AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021822.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021822.01.T01 MTR_4g076990 83.871 403 29 5 27 393 82 484 0.0 676
MsG0480021822.01.T01 MTR_3g088575 34.948 289 144 6 138 387 562 845 1.40e-45 169
MsG0480021822.01.T01 MTR_1g029620 35.862 290 140 8 138 387 686 969 2.07e-42 160
MsG0480021822.01.T01 MTR_3g088575 36.681 229 118 5 138 344 657 880 8.31e-36 140
MsG0480021822.01.T01 MTR_1g029620 36.752 234 119 6 138 348 686 913 8.04e-35 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021822.01.T01 AT3G21070 60.432 417 123 7 14 393 77 488 1.23e-166 478
MsG0480021822.01.T01 AT3G21070 59.338 423 124 6 14 393 26 443 2.44e-165 473
MsG0480021822.01.T01 AT3G21070 60.432 417 123 7 14 393 155 566 3.90e-165 477
MsG0480021822.01.T01 AT3G21070 54.183 251 90 5 14 244 155 400 3.57e-80 253
MsG0480021822.01.T01 AT1G21640 34.177 316 156 9 125 393 643 953 9.84e-44 164
MsG0480021822.01.T01 AT1G21640 33.435 329 155 10 125 393 643 967 4.88e-43 162

Find 124 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCTTACCTCACAAATT+TGG 0.209583 4:+64777171 MsG0480021822.01.T01:CDS
TACCAGAGCATGTGACTTTA+CGG 0.290314 4:+64777753 MsG0480021822.01.T01:CDS
GAGAGGAGAGAATAGGGAAT+AGG 0.322323 4:-64771780 None:intergenic
AGAGGAGAGAATAGGGAATA+GGG 0.324477 4:-64771779 None:intergenic
CATATTGACCAAACCAAATT+CGG 0.325935 4:+64775095 MsG0480021822.01.T01:CDS
TTTATATAATGTGGTTTGTT+TGG 0.329273 4:-64774187 None:intergenic
CTCCTCTCTTCTTCATTCCA+TGG 0.331204 4:+64771795 MsG0480021822.01.T01:exon
GAGCATCTTGGAATCAGAAT+TGG 0.335509 4:-64774289 None:intergenic
TTTATTCCAGATCTTTGAAA+TGG 0.342580 4:+64775050 MsG0480021822.01.T01:intron
GAAGAAGAGAGGAGAGAATA+GGG 0.343754 4:-64771786 None:intergenic
CGGTAGTACTGCATATTCTT+TGG 0.345938 4:+64777261 MsG0480021822.01.T01:CDS
GTGCCGTAATGTAATACTAA+TGG 0.366497 4:-64777050 None:intergenic
AGCATCTTGGAATCAGAATT+GGG 0.369523 4:-64774288 None:intergenic
ACGTGTCCAGGTCGATCTTC+TGG 0.371257 4:+64775568 MsG0480021822.01.T01:CDS
TGCCGTAATGTAATACTAAT+GGG 0.375757 4:-64777049 None:intergenic
AACTGAATCCGAATTTGGTT+TGG 0.384384 4:-64775103 None:intergenic
AGAACGTAAGAGAGAGTAGT+AGG 0.395392 4:+64771670 MsG0480021822.01.T01:five_prime_UTR
TTTGTTCCCATGACGTCCTT+AGG 0.405594 4:+64774256 MsG0480021822.01.T01:CDS
CCTAAAGAAAAGGGGACAAT+AGG 0.406636 4:-64776861 None:intergenic
TGAAGAAGAGAGGAGAGAAT+AGG 0.414261 4:-64771787 None:intergenic
