30.0%
!! AACTACTTTGATGGATGTTT+TGG + Chr4:4806148-4806167 MsG0480018432.01.T01:intron 30.0%
!! ACTTTCATAGCATTGATGTT+TGG + Chr4:4807854-4807873 MsG0480018432.01.T01:CDS 30.0%
!! ATCCTAGGTAATTTTCTAGT+AGG + Chr4:4804826-4804845 MsG0480018432.01.T01:CDS 30.0%
!! GATGTTTGGAACAATGTTTT+GGG + Chr4:4807868-4807887 MsG0480018432.01.T01:CDS 30.0%
!! TCCTAGGTAATTTTCTAGTA+GGG + Chr4:4804827-4804846 MsG0480018432.01.T01:CDS 30.0%
!! TCTATTGTCTAGAGTATTGA+AGG + Chr4:4807424-4807443 MsG0480018432.01.T01:intron 30.0%
!! TGATGTTTGGAACAATGTTT+TGG + Chr4:4807867-4807886 MsG0480018432.01.T01:CDS 30.0%
!!! GCAAATGTTTCTTGCTTTTT+AGG - Chr4:4806226-4806245 None:intergenic 30.0%
!!! TCTGTTTTTGGAATTTCAAC+TGG + Chr4:4806013-4806032 MsG0480018432.01.T01:intron 30.0%
AACCTAACAGCAGTGTATAA+CGG - Chr4:4807824-4807843 None:intergenic 35.0%
AACTATTGCAGTCGAATTAG+TGG + Chr4:4806784-4806803 MsG0480018432.01.T01:intron 35.0%
AATGGTGATTCAAGAATGCA+TGG - Chr4:4807385-4807404 None:intergenic 35.0%
AATTAGTGATGTAGGAAGAC+TGG + Chr4:4808765-4808784 MsG0480018432.01.T01:intron 35.0%
ACTGCATCCTAACTATGATT+TGG - Chr4:4805807-4805826 None:intergenic 35.0%
AGAAGGTGAAGTAGCAAAAT+GGG - Chr4:4808444-4808463 None:intergenic 35.0%
ATGAATTCCTTGGAAACAGT+TGG + Chr4:4804908-4804927 MsG0480018432.01.T01:intron 35.0%
CCATATAAAGTACACGTCAA+TGG + Chr4:4804697-4804716 MsG0480018432.01.T01:CDS 35.0%
CCATGAAAATTATGGAGGAT+TGG - Chr4:4806810-4806829 None:intergenic 35.0%
CCATTGACGTGTACTTTATA+TGG - Chr4:4804700-4804719 None:intergenic 35.0%
CTAGTTATCTTGTTGAAGAG+TGG + Chr4:4807047-4807066 MsG0480018432.01.T01:intron 35.0%
CTGTGATCATACTAATGCAA+GGG - Chr4:4805913-4805932 None:intergenic 35.0%
CTTCGAAAATGACTTACTTG+TGG - Chr4:4805664-4805683 None:intergenic 35.0%
GAAATATATGTTGGGCCATT+AGG + Chr4:4807273-4807292 MsG0480018432.01.T01:intron 35.0%
GAGGACGAGAAATATATGTT+GGG + Chr4:4807265-4807284 MsG0480018432.01.T01:intron 35.0%
GATTCTTCACACATGCATAT+TGG + Chr4:4805039-4805058 MsG0480018432.01.T01:CDS 35.0%
GCAGTAAATACTAACCTTTC+TGG - Chr4:4806355-4806374 None:intergenic 35.0%
GGTGATTCAAGAATTATGCA+TGG - Chr4:4807184-4807203 None:intergenic 35.0%
GTAAATACTAACCTTTCTGG+TGG - Chr4:4806352-4806371 None:intergenic 35.0%
GTCTCAATTGTTTGACATTG+TGG + Chr4:4805751-4805770 MsG0480018432.01.T01:intron 35.0%
TAGAAGGTGAAGTAGCAAAA+TGG - Chr4:4808445-4808464 None:intergenic 35.0%
TCACACATGCATATTGGTAT+TGG + Chr4:4805045-4805064 MsG0480018432.01.T01:intron 35.0%
