AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018596.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018596.01.T01 MTR_4g015120 97.125 487 14 0 14 500 29 515 0.0 974
MsG0480018596.01.T01 MTR_5g069680 74.127 487 122 3 15 500 33 516 0.0 754
MsG0480018596.01.T01 MTR_3g462760 73.868 486 124 2 15 500 32 514 0.0 748
MsG0480018596.01.T01 MTR_5g081810 66.397 494 159 5 15 507 5 492 0.0 693
MsG0480018596.01.T01 MTR_5g020600 61.066 488 187 2 14 500 39 524 0.0 635
MsG0480018596.01.T01 MTR_5g020620 61.020 490 185 4 12 500 35 519 0.0 627
MsG0480018596.01.T01 MTR_7g062310 61.492 496 178 4 18 500 56 551 0.0 617
MsG0480018596.01.T01 MTR_7g058690 58.954 497 190 4 18 500 42 538 0.0 605
MsG0480018596.01.T01 MTR_7g458880 57.948 497 195 4 18 500 42 538 0.0 599
MsG0480018596.01.T01 MTR_7g060460 57.430 498 197 4 18 500 42 539 0.0 591
MsG0480018596.01.T01 MTR_7g062250 55.668 494 208 5 18 500 43 536 0.0 568
MsG0480018596.01.T01 MTR_4g064530 55.040 496 213 5 19 505 54 548 0.0 563
MsG0480018596.01.T01 MTR_4g064530 55.397 491 209 5 19 500 54 543 0.0 560
MsG0480018596.01.T01 MTR_5g083360 50.000 500 232 6 15 500 30 525 1.54e-180 519
MsG0480018596.01.T01 MTR_3g071890 51.215 494 225 7 15 498 39 526 1.95e-179 516
MsG0480018596.01.T01 MTR_5g073210 51.186 506 229 8 7 500 19 518 3.16e-174 503
MsG0480018596.01.T01 MTR_2g008330 48.381 494 247 4 15 500 44 537 3.46e-167 485
MsG0480018596.01.T01 MTR_8g027375 46.351 507 252 7 6 500 31 529 6.68e-162 471
MsG0480018596.01.T01 MTR_3g101635 48.031 508 254 6 1 500 19 524 3.64e-159 464
MsG0480018596.01.T01 MTR_4g019225 47.465 493 244 4 22 500 39 530 2.06e-158 462
MsG0480018596.01.T01 MTR_3g101640 47.544 509 247 10 6 500 27 529 3.99e-155 454
MsG0480018596.01.T01 MTR_7g065970 45.419 513 264 5 2 500 18 528 9.18e-154 451
MsG0480018596.01.T01 MTR_7g065980 43.798 516 271 9 7 507 23 534 1.62e-150 442
MsG0480018596.01.T01 MTR_5g081790 58.484 277 107 5 233 506 157 428 4.00e-107 327
MsG0480018596.01.T01 MTR_5g081790 69.444 144 37 1 12 148 27 170 5.48e-68 225
MsG0480018596.01.T01 MTR_3g078740 31.619 525 293 19 24 500 41 547 2.16e-58 204
MsG0480018596.01.T01 MTR_3g078700 31.452 496 283 16 24 500 41 498 4.00e-57 199
MsG0480018596.01.T01 MTR_4g075690 29.684 475 295 12 30 500 51 490 7.37e-52 185
MsG0480018596.01.T01 MTR_3g115050 30.316 475 293 12 30 500 51 491 1.16e-51 184
MsG0480018596.01.T01 MTR_8g479390 29.363 487 295 14 23 500 45 491 2.08e-49 178
MsG0480018596.01.T01 MTR_3g008580 26.538 520 319 14 8 501 28 510 2.73e-49 179
MsG0480018596.01.T01 MTR_8g479380 28.247 485 289 13 30 500 50 489 6.66e-48 174
MsG0480018596.01.T01 MTR_5g018270 28.747 487 295 16 23 500 45 488 4.81e-47 172
MsG0480018596.01.T01 MTR_4g049390 28.542 480 295 14 30 500 48 488 5.26e-47 171
MsG0480018596.01.T01 MTR_1g026410 29.474 475 297 12 30 500 50 490 6.90e-47 171
MsG0480018596.01.T01 MTR_3g078730 28.514 498 295 13 24 500 40 497 1.13e-46 171
MsG0480018596.01.T01 MTR_1g090707 27.219 507 323 12 3 500 25 494 5.77e-46 169
MsG0480018596.01.T01 MTR_4g075690 29.234 431 267 11 30 456 51 447 8.48e-46 166
MsG0480018596.01.T01 MTR_2g088080 29.792 480 289 14 30 500 51 491 1.47e-45 167
MsG0480018596.01.T01 MTR_4g048350 27.766 479 299 15 30 500 48 487 4.13e-44 164
MsG0480018596.01.T01 MTR_4g101650 27.000 500 302 15 27 500 45 507 7.65e-44 164
MsG0480018596.01.T01 MTR_8g073840 47.126 174 53 3 15 187 36 171 1.22e-43 156
MsG0480018596.01.T01 MTR_4g132320 30.769 481 283 17 30 500 52 492 2.24e-40 153
MsG0480018596.01.T01 MTR_3g083450 25.780 481 328 14 23 500 40 494 3.36e-37 144
MsG0480018596.01.T01 MTR_4g083210 26.901 513 296 17 14 500 30 489 5.59e-37 144
MsG0480018596.01.T01 MTR_3g083400 25.880 483 325 15 23 500 39 493 1.18e-36 143
MsG0480018596.01.T01 MTR_3g083430 25.780 481 328 14 23 500 39 493 1.31e-36 142
MsG0480018596.01.T01 MTR_3g083440 25.880 483 325 15 23 500 39 493 1.64e-36 142
MsG0480018596.01.T01 MTR_3g083390 25.880 483 325 14 23 500 39 493 3.36e-36 141
MsG0480018596.01.T01 MTR_7g051440 26.411 496 316 17 23 500 43 507 4.58e-36 142
MsG0480018596.01.T01 MTR_7g058670 69.136 81 24 1 66 145 13 93 5.46e-36 129
MsG0480018596.01.T01 MTR_2g088080 29.279 444 266 14 66 500 6 410 1.26e-35 138
MsG0480018596.01.T01 MTR_3g083410 25.630 476 321 15 30 500 10 457 2.80e-35 138
MsG0480018596.01.T01 MTR_4g083190 26.033 484 315 15 27 500 45 495 6.22e-33 132
MsG0480018596.01.T01 MTR_8g091390 38.562 153 90 2 364 512 390 542 4.55e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018596.01.T01 AT2G38080 74.691 486 121 2 15 500 33 516 0.0 777
MsG0480018596.01.T01 AT5G01190 72.485 487 132 2 15 500 31 516 0.0 714
