AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018917.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018917.01.T01 MTR_4g020040 84.146 246 12 3 18 251 1 231 1.28e-141 400
MsG0480018917.01.T01 MTR_4g020040 84.146 246 12 3 18 251 1 231 5.62e-141 397
MsG0480018917.01.T01 MTR_7g065890 67.063 252 56 3 12 251 30 266 1.56e-115 335
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018917.01.T01 AT3G54020 65.447 246 58 3 18 251 1 231 9.60e-112 323
MsG0480018917.01.T01 AT2G37940 65.854 246 56 4 18 251 1 230 1.11e-109 318
MsG0480018917.01.T01 AT2G37940 65.854 246 56 4 18 251 1 230 1.11e-109 318
MsG0480018917.01.T01 AT2G29525 61.789 246 67 3 18 251 1 231 1.81e-102 298
MsG0480018917.01.T01 AT2G29525 61.789 246 67 3 18 251 1 231 2.40e-102 299
MsG0480018917.01.T01 AT2G29525 61.789 246 67 3 18 251 1 231 2.40e-102 299
MsG0480018917.01.T01 AT2G29525 61.789 246 67 3 18 251 1 231 2.40e-102 299
MsG0480018917.01.T01 AT2G29525 53.459 159 47 3 18 164 1 144 6.78e-48 157

Find 59 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCCACCCGAGCTGCTTTA+TGG 0.168539 4:-11728504 None:intergenic
TGTTGGATTCTTCCTTCTTC+CGG 0.330635 4:+11726414 MsG0480018917.01.T01:CDS
GTACGTACATATCAGAAATA+TGG 0.333783 4:+11728294 MsG0480018917.01.T01:CDS
AGCATATTTCTTATTACATA+TGG 0.334517 4:+11727861 MsG0480018917.01.T01:intron
AATCCAACATCTTGAAGAAT+AGG 0.335204 4:-11726400 None:intergenic
TCAAGCTTCTTGCAGAGAAT+TGG 0.336508 4:+11725063 MsG0480018917.01.T01:CDS
TCTAGCTGGTCTTGTTTGTC+AGG 0.341522 4:+11725094 MsG0480018917.01.T01:CDS
ACCTCACGGCAATGGTAGTT+TGG 0.357521 4:-11727959 None:intergenic
GTTCCGCATGGCGTGTTATA+TGG 0.369388 4:+11728222 MsG0480018917.01.T01:intron
AAAACTTCAAGGAAACTATC+TGG 0.380533 4:-11728109 None:intergenic
GGCCCTATTCTTCAAGATGT+TGG 0.381446 4:+11726397 MsG0480018917.01.T01:CDS
CACCATGTATGTACTGCATA+TGG 0.405188 4:-11726339 None:intergenic
ATCCAACATCTTGAAGAATA+GGG 0.408007 4:-11726399 None:intergenic
CAAAGAGTCCAATGTGAAAA+GGG 0.428919 4:-11724589 None:intergenic
ATGAAAATAATGAACACTTC+GGG 0.434463 4:-11726368 None:intergenic
TATCTTTATATCCTTTGCCT+TGG 0.452265 4:+11726583 MsG0480018917.01.T01:CDS
ACTCGATATCTAAATCTAAA+CGG 0.460076 4:+11726313 MsG0480018917.01.T01:CDS
TCAAAGAGTCCAATGTGAAA+AGG 0.460494 4:-11724590 None:intergenic
CATTGGTCGTGAGGCTTCAA+AGG 0.462934 4:+11724889 MsG0480018917.01.T01:CDS
GACGTAGTTGTCGCCTGGTA+AGG 0.469480 4:+11728581 MsG0480018917.01.T01:CDS
TTCACATTGGACTCTTTGAT+CGG 0.493659 4:+11724594 MsG0480018917.01.T01:five_prime_UTR
GGGCTTAATAATAGTCGAAA+GGG 0.500650 4:-11724568 None:intergenic
CCAGATCCATAAAGCAGCTC+GGG 0.502477 4:+11728498 MsG0480018917.01.T01:intron
TTGGGTATCCGAATCTGAAT+CGG 0.502907 4:-11724679 None:intergenic
TTCAAGGAAACTATCTGGAC+GGG 0.504570 4:-11728104 None:intergenic
GAAAATTACTAACCGGAAGA+AGG 0.507864 4:-11726426 None:intergenic
TGGTATGAACGTGGCGAGAA+CGG 0.511715 4:-11724437 None:intergenic
TATGAAAATAATGAACACTT+CGG 0.533279 4:-11726369 None:intergenic
TAAGAAAGGAAAGGAGTAGA+GGG 0.534044 4:-11724413 None:intergenic
TTCCATATGCAGTACATACA+TGG 0.534449 4:+11726337 MsG0480018917.01.T01:CDS
TGCAATTGCAATGTTGTGAC+TGG 0.534912 4:-11724457 None:intergenic
TTGATGCTTTGGCAGGAACT+CGG 0.535586 4:+11726521 MsG0480018917.01.T01:intron
ATTGTGTGTATGTTCACTGC+AGG 0.539255 4:+11727886 MsG0480018917.01.T01:CDS
AATTGGAAGTATCTTCTAGC+TGG 0.540807 4:+11725080 MsG0480018917.01.T01:CDS
AGTTAATCACGAAAACTTCA+AGG 0.542211 4:-11728120 None:intergenic
AGTAGAAAGAGCTCCTTACC+AGG 0.545225 4:-11728594 None:intergenic
CGGCAATGGTAGTTTGGACC+AGG 0.546032 4:-11727953 None:intergenic
ACATCTTGAAGAATAGGGCC+AGG 0.549791 4:-11726394 None:intergenic
