AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018611.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018611.01.T01 MTR_4g015410 65.147 373 87 5 107 436 1 373 2.32e-167 475
MsG0480018611.01.T01 MTR_1g040690 55.365 466 131 9 42 432 8 471 6.74e-164 470
MsG0480018611.01.T01 MTR_4g015450 70.251 279 57 1 183 435 195 473 1.45e-138 405
MsG0480018611.01.T01 MTR_1g038270 37.972 503 176 14 46 424 7 497 1.66e-88 278
MsG0480018611.01.T01 MTR_4g015290 62.069 232 49 3 42 253 9 221 1.23e-86 264
MsG0480018611.01.T01 MTR_0067s0010 28.866 485 234 21 33 432 15 473 7.54e-36 138
MsG0480018611.01.T01 MTR_7g067750 25.981 535 237 15 34 435 36 544 9.22e-34 133
MsG0480018611.01.T01 MTR_3g466740 26.556 482 247 17 37 432 6 466 5.13e-33 130
MsG0480018611.01.T01 MTR_7g067300 27.054 499 208 21 52 432 11 471 2.47e-30 122
MsG0480018611.01.T01 MTR_7g067660 28.571 413 223 18 46 423 1 376 6.22e-28 114
MsG0480018611.01.T01 MTR_6g010890 25.450 444 249 13 46 434 10 426 9.17e-25 106
MsG0480018611.01.T01 MTR_6g010920 24.444 450 239 14 41 434 5 409 4.79e-24 103
MsG0480018611.01.T01 MTR_3g079390 25.216 464 248 17 34 429 13 445 7.15e-23 100
MsG0480018611.01.T01 MTR_7g068160 29.210 291 132 10 33 257 8 290 1.67e-21 97.4
MsG0480018611.01.T01 MTR_7g068160 34.694 196 80 7 262 432 357 529 2.68e-19 90.5
MsG0480018611.01.T01 MTR_6g009590 24.706 425 237 15 43 419 7 396 2.61e-20 92.8
MsG0480018611.01.T01 MTR_5g086340 25.688 436 226 16 62 434 33 433 3.24e-20 92.8
MsG0480018611.01.T01 MTR_7g067970 34.409 186 86 5 262 432 366 530 3.84e-20 93.2
MsG0480018611.01.T01 MTR_7g067940 31.769 277 128 9 42 257 10 286 6.01e-20 92.8
MsG0480018611.01.T01 MTR_7g067940 38.318 107 42 2 264 346 357 463 7.21e-15 77.0
MsG0480018611.01.T01 MTR_7g068070 33.862 189 85 5 260 427 367 536 2.45e-19 90.9
MsG0480018611.01.T01 MTR_7g068070 29.630 189 84 4 42 191 10 188 2.97e-17 84.3
MsG0480018611.01.T01 MTR_7g068150 30.597 268 136 11 42 277 6 255 6.41e-19 89.4
MsG0480018611.01.T01 MTR_7g011980 25.258 388 232 10 46 432 10 340 7.55e-19 87.8
MsG0480018611.01.T01 MTR_7g067600 32.778 180 93 4 262 432 356 516 1.42e-18 88.2
MsG0480018611.01.T01 MTR_7g067880 32.967 182 82 7 262 420 345 509 2.36e-18 87.8
MsG0480018611.01.T01 MTR_6g011050 25.952 420 231 15 61 434 24 409 9.54e-18 85.1
MsG0480018611.01.T01 MTR_3g107590 26.558 369 211 10 46 359 11 374 8.44e-17 82.4
MsG0480018611.01.T01 MTR_7g067990 30.319 188 93 5 262 432 423 589 6.69e-15 77.4
MsG0480018611.01.T01 MTR_6g010850 25.000 296 155 10 165 428 83 343 7.92e-13 70.1
MsG0480018611.01.T01 MTR_7g068040 34.211 152 79 4 56 194 12 155 1.87e-12 65.5
MsG0480018611.01.T01 MTR_5g016570 23.691 401 211 15 33 344 69 463 2.51e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018611.01.T01 AT3G50150 23.702 443 231 12 63 432 92 500 7.02e-23 101
MsG0480018611.01.T01 AT3G50160 26.478 423 222 15 63 432 106 492 5.59e-22 98.6
MsG0480018611.01.T01 AT4G31980 25.000 444 242 15 37 429 270 673 9.04e-22 98.6
MsG0480018611.01.T01 AT5G11290 25.476 420 225 14 61 429 33 415 1.15e-21 97.1
MsG0480018611.01.T01 AT3G47200 25.843 445 219 18 59 429 44 451 2.31e-19 90.5
MsG0480018611.01.T01 AT3G47200 25.843 445 219 18 59 429 44 451 2.31e-19 90.5
MsG0480018611.01.T01 AT2G44930 24.270 445 230 15 61 432 84 494 1.22e-16 82.4
MsG0480018611.01.T01 AT2G28580 23.583 441 237 15 59 432 39 446 4.88e-16 80.5
MsG0480018611.01.T01 AT3G50180 24.186 430 238 15 63 433 180 580 5.24e-16 80.9
MsG0480018611.01.T01 AT3G47250 24.176 455 226 16 60 435 60 474 7.22e-16 80.1