MsG0480018596.01.T01 AT5G01190 72.939 473 126 2 29 500 31 502 0.0 696
MsG0480018596.01.T01 AT5G58910 66.260 492 158 4 15 500 36 525 0.0 672
MsG0480018596.01.T01 AT5G58910 66.191 491 158 4 16 500 36 524 0.0 670
MsG0480018596.01.T01 AT5G58910 64.959 488 156 5 19 500 3 481 0.0 645
MsG0480018596.01.T01 AT5G03260 59.592 490 192 4 12 500 31 515 0.0 607
MsG0480018596.01.T01 AT5G60020 54.721 519 216 5 13 512 29 547 0.0 585
MsG0480018596.01.T01 AT5G60020 55.424 507 207 5 13 500 29 535 0.0 580
MsG0480018596.01.T01 AT5G60020 55.976 502 202 5 18 500 2 503 0.0 578
MsG0480018596.01.T01 AT2G29130 54.970 493 212 6 18 500 39 531 0.0 557
MsG0480018596.01.T01 AT5G05390 52.352 489 218 6 22 500 40 523 0.0 523
MsG0480018596.01.T01 AT2G30210 50.000 492 229 6 22 500 41 528 3.25e-175 505
MsG0480018596.01.T01 AT1G18140 49.109 505 232 8 18 500 38 539 1.37e-174 504
MsG0480018596.01.T01 AT2G40370 48.532 511 231 8 15 500 35 538 2.21e-171 496
MsG0480018596.01.T01 AT5G07130 50.499 501 216 9 22 500 37 527 9.07e-170 491
MsG0480018596.01.T01 AT5G09360 46.758 509 253 7 3 500 26 527 9.28e-163 474
MsG0480018596.01.T01 AT2G46570 46.029 491 247 6 21 500 44 527 1.63e-157 460
MsG0480018596.01.T01 AT3G09220 46.443 506 258 7 6 500 22 525 3.66e-153 449
MsG0480018596.01.T01 AT5G01050 45.580 509 255 8 7 500 25 526 4.78e-150 442
MsG0480018596.01.T01 AT5G01040 45.168 507 258 9 7 500 25 524 9.64e-149 438
MsG0480018596.01.T01 AT5G07130 50.442 452 192 9 71 500 1 442 2.22e-147 431
MsG0480018596.01.T01 AT5G07130 50.442 452 192 9 71 500 1 442 2.22e-147 431
MsG0480018596.01.T01 AT5G48100 44.715 492 256 10 21 500 34 521 2.71e-143 424
MsG0480018596.01.T01 AT2G46570 45.067 446 227 6 66 500 4 442 1.23e-136 404
MsG0480018596.01.T01 AT3G09220 46.387 429 218 6 82 500 2 428 7.27e-127 379
MsG0480018596.01.T01 AT4G39830 33.010 515 306 14 24 512 51 552 2.97e-74 246
MsG0480018596.01.T01 AT5G21105 31.818 506 298 12 24 501 53 539 1.28e-63 216
MsG0480018596.01.T01 AT5G21105 31.683 505 298 12 24 500 53 538 1.43e-62 215
MsG0480018596.01.T01 AT5G21100 31.703 511 287 18 24 500 39 521 7.05e-61 210
MsG0480018596.01.T01 AT4G39830 31.624 468 282 13 70 512 3 457 2.14e-54 191
MsG0480018596.01.T01 AT4G39830 31.613 465 280 13 73 512 4 455 1.43e-53 188
MsG0480018596.01.T01 AT4G39830 30.621 467 275 12 70 512 3 444 5.20e-51 181
MsG0480018596.01.T01 AT4G12420 26.070 514 319 13 12 500 28 505 1.92e-48 176
MsG0480018596.01.T01 AT4G12420 26.070 514 319 13 12 500 28 505 1.92e-48 176
MsG0480018596.01.T01 AT4G28090 28.333 480 299 14 30 500 49 492 8.13e-48 174
MsG0480018596.01.T01 AT4G25240 29.541 501 287 16 27 500 47 508 3.08e-47 173
MsG0480018596.01.T01 AT4G25240 29.541 501 287 16 27 500 47 508 3.08e-47 173
MsG0480018596.01.T01 AT1G75790 28.150 508 324 15 3 500 17 493 3.33e-47 172
MsG0480018596.01.T01 AT5G66920 28.659 492 283 16 27 500 55 496 3.71e-47 172
MsG0480018596.01.T01 AT1G21850 29.006 493 306 14 14 500 34 488 4.90e-47 172
MsG0480018596.01.T01 AT1G76160 28.931 477 296 13 30 500 49 488 5.78e-47 171
MsG0480018596.01.T01 AT4G22010 29.792 480 290 14 30 500 47 488 4.60e-46 169
MsG0480018596.01.T01 AT5G51480 27.146 501 300 15 27 500 46 508 4.63e-46 170
MsG0480018596.01.T01 AT5G48450 28.306 484 314 14 23 500 43 499 3.83e-45 167
MsG0480018596.01.T01 AT4G38420 27.432 514 313 14 14 507 35 508 4.03e-45 166
MsG0480018596.01.T01 AT4G37160 27.515 487 297 12 27 500 49 492 4.07e-45 166
MsG0480018596.01.T01 AT5G48450 28.306 484 314 14 23 500 43 499 6.16e-45 167
MsG0480018596.01.T01 AT1G41830 28.151 476 301 15 30 500 50 489 6.55e-45 166
MsG0480018596.01.T01 AT1G21860 27.586 493 313 13 14 500 34 488 7.54e-45 166
MsG0480018596.01.T01 AT2G23630 28.423 482 298 12 27 500 53 495 7.36e-43 160
MsG0480018596.01.T01 AT2G23630 28.216 482 299 12 27 500 48 490 8.54e-43 160
MsG0480018596.01.T01 AT4G38420 27.515 487 297 13 14 484 35 481 8.90e-43 159
MsG0480018596.01.T01 AT4G38420 27.093 454 286 11 14 456 35 454 1.14e-38 147
MsG0480018596.01.T01 AT4G37160 26.637 443 270 11 27 456 49 449 1.30e-37 144
MsG0480018596.01.T01 AT3G13390 28.157 483 307 18 27 500 46 497 2.56e-35 139
MsG0480018596.01.T01 AT1G55570 27.235 481 314 16 27 500 47 498 3.86e-34 135
MsG0480018596.01.T01 AT1G55560 25.934 482 318 15 27 500 44 494 1.58e-33 134
MsG0480018596.01.T01 AT3G13400 24.635 479 328 14 27 500 45 495 5.91e-30 123
MsG0480018596.01.T01 AT3G13400 24.635 479 328 14 27 500 45 495 5.91e-30 123
MsG0480018596.01.T01 AT5G21105 30.547 311 198 5 194 500 51 347 7.27e-29 118

Find 105 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCACAATTGTTTCAATT+TGG 0.198155 4:-7168192 None:intergenic