ACCAGATCCATAAAGCAGCT+CGG 0.553598 4:+11728497 MsG0480018917.01.T01:intron
TTAAGAAAGGAAAGGAGTAG+AGG 0.558367 4:-11724414 None:intergenic
GCAATTTCTTACCAAGGCAA+AGG 0.565542 4:-11726594 None:intergenic
AGCATCTCGCAAACATTACA+CGG 0.566819 4:+11728556 MsG0480018917.01.T01:CDS
GGGGCTTAATAATAGTCGAA+AGG 0.569190 4:-11724569 None:intergenic
CGGTTGACGTAGTTGTCGCC+TGG 0.588145 4:+11728576 MsG0480018917.01.T01:CDS
GTGGCGAGAACGGTTAAGAA+AGG 0.594541 4:-11724427 None:intergenic
ATCAGAAATATGGCACTCGA+AGG 0.602949 4:+11728304 MsG0480018917.01.T01:CDS
CTTCAAGGAAACTATCTGGA+CGG 0.604774 4:-11728105 None:intergenic
GATCCATAAAGCAGCTCGGG+TGG 0.617816 4:+11728501 MsG0480018917.01.T01:intron
AATCAAAAGACTCTGAATCA+CGG 0.640459 4:-11728531 None:intergenic
AAAGAGTCCAATGTGAAAAG+GGG 0.641854 4:-11724588 None:intergenic
ACTATCTGGACGGGGCAATG+TGG 0.653488 4:-11728095 None:intergenic
CAAATCATACCTCACGGCAA+TGG 0.657286 4:-11727967 None:intergenic
TCAAGGAAACTATCTGGACG+GGG 0.668994 4:-11728103 None:intergenic
CATCCATATAACACGCCATG+CGG 0.672113 4:-11728225 None:intergenic
TATGCAGTACATACATGGTG+TGG 0.674913 4:+11726342 MsG0480018917.01.T01:CDS
CATGGCGTGTTATATGGATG+CGG 0.685691 4:+11728228 MsG0480018917.01.T01:CDS
GAGAACGGTTAAGAAAGGAA+AGG 0.713131 4:-11724422 None:intergenic
TCCAAACTACCATTGCCGTG+AGG 0.747588 4:+11727958 MsG0480018917.01.T01:CDS
TGTTGTGACTGGTATGAACG+TGG 0.757853 4:-11724446 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATAAATAATTAAACTAA+TGG - Chr4:11726072-11726091 None:intergenic 10.0%
!!! ATGAATAATTTTATAATTAG+AGG + Chr4:11725384-11725403 MsG0480018917.01.T01:intron 10.0%
!!! ATTTTAAAATAAAATTGCAT+CGG + Chr4:11727039-11727058 MsG0480018917.01.T01:intron 10.0%
!!! TTTTATTTTAAAATTGAATG+TGG - Chr4:11727033-11727052 None:intergenic 10.0%
!! AAAATAAGAAAGGATAATTA+TGG - Chr4:11727308-11727327 None:intergenic 15.0%
!! AAATAAGAAAGGATAATTAT+GGG - Chr4:11727307-11727326 None:intergenic 15.0%
!! CAAAATATACTTCATAAAAT+TGG - Chr4:11726000-11726019 None:intergenic 15.0%
!! TAATCCAAATGAAATAAATA+AGG - Chr4:11727443-11727462 None:intergenic 15.0%
!!! AATTTTATAATTAGAGGTTT+TGG + Chr4:11725390-11725409 MsG0480018917.01.T01:intron 15.0%
!!! ATTTTATAATTAGAGGTTTT+GGG + Chr4:11725391-11725410 MsG0480018917.01.T01:intron 15.0%
!!! TTTAAGATGGAATTAATAAT+TGG - Chr4:11725817-11725836 None:intergenic 15.0%
!! AAAAAATAAAAAATGCCACA+TGG + Chr4:11727254-11727273 MsG0480018917.01.T01:intron 20.0%
!! AAAAATAAAAAATGCCACAT+GGG + Chr4:11727255-11727274 MsG0480018917.01.T01:intron 20.0%
!! AAATAATCATTGTCCAAAAT+CGG - Chr4:11727362-11727381 None:intergenic 20.0%
!! AATAGAGTTAAAATTCTTGA+GGG + Chr4:11725437-11725456 MsG0480018917.01.T01:intron 20.0%
!! ACATATCAAAGAATTTATTG+TGG - Chr4:11727563-11727582 None:intergenic 20.0%
!! AGCATATTTCTTATTACATA+TGG + Chr4:11727861-11727880 MsG0480018917.01.T01:intron 20.0%
!! AGTAATGTTTGTATTTAAGA+TGG - Chr4:11725830-11725849 None:intergenic 20.0%
!! ATAAAATGTGCTAAATAGAA+TGG + Chr4:11726472-11726491 MsG0480018917.01.T01:intron 20.0%
!! ATCAAGATTAGAAATTACAA+AGG - Chr4:11726506-11726525 None:intergenic 20.0%
!! GTGCATATATTATCTATAAA+AGG - Chr4:11726843-11726862 None:intergenic 20.0%
!! GTTAGTATACATTATTGTAT+TGG + Chr4:11728143-11728162 MsG0480018917.01.T01:intron 20.0%
!! TATGAAAATAATGAACACTT+CGG - Chr4:11726372-11726391 None:intergenic 20.0%
!! TCAAAAGAGATTTAGAAAAT+AGG - Chr4:11727469-11727488 None:intergenic 20.0%
!! TTATAGATAATATATGCACA+GGG + Chr4:11726844-11726863 MsG0480018917.01.T01:intron 20.0%
!! TTTATAGATAATATATGCAC+AGG + Chr4:11726843-11726862 MsG0480018917.01.T01:intron 20.0%