TCTAGCATCTAATCAGATGT+AGG - Chr4:4806838-4806857 None:intergenic 35.0%
TCTAGCATGAGTGTTAAACT+CGG - Chr4:4804805-4804824 None:intergenic 35.0%
TCTGTGATCATACTAATGCA+AGG - Chr4:4805914-4805933 None:intergenic 35.0%
TTATTCTTGTTGAAGAGTGG+AGG + Chr4:4807246-4807265 MsG0480018432.01.T01:intron 35.0%
TTTATAGAGAAAGAGCTGCT+GGG + Chr4:4808150-4808169 MsG0480018432.01.T01:intron 35.0%
! CATGCATATTGGTATTGGAT+AGG + Chr4:4805050-4805069 MsG0480018432.01.T01:intron 35.0%
! CCAATCCTCCATAATTTTCA+TGG + Chr4:4806807-4806826 MsG0480018432.01.T01:intron 35.0%
! GGACTGTAGCAAAATTCTTT+TGG + Chr4:4808385-4808404 MsG0480018432.01.T01:CDS 35.0%
! GTTCAATGTTTGAAATCACG+TGG + Chr4:4805017-4805036 MsG0480018432.01.T01:CDS 35.0%
! TATTGGTATTGGATAGGAGT+TGG + Chr4:4805056-4805075 MsG0480018432.01.T01:intron 35.0%
! TATTTCTGAGTTATCAGGTG+AGG + Chr4:4804723-4804742 MsG0480018432.01.T01:intron 35.0%
! TGATGGGAGCATAAAATTTC+TGG + Chr4:4806196-4806215 MsG0480018432.01.T01:intron 35.0%
! TTGAATTGTGATGCCTTTTG+TGG + Chr4:4808004-4808023 MsG0480018432.01.T01:intron 35.0%
! TTTTATAGAGAAAGAGCTGC+TGG + Chr4:4808149-4808168 MsG0480018432.01.T01:intron 35.0%
!! AAAAGGCATCACAATTCAAG+TGG - Chr4:4808003-4808022 None:intergenic 35.0%
!! AAGTACTTTGAGGTTGGATT+TGG + Chr4:4807120-4807139 MsG0480018432.01.T01:intron 35.0%
!! AATGATTGTGAGTATTGGGT+AGG - Chr4:4807746-4807765 None:intergenic 35.0%
!! ATAGGAGTTGGTGCATTAAT+AGG + Chr4:4805068-4805087 MsG0480018432.01.T01:intron 35.0%
!! ATCAATACTTGGTTGATGGA+TGG - Chr4:4806924-4806943 None:intergenic 35.0%
!! ATGATTGTGAGTATTGGGTA+GGG - Chr4:4807745-4807764 None:intergenic 35.0%
!! CCTAGGTAATTTTCTAGTAG+GGG + Chr4:4804828-4804847 MsG0480018432.01.T01:CDS 35.0%
!! GGTACTATTTCTGAGTTATC+AGG + Chr4:4804718-4804737 MsG0480018432.01.T01:CDS 35.0%
!! TTGATCAAGTACTTTGAGGT+TGG + Chr4:4807114-4807133 MsG0480018432.01.T01:intron 35.0%
!! TTTTGCTACTTCACCTTCTA+TGG + Chr4:4808445-4808464 MsG0480018432.01.T01:intron 35.0%
!!! ACACTGCTGTTTTCTTCATT+GGG + Chr4:4808075-4808094 MsG0480018432.01.T01:CDS 35.0%
!!! TACACTGCTGTTTTCTTCAT+TGG + Chr4:4808074-4808093 MsG0480018432.01.T01:CDS 35.0%
!!! TTTTTGGAATTTCAACTGGC+AGG + Chr4:4806017-4806036 MsG0480018432.01.T01:intron 35.0%
AACTCACTTTCTTCTGTCAC+AGG + Chr4:4808284-4808303 MsG0480018432.01.T01:intron 40.0%
AAGCCAAGCTGAATACAGTA+AGG - Chr4:4806309-4806328 None:intergenic 40.0%