TCAACAAGGTTAAACTTCTT+TGG 0.219638 4:-7168883 None:intergenic
AAAGCAATTGTCACAGTTAA+TGG 0.227316 4:+7165782 MsG0480018596.01.T01:CDS
TTTGGCATGCACATGTTAAT+TGG 0.227901 4:+7166894 MsG0480018596.01.T01:CDS
AACATTAACTGGGTATTTCT+TGG 0.229766 4:-7168452 None:intergenic
TCAGATGCTCATACCATAAA+TGG 0.255242 4:+7167346 MsG0480018596.01.T01:CDS
ACATACAATTTCACCATTAC+TGG 0.266011 4:+7166854 MsG0480018596.01.T01:CDS
AATCATCCTGTTCATCTTCA+TGG 0.279496 4:+7168805 MsG0480018596.01.T01:CDS
TGTCCCAGGAAGACCATTTA+TGG 0.286955 4:-7167359 None:intergenic
GCCAGATGATGAATTGGTTT+TGG 0.300374 4:+7166985 MsG0480018596.01.T01:CDS
TTTCTTTGGTAAAATAACTA+TGG 0.303777 4:-7166939 None:intergenic
GTCAAAGAGGAACACTTCTT+TGG 0.310116 4:+7166876 MsG0480018596.01.T01:CDS
GGATAGGGAACACCTTTCTT+TGG 0.316191 4:-7166953 None:intergenic
CCAATTCATCATCTGGCTTT+GGG 0.320192 4:-7166979 None:intergenic
ACCAATTCATCATCTGGCTT+TGG 0.321201 4:-7166980 None:intergenic
CCCAAAGCCAGATGATGAAT+TGG 0.321450 4:+7166979 MsG0480018596.01.T01:CDS
CACAGTTAATGGGGAGTTCC+CGG 0.327050 4:+7165793 MsG0480018596.01.T01:CDS
TTATAAATATGAGGTGGATT+TGG 0.329000 4:-7168664 None:intergenic
GGTTTCAATTTCTTTGTTGT+TGG 0.348108 4:+7168826 MsG0480018596.01.T01:CDS
CAGCTTGTTATGCAAGATAC+TGG 0.352988 4:+7168766 MsG0480018596.01.T01:CDS
GCGACAGGTGCATCCATAAA+AGG 0.362293 4:-7168286 None:intergenic
AAGCAATTGTCACAGTTAAT+GGG 0.369198 4:+7165783 MsG0480018596.01.T01:CDS
ACTGCTACATTACATTATTC+AGG 0.375617 4:+7168328 MsG0480018596.01.T01:CDS
ATTTATAATTTCACTGGTGC+TGG 0.376600 4:+7168679 MsG0480018596.01.T01:CDS
TAACTATGTCCTGGTTGAAT+TGG 0.376716 4:-7166830 None:intergenic
ATCAATGAAGCTCTAAAATC+AGG 0.405686 4:+7167307 MsG0480018596.01.T01:CDS
GGAGGTGTAGTTAGAAATGT+TGG 0.405928 4:-7168370 None:intergenic
CCAATAGTGTTCCTTTCAAC+AGG 0.406648 4:-7168907 None:intergenic
CATACCATAAATGGTCTTCC+TGG 0.407581 4:+7167355 MsG0480018596.01.T01:CDS
CTTCTACTACTGTGAGTTTG+TGG 0.408210 4:-7168144 None:intergenic
AATACCTTGTGTAGAACAAT+TGG 0.408385 4:-7167386 None:intergenic
TTTGTTGTTGGTAAAGGAGT+TGG 0.409860 4:+7168838 MsG0480018596.01.T01:CDS
TTGAAACCATGAAGATGAAC+AGG 0.413774 4:-7168811 None:intergenic
AATTTCTTTGTTGTTGGTAA+AGG 0.416507 4:+7168832 MsG0480018596.01.T01:CDS
GAACAATTGGCCACTGTCCC+AGG 0.420964 4:-7167373 None:intergenic
ACCAAAACCAATTCATCATC+TGG 0.422160 4:-7166986 None:intergenic
AACTATGTCCTGGTTGAATT+GGG 0.424212 4:-7166829 None:intergenic
CGGGACCCACTCTTTATGCC+AGG 0.431604 4:+7165813 MsG0480018596.01.T01:CDS
ATGTTGGCAGGCATGGTATT+AGG 0.435889 4:+7166759 MsG0480018596.01.T01:intron
GCTTGAGCTTCAAGCTTCAA+TGG 0.437721 4:+7164502 MsG0480018596.01.T01:CDS
CCTCATATTTATAATTTCAC+TGG 0.464423 4:+7168673 MsG0480018596.01.T01:CDS
ATTGATGATTCTTAGCAAGT+AGG 0.466009 4:-7168083 None:intergenic
GGTATTAGGCAATTGAGAAC+AGG 0.474093 4:+7166773 MsG0480018596.01.T01:CDS
TAAATATGAGGTGGATTTGG+TGG 0.477812 4:-7168661 None:intergenic
GAGGTGTAGTTAGAAATGTT+GGG 0.483750 4:-7168369 None:intergenic
TTGAGAACAGGTTGGGCTGA+TGG 0.489336 4:+7166785 MsG0480018596.01.T01:CDS
TTGGTGTACCAGCTGGTGGA+TGG 0.490974 4:+7168926 MsG0480018596.01.T01:CDS
TAGGCAATTGAGAACAGGTT+GGG 0.493895 4:+7166778 MsG0480018596.01.T01:CDS
TGTTCCTCTTTGACCAGTAA+TGG 0.494174 4:-7166867 None:intergenic
AGATGAACAGGATGATTCTC+AGG 0.494262 4:-7168799 None:intergenic
TGGCATAAAGAGTGGGTCCC+GGG 0.497927 4:-7165811 None:intergenic
CCTTCATGTAAAGCTGCAAA+TGG 0.499621 4:+7168532 MsG0480018596.01.T01:CDS
CAAGCTTCAATGGCGGAAAA+CGG 0.500717 4:+7164512 MsG0480018596.01.T01:CDS
TACAAACTACCTGTGGATAG+TGG 0.502455 4:+7168055 MsG0480018596.01.T01:CDS
TCATCATCTGGCTTTGGGAA+AGG 0.504275 4:-7166974 None:intergenic
GTATGAGCATCTGAAACATT+TGG 0.509634 4:-7167337 None:intergenic
CCATTTGCAGCTTTACATGA+AGG 0.512374 4:-7168532 None:intergenic
ATCTGGCTTTGGGAAAGGAT+AGG 0.518016 4:-7166969 None:intergenic
ACAATTGTTTCAATTTGGAA+TGG 0.524020 4:-7168187 None:intergenic
GTTAAATTGTCTACAGCGAC+AGG 0.528787 4:-7168301 None:intergenic
TGAAGCTCTAAAATCAGGAT+TGG 0.528912 4:+7167312 MsG0480018596.01.T01:CDS
TCTGGCTTTGGGAAAGGATA+GGG 0.535295 4:-7166968 None:intergenic
AGTACATTTGTTGTTTGACC+AGG 0.537617 4:-7168217 None:intergenic
CCAGTGAAATTATAAATATG+AGG 0.540266 4:-7168673 None:intergenic
TTCACCATTACTGGTCAAAG+AGG 0.543070 4:+7166863 MsG0480018596.01.T01:CDS
CTGGCATAAAGAGTGGGTCC+CGG 0.543634 4:-7165812 None:intergenic
ACCACAATATTACCATCCAT+TGG 0.545580 4:+7165876 MsG0480018596.01.T01:CDS
ACAGTTAATGGGGAGTTCCC+GGG 0.550962 4:+7165794 MsG0480018596.01.T01:CDS
TGGTGTACCAGCTGGTGGAT+GGG 0.552498 4:+7168927 MsG0480018596.01.T01:CDS
AACACTATTGGTGTACCAGC+TGG 0.553147 4:+7168919 MsG0480018596.01.T01:CDS