!!! AAAGTTTCATTTTTGCAAAT+TGG + Chr4:11724739-11724758 MsG0480018917.01.T01:five_prime_UTR 20.0%
!!! AACACCTTATTTATTTCATT+TGG + Chr4:11727436-11727455 MsG0480018917.01.T01:intron 20.0%
!!! AAGTTTCATTTTTGCAAATT+GGG + Chr4:11724740-11724759 MsG0480018917.01.T01:five_prime_UTR 20.0%
!!! AATAACATGTCTTTTTACAT+TGG + Chr4:11724872-11724891 MsG0480018917.01.T01:CDS 20.0%
!!! AATTATCCTTTCTTATTTTG+TGG + Chr4:11727309-11727328 MsG0480018917.01.T01:intron 20.0%
!!! ATGTTTTTGGAAATTGTTTA+TGG + Chr4:11725232-11725251 MsG0480018917.01.T01:intron 20.0%
!!! ATTATCCTTTCTTATTTTGT+GGG + Chr4:11727310-11727329 MsG0480018917.01.T01:intron 20.0%
!!! ATTATTTACTCTCTGTTTTT+TGG + Chr4:11727375-11727394 MsG0480018917.01.T01:intron 20.0%
!!! GTTTGTATTAACTTCTTTTA+AGG - Chr4:11727745-11727764 None:intergenic 20.0%
!!! TATTTATTTTCCTTCTTTTG+AGG + Chr4:11727534-11727553 MsG0480018917.01.T01:intron 20.0%
!!! TGTTTGTTTTGATTTATGTT+TGG + Chr4:11724982-11725001 MsG0480018917.01.T01:intron 20.0%
!!! TGTTTTAATGAGAGAATTAA+AGG + Chr4:11725697-11725716 MsG0480018917.01.T01:intron 20.0%
!!! TGTTTTTGGAAATTGTTTAT+GGG + Chr4:11725233-11725252 MsG0480018917.01.T01:intron 20.0%
!!! TTCTATTTAGCACATTTTAT+AGG - Chr4:11726472-11726491 None:intergenic 20.0%
!!! TTGTTACTTTTGAACTAATA+TGG + Chr4:11724808-11724827 MsG0480018917.01.T01:exon 20.0%
!!! TTTATGTTTTTGTTTTGATG+TGG + Chr4:11725203-11725222 MsG0480018917.01.T01:intron 20.0%
!!! TTTTTTTTTGTGTGTAGTTA+TGG + Chr4:11725009-11725028 MsG0480018917.01.T01:intron 20.0%
! AAAATAAAAAATGCCACATG+GGG + Chr4:11727256-11727275 MsG0480018917.01.T01:intron 25.0%
! AATTTCTAATCTTGATGCTT+TGG + Chr4:11726510-11726529 MsG0480018917.01.T01:intron 25.0%
! ACATTACTCTCAATTATATG+TGG + Chr4:11725842-11725861 MsG0480018917.01.T01:intron 25.0%
! ACTCGATATCTAAATCTAAA+CGG + Chr4:11726313-11726332 MsG0480018917.01.T01:CDS 25.0%
! AGAAAATAACCTATCACAAT+AGG - Chr4:11726688-11726707 None:intergenic 25.0%
! ATAAACCCACAAAATAAGAA+AGG - Chr4:11727318-11727337 None:intergenic 25.0%
! ATGAAAATAATGAACACTTC+GGG - Chr4:11726371-11726390 None:intergenic 25.0%
! CAATAGAGTTAAAATTCTTG+AGG + Chr4:11725436-11725455 MsG0480018917.01.T01:intron 25.0%
! TATAGATAATATATGCACAG+GGG + Chr4:11726845-11726864 MsG0480018917.01.T01:intron 25.0%
! TTAATATTCCTATTCAGTTG+AGG - Chr4:11728347-11728366 None:intergenic 25.0%
! TTGAATGTAATCACATCTTT+CGG - Chr4:11726185-11726204 None:intergenic 25.0%
!! GATTTTTATGGAAAATAGTC+AGG + Chr4:11725934-11725953 MsG0480018917.01.T01:intron 25.0%
!! TTTTCATTCATCACACAAAA+GGG - Chr4:11725178-11725197 None:intergenic 25.0%
!! TTTTGTAGAATGCAAGTTAA+GGG - Chr4:11725554-11725573 None:intergenic 25.0%
!! TTTTTGTAGAATGCAAGTTA+AGG - Chr4:11725555-11725574 None:intergenic 25.0%
!!! GTTTTAGTTTTGATTCCTTT+TGG + Chr4:11728167-11728186 MsG0480018917.01.T01:intron 25.0%
!!! GTTTTTGGAAATTGTTTATG+GGG + Chr4:11725234-11725253 MsG0480018917.01.T01:intron 25.0%
AAAACTTCAAGGAAACTATC+TGG - Chr4:11728112-11728131 None:intergenic 30.0%
AAACGAAGCCTGAAATAAAA+AGG - Chr4:11727699-11727718 None:intergenic 30.0%
AAATTGTTTATGGGGTTGTT+GGG + Chr4:11725242-11725261 MsG0480018917.01.T01:intron 30.0%
AACTTGTAGAGTGAAATCAT+GGG + Chr4:11725304-11725323 MsG0480018917.01.T01:intron 30.0%
AATCAAAAGACTCTGAATCA+CGG - Chr4:11728534-11728553 None:intergenic 30.0%
AATCCAACATCTTGAAGAAT+AGG - Chr4:11726403-11726422 None:intergenic 30.0%
AATGTGCTAAATAGAATGGT+AGG + Chr4:11726476-11726495 MsG0480018917.01.T01:intron 30.0%
ACAACAACAACATGGAAATT+AGG - Chr4:11726738-11726757 None:intergenic 30.0%
AGAGAAAGGGAATGATAAAA+GGG + Chr4:11727222-11727241 MsG0480018917.01.T01:intron 30.0%
AGATCTACACAGTTCTTATT+TGG + Chr4:11727627-11727646 MsG0480018917.01.T01:intron 30.0%