MsG0480018611.01.T01 AT3G47250 24.176 455 226 16 60 435 60 474 7.22e-16 80.1
MsG0480018611.01.T01 AT3G47250 24.176 455 226 16 60 435 60 474 7.22e-16 80.1
MsG0480018611.01.T01 AT2G28580 23.583 441 237 15 59 432 107 514 9.18e-16 79.7
MsG0480018611.01.T01 AT2G28580 23.888 427 232 15 61 432 109 497 1.20e-15 79.3
MsG0480018611.01.T01 AT2G28580 23.583 441 237 15 59 432 121 528 1.20e-15 79.3
MsG0480018611.01.T01 AT2G28580 23.888 427 232 15 61 432 123 511 1.52e-15 79.3
MsG0480018611.01.T01 AT2G36430 21.779 326 199 8 60 331 44 367 1.89e-15 78.6

Find 88 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTATAAGTTTAATGATTT+TGG 0.096338 4:+7384043 MsG0480018611.01.T01:intron
CTTGGGAGCAAAGCAAATTT+TGG 0.175037 4:+7384131 MsG0480018611.01.T01:CDS
TATCCTATGTTGAATATTTC+CGG 0.216251 4:+7383834 MsG0480018611.01.T01:CDS
ATTGAATTACTTCGAGAAAA+AGG 0.245578 4:+7384217 MsG0480018611.01.T01:CDS
TTTGATAGTTGTGTTTACTA+TGG 0.262263 4:+7384439 MsG0480018611.01.T01:CDS
CACCAGACACCTTCAATTAA+TGG 0.267345 4:+7383354 MsG0480018611.01.T01:CDS
GCTACCAGGCTTCGAGCTTC+TGG 0.290969 4:+7383951 MsG0480018611.01.T01:CDS
TTCCATTAATTGAAGGTGTC+TGG 0.346178 4:-7383356 None:intergenic
AATGGAGAAATTTAATTGCT+TGG 0.347108 4:+7384113 MsG0480018611.01.T01:CDS
GTAGCACAGTAAAATAATTC+TGG 0.349906 4:-7383933 None:intergenic
ATGGGCATTGGTGTGTTAAA+TGG 0.354589 4:+7380837 MsG0480018611.01.T01:CDS
TCGCGCATGTAATGCCATTT+CGG 0.360495 4:-7383382 None:intergenic
TATTCCACCGTTACATGTTA+AGG 0.363754 4:+7384075 MsG0480018611.01.T01:CDS
TTTGCTTCTTGAAGTTCATC+TGG 0.364041 4:-7383277 None:intergenic
ATGGAGAAATTTAATTGCTT+GGG 0.367587 4:+7384114 MsG0480018611.01.T01:CDS
TCTGGTGGTTCCTCTATGTA+AGG 0.367932 4:-7383338 None:intergenic
GTTCCCATTGAAGTGATGTT+AGG 0.376179 4:+7383208 MsG0480018611.01.T01:CDS
GTGTTTACTATGGGCGAAAC+TGG 0.381776 4:+7384449 MsG0480018611.01.T01:CDS
TGCTATATGATGTTGTAGTT+TGG 0.384446 4:-7383635 None:intergenic
ATTTCCAAACCGTAGGTATA+TGG 0.397051 4:-7384492 None:intergenic
AATATTGTCCGTAACACCTT+TGG 0.409178 4:+7383810 MsG0480018611.01.T01:CDS
GTTGAATGTGTATGACTTCA+AGG 0.410089 4:+7384351 MsG0480018611.01.T01:CDS
TCCTCTATGTAAGGGTCCTA+TGG 0.417837 4:-7383329 None:intergenic
AGGAAACAACAGAAGTGAAA+TGG 0.436343 4:+7384095 MsG0480018611.01.T01:CDS
ATCCATGTGCTCGACTCCTT+TGG 0.436878 4:-7384302 None:intergenic
TAACTTCTTTAGAACAATGA+AGG 0.436914 4:-7383733 None:intergenic
AGAACCTAACATCACTTCAA+TGG 0.437740 4:-7383212 None:intergenic
TTGAAGTTCATCTGGAACGT+TGG 0.442559 4:-7383269 None:intergenic
TTGATAGTTGTGTTTACTAT+GGG 0.444058 4:+7384440 MsG0480018611.01.T01:CDS
TTAGAACAATGAAGGGAACT+TGG 0.448136 4:-7383725 None:intergenic
TCTTTGATTTCACTATCATC+AGG 0.448626 4:-7383771 None:intergenic
AATCCTTCAAACGGAGGAAA+AGG 0.460751 4:+7383665 MsG0480018611.01.T01:CDS
GAACCTAACATCACTTCAAT+GGG 0.470488 4:-7383211 None:intergenic
AATTAATGGAAGAACCGAAA+TGG 0.472785 4:+7383368 MsG0480018611.01.T01:CDS
GTGACCATATACCTACGGTT+TGG 0.473148 4:+7384488 MsG0480018611.01.T01:CDS
GTTCAGGTATAGTTCCTTGT+CGG 0.475299 4:-7383414 None:intergenic
AATATGTTTGCATGATAGTA+AGG 0.475669 4:-7384549 None:intergenic
TCGGTTCTTCCATTAATTGA+AGG 0.476161 4:-7383363 None:intergenic
AAAATAGAACATCAGCGATA+AGG 0.479894 4:+7383437 MsG0480018611.01.T01:CDS
CATCAGGCTTGGCGACTACA+TGG 0.479923 4:+7383608 MsG0480018611.01.T01:intron
CATTGATGCCAAGAGCATAT+AGG 0.484059 4:-7384406 None:intergenic
AATGTGGCGATGACATTCTC+AGG 0.487747 4:+7383467 MsG0480018611.01.T01:CDS
TAGGATAACCAAAGGTGTTA+CGG 0.491121 4:-7383818 None:intergenic