GCATTCATGAGGGTCTTCAT+TGG 0.415841 4:+64777931 MsG0480021822.01.T01:CDS
TCCAAGAGACCCTAAAGAAA+AGG 0.423735 4:-64776871 None:intergenic
AAATACCTTTCTGAGCATCT+TGG 0.428311 4:-64774301 None:intergenic
AAAATCATGCCTTGAGCATC+GGG 0.428344 4:+64774131 MsG0480021822.01.T01:CDS
AGAATGGTTTGGTATTTAGT+TGG 0.431565 4:+64771735 MsG0480021822.01.T01:five_prime_UTR
CCAAGAGACCCTAAAGAAAA+GGG 0.433750 4:-64776870 None:intergenic
TATATAAAGTTGAAGCTAAC+GGG 0.441430 4:+64774202 MsG0480021822.01.T01:CDS
AGAGAATAGGGAATAGGGAA+TGG 0.443889 4:-64771774 None:intergenic
TCTGCATGGGCGTCATTTGA+TGG 0.444185 4:+64777802 MsG0480021822.01.T01:CDS
ATATAATGTGGTTTGTTTGG+CGG 0.445641 4:-64774184 None:intergenic
CTCATATTTACGTTTCCATT+CGG 0.448735 4:-64773453 None:intergenic
TTTGGCAGCTGGAGGATCAA+TGG 0.451281 4:+64777279 MsG0480021822.01.T01:CDS
CCATGACAAGCCGTAGGAAC+AGG 0.452096 4:-64777882 None:intergenic
CACCGTAAAGTCACATGCTC+TGG 0.457654 4:-64777755 None:intergenic
GAGAATAGGGAATAGGGAAT+GGG 0.458573 4:-64771773 None:intergenic
GGCCCTTTAAAATTGATTCA+AGG 0.464517 4:-64777027 None:intergenic
GCCCCATTAGTATTACATTA+CGG 0.471359 4:+64777047 MsG0480021822.01.T01:CDS
GAAAATCATGCCTTGAGCAT+CGG 0.477900 4:+64774130 MsG0480021822.01.T01:CDS
GGCACCCTGGCCTGTTCCTA+CGG 0.479828 4:+64777872 MsG0480021822.01.T01:CDS
AGCTTCAACTTTATATAATG+TGG 0.480008 4:-64774196 None:intergenic
TTATTCCAGATCTTTGAAAT+GGG 0.480922 4:+64775051 MsG0480021822.01.T01:intron
ACCTCGTTTAGAACAAGTAT+AGG 0.482010 4:-64777130 None:intergenic
ACTGCATATTCTTTGGCAGC+TGG 0.485522 4:+64777268 MsG0480021822.01.T01:CDS
GTCACACGTGTGCAAGGGGA+TGG 0.499730 4:+64777217 MsG0480021822.01.T01:CDS
AATTGGGGTTTCCATTCCTA+AGG 0.501829 4:-64774272 None:intergenic
TCCTTTGTCACACGTGTGCA+AGG 0.504294 4:+64777211 MsG0480021822.01.T01:CDS
ATATGTGGAACCACGTGTCC+AGG 0.505262 4:+64775556 MsG0480021822.01.T01:CDS
TTCTGTGTGCTGAAATGATT+AGG 0.505327 4:+64775130 MsG0480021822.01.T01:CDS
GTCAATATGAGCACCGTCTG+TGG 0.508326 4:-64775081 None:intergenic
TCCCATGACGTCCTTAGGAA+TGG 0.510150 4:+64774261 MsG0480021822.01.T01:CDS
CTCAAGCTGAGGCTGCCGAA+TGG 0.510339 4:+64773438 MsG0480021822.01.T01:CDS
CGTCATTTGATGGCAAAGAC+AGG 0.513709 4:+64777812 MsG0480021822.01.T01:CDS
TCAATATGAGCACCGTCTGT+GGG 0.514498 4:-64775080 None:intergenic
AGCAGAGCGCAGTAGTAAGC+AGG 0.517230 4:+64774870 MsG0480021822.01.T01:CDS
ATGGAAACGTAAATATGAGT+TGG 0.518720 4:+64773457 MsG0480021822.01.T01:CDS
AATATGAGTTGGAGCGGACA+CGG 0.519631 4:+64773468 MsG0480021822.01.T01:CDS