AGGGAATGAAAATTACTAAC+CGG - Chr4:11726436-11726455 None:intergenic 30.0%
AGTTAATCACGAAAACTTCA+AGG - Chr4:11728123-11728142 None:intergenic 30.0%
ATCCAACATCTTGAAGAATA+GGG - Chr4:11726402-11726421 None:intergenic 30.0%
CAATACATGATACTATCTTG+TGG + Chr4:11725606-11725625 MsG0480018917.01.T01:intron 30.0%
CATATAAACCTCAACTGAAT+AGG + Chr4:11728336-11728355 MsG0480018917.01.T01:intron 30.0%
CTAAACCATAATAGATCCTA+TGG - Chr4:11726924-11726943 None:intergenic 30.0%
GATAATATCAATGTCTTGTC+CGG + Chr4:11726242-11726261 MsG0480018917.01.T01:intron 30.0%
GGAAGTTGTAAATACTTTGA+AGG + Chr4:11725718-11725737 MsG0480018917.01.T01:intron 30.0%
GGAGAAGTTAAAAATAAGTC+AGG - Chr4:11727724-11727743 None:intergenic 30.0%
GTACGTACATATCAGAAATA+TGG + Chr4:11728294-11728313 MsG0480018917.01.T01:CDS 30.0%
TAAACATGCCAAATATGTGA+TGG - Chr4:11728441-11728460 None:intergenic 30.0%
TATAGGTGACAGAAAAGAAA+GGG - Chr4:11726455-11726474 None:intergenic 30.0%
TATCTTTATATCCTTTGCCT+TGG + Chr4:11726583-11726602 MsG0480018917.01.T01:CDS 30.0%
TATTCTGATTATTGTGACTG+TGG + Chr4:11728467-11728486 MsG0480018917.01.T01:intron 30.0%
TTAAAATTGAATGTGGCACA+TGG - Chr4:11727026-11727045 None:intergenic 30.0%
TTATAGGTGACAGAAAAGAA+AGG - Chr4:11726456-11726475 None:intergenic 30.0%
TTGTTAAAGTCTTCCAATGA+CGG - Chr4:11725905-11725924 None:intergenic 30.0%
TTTCTGCTCTTGAATATGAA+AGG - Chr4:11727608-11727627 None:intergenic 30.0%
! ATAATGCATGCTGTGTTTTA+AGG + Chr4:11727998-11728017 MsG0480018917.01.T01:intron 30.0%
! CTTTTCATTCATCACACAAA+AGG - Chr4:11725179-11725198 None:intergenic 30.0%
! CTTTTGTGTGATGAATGAAA+AGG + Chr4:11725177-11725196 MsG0480018917.01.T01:intron 30.0%
! GTTCATTATTTTCATAAGCC+TGG + Chr4:11726376-11726395 MsG0480018917.01.T01:CDS 30.0%
! TAAATCTCTTTTGACCAGTA+TGG + Chr4:11727475-11727494 MsG0480018917.01.T01:intron 30.0%
! TAACTTGTAGAGTGAAATCA+TGG + Chr4:11725303-11725322 MsG0480018917.01.T01:intron 30.0%
! TTCTTTTTCCGATTCAGATT+CGG + Chr4:11724671-11724690 MsG0480018917.01.T01:five_prime_UTR 30.0%
! TTTGATATGTACTTTTGCAG+TGG + Chr4:11727573-11727592 MsG0480018917.01.T01:intron 30.0%
! TTTTATTCTACACAACTACC+TGG + Chr4:11727935-11727954 MsG0480018917.01.T01:CDS 30.0%
!! CAATATGCAGCTGATTTTTA+TGG + Chr4:11725922-11725941 MsG0480018917.01.T01:intron 30.0%
!! CATCATGTCCTTTTTATTTC+AGG + Chr4:11727688-11727707 MsG0480018917.01.T01:intron 30.0%
!! TAATGCATGCTGTGTTTTAA+GGG + Chr4:11727999-11728018 MsG0480018917.01.T01:intron 30.0%
!! TGTTTTTCATCAAGTTGTTC+AGG + Chr4:11725582-11725601 MsG0480018917.01.T01:intron 30.0%
!! TTTTTATTTCAGGCTTCGTT+TGG + Chr4:11727698-11727717 MsG0480018917.01.T01:intron 30.0%
!!! TGGGTTTATGTTTTTTCCAA+AGG + Chr4:11727329-11727348 MsG0480018917.01.T01:intron 30.0%
!!! TTATTCATCCAAGCGTTTTT+TGG - Chr4:11725372-11725391 None:intergenic 30.0%
!!! TTTTTTCCCCTCTATGTTTT+TGG + Chr4:11725119-11725138 MsG0480018917.01.T01:intron 30.0%
AAAGAGTCCAATGTGAAAAG+GGG - Chr4:11724591-11724610 None:intergenic 35.0%
AACCACCATAGGATCTATTA+TGG + Chr4:11726916-11726935 MsG0480018917.01.T01:intron 35.0%
AACCATAATAGATCCTATGG+TGG - Chr4:11726921-11726940 None:intergenic 35.0%
AACCATCACCAAAAACATAG+AGG - Chr4:11725130-11725149 None:intergenic 35.0%
ACAGGAGAAAAAATGAAGCA+GGG - Chr4:11727826-11727845 None:intergenic 35.0%
ACCAAACAAATCATACCTCA+CGG - Chr4:11727976-11727995 None:intergenic 35.0%
ACCATCACCAAAAACATAGA+GGG - Chr4:11725129-11725148 None:intergenic 35.0%
AGTTGACATTAGATGATGCA+CGG + Chr4:11725775-11725794 MsG0480018917.01.T01:intron 35.0%
ATAAGTGACAAATCGCCAAA+AGG - Chr4:11728185-11728204 None:intergenic 35.0%