GTTGTTTCCTTAACATGTAA+CGG 0.494247 4:-7384082 None:intergenic
AGAAAATAAACTAGCCACTA+CGG 0.496543 4:-7384579 None:intergenic
ATGAAGTATATGAGCACCTC+CGG 0.499623 4:-7383853 None:intergenic
ATAGTGGCTCCACAATATAA+TGG 0.506954 4:-7380861 None:intergenic
CATGAAAAGTCAACGAGTGA+TGG 0.510005 4:+7380818 None:intergenic
CATGAAAAGTCAACGAGTGA+TGG 0.510005 4:+7380912 MsG0480018611.01.T01:CDS
GTTTGTATGCATTAATATTG+TGG 0.520059 4:+7380884 MsG0480018611.01.T01:CDS
GAAAATAAACTAGCCACTAC+GGG 0.521294 4:-7384578 None:intergenic
TACTCCAGAAGCTCGAAGCC+TGG 0.522070 4:-7383955 None:intergenic
GAAAATGGCCTATATGCTCT+TGG 0.522935 4:+7384398 MsG0480018611.01.T01:CDS
TATGCTCTTGGCATCAATGT+AGG 0.528381 4:+7384410 MsG0480018611.01.T01:CDS
ATGAAAAGTCAACGAGTGAT+GGG 0.543376 4:+7380819 MsG0480018611.01.T01:CDS
ATGAAAAGTCAACGAGTGAT+GGG 0.543376 4:+7380913 MsG0480018611.01.T01:CDS
CAATGACTCAATCCTTCAAA+CGG 0.549110 4:+7383656 MsG0480018611.01.T01:CDS
CTGGTGGTTCCTCTATGTAA+GGG 0.552052 4:-7383337 None:intergenic
ATGTTAGGTTCTCTCAATCA+TGG 0.555526 4:+7383223 MsG0480018611.01.T01:CDS
GATACGTGACCATATACCTA+CGG 0.556626 4:+7384483 MsG0480018611.01.T01:CDS
AGTCAACGAGTGATGGGCAT+TGG 0.558104 4:+7380825 MsG0480018611.01.T01:CDS
AGTCAACGAGTGATGGGCAT+TGG 0.558104 4:+7380919 MsG0480018611.01.T01:CDS
TTGAATGTGTATGACTTCAA+GGG 0.560098 4:+7384352 MsG0480018611.01.T01:CDS
ATTAATGCATACAAACATAG+TGG 0.560462 4:-7380877 None:intergenic
TCTAAAGAAGTTATATCGAA+AGG 0.563417 4:+7383743 MsG0480018611.01.T01:CDS
CATTAATTGAAGGTGTCTGG+TGG 0.564355 4:-7383353 None:intergenic
CGCGAATTTCTTGACCGACA+AGG 0.579533 4:+7383400 MsG0480018611.01.T01:CDS
TGCCAAAGGAGTCGAGCACA+TGG 0.579732 4:+7384300 MsG0480018611.01.T01:CDS
TCCATAGGACCCTTACATAG+AGG 0.587548 4:+7383328 MsG0480018611.01.T01:CDS
TTATTTCGAACGATTGCCAA+AGG 0.591767 4:+7384286 MsG0480018611.01.T01:CDS
AACTTCTTTAGAACAATGAA+GGG 0.592530 4:-7383732 None:intergenic
CCTCCGGAAATATTCAACAT+AGG 0.596340 4:-7383837 None:intergenic
CCTACGGTTTGGAAATTCGT+AGG 0.604657 4:+7384499 MsG0480018611.01.T01:CDS
ACCATTAAAGAAAAGTGCAT+AGG 0.609977 4:-7384173 None:intergenic
AGCAAAACCAACAACATGAA+AGG 0.612726 4:+7383898 MsG0480018611.01.T01:CDS
ACATATTACTCGTCCCGTAG+TGG 0.619693 4:+7384565 MsG0480018611.01.T01:CDS
GCGATAAGGTTAAGAGAATG+TGG 0.624078 4:+7383451 MsG0480018611.01.T01:CDS
TTAAATGGACCATTATATTG+TGG 0.634327 4:+7380852 MsG0480018611.01.T01:CDS
TGAATGTGTATGACTTCAAG+GGG 0.636220 4:+7384353 MsG0480018611.01.T01:CDS
ATTCAACATAGGATAACCAA+AGG 0.645116 4:-7383826 None:intergenic
TTTGCATGATAGTAAGGACG+AGG 0.654973 4:-7384543 None:intergenic
CCTATGTTGAATATTTCCGG+AGG 0.666197 4:+7383837 MsG0480018611.01.T01:CDS
GTTATAGCGAGATTTGTGCA+AGG 0.667399 4:+7384329 MsG0480018611.01.T01:CDS
TTTGATGCACTTGTCCACAG+TGG 0.674102 4:+7383875 MsG0480018611.01.T01:CDS
TGACTCAATCCTTCAAACGG+AGG 0.680523 4:+7383659 MsG0480018611.01.T01:CDS
CCTACGAATTTCCAAACCGT+AGG 0.696387 4:-7384499 None:intergenic
GTTTCCTTAACATGTAACGG+TGG 0.708978 4:-7384079 None:intergenic
TACGGACAATATTAGCAACA+CGG 0.718195 4:-7383800 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTCATTTATAAAAATAAA+TGG + Chr4:7382250-7382269 MsG0480018611.01.T01:intron 10.0%
!!! AAATCTATTATTTTTTTTGA+GGG + Chr4:7382625-7382644 MsG0480018611.01.T01:intron 10.0%
!!! TAAATCTATTATTTTTTTTG+AGG + Chr4:7382624-7382643 MsG0480018611.01.T01:intron 10.0%
!! CAGTTATAATTATAAATGTA+TGG + Chr4:7382110-7382129 MsG0480018611.01.T01:intron 15.0%
!! TAAGATTAACAAATAACTAA+TGG - Chr4:7381825-7381844 None:intergenic 15.0%