CCTGTTGAAAGGAACACTAT+TGG 0.559502 4:+7168907 MsG0480018596.01.T01:CDS
AGATTCAGAGCTGATAATCC+AGG 0.563607 4:+7168958 MsG0480018596.01.T01:CDS
AAATGGTCTTCCTGGGACAG+TGG 0.566886 4:+7167363 MsG0480018596.01.T01:CDS
TCCTCCCTGGCATAAAGAGT+GGG 0.570395 4:-7165818 None:intergenic
ATACCATAAATGGTCTTCCT+GGG 0.571091 4:+7167356 MsG0480018596.01.T01:CDS
ACCTTGTTGATCCTGTTGAA+AGG 0.571542 4:+7168896 MsG0480018596.01.T01:CDS
TGGCTAAGATCAACTGTCCA+TGG 0.575480 4:+7166914 MsG0480018596.01.T01:CDS
ATTGCAACCCATCCACCAGC+TGG 0.580600 4:-7168934 None:intergenic
GGGACCCACTCTTTATGCCA+GGG 0.585095 4:+7165814 MsG0480018596.01.T01:CDS
GAAACAATTGTGATAGCACC+TGG 0.597555 4:+7168199 MsG0480018596.01.T01:CDS
ATCCTCCCTGGCATAAAGAG+TGG 0.601028 4:-7165819 None:intergenic
TTAATATTGAGTGCAGGTGG+TGG 0.601839 4:+7165730 MsG0480018596.01.T01:intron
CATCAATGCTGCACTCAATG+AGG 0.602948 4:+7168099 MsG0480018596.01.T01:CDS
TATGTTGTCTAACCAATGGA+TGG 0.606132 4:-7165888 None:intergenic
GCTTGTAGTAAAGCTGTAGT+TGG 0.610290 4:-7168598 None:intergenic
TTAGGCAATTGAGAACAGGT+TGG 0.615713 4:+7166777 MsG0480018596.01.T01:CDS
GAACACTACAAGTGGTACAA+AGG 0.618194 4:+7168714 MsG0480018596.01.T01:CDS
AGCAATTGTCACAGTTAATG+GGG 0.618895 4:+7165784 MsG0480018596.01.T01:CDS
TATCACTGTATCATCCTCCC+TGG 0.622357 4:-7165831 None:intergenic
GTGAAATTATAAATATGAGG+TGG 0.624519 4:-7168670 None:intergenic
TCCTTTCAACAGGATCAACA+AGG 0.625266 4:-7168897 None:intergenic
GGGCATTGTGTGATATATGC+AGG 0.628669 4:-7166809 None:intergenic
TTGTATGTATAACTATGTCC+TGG 0.632359 4:-7166839 None:intergenic
GCAGCTTTACATGAAGGACA+AGG 0.639189 4:-7168526 None:intergenic
ACCAATGGATGGTAATATTG+TGG 0.640439 4:-7165877 None:intergenic
TAATTAATATTGAGTGCAGG+TGG 0.645241 4:+7165727 MsG0480018596.01.T01:intron
GTAAAATAACTATGGCACCA+TGG 0.647215 4:-7166931 None:intergenic
ACACAATGCCCAATTCAACC+AGG 0.651958 4:+7166821 MsG0480018596.01.T01:CDS
TGAATAATGTAATGTAGCAG+TGG 0.657179 4:-7168326 None:intergenic
AGGTGTAGTTAGAAATGTTG+GGG 0.665714 4:-7168368 None:intergenic
TGAGCTTCAAGCTTCAATGG+CGG 0.684568 4:+7164505 MsG0480018596.01.T01:CDS
ACTATTGGTGTACCAGCTGG+TGG 0.693274 4:+7168922 MsG0480018596.01.T01:CDS
GTGGCCAATTGTTCTACACA+AGG 0.704099 4:+7167382 MsG0480018596.01.T01:CDS
AGATGTTTACAAACTACCTG+TGG 0.711627 4:+7168048 MsG0480018596.01.T01:intron
ACCCACTCTTTATGCCAGGG+AGG 0.713504 4:+7165817 MsG0480018596.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTATCAACAATAAAA+CGG - Chr4:7166034-7166053 None:intergenic 10.0%
!! AACCAATTAAATTTATTATT+TGG + Chr4:7165257-7165276 MsG0480018596.01.T01:intron 10.0%
!! TAAAAATAAAGTGAATTATT+TGG - Chr4:7166617-7166636 None:intergenic 10.0%
!!! CTTAATAAATAGAAAATTTT+AGG + Chr4:7167525-7167544 MsG0480018596.01.T01:intron 10.0%
!! ATAAAATAGTGAAATTTGAT+GGG - Chr4:7165384-7165403 None:intergenic 15.0%
!! CAATTAAATTTATTATTTGG+CGG + Chr4:7165260-7165279 MsG0480018596.01.T01:intron 15.0%
!! GCATATTTATATATGTATTA+GGG + Chr4:7164653-7164672 MsG0480018596.01.T01:intron 15.0%
!! TCTTGAATATGATTATTTAT+GGG + Chr4:7167584-7167603 MsG0480018596.01.T01:intron 15.0%
!! TGCATATTTATATATGTATT+AGG + Chr4:7164652-7164671 MsG0480018596.01.T01:intron 15.0%
!! TTATTATCATATGATTACTA+TGG - Chr4:7164683-7164702 None:intergenic 15.0%
!!! AAAAGTTTTTTCTTTTTAAG+GGG - Chr4:7166589-7166608 None:intergenic 15.0%
!!! AATTTTTTAAACTCACTTAA+AGG + Chr4:7168421-7168440 MsG0480018596.01.T01:CDS 15.0%
!!! ATTATCTATTTTTAGAGTAA+AGG - Chr4:7166661-7166680 None:intergenic 15.0%
!!! CAAAAGTTTTTTCTTTTTAA+GGG - Chr4:7166590-7166609 None:intergenic 15.0%
!!! GAATTAAATGTTTTGTTTAT+TGG + Chr4:7167187-7167206 MsG0480018596.01.T01:intron 15.0%
!!! GTATTTTATCCTTATAAATT+TGG - Chr4:7167704-7167723 None:intergenic 15.0%
!!! TATTTTATTGTTGTTAGAAT+AGG - Chr4:7167986-7168005 None:intergenic 15.0%
!!! TCAAAAGTTTTTTCTTTTTA+AGG - Chr4:7166591-7166610 None:intergenic 15.0%
!!! TCACTAAAAATTACTTTTTA+CGG + Chr4:7166496-7166515 MsG0480018596.01.T01:intron 15.0%
!!! TTAATAAAAGTTTTTGTGTT+TGG - Chr4:7167023-7167042 None:intergenic 15.0%
!!! TTAGAGATATTTTTTTTTGT+TGG - Chr4:7166323-7166342 None:intergenic 15.0%
!! AAAATATAATCTAAGCATGT+TGG + Chr4:7168000-7168019 MsG0480018596.01.T01:intron 20.0%
!! AGTATCTTAGAAGTTAAAAA+AGG - Chr4:7166099-7166118 None:intergenic 20.0%
!! ATTCTAATTCATGTTTATGA+TGG + Chr4:7167232-7167251 MsG0480018596.01.T01:intron 20.0%
!! CAAAATTCTCCAAATTTATA+AGG + Chr4:7167692-7167711 MsG0480018596.01.T01:intron 20.0%
!! CGCCAAATAATAAATTTAAT+TGG - Chr4:7165262-7165281 None:intergenic 20.0%
!! GATAAAATAGTGAAATTTGA+TGG - Chr4:7165385-7165404 None:intergenic 20.0%
!! GTCTTGAATATGATTATTTA+TGG + Chr4:7167583-7167602 MsG0480018596.01.T01:intron 20.0%
