AlfalfaGEDB | MsG0880043109.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043109.01

KEGG: K13425
GO: GO:0003700 GO:0006355 GO:0043565
PFAM: PF03106

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043109.01.T01	XP_013444773.1	96.517	201	7	0	8	208	138	338	3.97E-142	410

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043109.01.T01	O04609	59.016	183	60	3	8	187	111	281	3.69E-67	211

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043109.01.T01	A0A072TPN3	96.517	201	7	0	8	208	138	338	1.90e-142	410

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TFs/TRs:

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Gene ID	Type	Classification
MsG0880043109.01.T01	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048692.01	MsG0880043109.01	-0.805311	1.419538e-49	7.485562e-47
MsG0080048694.01	MsG0880043109.01	-0.831708	1.431849e-55	1.566492e-52
MsG0080048695.01	MsG0880043109.01	-0.831453	1.654974e-55	1.796797e-52
MsG0080048697.01	MsG0880043109.01	-0.800336	1.511786e-48	7.021262e-46
MsG0080048889.01	MsG0880043109.01	0.826974	2.020650e-54	1.924509e-51
MsG0080049019.01	MsG0880043109.01	-0.813676	2.268572e-51	1.491115e-48
MsG0080049023.01	MsG0880043109.01	-0.819241	1.287674e-52	9.855024e-50
MsG0080049038.01	MsG0880043109.01	-0.810714	1.004525e-50	6.100222e-48
MsG0080049066.01	MsG0880043109.01	-0.837445	5.177601e-57	6.727115e-54
MsG0080049076.01	MsG0880043109.01	-0.827180	1.804115e-54	1.728666e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043109.01.T01	MTR_8g028565	96.517	201	7	0	8	208	138	338	4.81e-146	410
MsG0880043109.01.T01	MTR_7g079040	60.914	197	55	4	8	203	137	312	3.07e-75	230
MsG0880043109.01.T01	MTR_2g032030	45.128	195	76	5	8	176	240	429	4.56e-46	159
MsG0880043109.01.T01	MTR_2g032030	48.795	166	62	3	8	154	240	401	1.78e-45	156
MsG0880043109.01.T01	MTR_1g099600	68.269	104	31	1	11	114	171	272	6.00e-45	152
MsG0880043109.01.T01	MTR_8g098945	66.304	92	26	1	26	117	130	216	8.84e-39	135
MsG0880043109.01.T01	MTR_7g109600	59.794	97	34	2	15	109	43	136	9.26e-36	127
MsG0880043109.01.T01	MTR_2g016770	60.000	90	29	2	6	89	3	91	2.88e-32	116
MsG0880043109.01.T01	MTR_2g016770	59.091	88	30	1	8	89	12	99	4.57e-32	115
MsG0880043109.01.T01	MTR_8g087000	61.644	73	28	0	25	97	77	149	2.63e-29	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043109.01.T01	AT4G01250	59.016	183	60	3	8	187	111	281	3.76e-68	211
MsG0880043109.01.T01	AT5G52830	57.047	149	49	4	8	153	147	283	7.66e-49	163
MsG0880043109.01.T01	AT1G30650	43.925	214	86	7	8	194	190	396	3.94e-43	150
MsG0880043109.01.T01	AT2G34830	42.927	205	79	6	8	178	188	388	1.96e-41	145
MsG0880043109.01.T01	AT2G34830	42.927	205	79	6	8	178	197	397	2.57e-41	145
MsG0880043109.01.T01	AT4G23550	61.739	115	39	2	11	124	125	235	1.89e-40	140
MsG0880043109.01.T01	AT5G45050	62.651	83	31	0	11	93	1166	1248	6.87e-34	128
MsG0880043109.01.T01	AT5G45050	62.651	83	31	0	11	93	1138	1220	6.92e-34	128
MsG0880043109.01.T01	AT5G45050	62.651	83	31	0	11	93	1027	1109	7.62e-34	127
MsG0880043109.01.T01	AT1G29280	69.863	73	17	1	25	97	74	141	2.54e-32	117