!! TTATAAATAAATTGCTAGAT+CGG - Chr4:7382756-7382775 None:intergenic 15.0%
!! TTTAACACAACTTAAAAAAA+TGG - Chr4:7381935-7381954 None:intergenic 15.0%
!!! GAATCTTTATTTTTTTAAAG+TGG - Chr4:7382230-7382249 None:intergenic 15.0%
!!! TTTAAACCAATAATTGATTT+TGG - Chr4:7382715-7382734 None:intergenic 15.0%
!!! TTTTTACCAAAATCAATTAT+TGG + Chr4:7382706-7382725 MsG0480018611.01.T01:intron 15.0%
!! AAAAAAAAGTTGTTGTAATG+TGG + Chr4:7382840-7382859 MsG0480018611.01.T01:intron 20.0%
!! AAACCAAAAAATATATCCAT+AGG + Chr4:7383313-7383332 MsG0480018611.01.T01:CDS 20.0%
!! AGAAAGAAAAAAATTGCAAA+TGG + Chr4:7380973-7380992 MsG0480018611.01.T01:intron 20.0%
!! AGGTTTAATCAATCAATTAT+TGG + Chr4:7382677-7382696 MsG0480018611.01.T01:intron 20.0%
!! GCTAAAATAATGATAATAGA+TGG + Chr4:7383564-7383583 MsG0480018611.01.T01:intron 20.0%
!! TTTCTTCTATTAAGAATACA+TGG - Chr4:7381982-7382001 None:intergenic 20.0%
!! TTTGAACTAAACTATATTGA+TGG + Chr4:7382189-7382208 MsG0480018611.01.T01:intron 20.0%
!!! AAACACAAACTTTAAAGAAA+TGG - Chr4:7381637-7381656 None:intergenic 20.0%
!!! ATAGAATTAGATGACATTTT+GGG - Chr4:7381268-7381287 None:intergenic 20.0%
!!! GGTATAAGTTTAATGATTTT+GGG + Chr4:7384044-7384063 MsG0480018611.01.T01:intron 20.0%
!!! GTATAAGTTTAATGATTTTG+GGG + Chr4:7384045-7384064 MsG0480018611.01.T01:intron 20.0%
!!! TGAGATAATACCATTTTTTA+TGG + Chr4:7382473-7382492 MsG0480018611.01.T01:intron 20.0%
!!! TGGTATAAGTTTAATGATTT+TGG + Chr4:7384043-7384062 MsG0480018611.01.T01:intron 20.0%
!!! TTTAGTTCAAAATCTGAATT+GGG - Chr4:7382180-7382199 None:intergenic 20.0%
! AAAATCATTCACTAGTAGTA+TGG - Chr4:7381872-7381891 None:intergenic 25.0%
! AAAATTTGGTTAGAGAAATG+TGG - Chr4:7383137-7383156 None:intergenic 25.0%
! AAATCATTCACTAGTAGTAT+GGG - Chr4:7381871-7381890 None:intergenic 25.0%
! AAGAACAACGACAAAAAATT+TGG - Chr4:7383151-7383170 None:intergenic 25.0%
! AATATGTTTGCATGATAGTA+AGG - Chr4:7384552-7384571 None:intergenic 25.0%
! AATGGAGAAATTTAATTGCT+TGG + Chr4:7384113-7384132 MsG0480018611.01.T01:CDS 25.0%
! ACTAAAGTGAAAGTAGAAAA+TGG + Chr4:7381176-7381195 MsG0480018611.01.T01:intron 25.0%
! ATGGAGAAATTTAATTGCTT+GGG + Chr4:7384114-7384133 MsG0480018611.01.T01:CDS 25.0%
! ATTAATGCATACAAACATAG+TGG - Chr4:7380880-7380899 None:intergenic 25.0%
! ATTGAATTACTTCGAGAAAA+AGG + Chr4:7384217-7384236 MsG0480018611.01.T01:CDS 25.0%
! GATAAAGATGAAAAAGTTCA+AGG - Chr4:7381511-7381530 None:intergenic 25.0%
! GATAGATACTAAAGTGATAA+CGG - Chr4:7381085-7381104 None:intergenic 25.0%
! GATCTTAACTCAAAAAGATT+TGG + Chr4:7382356-7382375 MsG0480018611.01.T01:intron 25.0%
! GTTTGTATGCATTAATATTG+TGG + Chr4:7380884-7380903 MsG0480018611.01.T01:CDS 25.0%
! TATCCTATGTTGAATATTTC+CGG + Chr4:7383834-7383853 MsG0480018611.01.T01:CDS 25.0%
! TATTTACTTCCTCATAAACA+TGG + Chr4:7382951-7382970 MsG0480018611.01.T01:intron 25.0%
! TCTAAAGAAGTTATATCGAA+AGG + Chr4:7383743-7383762 MsG0480018611.01.T01:CDS 25.0%
! TTAAATGGACCATTATATTG+TGG + Chr4:7380852-7380871 MsG0480018611.01.T01:CDS 25.0%
!! AGGAATTTGAGATTCAATTT+GGG - Chr4:7381234-7381253 None:intergenic 25.0%
!! ATACTACTAGTGAATGATTT+TGG + Chr4:7381871-7381890 MsG0480018611.01.T01:intron 25.0%
!! CTTGTTGATATGTTCAATTT+TGG + Chr4:7384023-7384042 MsG0480018611.01.T01:intron 25.0%
!! GATAGAATTAGATGACATTT+TGG - Chr4:7381269-7381288 None:intergenic 25.0%
!! GTTTAGTTCAAAATCTGAAT+TGG - Chr4:7382181-7382200 None:intergenic 25.0%
!! TAGGAATTTGAGATTCAATT+TGG - Chr4:7381235-7381254 None:intergenic 25.0%
!! TCTTTGACTTCCATAAAAAA+TGG - Chr4:7382486-7382505 None:intergenic 25.0%