AGGATCAATGGTCCATCCTC+AGG 0.522080 4:+64777291 MsG0480021822.01.T01:CDS
TAAGAAACTACAAGTATATG+TGG 0.523520 4:+64775541 MsG0480021822.01.T01:CDS
GCAGATCCTCTGCTATTGAA+TGG 0.526265 4:-64777784 None:intergenic
AAACTTCAATGGTGCTGCAA+AGG 0.526729 4:+64774787 MsG0480021822.01.T01:CDS
TCCCTCCCACACAGAAAGAA+TGG 0.527413 4:+64771719 MsG0480021822.01.T01:five_prime_UTR
AAGGGGACAATAGGAGGCAC+TGG 0.531100 4:-64776852 None:intergenic
TTCCATTCCTAAGGACGTCA+TGG 0.534502 4:-64774263 None:intergenic
CCCACACAGAAAGAATGGTT+TGG 0.536976 4:+64771724 MsG0480021822.01.T01:five_prime_UTR
ACAAGCCGTAGGAACAGGCC+AGG 0.537381 4:-64777877 None:intergenic
CCTGTTCCTACGGCTTGTCA+TGG 0.541901 4:+64777882 MsG0480021822.01.T01:CDS
GCTGCAAACAATGCATCTCC+TGG 0.544470 4:-64777847 None:intergenic
ATTCTTTCTGTGTGGGAGGG+AGG 0.545795 4:-64771717 None:intergenic
AACCATTCTTTCTGTGTGGG+AGG 0.547238 4:-64771721 None:intergenic
AGTCTGAAGAATGTTATTCA+AGG 0.548385 4:+64774226 MsG0480021822.01.T01:CDS
GAAGAATGTTATTCAAGGAA+TGG 0.548576 4:+64774231 MsG0480021822.01.T01:CDS
CCAAACCATTCTTTCTGTGT+GGG 0.552663 4:-64771724 None:intergenic
ACCATTCTTTCTGTGTGGGA+GGG 0.554301 4:-64771720 None:intergenic
TTGTTTGCAGCATGGCACCC+TGG 0.555316 4:+64777859 MsG0480021822.01.T01:CDS
TTATCATTCTCAGATGGTTG+AGG 0.555430 4:+64775513 MsG0480021822.01.T01:intron
TCCATTCCTAAGGACGTCAT+GGG 0.556880 4:-64774262 None:intergenic
GAGATGCATTGTTTGCAGCA+TGG 0.559416 4:+64777851 MsG0480021822.01.T01:CDS
AAAGAAAAGGGGACAATAGG+AGG 0.560184 4:-64776858 None:intergenic
ACTTTAACTTTGTAGAAACA+TGG 0.561034 4:+64775603 MsG0480021822.01.T01:CDS
CAAGATCAGCCCGATGCTCA+AGG 0.561911 4:-64774140 None:intergenic
TTCAAGAAAGTACCTGAGGA+TGG 0.571238 4:-64777303 None:intergenic
CCTTTGTCACACGTGTGCAA+GGG 0.572743 4:+64777212 MsG0480021822.01.T01:CDS
ACCAAACCATTCTTTCTGTG+TGG 0.573323 4:-64771725 None:intergenic
CAAAGAATATGCAGTACTAC+CGG 0.575395 4:-64777260 None:intergenic
GCATATTCTTTGGCAGCTGG+AGG 0.576402 4:+64777271 MsG0480021822.01.T01:CDS
CCCTTGCACACGTGTGACAA+AGG 0.578224 4:-64777212 None:intergenic
GTATAACATGACATATCAAA+CGG 0.579333 4:-64777072 None:intergenic
TTATATAAAGTTGAAGCTAA+CGG 0.582757 4:+64774201 MsG0480021822.01.T01:CDS
TGATTCCAAGATGCTCAGAA+AGG 0.584205 4:+64774296 MsG0480021822.01.T01:CDS
CTTCTTGCACAGCATTCATG+AGG 0.584282 4:+64777920 MsG0480021822.01.T01:CDS
CTTTGTCACACGTGTGCAAG+GGG 0.585437 4:+64777213 MsG0480021822.01.T01:CDS