ACACTCATGCTAGATATCCT+AGG + Chr4:4804811-4804830 MsG0480018432.01.T01:intron 40.0%
ACCTAACAGCAGTGTATAAC+GGG - Chr4:4807823-4807842 None:intergenic 40.0%
AGGCTCGTCCATGAAAATTA+TGG - Chr4:4806818-4806837 None:intergenic 40.0%
AGTCCACTCAAATCCAATCA+TGG - Chr4:4808370-4808389 None:intergenic 40.0%
AGTCCTTACTGTATTCAGCT+TGG + Chr4:4806303-4806322 MsG0480018432.01.T01:intron 40.0%
AGTTAACCTCTTGCGTTGTT+CGG - Chr4:4806768-4806787 None:intergenic 40.0%
ATCAAGGTGTGATAGAGGAT+AGG + Chr4:4806047-4806066 MsG0480018432.01.T01:CDS 40.0%
ATGAGTGTTAAACTCGGCAT+CGG - Chr4:4804799-4804818 None:intergenic 40.0%
ATGCCATGATTGGATTTGAG+TGG + Chr4:4808364-4808383 MsG0480018432.01.T01:CDS 40.0%
ATTACCTGTGCAAGTGCATA+GGG - Chr4:4808191-4808210 None:intergenic 40.0%
CAATTGTTATGCGAACCGTT+AGG + Chr4:4806865-4806884 MsG0480018432.01.T01:intron 40.0%
CACTTCTAACATCCATTGCT+GGG - Chr4:4807477-4807496 None:intergenic 40.0%
CCATATTCAAACGTGACACT+GGG + Chr4:4804993-4805012 MsG0480018432.01.T01:CDS 40.0%
CCCCTACTAGAAAATTACCT+AGG - Chr4:4804831-4804850 None:intergenic 40.0%
CTCGTCCATGAAAATTATGG+AGG - Chr4:4806815-4806834 None:intergenic 40.0%
CTTCACCTTCTATGGTATGA+TGG + Chr4:4808453-4808472 MsG0480018432.01.T01:intron 40.0%
CTTTGTTCCAACTGTTTCCA+AGG - Chr4:4804918-4804937 None:intergenic 40.0%
GAAACATTTGCCAGAATCTC+TGG + Chr4:4806235-4806254 MsG0480018432.01.T01:intron 40.0%
GAAGGTGAAGTAGCAAAATG+GGG - Chr4:4808443-4808462 None:intergenic 40.0%
GAATTGGGTAAACCTGCTAT+TGG + Chr4:4807701-4807720 MsG0480018432.01.T01:CDS 40.0%
GATGCGACCAAATCATAGTT+AGG + Chr4:4805797-4805816 MsG0480018432.01.T01:intron 40.0%
GGAAAATATGTTGGGCCATT+AGG + Chr4:4807075-4807094 MsG0480018432.01.T01:intron 40.0%
GGAAACAACGTTGGTCATAT+TGG + Chr4:4807792-4807811 MsG0480018432.01.T01:CDS 40.0%
GGAGGACGAGAAATATATGT+TGG + Chr4:4807264-4807283 MsG0480018432.01.T01:intron 40.0%
GGTAGGGAAATAAAGATCCT+TGG - Chr4:4807729-4807748 None:intergenic 40.0%
GTTATCTTGTTGAAGAGTGG+AGG + Chr4:4807050-4807069 MsG0480018432.01.T01:intron 40.0%
GTTCTTTCAACAGCTACTAC+TGG - Chr4:4808125-4808144 None:intergenic 40.0%
TATTACCTGTGCAAGTGCAT+AGG - Chr4:4808192-4808211 None:intergenic 40.0%
TCACTTCTAACATCCATTGC+TGG - Chr4:4807478-4807497 None:intergenic 40.0%
TGAAGATCAAGGTGTGATAG+AGG + Chr4:4806042-4806061 MsG0480018432.01.T01:CDS 40.0%
TGGAGGACGGAAAATATGTT+GGG + Chr4:4807067-4807086 MsG0480018432.01.T01:intron 40.0%
TTGACATCGGACTATAGTTG+CGG + Chr4:4805839-4805858 MsG0480018432.01.T01:intron 40.0%