!! TTACCAAAATTTTGCGAAAA+TGG + Chr4:7384383-7384402 MsG0480018611.01.T01:CDS 25.0%
!! TTGATAGTTGTGTTTACTAT+GGG + Chr4:7384440-7384459 MsG0480018611.01.T01:CDS 25.0%
!! TTTGATAGTTGTGTTTACTA+TGG + Chr4:7384439-7384458 MsG0480018611.01.T01:CDS 25.0%
!!! AACTTCTTTAGAACAATGAA+GGG - Chr4:7383735-7383754 None:intergenic 25.0%
!!! AATAGATGGTTGTTTTCTAT+TGG + Chr4:7383578-7383597 MsG0480018611.01.T01:intron 25.0%
!!! AATTTGGGGATATTGATTTT+TGG - Chr4:7381219-7381238 None:intergenic 25.0%
!!! ATTATTTTAGCGATTTCTTC+TGG - Chr4:7383555-7383574 None:intergenic 25.0%
!!! GTTTCTTTTTAATTTCCACT+AGG + Chr4:7382541-7382560 MsG0480018611.01.T01:intron 25.0%
!!! TAACTTCTTTAGAACAATGA+AGG - Chr4:7383736-7383755 None:intergenic 25.0%
AAAAAAATGTATGGCCAAGT+GGG - Chr4:7382419-7382438 None:intergenic 30.0%
AAAATAGAACATCAGCGATA+AGG + Chr4:7383437-7383456 MsG0480018611.01.T01:CDS 30.0%
AAAGTAGAAAATGGTCACTT+TGG + Chr4:7381185-7381204 MsG0480018611.01.T01:intron 30.0%
AAAGTTGTTGTAATGTGGAA+AGG + Chr4:7382845-7382864 MsG0480018611.01.T01:intron 30.0%
AATTAATGGAAGAACCGAAA+TGG + Chr4:7383368-7383387 MsG0480018611.01.T01:CDS 30.0%
ACAACATGAAAGGAAAAAAG+CGG + Chr4:7383908-7383927 MsG0480018611.01.T01:CDS 30.0%
AGTAACTTATATTGAGACAG+CGG + Chr4:7381954-7381973 MsG0480018611.01.T01:intron 30.0%
ATTCAACATAGGATAACCAA+AGG - Chr4:7383829-7383848 None:intergenic 30.0%
GCTAAATGGATCATTAGAAT+TGG + Chr4:7380945-7380964 MsG0480018611.01.T01:intron 30.0%
GTAGCACAGTAAAATAATTC+TGG - Chr4:7383936-7383955 None:intergenic 30.0%
TAAAAAAATGTATGGCCAAG+TGG - Chr4:7382420-7382439 None:intergenic 30.0%
TGCTATATGATGTTGTAGTT+TGG - Chr4:7383638-7383657 None:intergenic 30.0%
TTAAACACCAACTTACTGTT+AGG + Chr4:7381312-7381331 MsG0480018611.01.T01:intron 30.0%
TTGAATGTGTATGACTTCAA+GGG + Chr4:7384352-7384371 MsG0480018611.01.T01:CDS 30.0%
! ACCATTAAAGAAAAGTGCAT+AGG - Chr4:7384176-7384195 None:intergenic 30.0%
! ATGATTCATGTTTGTTGAGA+AGG - Chr4:7381459-7381478 None:intergenic 30.0%
! ATTCAAGTTCATTGTCATCT+TGG + Chr4:7381673-7381692 MsG0480018611.01.T01:intron 30.0%
! GGAATTTGAGATTCAATTTG+GGG - Chr4:7381233-7381252 None:intergenic 30.0%
! GTTGTTTCCTTAACATGTAA+CGG - Chr4:7384085-7384104 None:intergenic 30.0%
! TCCTATGCACTTTTCTTTAA+TGG + Chr4:7384172-7384191 MsG0480018611.01.T01:CDS 30.0%
! TCTTTGATTTCACTATCATC+AGG - Chr4:7383774-7383793 None:intergenic 30.0%
!! AACAGTAAGTTGGTGTTTAA+TGG - Chr4:7381312-7381331 None:intergenic 30.0%
!! AATTATTTTACTGTGCTACC+AGG + Chr4:7383937-7383956 MsG0480018611.01.T01:CDS 30.0%
!! AGATGCAATCTGATTTTAGT+TGG + Chr4:7383182-7383201 MsG0480018611.01.T01:intron 30.0%
!!! CATTTTGGGATTTGAGATTT+AGG - Chr4:7381254-7381273 None:intergenic 30.0%
!!! CTTTTTTCCTTTCATGTTGT+TGG - Chr4:7383908-7383927 None:intergenic 30.0%
!!! GGATATTGATTTTTGGTTCA+AGG - Chr4:7381212-7381231 None:intergenic 30.0%
!!! GGTCCTATGGATATATTTTT+TGG - Chr4:7383319-7383338 None:intergenic 30.0%
AATATTGTCCGTAACACCTT+TGG + Chr4:7383810-7383829 MsG0480018611.01.T01:CDS 35.0%
AGAACCTAACATCACTTCAA+TGG - Chr4:7383215-7383234 None:intergenic 35.0%
AGCAAAACCAACAACATGAA+AGG + Chr4:7383898-7383917 MsG0480018611.01.T01:CDS 35.0%
AGGAAACAACAGAAGTGAAA+TGG + Chr4:7384095-7384114 MsG0480018611.01.T01:CDS 35.0%
ATAGTAAGTATGCACAGTCA+GGG - Chr4:7381339-7381358 None:intergenic 35.0%
ATAGTGGCTCCACAATATAA+TGG - Chr4:7380864-7380883 None:intergenic 35.0%
ATGAAAAGTCAACGAGTGAT+GGG + Chr4:7380819-7380838 MsG0480018611.01.T01:CDS 35.0%