!! TAAAATTAGTTCATTCTATG+AGG - Chr4:7165704-7165723 None:intergenic 20.0%
!! TACAAATTTCATGTAAGTAA+TGG + Chr4:7165093-7165112 MsG0480018596.01.T01:intron 20.0%
!! TTACTCTATTATTACTAGTT+TGG + Chr4:7166634-7166653 MsG0480018596.01.T01:intron 20.0%
!! TTTCTTTGGTAAAATAACTA+TGG - Chr4:7166942-7166961 None:intergenic 20.0%
!!! ACATAATCTAGTTGTATTTT+TGG - Chr4:7165756-7165775 None:intergenic 20.0%
!!! ACTTGTTTTACTTCATAATA+TGG - Chr4:7164589-7164608 None:intergenic 20.0%
!!! AGAAAATAAGTATTTTTACC+TGG - Chr4:7168979-7168998 None:intergenic 20.0%
!!! ATAGTTATTTTACCAAAGAA+AGG + Chr4:7166941-7166960 MsG0480018596.01.T01:CDS 20.0%
!!! ATTTTTAAAGGAACATTAAC+TGG - Chr4:7168466-7168485 None:intergenic 20.0%
!!! CTAAATATTTTCCAGATTTT+TGG - Chr4:7168255-7168274 None:intergenic 20.0%
!!! TGATTAGATCTTTTTCTATA+TGG - Chr4:7166694-7166713 None:intergenic 20.0%
!!! TTTTTAAAGGAACATTAACT+GGG - Chr4:7168465-7168484 None:intergenic 20.0%
!!! TTTTTTTTACTGTTGGATTA+GGG + Chr4:7168497-7168516 MsG0480018596.01.T01:CDS 20.0%
! AATAGTGTGTAATTAAGGAA+AGG + Chr4:7165297-7165316 MsG0480018596.01.T01:intron 25.0%
! ACAATTGTTTCAATTTGGAA+TGG - Chr4:7168190-7168209 None:intergenic 25.0%
! ACTATGATCTTATATAAGTG+TGG + Chr4:7164899-7164918 MsG0480018596.01.T01:intron 25.0%
! AGATAAATAAGTGGAGAATT+TGG + Chr4:7166418-7166437 MsG0480018596.01.T01:intron 25.0%
! ATCCCTATGAAAAATTGAAA+AGG + Chr4:7167469-7167488 MsG0480018596.01.T01:intron 25.0%
! CATCTCTTAAGATAAATAAG+TGG + Chr4:7166409-7166428 MsG0480018596.01.T01:intron 25.0%
! CCAGTGAAATTATAAATATG+AGG - Chr4:7168676-7168695 None:intergenic 25.0%
! CCTCATATTTATAATTTCAC+TGG + Chr4:7168673-7168692 MsG0480018596.01.T01:CDS 25.0%
! CTATCACAATTGTTTCAATT+TGG - Chr4:7168195-7168214 None:intergenic 25.0%
! CTATGATCTTATATAAGTGT+GGG + Chr4:7164900-7164919 MsG0480018596.01.T01:intron 25.0%
! GTATAATTAATATTGAGTGC+AGG + Chr4:7165724-7165743 MsG0480018596.01.T01:intron 25.0%
! GTGAAATTATAAATATGAGG+TGG - Chr4:7168673-7168692 None:intergenic 25.0%
! TTAAAAGCAAACCAAAAATC+TGG + Chr4:7168241-7168260 MsG0480018596.01.T01:CDS 25.0%
! TTGAGTCATTATTATCATGT+TGG + Chr4:7166743-7166762 MsG0480018596.01.T01:intron 25.0%
!! ACACCTTTTCAATTTTTCAT+AGG - Chr4:7167475-7167494 None:intergenic 25.0%
!! ATCTTTTTCTATATGGTCAA+AGG - Chr4:7166687-7166706 None:intergenic 25.0%
!! CACCTTTTCAATTTTTCATA+GGG - Chr4:7167474-7167493 None:intergenic 25.0%
!! TTATAAATATGAGGTGGATT+TGG - Chr4:7168667-7168686 None:intergenic 25.0%
!! TTTTGATACATTATTCGTCA+AGG + Chr4:7167052-7167071 MsG0480018596.01.T01:intron 25.0%
!!! AATTTCTTTGTTGTTGGTAA+AGG + Chr4:7168832-7168851 MsG0480018596.01.T01:CDS 25.0%
!!! CATGTTGGTTTTTTCTTATT+TGG + Chr4:7168015-7168034 MsG0480018596.01.T01:intron 25.0%
!!! TTTTTTTACTGTTGGATTAG+GGG + Chr4:7168498-7168517 MsG0480018596.01.T01:CDS 25.0%
AAAAACTTGAACACTACAAG+TGG + Chr4:7168706-7168725 MsG0480018596.01.T01:CDS 30.0%
AAAGCAATTGTCACAGTTAA+TGG + Chr4:7165782-7165801 MsG0480018596.01.T01:CDS 30.0%
AACATTAACTGGGTATTTCT+TGG - Chr4:7168455-7168474 None:intergenic 30.0%
AAGCAATTGTCACAGTTAAT+GGG + Chr4:7165783-7165802 MsG0480018596.01.T01:CDS 30.0%
AATACCTTGTGTAGAACAAT+TGG - Chr4:7167389-7167408 None:intergenic 30.0%
ACATACAATTTCACCATTAC+TGG + Chr4:7166854-7166873 MsG0480018596.01.T01:CDS 30.0%
ACTGCTACATTACATTATTC+AGG + Chr4:7168328-7168347 MsG0480018596.01.T01:CDS 30.0%
AGAATATGTTGTCTAACCAA+TGG - Chr4:7165895-7165914 None:intergenic 30.0%
ATTGAAAAATTGTAGGAGAG+TGG + Chr4:7167260-7167279 MsG0480018596.01.T01:intron 30.0%
ATTTATAATTTCACTGGTGC+TGG + Chr4:7168679-7168698 MsG0480018596.01.T01:CDS 30.0%
CAGGTAATAGTGTGTAATTA+AGG + Chr4:7165292-7165311 MsG0480018596.01.T01:intron 30.0%
GACTCAAATTCATCGATAAA+TGG + Chr4:7167751-7167770 MsG0480018596.01.T01:intron 30.0%
GCATTGTATATTCAACAACT+AGG + Chr4:7167860-7167879 MsG0480018596.01.T01:intron 30.0%
GGTCTTTCAATAGCATAAAT+TGG + Chr4:7167208-7167227 MsG0480018596.01.T01:intron 30.0%
GGTGATGATTGAAAAATTGT+AGG + Chr4:7167253-7167272 MsG0480018596.01.T01:intron 30.0%
TAATTAATATTGAGTGCAGG+TGG + Chr4:7165727-7165746 MsG0480018596.01.T01:intron 30.0%
TCAACAAGGTTAAACTTCTT+TGG - Chr4:7168886-7168905 None:intergenic 30.0%
TGAATAATGTAATGTAGCAG+TGG - Chr4:7168329-7168348 None:intergenic 30.0%
TTATTATTTGGCGGAAATCA+AGG + Chr4:7165269-7165288 MsG0480018596.01.T01:intron 30.0%
TTGTATGTATAACTATGTCC+TGG - Chr4:7166842-7166861 None:intergenic 30.0%
! ACTAAAAGCACACTATTGTT+AGG + Chr4:7167638-7167657 MsG0480018596.01.T01:intron 30.0%
! ATTGATGATTCTTAGCAAGT+AGG - Chr4:7168086-7168105 None:intergenic 30.0%
! GAACTTTTCTTCAAAATAGC+TGG + Chr4:7168121-7168140 MsG0480018596.01.T01:CDS 30.0%