ATGGAAAATAGTCAGGACAA+AGG + Chr4:11725941-11725960 MsG0480018917.01.T01:intron 35.0%
CAAAGAGTCCAATGTGAAAA+GGG - Chr4:11724592-11724611 None:intergenic 35.0%
CATTATAATTGCAGTGCAGA+AGG - Chr4:11725755-11725774 None:intergenic 35.0%
CCAGAAAGAAAAACGCAATT+GGG - Chr4:11724700-11724719 None:intergenic 35.0%
CTAGCACAAATACATCACAT+TGG + Chr4:11726123-11726142 MsG0480018917.01.T01:intron 35.0%
CTCAATTATATGTGGACCTT+GGG + Chr4:11725850-11725869 MsG0480018917.01.T01:intron 35.0%
GAAAATTACTAACCGGAAGA+AGG - Chr4:11726429-11726448 None:intergenic 35.0%
GAAATTGTTTATGGGGTTGT+TGG + Chr4:11725241-11725260 MsG0480018917.01.T01:intron 35.0%
GAGAGAAAGGGAATGATAAA+AGG + Chr4:11727221-11727240 MsG0480018917.01.T01:intron 35.0%
GGGCTTAATAATAGTCGAAA+GGG - Chr4:11724571-11724590 None:intergenic 35.0%
TAAGAAAGGAAAGGAGTAGA+GGG - Chr4:11724416-11724435 None:intergenic 35.0%
TACAGGAGAAAAAATGAAGC+AGG - Chr4:11727827-11727846 None:intergenic 35.0%
TCAAAGAGTCCAATGTGAAA+AGG - Chr4:11724593-11724612 None:intergenic 35.0%
TCAATTATATGTGGACCTTG+GGG + Chr4:11725851-11725870 MsG0480018917.01.T01:intron 35.0%
TCACAAAAACTAAGCCATAC+TGG - Chr4:11727492-11727511 None:intergenic 35.0%
TCTCAATTATATGTGGACCT+TGG + Chr4:11725849-11725868 MsG0480018917.01.T01:intron 35.0%
TGGGAAATTAGTGACATGTT+TGG + Chr4:11725261-11725280 MsG0480018917.01.T01:intron 35.0%
TTAAGAAAGGAAAGGAGTAG+AGG - Chr4:11724417-11724436 None:intergenic 35.0%
TTCACATTGGACTCTTTGAT+CGG + Chr4:11724594-11724613 MsG0480018917.01.T01:five_prime_UTR 35.0%
TTCCATATGCAGTACATACA+TGG + Chr4:11726337-11726356 MsG0480018917.01.T01:CDS 35.0%
TTGGTAAGAAATTGCTGTCT+CGG + Chr4:11726602-11726621 MsG0480018917.01.T01:intron 35.0%
! AGTTTAGAACTTTGACGTCA+AGG - Chr4:11726813-11726832 None:intergenic 35.0%
! CCAATTGCGTTTTTCTTTCT+GGG + Chr4:11724698-11724717 MsG0480018917.01.T01:five_prime_UTR 35.0%
! GATGTGGAGTTGAATGTTTT+TGG + Chr4:11725219-11725238 MsG0480018917.01.T01:intron 35.0%
! TATTAAGCCCCTTTTCACAT+TGG + Chr4:11724581-11724600 MsG0480018917.01.T01:five_prime_UTR 35.0%
! TTGTTATTGTGAGAGACAAG+AGG + Chr4:11726886-11726905 MsG0480018917.01.T01:intron 35.0%
! TTTTAATATGCAGTTCCGCA+TGG + Chr4:11728210-11728229 MsG0480018917.01.T01:intron 35.0%
!! AAGTATCAGGGTTGGTTTAT+TGG + Chr4:11725666-11725685 MsG0480018917.01.T01:intron 35.0%
!! AATTGGAAGTATCTTCTAGC+TGG + Chr4:11725080-11725099 MsG0480018917.01.T01:CDS 35.0%
!! ATGAAGTACTGACACAAACA+CGG - Chr4:11726271-11726290 None:intergenic 35.0%
!!! ATCCAAGCGTTTTTTGGATA+CGG - Chr4:11725366-11725385 None:intergenic 35.0%
!!! GCTTCATTTTTTCTCCTGTA+TGG + Chr4:11727827-11727846 MsG0480018917.01.T01:intron 35.0%
AAATGCTTCACTACCGTCAT+TGG + Chr4:11725889-11725908 MsG0480018917.01.T01:intron 40.0%
AACAATTCCTCTCACTCGAT+AGG - Chr4:11726871-11726890 None:intergenic 40.0%
ACTCTACTAATGTATCGAGC+AGG + Chr4:11728060-11728079 MsG0480018917.01.T01:intron 40.0%
AGCATCTCGCAAACATTACA+CGG + Chr4:11728556-11728575 MsG0480018917.01.T01:CDS 40.0%
ATAAAAAATGCCACATGGGG+TGG + Chr4:11727259-11727278 MsG0480018917.01.T01:intron 40.0%
ATCAGAAATATGGCACTCGA+AGG + Chr4:11728304-11728323 MsG0480018917.01.T01:CDS 40.0%
ATCATGTCAAGTATCAGGGT+TGG + Chr4:11725658-11725677 MsG0480018917.01.T01:intron 40.0%
ATTGTGGCAACCTCAAAAGA+AGG - Chr4:11727547-11727566 None:intergenic 40.0%
ATTGTGTGTATGTTCACTGC+AGG + Chr4:11727886-11727905 MsG0480018917.01.T01:CDS 40.0%
CAAAATCGGTATTCGACCTT+TGG - Chr4:11727348-11727367 None:intergenic 40.0%
CACCATGTATGTACTGCATA+TGG - Chr4:11726342-11726361 None:intergenic 40.0%
CAGAACACACAACAACAACA+TGG - Chr4:11726746-11726765 None:intergenic 40.0%
CATAGTACGCCTATTGTGAT+AGG + Chr4:11726676-11726695 MsG0480018917.01.T01:intron 40.0%