ATGTTAGGTTCTCTCAATCA+TGG + Chr4:7383223-7383242 MsG0480018611.01.T01:CDS 35.0%
ATTTCCAAACCGTAGGTATA+TGG - Chr4:7384495-7384514 None:intergenic 35.0%
CAATGACTCAATCCTTCAAA+CGG + Chr4:7383656-7383675 MsG0480018611.01.T01:CDS 35.0%
GAACCTAACATCACTTCAAT+GGG - Chr4:7383214-7383233 None:intergenic 35.0%
GATGTGAACACGCAATAATA+AGG - Chr4:7382899-7382918 None:intergenic 35.0%
GCTGTTACGGTATTCAATTA+TGG - Chr4:7381435-7381454 None:intergenic 35.0%
GTAAACATGTACTTTCGCTA+AGG + Chr4:7381376-7381395 MsG0480018611.01.T01:intron 35.0%
GTAACAATTATTGTCCCACT+TGG + Chr4:7382402-7382421 MsG0480018611.01.T01:intron 35.0%
GTGCATACTTACTATCAGTT+AGG + Chr4:7381344-7381363 MsG0480018611.01.T01:intron 35.0%
GTTGAATGTGTATGACTTCA+AGG + Chr4:7384351-7384370 MsG0480018611.01.T01:CDS 35.0%
TAATTTCCACTAGGCAAAGT+GGG + Chr4:7382550-7382569 MsG0480018611.01.T01:intron 35.0%
TACGGACAATATTAGCAACA+CGG - Chr4:7383803-7383822 None:intergenic 35.0%
TATTCCACCGTTACATGTTA+AGG + Chr4:7384075-7384094 MsG0480018611.01.T01:CDS 35.0%
TCGGTTCTTCCATTAATTGA+AGG - Chr4:7383366-7383385 None:intergenic 35.0%
TCTTATATTGCTCCAAAGCA+AGG - Chr4:7381487-7381506 None:intergenic 35.0%
TGAATGTGTATGACTTCAAG+GGG + Chr4:7384353-7384372 MsG0480018611.01.T01:CDS 35.0%
TTAATTTCCACTAGGCAAAG+TGG + Chr4:7382549-7382568 MsG0480018611.01.T01:intron 35.0%
TTACGATGACATGACATATG+AGG + Chr4:7381143-7381162 MsG0480018611.01.T01:intron 35.0%
TTAGAACAATGAAGGGAACT+TGG - Chr4:7383728-7383747 None:intergenic 35.0%
TTATTTCGAACGATTGCCAA+AGG + Chr4:7384286-7384305 MsG0480018611.01.T01:CDS 35.0%
TTTGCTTCTTGAAGTTCATC+TGG - Chr4:7383280-7383299 None:intergenic 35.0%
! AAAGATTTGGTTAACAGCGA+TGG + Chr4:7382369-7382388 MsG0480018611.01.T01:intron 35.0%
! AAAGTGATTTGTGCTAGCTA+TGG + Chr4:7383496-7383515 MsG0480018611.01.T01:intron 35.0%
! GCTGATGTTCTATTTTGTTC+AGG - Chr4:7383433-7383452 None:intergenic 35.0%
!! AGGCCATTTTCGCAAAATTT+TGG - Chr4:7384389-7384408 None:intergenic 35.0%
!! CACAGCAATACTCTAAAATG+TGG - Chr4:7381732-7381751 None:intergenic 35.0%
!! TAGGATAACCAAAGGTGTTA+CGG - Chr4:7383821-7383840 None:intergenic 35.0%
!! TTCCATTAATTGAAGGTGTC+TGG - Chr4:7383359-7383378 None:intergenic 35.0%
!!! GCAATCTGATTTTAGTTGGA+TGG + Chr4:7383186-7383205 MsG0480018611.01.T01:intron 35.0%
AATCCTTCAAACGGAGGAAA+AGG + Chr4:7383665-7383684 MsG0480018611.01.T01:CDS 40.0%
ACTGCAAGACCATGTTTATG+AGG - Chr4:7382963-7382982 None:intergenic 40.0%
ATGAAGTATATGAGCACCTC+CGG - Chr4:7383856-7383875 None:intergenic 40.0%
CAAGTTCATTGTCATCTTGG+CGG + Chr4:7381676-7381695 MsG0480018611.01.T01:intron 40.0%
CACCAGACACCTTCAATTAA+TGG + Chr4:7383354-7383373 MsG0480018611.01.T01:CDS 40.0%
CATGAAAAGTCAACGAGTGA+TGG + Chr4:7380912-7380931 MsG0480018611.01.T01:CDS 40.0%
CCTATGTTGAATATTTCCGG+AGG + Chr4:7383837-7383856 MsG0480018611.01.T01:CDS 40.0%
CCTCCGGAAATATTCAACAT+AGG - Chr4:7383840-7383859 None:intergenic 40.0%
CTTCTGCAATACTGTGTTAC+AGG - Chr4:7381539-7381558 None:intergenic 40.0%
GAAAATGGCCTATATGCTCT+TGG + Chr4:7384398-7384417 MsG0480018611.01.T01:CDS 40.0%
GAATCATGAACTCCTTGCTT+TGG + Chr4:7381472-7381491 MsG0480018611.01.T01:intron 40.0%
GATACGTGACCATATACCTA+CGG + Chr4:7384483-7384502 MsG0480018611.01.T01:CDS 40.0%
GATAGTAAGTATGCACAGTC+AGG - Chr4:7381340-7381359 None:intergenic 40.0%
GCGATAAGGTTAAGAGAATG+TGG + Chr4:7383451-7383470 MsG0480018611.01.T01:CDS 40.0%
GTTATAGCGAGATTTGTGCA+AGG + Chr4:7384329-7384348 MsG0480018611.01.T01:CDS 40.0%
GTTCAGGTATAGTTCCTTGT+CGG - Chr4:7383417-7383436 None:intergenic 40.0%