GACAGGAAACAGTTAGCACC+AGG 0.587740 4:+64777829 MsG0480021822.01.T01:CDS
TTTGTAGAAACATGGAGTGA+TGG 0.596829 4:+64775611 MsG0480021822.01.T01:CDS
AAAAGCTGCTGCTCAAGCTG+AGG 0.596980 4:+64773427 MsG0480021822.01.T01:CDS
ACTCCTCCAGAAGATCGACC+TGG 0.600736 4:-64775574 None:intergenic
TGCCATGGAATGAAGAAGAG+AGG 0.604358 4:-64771797 None:intergenic
CAGACAGCAACTATGTTCAA+AGG 0.607190 4:+64776828 MsG0480021822.01.T01:intron
GACCCTTAGGAAGTTGCTGA+AGG 0.611782 4:+64773404 MsG0480021822.01.T01:intron
CTTACTACTGCGCTCTGCTG+TGG 0.613186 4:-64774866 None:intergenic
CAAATACCATTCAATAGCAG+AGG 0.614625 4:+64777778 MsG0480021822.01.T01:CDS
AGTAGGAGTAGTATATTGCA+AGG 0.618305 4:+64771687 MsG0480021822.01.T01:five_prime_UTR
AACGTAAATATGAGTTGGAG+CGG 0.620635 4:+64773462 MsG0480021822.01.T01:CDS
CAAGCCGTAGGAACAGGCCA+GGG 0.621041 4:-64777876 None:intergenic
TCAATAGCAGAGGATCTGCA+TGG 0.622946 4:+64777788 MsG0480021822.01.T01:CDS
GTGGGAGAATTGAGCTTGTG+AGG 0.625456 4:-64771823 None:intergenic
TTCTTGCACAGCATTCATGA+GGG 0.628470 4:+64777921 MsG0480021822.01.T01:CDS
GCATCTTGGAATCAGAATTG+GGG 0.632152 4:-64774287 None:intergenic
CAATAGCAGAGGATCTGCAT+GGG 0.633440 4:+64777789 MsG0480021822.01.T01:CDS
AGTAACATTCCAAATTTGTG+AGG 0.633691 4:-64777180 None:intergenic
GAGCTTGTGAGGAGGTGCCA+TGG 0.634948 4:-64771812 None:intergenic
TCACAAGCTCAATTCTCCCA+CGG 0.637477 4:+64771825 MsG0480021822.01.T01:CDS
ACATGCTCTGGTAATATCAG+TGG 0.641766 4:-64777743 None:intergenic
TTCTCACAAGACAAAGACAA+AGG 0.644586 4:-64771633 None:intergenic
ACCTATACTTGTTCTAAACG+AGG 0.647098 4:+64777129 MsG0480021822.01.T01:CDS
TGTCCAGGTCGATCTTCTGG+AGG 0.648734 4:+64775571 MsG0480021822.01.T01:CDS
AACGAGGTTACTATTGATCG+TGG 0.656515 4:+64777145 MsG0480021822.01.T01:CDS
AATGGGAGTCACCCCACAGA+CGG 0.659888 4:+64775068 MsG0480021822.01.T01:CDS
GAATCTCCATGACAAGCCGT+AGG 0.661516 4:-64777888 None:intergenic
GCCGTAATGTAATACTAATG+GGG 0.664160 4:-64777048 None:intergenic
AGAAGATCGACCTGGACACG+TGG 0.664253 4:-64775566 None:intergenic
CAAGAGACCCTAAAGAAAAG+GGG 0.665932 4:-64776869 None:intergenic
CAATATGAGCACCGTCTGTG+GGG 0.720807 4:-64775079 None:intergenic
GGAGAATTGAGCTTGTGAGG+AGG 0.732507 4:-64771820 None:intergenic
AATCTGCAGATCGAAAACAA+AGG 0.765104 4:+64773491 MsG0480021822.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATCATAAAATTAAAAA+AGG - Chr4:64776634-64776653 None:intergenic 10.0%
!! AATTACTATATAATATGTAT+CGG - Chr4:64774580-64774599 None:intergenic 10.0%