CCATCACCAAAAACATAGAG+GGG - Chr4:11725128-11725147 None:intergenic 40.0%
CCCAGAAAGAAAAACGCAAT+TGG - Chr4:11724701-11724720 None:intergenic 40.0%
CTCTACTAATGTATCGAGCA+GGG + Chr4:11728061-11728080 MsG0480018917.01.T01:intron 40.0%
CTCTATTGTATTCCGATGAC+AGG - Chr4:11725424-11725443 None:intergenic 40.0%
CTTCAAGGAAACTATCTGGA+CGG - Chr4:11728108-11728127 None:intergenic 40.0%
GAGAACGGTTAAGAAAGGAA+AGG - Chr4:11724425-11724444 None:intergenic 40.0%
GAGACAGCAATTTCTTACCA+AGG - Chr4:11726603-11726622 None:intergenic 40.0%
GAGGATTCAATAACCACCAT+AGG + Chr4:11726905-11726924 MsG0480018917.01.T01:intron 40.0%
GCAATTTCTTACCAAGGCAA+AGG - Chr4:11726597-11726616 None:intergenic 40.0%
GCTGCAATTCATTACCATAC+AGG - Chr4:11727844-11727863 None:intergenic 40.0%
GGGGCTTAATAATAGTCGAA+AGG - Chr4:11724572-11724591 None:intergenic 40.0%
TATGCAGTACATACATGGTG+TGG + Chr4:11726342-11726361 MsG0480018917.01.T01:CDS 40.0%
TCAAGCTTCTTGCAGAGAAT+TGG + Chr4:11725063-11725082 MsG0480018917.01.T01:CDS 40.0%
TCTAATCTTGATGCTTTGGC+AGG + Chr4:11726514-11726533 MsG0480018917.01.T01:intron 40.0%
TGCAATTGCAATGTTGTGAC+TGG - Chr4:11724460-11724479 None:intergenic 40.0%
TGCGATCATGTCAAGTATCA+GGG + Chr4:11725654-11725673 MsG0480018917.01.T01:intron 40.0%
TGTTGGATTCTTCCTTCTTC+CGG + Chr4:11726414-11726433 MsG0480018917.01.T01:CDS 40.0%
TTCAAGGAAACTATCTGGAC+GGG - Chr4:11728107-11728126 None:intergenic 40.0%
TTGAGATCTCTCATTCTCAC+AGG + Chr4:11727080-11727099 MsG0480018917.01.T01:intron 40.0%
TTGGGTATCCGAATCTGAAT+CGG - Chr4:11724682-11724701 None:intergenic 40.0%
TTGGGTTTGAATCCTGTCAT+CGG + Chr4:11725409-11725428 MsG0480018917.01.T01:intron 40.0%
TTTGGTGGAAGAGAGAGAAA+GGG + Chr4:11727209-11727228 MsG0480018917.01.T01:intron 40.0%
! CATGTTGTTGTTGTGTGTTC+TGG + Chr4:11726744-11726763 MsG0480018917.01.T01:intron 40.0%
! CCCAATTGCGTTTTTCTTTC+TGG + Chr4:11724697-11724716 MsG0480018917.01.T01:five_prime_UTR 40.0%
! GTAATCACATCTTTCGGTGT+CGG - Chr4:11726179-11726198 None:intergenic 40.0%
! GTCTTTTTACATTGGTCGTG+AGG + Chr4:11724880-11724899 MsG0480018917.01.T01:CDS 40.0%
! TGATATTATCGCATCGACAC+TGG - Chr4:11726232-11726251 None:intergenic 40.0%
!! ATCAGGGTTGGTTTATTGGT+TGG + Chr4:11725670-11725689 MsG0480018917.01.T01:intron 40.0%
!!! CAAAGGTCGAATACCGATTT+TGG + Chr4:11727346-11727365 MsG0480018917.01.T01:intron 40.0%
ACATCTTGAAGAATAGGGCC+AGG - Chr4:11726397-11726416 None:intergenic 45.0%
ACATTGGGTGTGTAGAATGG+AGG - Chr4:11727183-11727202 None:intergenic 45.0%
ACCAGATCCATAAAGCAGCT+CGG + Chr4:11728497-11728516 MsG0480018917.01.T01:intron 45.0%
CAAATCATACCTCACGGCAA+TGG - Chr4:11727970-11727989 None:intergenic 45.0%
CATCCATATAACACGCCATG+CGG - Chr4:11728228-11728247 None:intergenic 45.0%
CATGGCGTGTTATATGGATG+CGG + Chr4:11728228-11728247 MsG0480018917.01.T01:CDS 45.0%
CATTGGGTGTGTAGAATGGA+GGG - Chr4:11727182-11727201 None:intergenic 45.0%
GACCGTATCCAAAAAACGCT+TGG + Chr4:11725361-11725380 MsG0480018917.01.T01:intron 45.0%
GCCCATCTATAGAGACAGAT+GGG + Chr4:11726708-11726727 MsG0480018917.01.T01:intron 45.0%
GCCCATCTGTCTCTATAGAT+GGG - Chr4:11726712-11726731 None:intergenic 45.0%
GGCCCTATTCTTCAAGATGT+TGG + Chr4:11726397-11726416 MsG0480018917.01.T01:CDS 45.0%
GGGGTGGTATGGGAAAAAAA+GGG + Chr4:11727275-11727294 MsG0480018917.01.T01:intron 45.0%
GTGCGATCATGTCAAGTATC+AGG + Chr4:11725653-11725672 MsG0480018917.01.T01:intron 45.0%
TCAAGGAAACTATCTGGACG+GGG - Chr4:11728106-11728125 None:intergenic 45.0%
TCCACCAAACATGCGACATT+GGG - Chr4:11727198-11727217 None:intergenic 45.0%
TGCCCATCTATAGAGACAGA+TGG + Chr4:11726707-11726726 MsG0480018917.01.T01:intron 45.0%