! GAATTTTCTTTTGCAACTTC+AGG - Chr4:7164958-7164977 None:intergenic 30.0%
! GCAATTTGTGTAGCATTTTT+AGG - Chr4:7168397-7168416 None:intergenic 30.0%
! GGTTTCAATTTCTTTGTTGT+TGG + Chr4:7168826-7168845 MsG0480018596.01.T01:CDS 30.0%
!! ATCAATGAAGCTCTAAAATC+AGG + Chr4:7167307-7167326 MsG0480018596.01.T01:CDS 30.0%
!! ATTTGTGTAGCATTTTTAGG+TGG - Chr4:7168394-7168413 None:intergenic 30.0%
!! CTTGTAGTGTTCAAGTTTTT+AGG - Chr4:7168706-7168725 None:intergenic 30.0%
!!! GATGAATTGGTTTTGGTATT+AGG + Chr4:7166992-7167011 MsG0480018596.01.T01:CDS 30.0%
!!! GTTTTTTCTTTTTAAGGGGT+TGG - Chr4:7166585-7166604 None:intergenic 30.0%
AAAACCCTAACTACTTTGCA+TGG + Chr4:7164711-7164730 MsG0480018596.01.T01:intron 35.0%
AACTATGTCCTGGTTGAATT+GGG - Chr4:7166832-7166851 None:intergenic 35.0%
AATCATCCTGTTCATCTTCA+TGG + Chr4:7168805-7168824 MsG0480018596.01.T01:CDS 35.0%
ACCAAAACCAATTCATCATC+TGG - Chr4:7166989-7167008 None:intergenic 35.0%
ACCAATGGATGGTAATATTG+TGG - Chr4:7165880-7165899 None:intergenic 35.0%
ACCACAATATTACCATCCAT+TGG + Chr4:7165876-7165895 MsG0480018596.01.T01:CDS 35.0%
AGATGTTTACAAACTACCTG+TGG + Chr4:7168048-7168067 MsG0480018596.01.T01:intron 35.0%
AGCAATTGTCACAGTTAATG+GGG + Chr4:7165784-7165803 MsG0480018596.01.T01:CDS 35.0%
AGGTGTAGTTAGAAATGTTG+GGG - Chr4:7168371-7168390 None:intergenic 35.0%
AGTGAGTGAAAATGGTTTCT+TGG + Chr4:7165007-7165026 MsG0480018596.01.T01:intron 35.0%
AGTTCCATGCAAAGTAGTTA+GGG - Chr4:7164718-7164737 None:intergenic 35.0%
ATACCATAAATGGTCTTCCT+GGG + Chr4:7167356-7167375 MsG0480018596.01.T01:CDS 35.0%
ATCGTCAGATCATTCAAAAC+AGG - Chr4:7167118-7167137 None:intergenic 35.0%
ATTATCAGAATGTGCATGTG+TGG - Chr4:7165676-7165695 None:intergenic 35.0%
CTATAATCAGCACCTAAAGT+TGG + Chr4:7165628-7165647 MsG0480018596.01.T01:intron 35.0%
GAGGTGTAGTTAGAAATGTT+GGG - Chr4:7168372-7168391 None:intergenic 35.0%
GATCTTATATAAGTGTGGGT+TGG + Chr4:7164904-7164923 MsG0480018596.01.T01:intron 35.0%
GTAAAATAACTATGGCACCA+TGG - Chr4:7166934-7166953 None:intergenic 35.0%
GTCATTATTATCATGTTGGC+AGG + Chr4:7166747-7166766 MsG0480018596.01.T01:intron 35.0%
TAACTATGTCCTGGTTGAAT+TGG - Chr4:7166833-7166852 None:intergenic 35.0%
TATGTTGTCTAACCAATGGA+TGG - Chr4:7165891-7165910 None:intergenic 35.0%
TCAGATGCTCATACCATAAA+TGG + Chr4:7167346-7167365 MsG0480018596.01.T01:CDS 35.0%
TCATTGGTGAATGCAACTTA+AGG + Chr4:7164931-7164950 MsG0480018596.01.T01:intron 35.0%
TTGAAACCATGAAGATGAAC+AGG - Chr4:7168814-7168833 None:intergenic 35.0%
TTGTTGCATATTTCCAGCTT+TGG + Chr4:7165050-7165069 MsG0480018596.01.T01:intron 35.0%
TTTGGCATGCACATGTTAAT+TGG + Chr4:7166894-7166913 MsG0480018596.01.T01:CDS 35.0%
! AGTCAGTGCTTCACTAATTT+TGG + Chr4:7166224-7166243 MsG0480018596.01.T01:intron 35.0%
! GTATGAGCATCTGAAACATT+TGG - Chr4:7167340-7167359 None:intergenic 35.0%
! TAAATATGAGGTGGATTTGG+TGG - Chr4:7168664-7168683 None:intergenic 35.0%
! TAGTGAGTCTTTTGCTTAGT+TGG - Chr4:7166482-7166501 None:intergenic 35.0%
!! ACTTTAGGTGCTGATTATAG+AGG - Chr4:7165628-7165647 None:intergenic 35.0%
!! AGTACATTTGTTGTTTGACC+AGG - Chr4:7168220-7168239 None:intergenic 35.0%
!! CTTTAGGTGCTGATTATAGA+GGG - Chr4:7165627-7165646 None:intergenic 35.0%
!! TGAAGCTCTAAAATCAGGAT+TGG + Chr4:7167312-7167331 MsG0480018596.01.T01:CDS 35.0%
!! TTTGTTGTTGGTAAAGGAGT+TGG + Chr4:7168838-7168857 MsG0480018596.01.T01:CDS 35.0%
ACCTTGTTGATCCTGTTGAA+AGG + Chr4:7168896-7168915 MsG0480018596.01.T01:CDS 40.0%
ACTGATGAGACAACAGTCAA+CGG + Chr4:7165505-7165524 MsG0480018596.01.T01:intron 40.0%
AGATGAACAGGATGATTCTC+AGG - Chr4:7168802-7168821 None:intergenic 40.0%
AGATTCAGAGCTGATAATCC+AGG + Chr4:7168958-7168977 MsG0480018596.01.T01:CDS 40.0%
AGCAAGCAATCACACAACAA+GGG - Chr4:7164770-7164789 None:intergenic 40.0%
AGGAGCGATTAACCAACTTT+AGG - Chr4:7165643-7165662 None:intergenic 40.0%
AGTGAGTGAGTGAGTGAAAA+TGG + Chr4:7164999-7165018 MsG0480018596.01.T01:intron 40.0%
CAAGGGTGAAGATAGTAACT+TGG - Chr4:7164753-7164772 None:intergenic 40.0%
CATACCATAAATGGTCTTCC+TGG + Chr4:7167355-7167374 MsG0480018596.01.T01:CDS 40.0%
CCAATAGTGTTCCTTTCAAC+AGG - Chr4:7168910-7168929 None:intergenic 40.0%
CCATTTGCAGCTTTACATGA+AGG - Chr4:7168535-7168554 None:intergenic 40.0%
CCTAACAAAGTAAAACGACG+TGG + Chr4:7164865-7164884 MsG0480018596.01.T01:intron 40.0%
CCTGTTGAAAGGAACACTAT+TGG + Chr4:7168907-7168926 MsG0480018596.01.T01:CDS 40.0%
CCTTCATGTAAAGCTGCAAA+TGG + Chr4:7168532-7168551 MsG0480018596.01.T01:CDS 40.0%
CTTCTACTACTGTGAGTTTG+TGG - Chr4:7168147-7168166 None:intergenic 40.0%
CTTTGTTAGGTGAGTGATAG+AGG - Chr4:7164855-7164874 None:intergenic 40.0%