GTTCCCATTGAAGTGATGTT+AGG + Chr4:7383208-7383227 MsG0480018611.01.T01:CDS 40.0%
GTTTCCTTAACATGTAACGG+TGG - Chr4:7384082-7384101 None:intergenic 40.0%
TATGCTCTTGGCATCAATGT+AGG + Chr4:7384410-7384429 MsG0480018611.01.T01:CDS 40.0%
TGTACTTTCGCTAAGGTCTT+TGG + Chr4:7381383-7381402 MsG0480018611.01.T01:intron 40.0%
TTCTATTGGAGCTTCTCATC+AGG + Chr4:7383592-7383611 MsG0480018611.01.T01:intron 40.0%
TTGGCGGAATATGAGTTTCT+TGG + Chr4:7381692-7381711 MsG0480018611.01.T01:intron 40.0%
TTGGTTAGAGAAATGTGGAG+AGG - Chr4:7383132-7383151 None:intergenic 40.0%
TTGTTGAGAAGGAGCTGTTA+CGG - Chr4:7381448-7381467 None:intergenic 40.0%
TTTGCATGATAGTAAGGACG+AGG - Chr4:7384546-7384565 None:intergenic 40.0%
! ATACCTTTTCCTCCGTTTGA+AGG - Chr4:7383671-7383690 None:intergenic 40.0%
! ATGACATATGAGGTGTCACA+GGG + Chr4:7381153-7381172 MsG0480018611.01.T01:intron 40.0%
! CATTGATGCCAAGAGCATAT+AGG - Chr4:7384409-7384428 None:intergenic 40.0%
! CTTGGGAGCAAAGCAAATTT+TGG + Chr4:7384131-7384150 MsG0480018611.01.T01:CDS 40.0%
! GAAATGTGGAGAGGTATAAC+AGG - Chr4:7383123-7383142 None:intergenic 40.0%
! TGATTTGTGCTAGCTATGGT+GGG + Chr4:7383500-7383519 MsG0480018611.01.T01:intron 40.0%
! TTGAAGTTCATCTGGAACGT+TGG - Chr4:7383272-7383291 None:intergenic 40.0%
!! ATGGGCATTGGTGTGTTAAA+TGG + Chr4:7380837-7380856 MsG0480018611.01.T01:CDS 40.0%
!! CATTAATTGAAGGTGTCTGG+TGG - Chr4:7383356-7383375 None:intergenic 40.0%
!!! TCACTCGTTGACTTTTCATG+TGG - Chr4:7380912-7380931 None:intergenic 40.0%
AATGTGGCGATGACATTCTC+AGG + Chr4:7383467-7383486 MsG0480018611.01.T01:CDS 45.0%
ACATATTACTCGTCCCGTAG+TGG + Chr4:7384565-7384584 MsG0480018611.01.T01:CDS 45.0%
CCTACGAATTTCCAAACCGT+AGG - Chr4:7384502-7384521 None:intergenic 45.0%
CTGGTGGTTCCTCTATGTAA+GGG - Chr4:7383340-7383359 None:intergenic 45.0%
GTCACATAGGTTCTTGACTC+AGG + Chr4:7381026-7381045 MsG0480018611.01.T01:intron 45.0%
GTGACCATATACCTACGGTT+TGG + Chr4:7384488-7384507 MsG0480018611.01.T01:CDS 45.0%
GTGTTTACTATGGGCGAAAC+TGG + Chr4:7384449-7384468 MsG0480018611.01.T01:CDS 45.0%
TCAGGGACCTAACAGTAAGT+TGG - Chr4:7381322-7381341 None:intergenic 45.0%
TCCATAGGACCCTTACATAG+AGG + Chr4:7383328-7383347 MsG0480018611.01.T01:CDS 45.0%
TCCTCTATGTAAGGGTCCTA+TGG - Chr4:7383332-7383351 None:intergenic 45.0%
TCTGGTGGTTCCTCTATGTA+AGG - Chr4:7383341-7383360 None:intergenic 45.0%
TGACTCAATCCTTCAAACGG+AGG + Chr4:7383659-7383678 MsG0480018611.01.T01:CDS 45.0%
TTTGATGCACTTGTCCACAG+TGG + Chr4:7383875-7383894 MsG0480018611.01.T01:CDS 45.0%
! CATGACATATGAGGTGTCAC+AGG + Chr4:7381152-7381171 MsG0480018611.01.T01:intron 45.0%
! CCTACGGTTTGGAAATTCGT+AGG + Chr4:7384499-7384518 MsG0480018611.01.T01:CDS 45.0%
! GTGATTTGTGCTAGCTATGG+TGG + Chr4:7383499-7383518 MsG0480018611.01.T01:intron 45.0%
! TCGCGCATGTAATGCCATTT+CGG - Chr4:7383385-7383404 None:intergenic 45.0%
!! ATGGGCATTGGTGTGCTAAA+TGG + Chr4:7380931-7380950 MsG0480018611.01.T01:intron 45.0%
!!! TTGTTGGTTTTGCTCCACTG+TGG - Chr4:7383892-7383911 None:intergenic 45.0%
!! AAATAAAATAAAAAAATGTA+TGG - Chr4:7382428-7382447 None:intergenic 5.0%
!!! TCTATTATTTATTTTTTTAT+AGG + Chr4:7382657-7382676 MsG0480018611.01.T01:intron 5.0%
ATCCATGTGCTCGACTCCTT+TGG - Chr4:7384305-7384324 None:intergenic 50.0%
CAAGAACCTATGTGACAGCG+AGG - Chr4:7381022-7381041 None:intergenic 50.0%
CGCGAATTTCTTGACCGACA+AGG + Chr4:7383400-7383419 MsG0480018611.01.T01:CDS 50.0%
CTCTTGCTCAGCACATGGTT+TGG + Chr4:7382922-7382941 MsG0480018611.01.T01:intron 50.0%
TCATGCTCTTGCTCAGCACA+TGG + Chr4:7382917-7382936 MsG0480018611.01.T01:intron 50.0%