TGCCCATCTGTCTCTATAGA+TGG - Chr4:11726713-11726732 None:intergenic 45.0%
TGGGGTGGTATGGGAAAAAA+AGG + Chr4:11727274-11727293 MsG0480018917.01.T01:intron 45.0%
TGTTGTGACTGGTATGAACG+TGG - Chr4:11724449-11724468 None:intergenic 45.0%
TTCCACCAAACATGCGACAT+TGG - Chr4:11727199-11727218 None:intergenic 45.0%
TTGATGCTTTGGCAGGAACT+CGG + Chr4:11726521-11726540 MsG0480018917.01.T01:intron 45.0%
! ATGCCAAATATGTGATGGCG+AGG - Chr4:11728436-11728455 None:intergenic 45.0%
! GTTTGGTGGAAGAGAGAGAA+AGG + Chr4:11727208-11727227 MsG0480018917.01.T01:intron 45.0%
! TGCCAAATATGTGATGGCGA+GGG - Chr4:11728435-11728454 None:intergenic 45.0%
!! GCCGTGAGGTATGATTTGTT+TGG + Chr4:11727972-11727991 MsG0480018917.01.T01:intron 45.0%
!! TCTAGCTGGTCTTGTTTGTC+AGG + Chr4:11725094-11725113 MsG0480018917.01.T01:CDS 45.0%
!!! CCCCTCTATGTTTTTGGTGA+TGG + Chr4:11725125-11725144 MsG0480018917.01.T01:intron 45.0%
!!! ATTTTTTTTTTTTTTTTTTG+AGG - Chr4:11724642-11724661 None:intergenic 5.0%
AAATGCCACATGGGGTGGTA+TGG + Chr4:11727264-11727283 MsG0480018917.01.T01:intron 50.0%
AATGCCACATGGGGTGGTAT+GGG + Chr4:11727265-11727284 MsG0480018917.01.T01:intron 50.0%
AATGGAGGGTTTGCCACATG+GGG - Chr4:11727168-11727187 None:intergenic 50.0%
ACCCAATGTCGCATGTTTGG+TGG + Chr4:11727194-11727213 MsG0480018917.01.T01:intron 50.0%
ACCTCACGGCAATGGTAGTT+TGG - Chr4:11727962-11727981 None:intergenic 50.0%
ACTGACACAAACACGGACAC+CGG - Chr4:11726264-11726283 None:intergenic 50.0%
AGAATGGAGGGTTTGCCACA+TGG - Chr4:11727170-11727189 None:intergenic 50.0%
CACACCCAATGTCGCATGTT+TGG + Chr4:11727191-11727210 MsG0480018917.01.T01:intron 50.0%
CATTGGTCGTGAGGCTTCAA+AGG + Chr4:11724889-11724908 MsG0480018917.01.T01:CDS 50.0%
CCAGATCCATAAAGCAGCTC+GGG + Chr4:11728498-11728517 MsG0480018917.01.T01:intron 50.0%
CTGAGACTAATCCCTCAAGC+CGG - Chr4:11725490-11725509 None:intergenic 50.0%
GAATGGAGGGTTTGCCACAT+GGG - Chr4:11727169-11727188 None:intergenic 50.0%
GATACATTGACCACCCCATG+TGG + Chr4:11727152-11727171 MsG0480018917.01.T01:intron 50.0%
GATCCTCTTAAGAGACCCCA+AGG - Chr4:11725869-11725888 None:intergenic 50.0%
GCGACATTGGGTGTGTAGAA+TGG - Chr4:11727186-11727205 None:intergenic 50.0%
GTGGCGAGAACGGTTAAGAA+AGG - Chr4:11724430-11724449 None:intergenic 50.0%
GTTCCGCATGGCGTGTTATA+TGG + Chr4:11728222-11728241 MsG0480018917.01.T01:intron 50.0%
TCCAAACTACCATTGCCGTG+AGG + Chr4:11727958-11727977 MsG0480018917.01.T01:CDS 50.0%
TGAGACTAATCCCTCAAGCC+GGG - Chr4:11725489-11725508 None:intergenic 50.0%
TGCCCTCGCCATCACATATT+TGG + Chr4:11728430-11728449 MsG0480018917.01.T01:intron 50.0%
TGGTATGAACGTGGCGAGAA+CGG - Chr4:11724440-11724459 None:intergenic 50.0%
! GAGGGAGAATTTTGCCACCT+AGG + Chr4:11725455-11725474 MsG0480018917.01.T01:intron 50.0%
! GGAGAATTTTGCCACCTAGG+TGG + Chr4:11725458-11725477 MsG0480018917.01.T01:intron 50.0%
! TTTTCCCATACCACCCCATG+TGG - Chr4:11727272-11727291 None:intergenic 50.0%
ACTATCTGGACGGGGCAATG+TGG - Chr4:11728098-11728117 None:intergenic 55.0%
CGGCAATGGTAGTTTGGACC+AGG - Chr4:11727956-11727975 None:intergenic 55.0%
GATCCATAAAGCAGCTCGGG+TGG + Chr4:11728501-11728520 MsG0480018917.01.T01:intron 55.0%
GGACCTTGGGGTCTCTTAAG+AGG + Chr4:11725863-11725882 MsG0480018917.01.T01:intron 55.0%
! CCCGAGCTGCTTTATGGATC+TGG - Chr4:11728501-11728520 None:intergenic 55.0%
! TAGCCACCCGAGCTGCTTTA+TGG - Chr4:11728507-11728526 None:intergenic 55.0%
ACAGGGGCCTATCGAGTGAG+AGG + Chr4:11726861-11726880 MsG0480018917.01.T01:intron 60.0%
CAAGCCGGGTAGAACCACCT+AGG - Chr4:11725475-11725494 None:intergenic 60.0%
CGGTTGACGTAGTTGTCGCC+TGG + Chr4:11728576-11728595 MsG0480018917.01.T01:CDS 60.0%
GCGCGAGCGAGGGAAGATAA+AGG - Chr4:11726987-11727006 None:intergenic 60.0%