TTTAACAGAGAATGCCAGTG+TGG + Chr4:4808495-4808514 MsG0480018432.01.T01:intron 40.0%
! GATAGGCTAGTGCTTTTGAA+GGG + Chr4:4806064-4806083 MsG0480018432.01.T01:CDS 40.0%
! TAATGGACATAGCGCAGATT+TGG + Chr4:4808827-4808846 MsG0480018432.01.T01:CDS 40.0%
!! GAGTTGGAGTTGGTACTATT+GGG + Chr4:4808520-4808539 MsG0480018432.01.T01:intron 40.0%
!! TAAACCTGCTATTGGTTCCA+AGG + Chr4:4807709-4807728 MsG0480018432.01.T01:CDS 40.0%
!! TTTCTAGTAGGGGTGTTTCA+GGG + Chr4:4804838-4804857 MsG0480018432.01.T01:CDS 40.0%
!!! ACTTTGATGGATGTTTTGGC+TGG + Chr4:4806152-4806171 MsG0480018432.01.T01:intron 40.0%
!!! CACTGCTGTTTTCTTCATTG+GGG + Chr4:4808076-4808095 MsG0480018432.01.T01:CDS 40.0%
!!! TTTTCTAGTAGGGGTGTTTC+AGG + Chr4:4804837-4804856 MsG0480018432.01.T01:CDS 40.0%
AACCATAGTGAGTTCCTCAG+CGG - Chr4:4806721-4806740 None:intergenic 45.0%
ACCCGTTATACACTGCTGTT+AGG + Chr4:4807819-4807838 MsG0480018432.01.T01:CDS 45.0%
ACTAGACCTGTCTAATGCGA+TGG + Chr4:4808043-4808062 MsG0480018432.01.T01:CDS 45.0%
ACTGGCAGGAATGAAGATCA+AGG + Chr4:4806031-4806050 MsG0480018432.01.T01:intron 45.0%
AGACAGTAACTTGAGGGAGT+GGG - Chr4:4806282-4806301 None:intergenic 45.0%
AGATCCTTGGAACCAATAGC+AGG - Chr4:4807716-4807735 None:intergenic 45.0%
AGGACTCAGACAGTAACTTG+AGG - Chr4:4806289-4806308 None:intergenic 45.0%
ATCAAAGCTGTCAGAACACC+AGG - Chr4:4806109-4806128 None:intergenic 45.0%
ATGAAGTGGCACGCAAGATT+TGG + Chr4:4808803-4808822 MsG0480018432.01.T01:CDS 45.0%
ATTCAGCTTGGCTTCGTTAC+CGG + Chr4:4806315-4806334 MsG0480018432.01.T01:intron 45.0%
ATTCTAGCCGTGGGATGAAA+GGG + Chr4:4805573-4805592 MsG0480018432.01.T01:CDS 45.0%
ATTGGGCAAATCCTGTAGCT+TGG + Chr4:4808537-4808556 MsG0480018432.01.T01:intron 45.0%
CACTGCCATCATACCATAGA+AGG - Chr4:4808461-4808480 None:intergenic 45.0%
CCAGCACAAGAAGTTGCATT+AGG + Chr4:4807503-4807522 MsG0480018432.01.T01:CDS 45.0%
CCATATAAGCTCCAAGCTAC+AGG - Chr4:4808551-4808570 None:intergenic 45.0%
CCCAGTGTCACGTTTGAATA+TGG - Chr4:4804996-4805015 None:intergenic 45.0%
CCTAATGCAACTTCTTGTGC+TGG - Chr4:4807506-4807525 None:intergenic 45.0%
CCTGTAGCTTGGAGCTTATA+TGG + Chr4:4808548-4808567 MsG0480018432.01.T01:intron 45.0%
CGATGGATATAACCCAGCAA+TGG + Chr4:4807462-4807481 MsG0480018432.01.T01:CDS 45.0%
CTAGACCTGTCTAATGCGAT+GGG + Chr4:4808044-4808063 MsG0480018432.01.T01:CDS 45.0%
CTCACAATAGCCAGAGATTC+TGG - Chr4:4806248-4806267 None:intergenic 45.0%