TCTGTACCTCGCTGTCACAT+AGG + Chr4:7381013-7381032 MsG0480018611.01.T01:intron 50.0%
TTGCTTCCCACTTTGCCTAG+TGG - Chr4:7382559-7382578 None:intergenic 50.0%
TTGGAGCTTCTCATCAGGCT+TGG + Chr4:7383597-7383616 MsG0480018611.01.T01:intron 50.0%
!! AGTCAACGAGTGATGGGCAT+TGG + Chr4:7380825-7380844 MsG0480018611.01.T01:CDS 50.0%
CATCAGGCTTGGCGACTACA+TGG + Chr4:7383608-7383627 MsG0480018611.01.T01:intron 55.0%
TACTCCAGAAGCTCGAAGCC+TGG - Chr4:7383958-7383977 None:intergenic 55.0%
TGCCAAAGGAGTCGAGCACA+TGG + Chr4:7384300-7384319 MsG0480018611.01.T01:CDS 55.0%
GCTACCAGGCTTCGAGCTTC+TGG + Chr4:7383951-7383970 MsG0480018611.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 7380819 7384591 7380819 ID=MsG0480018611.01;Name=MsG0480018611.01
Chr4 mRNA 7380819 7384591 7380819 ID=MsG0480018611.01.T01;Parent=MsG0480018611.01;Name=MsG0480018611.01.T01;_AED=0.13;_eAED=0.14;_QI=0|0|0|0.75|1|1|4|0|436
Chr4 exon 7380819 7380940 7380819 ID=MsG0480018611.01.T01:exon:1798;Parent=MsG0480018611.01.T01
Chr4 exon 7383201 7383488 7383201 ID=MsG0480018611.01.T01:exon:1799;Parent=MsG0480018611.01.T01
Chr4 exon 7383614 7383974 7383614 ID=MsG0480018611.01.T01:exon:1800;Parent=MsG0480018611.01.T01
Chr4 exon 7384052 7384591 7384052 ID=MsG0480018611.01.T01:exon:1801;Parent=MsG0480018611.01.T01
Chr4 CDS 7380819 7380940 7380819 ID=MsG0480018611.01.T01:cds;Parent=MsG0480018611.01.T01
Chr4 CDS 7383201 7383488 7383201 ID=MsG0480018611.01.T01:cds;Parent=MsG0480018611.01.T01
Chr4 CDS 7383614 7383974 7383614 ID=MsG0480018611.01.T01:cds;Parent=MsG0480018611.01.T01
Chr4 CDS 7384052 7384591 7384052 ID=MsG0480018611.01.T01:cds;Parent=MsG0480018611.01.T01
Gene Sequence

>MsG0480018611.01.T01

ATGAAAAGTCAACGAGTGATGGGCATTGGTGTGTTAAATGGACCATTATATTGTGGAGCCACTATGTTTGTATGCATTAATATTGTGGAGCCACATGAAAAGTCAACGAGTGATGGGCATTGTTGGATGGTTCCCATTGAAGTGATGTTAGGTTCTCTCAATCATGGCGAAGTTCAAGCATGTAGCATTTCCAACGTTCCAGATGAACTTCAAGAAGCAAACGAAGATGCTTACAAACCAAAAAATATATCCATAGGACCCTTACATAGAGGAACCACCAGACACCTTCAATTAATGGAAGAACCGAAATGGCATTACATGCGCGAATTTCTTGACCGACAAGGAACTATACCTGAACAAAATAGAACATCAGCGATAAGGTTAAGAGAATGTGGCGATGACATTCTCAGGCTTGGCGACTACATGGACAACCAAACTACAACATCATATAGCAATGACTCAATCCTTCAAACGGAGGAAAAGGTATTATCTGTTTTAAACGATGTAGTTATGCTTGAGAACCAAGTTCCCTTCATTGTTCTAAAGAAGTTATATCGAAAGGTATTTCCTGATGATAGTGAAATCAAAGATGATCACCGTGTTGCTAATATTGTCCGTAACACCTTTGGTTATCCTATGTTGAATATTTCCGGAGGTGCTCATATACTTCATTTGATGCACTTGTCCACAGTGGAGCAAAACCAACAACATGAAAGGAAAAAAGCGGCACCAGAATTATTTTACTGTGCTACCAGGCTTCGAGCTTCTGGATTTAATGATTTTGGGGAGCTTGATATTCCACCGTTACATGTTAAGGAAACAACAGAAGTGAAATGGAGAAATTTAATTGCTTGGGAGCAAAGCAAATTTTGGATTAAATGCAAATACACTTCCTATGCACTTTTCTTTAATGGTTTGATATGTTGTGTGCATGATATTGAATTACTTCGAGAAAAAGGTGTTATTGTAAATGAGTTGAACAAGAGCAATGAAGATTTGTTGACATTATTTCGAACGATTGCCAAAGGAGTCGAGCACATGGATATGAGTTATAGCGAGATTTGTGCAAGGTTGAATGTGTATGACTTCAAGGGGAAGAAAGTTACCAAAATTTTGCGAAAATGGCCTATATGCTCTTGGCATCAATGTAGGTGTTTTTTTGATAGTTGTGTTTACTATGGGCGAAACTGGTACAATATTTTGATACGTGACCATATACCTACGGTTTGGAAATTCGTAGGAGTAATCGCAGCTGTTGTGCTCCTCGTCCTTACTATCATGCAAACATATTACTCGTCCCGTAGTGGCTAG
Protein sequence

>MsG0480018611.01.T01

MKSQRVMGIGVLNGPLYCGATMFVCINIVEPHEKSTSDGHCWMVPIEVMLGSLNHGEVQACSISNVPDELQEANEDAYKPKNISIGPLHRGTTRHLQLMEEPKWHYMREFLDRQGTIPEQNRTSAIRLRECGDDILRLGDYMDNQTTTSYSNDSILQTEEKVLSVLNDVVMLENQVPFIVLKKLYRKVFPDDSEIKDDHRVANIVRNTFGYPMLNISGGAHILHLMHLSTVEQNQQHERKKAAPELFYCATRLRASGFNDFGELDIPPLHVKETTEVKWRNLIAWEQSKFWIKCKYTSYALFFNGLICCVHDIELLREKGVIVNELNKSNEDLLTLFRTIAKGVEHMDMSYSEICARLNVYDFKGKKVTKILRKWPICSWHQCRCFFDSCVYYGRNWYNILIRDHIPTVWKFVGVIAAVVLLVLTIMQTYYSSRSG*