TCGTAGTTGTGCGCGAGCGA+GGG - Chr4:11726997-11727016 None:intergenic 60.0%
! AGGTGGTTCTACCCGGCTTG+AGG + Chr4:11725475-11725494 MsG0480018917.01.T01:intron 60.0%
! GCCACCTAGGTGGTTCTACC+CGG + Chr4:11725468-11725487 MsG0480018917.01.T01:intron 60.0%
! GGTGGTTCTACCCGGCTTGA+GGG + Chr4:11725476-11725495 MsG0480018917.01.T01:intron 60.0%
CTCGTAGTTGTGCGCGAGCG+AGG - Chr4:11726998-11727017 None:intergenic 65.0%
GCCGGGTAGAACCACCTAGG+TGG - Chr4:11725472-11725491 None:intergenic 65.0%
GGAGGGTTTGCCACATGGGG+TGG - Chr4:11727165-11727184 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 11724393 11728601 11724393 ID=MsG0480018917.01;Name=MsG0480018917.01
Chr4 mRNA 11724393 11728601 11724393 ID=MsG0480018917.01.T01;Parent=MsG0480018917.01;Name=MsG0480018917.01.T01;_AED=0.49;_eAED=0.50;_QI=434|0.57|0.5|1|0.57|0.5|8|0|251
Chr4 exon 11724393 11724913 11724393 ID=MsG0480018917.01.T01:exon:7337;Parent=MsG0480018917.01.T01
Chr4 exon 11725026 11725115 11725026 ID=MsG0480018917.01.T01:exon:7338;Parent=MsG0480018917.01.T01
Chr4 exon 11726307 11726435 11726307 ID=MsG0480018917.01.T01:exon:7339;Parent=MsG0480018917.01.T01
Chr4 exon 11726536 11726604 11726536 ID=MsG0480018917.01.T01:exon:7340;Parent=MsG0480018917.01.T01
Chr4 exon 11727863 11727979 11727863 ID=MsG0480018917.01.T01:exon:7341;Parent=MsG0480018917.01.T01
Chr4 exon 11728082 11728142 11728082 ID=MsG0480018917.01.T01:exon:7342;Parent=MsG0480018917.01.T01
Chr4 exon 11728223 11728325 11728223 ID=MsG0480018917.01.T01:exon:7343;Parent=MsG0480018917.01.T01
Chr4 exon 11728502 11728601 11728502 ID=MsG0480018917.01.T01:exon:7344;Parent=MsG0480018917.01.T01
Chr4 five_prime_UTR 11724393 11724826 11724393 ID=MsG0480018917.01.T01:five_prime_utr;Parent=MsG0480018917.01.T01
Chr4 CDS 11724827 11724913 11724827 ID=MsG0480018917.01.T01:cds;Parent=MsG0480018917.01.T01
Chr4 CDS 11725026 11725115 11725026 ID=MsG0480018917.01.T01:cds;Parent=MsG0480018917.01.T01
Chr4 CDS 11726307 11726435 11726307 ID=MsG0480018917.01.T01:cds;Parent=MsG0480018917.01.T01
Chr4 CDS 11726536 11726604 11726536 ID=MsG0480018917.01.T01:cds;Parent=MsG0480018917.01.T01
Chr4 CDS 11727863 11727979 11727863 ID=MsG0480018917.01.T01:cds;Parent=MsG0480018917.01.T01
Chr4 CDS 11728082 11728142 11728082 ID=MsG0480018917.01.T01:cds;Parent=MsG0480018917.01.T01
Chr4 CDS 11728223 11728325 11728223 ID=MsG0480018917.01.T01:cds;Parent=MsG0480018917.01.T01
Chr4 CDS 11728502 11728601 11728502 ID=MsG0480018917.01.T01:cds;Parent=MsG0480018917.01.T01
Gene Sequence

>MsG0480018917.01.T01

ATGGAACTGTTCATAACACAACAAAACAAACATCACAACAACAACAATAACATGTCTTTTTACATTGGTCGTGAGGCTTCAAAGGTTTTATGGAAGAGAATTTGCTCAGAGATAAGTATTGAGATCAAGCTTCTTGCAGAGAATTGGAAGTATCTTCTAGCTGGTCTTGTTTGTCAGTTTAACACTCGATATCTAAATCTAAACGGTTTCCATATGCAGTACATACATGGTGTGGCAGCCCGAAGTGTTCATTATTTTCATAAGCCTGGCCCTATTCTTCAAGATGTTGGATTCTTCCTTCTTCCGGAACTCGGACAAGACAAAGCTTACATCAGTGAAACACTGTTCACTTCTATCTTTATATCCTTTGCCTTGCATATTTCTTATTACATATGGCAATTGTGTGTATGTTCACTGCAGGCTTCTCAAATTCTTCGCATAATCACATTTTATTCTACACAACTACCTGGTCCAAACTACCATTGCCGTGAGGGTTCTAAACTTGCCACATTGCCCCGTCCAGATAGTTTCCTTGAAGTTTTCGTGATTAACTTTCCGCATGGCGTGTTATATGGATGCGGTGATTTAATATTTTCGTCACACATGATCTTTACTCTTACTTTCGTACGTACATATCAGAAATATGGCACTCGAAGATCCATAAAGCAGCTCGGGTGGCTACTTGCCGTGATTCAGAGTCTTTTGATTGTAGCATCTCGCAAACATTACACGGTTGACGTAGTTGTCGCCTGGTAA
Protein sequence

>MsG0480018917.01.T01

MELFITQQNKHHNNNNNMSFYIGREASKVLWKRICSEISIEIKLLAENWKYLLAGLVCQFNTRYLNLNGFHMQYIHGVAARSVHYFHKPGPILQDVGFFLLPELGQDKAYISETLFTSIFISFALHISYYIWQLCVCSLQASQILRIITFYSTQLPGPNYHCREGSKLATLPRPDSFLEVFVINFPHGVLYGCGDLIFSSHMIFTLTFVRTYQKYGTRRSIKQLGWLLAVIQSLLIVASRKHYTVDVVVAW*