CTGTGTCAACGTGTTCCTAA+CGG - Chr4:4806883-4806902 None:intergenic 45.0%
CTTCTATGGTATGATGGCAG+TGG + Chr4:4808459-4808478 MsG0480018432.01.T01:intron 45.0%
CTTGCTTGTGGAAACAACGT+TGG + Chr4:4807783-4807802 MsG0480018432.01.T01:CDS 45.0%
CTTGTGCTGGAATCCACAAA+AGG - Chr4:4808020-4808039 None:intergenic 45.0%
GACAAAGAAGCAGAAGTAGC+TGG + Chr4:4804673-4804692 MsG0480018432.01.T01:CDS 45.0%
GCAACTATAGTCCGATGTCA+AGG - Chr4:4805840-4805859 None:intergenic 45.0%
GCCATATTCAAACGTGACAC+TGG + Chr4:4804992-4805011 MsG0480018432.01.T01:CDS 45.0%
GGACTCAGACAGTAACTTGA+GGG - Chr4:4806288-4806307 None:intergenic 45.0%
GGCTGGTACAACTACTTTGA+TGG + Chr4:4806139-4806158 MsG0480018432.01.T01:intron 45.0%
GTGGAGGACGGAAAATATGT+TGG + Chr4:4807066-4807085 MsG0480018432.01.T01:intron 45.0%
GTTAGTGGTGCATTTAGACC+TGG + Chr4:4806088-4806107 MsG0480018432.01.T01:CDS 45.0%
TCACTTACTATTTGCGTCCG+AGG - Chr4:4807895-4807914 None:intergenic 45.0%
TCCGCACAAAACCTTGACAT+CGG + Chr4:4805826-4805845 MsG0480018432.01.T01:intron 45.0%
TCTTGTTGAAGAGTGGAGGA+CGG + Chr4:4807054-4807073 MsG0480018432.01.T01:intron 45.0%
TGAGTGTTAAACTCGGCATC+GGG - Chr4:4804798-4804817 None:intergenic 45.0%
TGCGCGTATTGAAGATGAAG+TGG + Chr4:4808789-4808808 MsG0480018432.01.T01:CDS 45.0%
TTGGCTGGTAGGAAAACTAG+TGG + Chr4:4806167-4806186 MsG0480018432.01.T01:intron 45.0%
TTTCAACCGAACAACGCAAG+AGG + Chr4:4806759-4806778 MsG0480018432.01.T01:intron 45.0%
TTTGTGGATTCCAGCACAAG+CGG + Chr4:4808020-4808039 MsG0480018432.01.T01:intron 45.0%
! CGAAGTTGATTCCACCAGAA+AGG + Chr4:4806338-4806357 MsG0480018432.01.T01:CDS 45.0%
! GGATAGGCTAGTGCTTTTGA+AGG + Chr4:4806063-4806082 MsG0480018432.01.T01:CDS 45.0%
! GGCAGATTCCCTTTTCGAAA+AGG - Chr4:4808884-4808903 None:intergenic 45.0%
! GGTGTTCTGACAGCTTTGAT+GGG + Chr4:4806109-4806128 MsG0480018432.01.T01:CDS 45.0%
! GTTTCTGCAGCTGTGGTTTT+TGG + Chr4:4808676-4808695 MsG0480018432.01.T01:intron 45.0%
! TGGTGTTCTGACAGCTTTGA+TGG + Chr4:4806108-4806127 MsG0480018432.01.T01:CDS 45.0%
!! ACAGCTTTGATGGGTTAGTG+GGG + Chr4:4806118-4806137 MsG0480018432.01.T01:intron 45.0%
!! GACAGCTTTGATGGGTTAGT+GGG + Chr4:4806117-4806136 MsG0480018432.01.T01:intron 45.0%
!! GGAGTTGGAGTTGGTACTAT+TGG + Chr4:4808519-4808538 MsG0480018432.01.T01:intron 45.0%
!! GTGCTTTTGAAGGGAGTTAG+TGG + Chr4:4806073-4806092 MsG0480018432.01.T01:CDS 45.0%
!! TCCGATGTCAAGGTTTTGTG+CGG - Chr4:4805830-4805849 None:intergenic 45.0%
!! TGACAGCTTTGATGGGTTAG+TGG + Chr4:4806116-4806135 MsG0480018432.01.T01:intron 45.0%