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Find 43 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTAGCATCATCTGG+TGG	0.715149	8:-19161676	MsG0880043109.01.T01:CDS
AATGATGAATGATGATGATG+AGG	0.613568	8:-19161779	MsG0880043109.01.T01:CDS
AATTTCTGTGAGTTGGAGCA+GGG	0.599997	8:+19161974	None:intergenic
ACAATTTCAATTTAAAGTGT+CGG	0.521000	8:-19161433	MsG0880043109.01.T01:three_prime_UTR
ACACATTGACATGTCAATTT+CGG	0.377911	8:-19161534	MsG0880043109.01.T01:three_prime_UTR
ACTCACAGAAATTCTCTTGC+TGG	0.378623	8:-19161964	MsG0880043109.01.T01:CDS
AGAAGCTCTCATCAGACATA+TGG	0.410207	8:-19162601	MsG0880043109.01.T01:CDS
AGAGCAATACTAGCAGCAAA+AGG	0.441287	8:+19161637	None:intergenic
AGTATTGCTCTTCCTGCATG+TGG	0.612374	8:-19161625	MsG0880043109.01.T01:CDS
ATATGGGCATGGAGGAAATA+TGG	0.384293	8:-19162584	MsG0880043109.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACATTGACATGTCAATTT+CGG	-	Chr8:19162544-19162563	MsG0880043109.01.T01:intron	30.0%
ATGGTCAAAAACCAATCAAA+GGG	-	Chr8:19161513-19161532	MsG0880043109.01.T01:three_prime_UTR	30.0%
ATGTTCATAGTTACATACAC+TGG	-	Chr8:19162069-19162088	MsG0880043109.01.T01:CDS	30.0%
GTAACAGATGATTTCTTTGA+AGG	-	Chr8:19162351-19162370	MsG0880043109.01.T01:intron	30.0%
TATGGTCAAAAACCAATCAA+AGG	-	Chr8:19161512-19161531	MsG0880043109.01.T01:three_prime_UTR	30.0%
TACAGATGTAGCAGTTCAAA+AGG	-	Chr8:19162000-19162019	MsG0880043109.01.T01:CDS	35.0%
TAGGAAGATTCAGCATAAGA+AGG	-	Chr8:19161436-19161455	MsG0880043109.01.T01:three_prime_UTR	35.0%
TCAGACATTTGTGTCTATGT+CGG	+	Chr8:19162514-19162533	None:intergenic	35.0%
AAAACAGTAGCATCATCTGG+TGG	-	Chr8:19162402-19162421	MsG0880043109.01.T01:intron	40.0%
ACTCACAGAAATTCTCTTGC+TGG	-	Chr8:19162114-19162133	MsG0880043109.01.T01:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	19161416	19162684	19161416	ID=MsG0880043109.01;Name=MsG0880043109.01
Chr8	mRNA	19161416	19162684	19161416	ID=MsG0880043109.01.T01;Parent=MsG0880043109.01;Name=MsG0880043109.01.T01;_AED=0.33;_eAED=0.35;_QI=0\|1\|0.5\|1\|1\|1\|2\|199\|208
Chr8	exon	19161416	19162107	19161416	ID=MsG0880043109.01.T01:exon:5040;Parent=MsG0880043109.01.T01
Chr8	exon	19162551	19162684	19162551	ID=MsG0880043109.01.T01:exon:5039;Parent=MsG0880043109.01.T01
Chr8	CDS	19162551	19162684	19162551	ID=MsG0880043109.01.T01:cds;Parent=MsG0880043109.01.T01
Chr8	CDS	19161615	19162107	19161615	ID=MsG0880043109.01.T01:cds;Parent=MsG0880043109.01.T01
Chr8	three_prime_UTR	19161416	19161614	19161416	ID=MsG0880043109.01.T01:three_prime_utr;Parent=MsG0880043109.01.T01

Gene Sequence

>MsG0880043109.01.T01

ATGCATGTTTTTGCTAATTATAGGAAGATTCAGCATAAGAAGGTTTGTGAAGTGCAAGCTGAGAAGCTCTCATCAGACATATGGGCATGGAGGAAATATGGTCAAAAACCAATCAAAGGGTCACCATATCCAAGGGGATATTACAGATGTAGCAGTTCAAAAGGATGTTCAGCTAAGAAACAAGTTGAGAGGAACAAATCAGACCCATCAATGTTCATAGTTACATACACTGGTGAACACAGTCACCCTGCTCCAACTCACAGAAATTCTCTTGCTGGTTCAACAAGACAGAAGCCATTGTCACCACAAACTGACACTGCTGAAGACTCTTCCCAACAACCTTTTACAAAACAAGTTTCATCATCCACATCAGAAGCTGAAGAGGAAGAGGCTACAACACTCTTAAGTGTAAAGTCAGAGAGCAAAGATGATTTGGAAGAAATGATGAATGATGATGATGAGGAAAATGAATTTGAGTTATCTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAACTGACAGGTTTTGCTGGAAAAACAGTAGCATCATCTGGTGGTGACTGTTTTGGTGACCCTTTTGCTGCTAGTATTGCTCTTCCTGCATGTGGTGGCCAATGA

Protein sequence

>MsG0880043109.01.T01

MHVFANYRKIQHKKVCEVQAEKLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSAKKQVERNKSDPSMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLSPQTDTAEDSSQQPFTKQVSSSTSEAEEEEATTLLSVKSESKDDLEEMMNDDDEENEFELSDMVVTDDFFEGLDELTGFAGKTVASSGGDCFGDPFAASIALPACGGQ*