GAAAAATTGTAGGAGAGTGG+TGG + Chr4:7167263-7167282 MsG0480018596.01.T01:intron 40.0%
GAAACAATTGTGATAGCACC+TGG + Chr4:7168199-7168218 MsG0480018596.01.T01:CDS 40.0%
GAACACTACAAGTGGTACAA+AGG + Chr4:7168714-7168733 MsG0480018596.01.T01:CDS 40.0%
GAGTTCCATGCAAAGTAGTT+AGG - Chr4:7164719-7164738 None:intergenic 40.0%
GCTTGTAGTAAAGCTGTAGT+TGG - Chr4:7168601-7168620 None:intergenic 40.0%
GGAAAGTCACTTAAACGTAG+CGG + Chr4:7167772-7167791 MsG0480018596.01.T01:intron 40.0%
GGTATTAGGCAATTGAGAAC+AGG + Chr4:7166773-7166792 MsG0480018596.01.T01:CDS 40.0%
GTCAAAGAGGAACACTTCTT+TGG + Chr4:7166876-7166895 MsG0480018596.01.T01:CDS 40.0%
GTTAAATTGTCTACAGCGAC+AGG - Chr4:7168304-7168323 None:intergenic 40.0%
TACAAACTACCTGTGGATAG+TGG + Chr4:7168055-7168074 MsG0480018596.01.T01:CDS 40.0%
TAGAAACATTGCGATGTGCA+GGG - Chr4:7166459-7166478 None:intergenic 40.0%
TAGGCAATTGAGAACAGGTT+GGG + Chr4:7166778-7166797 MsG0480018596.01.T01:CDS 40.0%
TATTATCATGTTGGCAGGCA+TGG + Chr4:7166752-7166771 MsG0480018596.01.T01:intron 40.0%
TCCTTTCAACAGGATCAACA+AGG - Chr4:7168900-7168919 None:intergenic 40.0%
TGTTCCTCTTTGACCAGTAA+TGG - Chr4:7166870-7166889 None:intergenic 40.0%
TTAATATTGAGTGCAGGTGG+TGG + Chr4:7165730-7165749 MsG0480018596.01.T01:intron 40.0%
TTAGGCAATTGAGAACAGGT+TGG + Chr4:7166777-7166796 MsG0480018596.01.T01:CDS 40.0%
TTCACCATTACTGGTCAAAG+AGG + Chr4:7166863-7166882 MsG0480018596.01.T01:CDS 40.0%
! ACCAATTCATCATCTGGCTT+TGG - Chr4:7166983-7167002 None:intergenic 40.0%
! AGTTGCAGCTTCACCTTTTA+TGG + Chr4:7168273-7168292 MsG0480018596.01.T01:CDS 40.0%
! GGAGGTGTAGTTAGAAATGT+TGG - Chr4:7168373-7168392 None:intergenic 40.0%
!! CAGCTTGTTATGCAAGATAC+TGG + Chr4:7168766-7168785 MsG0480018596.01.T01:CDS 40.0%
!! CCAATTCATCATCTGGCTTT+GGG - Chr4:7166982-7167001 None:intergenic 40.0%
!! CCACGTCGTTTTACTTTGTT+AGG - Chr4:7164868-7164887 None:intergenic 40.0%
!! GCCAGATGATGAATTGGTTT+TGG + Chr4:7166985-7167004 MsG0480018596.01.T01:CDS 40.0%
!!! TGTGTAGCATTTTTAGGTGG+AGG - Chr4:7168391-7168410 None:intergenic 40.0%
AACACTATTGGTGTACCAGC+TGG + Chr4:7168919-7168938 MsG0480018596.01.T01:CDS 45.0%
ACACAATGCCCAATTCAACC+AGG + Chr4:7166821-7166840 MsG0480018596.01.T01:CDS 45.0%
AGAAACATTGCGATGTGCAG+GGG - Chr4:7166458-7166477 None:intergenic 45.0%
ATGTTGGCAGGCATGGTATT+AGG + Chr4:7166759-7166778 MsG0480018596.01.T01:intron 45.0%
CATCAATGCTGCACTCAATG+AGG + Chr4:7168099-7168118 MsG0480018596.01.T01:CDS 45.0%
CCCAAAGCCAGATGATGAAT+TGG + Chr4:7166979-7166998 MsG0480018596.01.T01:CDS 45.0%
CTTTGGTCGAGTGCAAAGTT+AGG + Chr4:7165067-7165086 MsG0480018596.01.T01:intron 45.0%
GAGCAAGCAATCACACAACA+AGG - Chr4:7164771-7164790 None:intergenic 45.0%
GCAGCTTTACATGAAGGACA+AGG - Chr4:7168529-7168548 None:intergenic 45.0%
GCATGTGTGGTTGGAAGAAA+AGG - Chr4:7165663-7165682 None:intergenic 45.0%
GCTTGAGCTTCAAGCTTCAA+TGG + Chr4:7164502-7164521 MsG0480018596.01.T01:CDS 45.0%
GGATAGGGAACACCTTTCTT+TGG - Chr4:7166956-7166975 None:intergenic 45.0%
GTAGAAACATTGCGATGTGC+AGG - Chr4:7166460-7166479 None:intergenic 45.0%
GTGGCCAATTGTTCTACACA+AGG + Chr4:7167382-7167401 MsG0480018596.01.T01:CDS 45.0%
TATCACTGTATCATCCTCCC+TGG - Chr4:7165834-7165853 None:intergenic 45.0%
TATTTGGCGGAAATCAAGGC+AGG + Chr4:7165273-7165292 MsG0480018596.01.T01:intron 45.0%
TCAGAATGTGCATGTGTGGT+TGG - Chr4:7165672-7165691 None:intergenic 45.0%
TGAGCTTCAAGCTTCAATGG+CGG + Chr4:7164505-7164524 MsG0480018596.01.T01:CDS 45.0%
TGGCTAAGATCAACTGTCCA+TGG + Chr4:7166914-7166933 MsG0480018596.01.T01:CDS 45.0%
TGTCCCAGGAAGACCATTTA+TGG - Chr4:7167362-7167381 None:intergenic 45.0%
! CAAGCTTCAATGGCGGAAAA+CGG + Chr4:7164512-7164531 MsG0480018596.01.T01:CDS 45.0%
! GGGCATTGTGTGATATATGC+AGG - Chr4:7166812-7166831 None:intergenic 45.0%
! TAGGTTTTGCCACTATCCAC+AGG - Chr4:7168067-7168086 None:intergenic 45.0%
!! ATCTGGCTTTGGGAAAGGAT+AGG - Chr4:7166972-7166991 None:intergenic 45.0%
!! TCATCATCTGGCTTTGGGAA+AGG - Chr4:7166977-7166996 None:intergenic 45.0%
!! TCTGGCTTTGGGAAAGGATA+GGG - Chr4:7166971-7166990 None:intergenic 45.0%
!! ACATAAAATAAAATAAATTT+AGG - Chr4:7166358-7166377 None:intergenic 5.0%
!! ATTAAAATTTAAATTTGTAT+AGG + Chr4:7167661-7167680 MsG0480018596.01.T01:intron 5.0%
!! CATAAAATAAAATAAATTTA+GGG - Chr4:7166357-7166376 None:intergenic 5.0%
!!! AAATTTATTTTATTTTATGT+TGG + Chr4:7166358-7166377 MsG0480018596.01.T01:intron 5.0%
AAATGGTCTTCCTGGGACAG+TGG + Chr4:7167363-7167382 MsG0480018596.01.T01:CDS 50.0%
ACAGTTAATGGGGAGTTCCC+GGG + Chr4:7165794-7165813 MsG0480018596.01.T01:CDS 50.0%
ACTATTGGTGTACCAGCTGG+TGG + Chr4:7168922-7168941 MsG0480018596.01.T01:CDS 50.0%
ACTTTGCACTCGACCAAAGC+TGG - Chr4:7165066-7165085 None:intergenic 50.0%