!! TTCAATGCTTGGCTTGCTTG+TGG + Chr4:4807771-4807790 MsG0480018432.01.T01:CDS 45.0%
!!! GGAACAATGTTTTGGGACCT+CGG + Chr4:4807875-4807894 MsG0480018432.01.T01:CDS 45.0%
!!! TGATGGATGTTTTGGCTGGT+AGG + Chr4:4806156-4806175 MsG0480018432.01.T01:intron 45.0%
AACAGAGAATGCCAGTGTGG+TGG + Chr4:4808498-4808517 MsG0480018432.01.T01:intron 50.0%
AAGGGAATCTGCCCATGAGT+AGG + Chr4:4808891-4808910 MsG0480018432.01.T01:CDS 50.0%
ACCATTCCCCTTTCATCCCA+CGG - Chr4:4805583-4805602 None:intergenic 50.0%
ATCCGCTGAGGAACTCACTA+TGG + Chr4:4806716-4806735 MsG0480018432.01.T01:CDS 50.0%
CAGACAGTAACTTGAGGGAG+TGG - Chr4:4806283-4806302 None:intergenic 50.0%
CATAGCGCAGATTTGGCATC+TGG + Chr4:4808834-4808853 MsG0480018432.01.T01:CDS 50.0%
CGTTAGGAACACGTTGACAC+AGG + Chr4:4806881-4806900 MsG0480018432.01.T01:intron 50.0%
CTGTGCAAGTGCATAGGGTA+AGG - Chr4:4808186-4808205 None:intergenic 50.0%
CTTACCCTATGCACTTGCAC+AGG + Chr4:4808184-4808203 MsG0480018432.01.T01:intron 50.0%
GACAGTAACTTGAGGGAGTG+GGG - Chr4:4806281-4806300 None:intergenic 50.0%
GATTCTAGCCGTGGGATGAA+AGG + Chr4:4805572-4805591 MsG0480018432.01.T01:CDS 50.0%
GGAAATCTAAACGGCGCGTT+TGG - Chr4:4807982-4808001 None:intergenic 50.0%
GGCACGCAAGATTTGGCTAA+TGG + Chr4:4808810-4808829 MsG0480018432.01.T01:CDS 50.0%
TCTGGTGGAATCAACTTCGC+CGG - Chr4:4806337-4806356 None:intergenic 50.0%
TTCTAGCCGTGGGATGAAAG+GGG + Chr4:4805574-4805593 MsG0480018432.01.T01:CDS 50.0%
TTGAGCCCATCGCATTAGAC+AGG - Chr4:4808052-4808071 None:intergenic 50.0%
! AGCTACTACTGGTTGTACCG+CGG - Chr4:4808114-4808133 None:intergenic 50.0%
! GGAACTCACTATGGTTTGCC+TGG + Chr4:4806725-4806744 MsG0480018432.01.T01:CDS 50.0%
! TATGGTTTGCCTGGTGTGAG+CGG + Chr4:4806734-4806753 MsG0480018432.01.T01:intron 50.0%
! TGGGGTCTAAAATTCAGCCG+CGG + Chr4:4808094-4808113 MsG0480018432.01.T01:intron 50.0%
! TGTAGGTGTTTCTGCAGCTG+TGG + Chr4:4808669-4808688 MsG0480018432.01.T01:intron 50.0%
!! CTGTTGCTGATTCTAGCCGT+GGG + Chr4:4805564-4805583 MsG0480018432.01.T01:CDS 50.0%
!! TAGGGGTGTTTCAGGGTTAC+TGG + Chr4:4804845-4804864 MsG0480018432.01.T01:CDS 50.0%
AGCGCAGATTTGGCATCTGG+TGG + Chr4:4808837-4808856 MsG0480018432.01.T01:CDS 55.0%
CAACTCCAACTCCACCACAC+TGG - Chr4:4808512-4808531 None:intergenic 55.0%
CGCAGATTTGGCATCTGGTG+GGG + Chr4:4808839-4808858 MsG0480018432.01.T01:CDS 55.0%
GCGCAGATTTGGCATCTGGT+GGG + Chr4:4808838-4808857 MsG0480018432.01.T01:CDS 55.0%
GTTGAAAGACCGCTCACACC+AGG - Chr4:4806746-4806765 None:intergenic 55.0%
TAGTCGAGCTGAATCCGCTG+AGG + Chr4:4806704-4806723 MsG0480018432.01.T01:CDS 55.0%
TCGGACTATAGTTGCGGCTG+CGG + Chr4:4805845-4805864 MsG0480018432.01.T01:intron 55.0%
! CAGTGTGGTGGAGTTGGAGT+TGG + Chr4:4808510-4808529 MsG0480018432.01.T01:intron 55.0%
! GAATGCCAGTGTGGTGGAGT+TGG + Chr4:4808504-4808523 MsG0480018432.01.T01:intron 55.0%
!! CTTTGATGGGTTAGTGGGGC+TGG + Chr4:4806122-4806141 MsG0480018432.01.T01:intron 55.0%
!! GCTGTTGCTGATTCTAGCCG+TGG + Chr4:4805563-4805582 MsG0480018432.01.T01:CDS 55.0%
CAGGTCTAGTCCGCTTGTGC+TGG - Chr4:4808033-4808052 None:intergenic 60.0%
GCCGTGGGATGAAAGGGGAA+TGG + Chr4:4805579-4805598 MsG0480018432.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 4804664 4808912 4804664 ID=MsG0480018432.01;Name=MsG0480018432.01
Chr4 mRNA 4804664 4808912 4804664 ID=MsG0480018432.01.T01;Parent=MsG0480018432.01;Name=MsG0480018432.01.T01;_AED=0.53;_eAED=0.59;_QI=0|0|0|0.91|1|1|12|0|401
Chr4 exon 4804664 4804739 4804664 ID=MsG0480018432.01.T01:exon:1740;Parent=MsG0480018432.01.T01
Chr4 exon 4804824 4804903 4804824 ID=MsG0480018432.01.T01:exon:1741;Parent=MsG0480018432.01.T01
Chr4 exon 4804987 4805060 4804987 ID=MsG0480018432.01.T01:exon:1742;Parent=MsG0480018432.01.T01
Chr4 exon 4805517 4805666 4805517 ID=MsG0480018432.01.T01:exon:1743;Parent=MsG0480018432.01.T01
Chr4 exon 4806039 4806134 4806039 ID=MsG0480018432.01.T01:exon:1744;Parent=MsG0480018432.01.T01
Chr4 exon 4806321 4806359 4806321 ID=MsG0480018432.01.T01:exon:1745;Parent=MsG0480018432.01.T01
Chr4 exon 4806680 4806746 4806680 ID=MsG0480018432.01.T01:exon:1746;Parent=MsG0480018432.01.T01
Chr4 exon 4807436 4807524 4807436 ID=MsG0480018432.01.T01:exon:1747;Parent=MsG0480018432.01.T01
Chr4 exon 4807679 4807906 4807679 ID=MsG0480018432.01.T01:exon:1748;Parent=MsG0480018432.01.T01
Chr4 exon 4808034 4808097 4808034 ID=MsG0480018432.01.T01:exon:1749;Parent=MsG0480018432.01.T01
Chr4 exon 4808306 4808406 4808306 ID=MsG0480018432.01.T01:exon:1750;Parent=MsG0480018432.01.T01
Chr4 exon 4808771 4808912 4808771 ID=MsG0480018432.01.T01:exon:1751;Parent=MsG0480018432.01.T01