ATCCTCCCTGGCATAAAGAG+TGG - Chr4:7165822-7165841 None:intergenic 50.0%
CACAGTTAATGGGGAGTTCC+CGG + Chr4:7165793-7165812 MsG0480018596.01.T01:CDS 50.0%
GCGACAGGTGCATCCATAAA+AGG - Chr4:7168289-7168308 None:intergenic 50.0%
TCCTCCCTGGCATAAAGAGT+GGG - Chr4:7165821-7165840 None:intergenic 50.0%
TGGCGGAAAACGGTTAGATC+TGG + Chr4:7164522-7164541 MsG0480018596.01.T01:intron 50.0%
! TTGAGAACAGGTTGGGCTGA+TGG + Chr4:7166785-7166804 MsG0480018596.01.T01:CDS 50.0%
!! AGTGTGGGTTGGACAGTCAT+TGG + Chr4:7164915-7164934 MsG0480018596.01.T01:intron 50.0%
ACCCACTCTTTATGCCAGGG+AGG + Chr4:7165817-7165836 MsG0480018596.01.T01:CDS 55.0%
ATTGCAACCCATCCACCAGC+TGG - Chr4:7168937-7168956 None:intergenic 55.0%
CTGGCATAAAGAGTGGGTCC+CGG - Chr4:7165815-7165834 None:intergenic 55.0%
GAACAATTGGCCACTGTCCC+AGG - Chr4:7167376-7167395 None:intergenic 55.0%
GGGACCCACTCTTTATGCCA+GGG + Chr4:7165814-7165833 MsG0480018596.01.T01:CDS 55.0%
TGGCATAAAGAGTGGGTCCC+GGG - Chr4:7165814-7165833 None:intergenic 55.0%
TTGGTGTACCAGCTGGTGGA+TGG + Chr4:7168926-7168945 MsG0480018596.01.T01:CDS 55.0%
! TGGTGTACCAGCTGGTGGAT+GGG + Chr4:7168927-7168946 MsG0480018596.01.T01:CDS 55.0%
CGGGACCCACTCTTTATGCC+AGG + Chr4:7165813-7165832 MsG0480018596.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 7164497 7169020 7164497 ID=MsG0480018596.01;Name=MsG0480018596.01
Chr4 mRNA 7164497 7169020 7164497 ID=MsG0480018596.01.T01;Parent=MsG0480018596.01;Name=MsG0480018596.01.T01;_AED=0.40;_eAED=0.41;_QI=0|0.75|0.4|0.8|1|1|5|0|512
Chr4 exon 7164497 7164533 7164497 ID=MsG0480018596.01.T01:exon:1763;Parent=MsG0480018596.01.T01
Chr4 exon 7165741 7165897 7165741 ID=MsG0480018596.01.T01:exon:1764;Parent=MsG0480018596.01.T01
Chr4 exon 7166769 7167013 7166769 ID=MsG0480018596.01.T01:exon:1765;Parent=MsG0480018596.01.T01
Chr4 exon 7167275 7167403 7167275 ID=MsG0480018596.01.T01:exon:1766;Parent=MsG0480018596.01.T01
Chr4 exon 7168050 7169020 7168050 ID=MsG0480018596.01.T01:exon:1767;Parent=MsG0480018596.01.T01
Chr4 CDS 7164497 7164533 7164497 ID=MsG0480018596.01.T01:cds;Parent=MsG0480018596.01.T01
Chr4 CDS 7165741 7165897 7165741 ID=MsG0480018596.01.T01:cds;Parent=MsG0480018596.01.T01
Chr4 CDS 7166769 7167013 7166769 ID=MsG0480018596.01.T01:cds;Parent=MsG0480018596.01.T01
Chr4 CDS 7167275 7167403 7167275 ID=MsG0480018596.01.T01:cds;Parent=MsG0480018596.01.T01
Chr4 CDS 7168050 7169020 7168050 ID=MsG0480018596.01.T01:cds;Parent=MsG0480018596.01.T01
Gene Sequence

>MsG0480018596.01.T01

ATGAAGCTTGAGCTTCAAGCTTCAATGGCGGAAAACGTGCAGGTGGTGGCCAAAAATACAACTAGATTATGTTCAAGTAAAGCAATTGTCACAGTTAATGGGGAGTTCCCGGGACCCACTCTTTATGCCAGGGAGGATGATACAGTGATAGTCAAAGTTCGAAATCAAGTCAACCACAATATTACCATCCATTGGCATGGTATTAGGCAATTGAGAACAGGTTGGGCTGATGGACCTGCATATATCACACAATGCCCAATTCAACCAGGACATAGTTATACATACAATTTCACCATTACTGGTCAAAGAGGAACACTTCTTTGGCATGCACATGTTAATTGGCTAAGATCAACTGTCCATGGTGCCATAGTTATTTTACCAAAGAAAGGTGTTCCCTATCCTTTCCCAAAGCCAGATGATGAATTGGTTTTGGTATTAGGAGAGTGGTGGAAATCTGATACTGAAGCTGTTATCAATGAAGCTCTAAAATCAGGATTGGCACCAAATGTTTCAGATGCTCATACCATAAATGGTCTTCCTGGGACAGTGGCCAATTGTTCTACACAAGATGTTTACAAACTACCTGTGGATAGTGGCAAAACCTACTTGCTAAGAATCATCAATGCTGCACTCAATGAGGAACTTTTCTTCAAAATAGCTGGCCACAAACTCACAGTAGTAGAAGTTGATGCAACATACACAAAACCATTCCAAATTGAAACAATTGTGATAGCACCTGGTCAAACAACAAATGTACTATTAAAAGCAAACCAAAAATCTGGAAAATATTTAGTTGCAGCTTCACCTTTTATGGATGCACCTGTCGCTGTAGACAATTTAACAGCCACTGCTACATTACATTATTCAGGAACTACTCTTACAAACACCCCAACATTTCTAACTACACCTCCACCTAAAAATGCTACACAAATTGCTAATAATTTTTTAAACTCACTTAAAGGACTTAATTCCAAGAAATACCCAGTTAATGTTCCTTTAAAAATTGATCATTCACTTTTTTTTACTGTTGGATTAGGGGTTAATCCTTGTCCTTCATGTAAAGCTGCAAATGGTAGTAGAGTTGTAGCTGCTATTAATAATGTTACATTTATTATGCCAACTACAGCTTTACTACAAGCACATTATTTCAACATTAAAAATGTTTTTACTACAGATTTTCCACCAAATCCACCTCATATTTATAATTTCACTGGTGCTGGACCTAAAAACTTGAACACTACAAGTGGTACAAAGGTATATAAGTTATCATTTAATGATACTGTTCAGCTTGTTATGCAAGATACTGGAATCATTGCACCTGAGAATCATCCTGTTCATCTTCATGGTTTCAATTTCTTTGTTGTTGGTAAAGGAGTTGGAAATTATGATAGTAAAAATGATCCAAAGAAGTTTAACCTTGTTGATCCTGTTGAAAGGAACACTATTGGTGTACCAGCTGGTGGATGGGTTGCAATTAGATTCAGAGCTGATAATCCAGGTAAAAATACTTATTTTCTTCGATATAAAGCAATGTTTTAA
Protein sequence

>MsG0480018596.01.T01

MKLELQASMAENVQVVAKNTTRLCSSKAIVTVNGEFPGPTLYAREDDTVIVKVRNQVNHNITIHWHGIRQLRTGWADGPAYITQCPIQPGHSYTYNFTITGQRGTLLWHAHVNWLRSTVHGAIVILPKKGVPYPFPKPDDELVLVLGEWWKSDTEAVINEALKSGLAPNVSDAHTINGLPGTVANCSTQDVYKLPVDSGKTYLLRIINAALNEELFFKIAGHKLTVVEVDATYTKPFQIETIVIAPGQTTNVLLKANQKSGKYLVAASPFMDAPVAVDNLTATATLHYSGTTLTNTPTFLTTPPPKNATQIANNFLNSLKGLNSKKYPVNVPLKIDHSLFFTVGLGVNPCPSCKAANGSRVVAAINNVTFIMPTTALLQAHYFNIKNVFTTDFPPNPPHIYNFTGAGPKNLNTTSGTKVYKLSFNDTVQLVMQDTGIIAPENHPVHLHGFNFFVVGKGVGNYDSKNDPKKFNLVDPVERNTIGVPAGGWVAIRFRADNPGKNTYFLRYKAMF*