Chr4 CDS 4804664 4804739 4804664 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4804824 4804903 4804824 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4804987 4805060 4804987 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4805517 4805666 4805517 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4806039 4806134 4806039 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4806321 4806359 4806321 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4806680 4806746 4806680 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4807436 4807524 4807436 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4807679 4807906 4807679 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4808034 4808097 4808034 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4808306 4808406 4808306 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Chr4 CDS 4808771 4808912 4808771 ID=MsG0480018432.01.T01:cds;Parent=MsG0480018432.01.T01
Gene Sequence

>MsG0480018432.01.T01

ATGGTTCTTGACAAAGAAGCAGAAGTAGCTGGACCATATAAAGTACACGTCAATGGTACTATTTCTGAGTTATCAGATATCCTAGGTAATTTTCTAGTAGGGGTGTTTCAGGGTTACTGGATTTCACCTTTAATGTATGCACAAAATGCTATAATGATAACGCCATATTCAAACGTGACACTGGGAGTTCAATGTTTGAAATCACGTGGATTCTTCACACATGCATATTGGTTTTTTTTAACTGTGTTGGTTGTGCAAAATTCTAGAAGATCTACTGCTGTTGCTGATTCTAGCCGTGGGATGAAAGGGGAATGGTTCTACCTTTTGAACCATATTCTATCACATTTGACGAAATTGTATACTCTGTTGACATGCCACAAGAATGAAGATCAAGGTGTGATAGAGGATAGGCTAGTGCTTTTGAAGGGAGTTAGTGGTGCATTTAGACCTGGTGTTCTGACAGCTTTGATGGGTTACTTGGCTTCGTTACCGGCGAAGTTGATTCCACCAGAAAGATGTTCATTGAGAAGTTATGGAACTAGTCGAGCTGAATCCGCTGAGGAACTCACTATGGTTTGCCTGAGTATTGAAGGAGTAAGTAAAATAAACGATGGATATAACCCAGCAATGGATGTTAGAAGTGACAAGTCCAGCACAAGAAGTTGCATTAGGAGAAATAAGCAACTTATAGCAGAATTGGGTAAACCTGCTATTGGTTCCAAGGATCTTTATTTCCCTACCCAATACTCACAATCATTTTTAGTTCAATGCTTGGCTTGCTTGTGGAAACAACGTTGGTCATATTGGCGCAACCCGTTATACACTGCTGTTAGGTTTTACTTTGTTACTTTCATAGCATTGATGTTTGGAACAATGTTTTGGGACCTCGGACGCAAATACACAAGCGGACTAGACCTGTCTAATGCGATGGGCTCAATGTACACTGCTGTTTTCTTCATTGGGGTTTTAATAGAGCTACCTTATATTCTAGCACAAACATTATCATATGGTGTAATAGTTTATGCCATGATTGGATTTGAGTGGACTGTAGCAAAATTCTTTTGTGATGTAGGAAGACTGGCTGCGCGTATTGAAGATGAAGTGGCACGCAAGATTTGGCTAATGGACATAGCGCAGATTTGGCATCTGGTGGGGTCTAATGACTTGAAATATACCTTTTCGAAAAGGGAATCTGCCCATGAGTAG
Protein sequence

>MsG0480018432.01.T01

MVLDKEAEVAGPYKVHVNGTISELSDILGNFLVGVFQGYWISPLMYAQNAIMITPYSNVTLGVQCLKSRGFFTHAYWFFLTVLVVQNSRRSTAVADSSRGMKGEWFYLLNHILSHLTKLYTLLTCHKNEDQGVIEDRLVLLKGVSGAFRPGVLTALMGYLASLPAKLIPPERCSLRSYGTSRAESAEELTMVCLSIEGVSKINDGYNPAMDVRSDKSSTRSCIRRNKQLIAELGKPAIGSKDLYFPTQYSQSFLVQCLACLWKQRWSYWRNPLYTAVRFYFVTFIALMFGTMFWDLGRKYTSGLDLSNAMGSMYTAVFFIGVLIELPYILAQTLSYGVIVYAMIGFEWTVAKFFCDVGRLAARIEDEVARKIWLMDIAQIWHLVGSNDLKYTFSKRESAHE*