!!! ATTTTTCAAAATTGAAATAA+TGG + Chr4:64772165-64772184 MsG0480021822.01.T01:intron 10.0%
!!! TTTTTCAAAATTGAAATAAT+GGG + Chr4:64772166-64772185 MsG0480021822.01.T01:intron 10.0%
!!! TTTTTTAATTACAACAAAAT+GGG + Chr4:64772015-64772034 MsG0480021822.01.T01:intron 10.0%
!!! TTTTTTTAATTACAACAAAA+TGG + Chr4:64772014-64772033 MsG0480021822.01.T01:intron 10.0%
!! AAAAATGCATTAAATTAGTA+GGG - Chr4:64772569-64772588 None:intergenic 15.0%
!! AAAACAAAACAAAAAAATCA+AGG + Chr4:64772426-64772445 MsG0480021822.01.T01:intron 15.0%
!! AAATGATTGAAATGAATAAA+CGG - Chr4:64773693-64773712 None:intergenic 15.0%
!! ATATGTTAGTATTAGTTATT+AGG + Chr4:64773064-64773083 MsG0480021822.01.T01:intron 15.0%
!! ATTAAAGATAAATTGCTTAT+AGG + Chr4:64773755-64773774 MsG0480021822.01.T01:intron 15.0%
!! TAAAAATGCATTAAATTAGT+AGG - Chr4:64772570-64772589 None:intergenic 15.0%
!!! AAATTTTGCAATAATTTTTG+CGG + Chr4:64772796-64772815 MsG0480021822.01.T01:intron 15.0%
!!! CAATTTTGAAAAATTGAATT+TGG - Chr4:64772159-64772178 None:intergenic 15.0%
!!! TAATTTTGTCATCTAAAATA+TGG + Chr4:64776138-64776157 MsG0480021822.01.T01:intron 15.0%
!!! TAGAAGAAAAAAGATTTTAA+CGG - Chr4:64773897-64773916 None:intergenic 15.0%
!!! TTTTAAAATATCCTATTGAA+TGG + Chr4:64776086-64776105 MsG0480021822.01.T01:intron 15.0%
!!! TTTTACATAAGATTTTAACA+TGG + Chr4:64777542-64777561 MsG0480021822.01.T01:intron 15.0%
!! AAAAAAATACCAATTAACCA+AGG - Chr4:64775493-64775512 None:intergenic 20.0%
!! AAAAAATACCAATTAACCAA+GGG - Chr4:64775492-64775511 None:intergenic 20.0%
!! AAATATGTATATGCATGATT+CGG - Chr4:64776413-64776432 None:intergenic 20.0%
!! AAGCAATTTATCTTTAATAC+AGG - Chr4:64773753-64773772 None:intergenic 20.0%
!! AATTAAAAAGAAAAATCGAC+CGG - Chr4:64773666-64773685 None:intergenic 20.0%
!! AGTTAAGATAGTAAAAAATC+TGG + Chr4:64772763-64772782 MsG0480021822.01.T01:intron 20.0%
!! ATATCACAAAGCAATATATT+AGG - Chr4:64776778-64776797 None:intergenic 20.0%
!! ATATCTGTTTACATTTCTAT+TGG + Chr4:64776958-64776977 MsG0480021822.01.T01:intron 20.0%
!! GTAAAAAAAATATACGTCTA+AGG - Chr4:64777528-64777547 None:intergenic 20.0%
!! TCAAAATATATATCTGTCTT+TGG + Chr4:64776684-64776703 MsG0480021822.01.T01:intron 20.0%
!! TCAAATATTGATGTCATAAA+AGG + Chr4:64775641-64775660 MsG0480021822.01.T01:intron 20.0%
!! TGAAAAAACAAAATAGTGAA+TGG + Chr4:64775828-64775847 MsG0480021822.01.T01:intron 20.0%
!! TTATATAAAGTTGAAGCTAA+CGG + Chr4:64774201-64774220 MsG0480021822.01.T01:CDS 20.0%
!! TTGAAAAATTCAACAGAAAA+AGG - Chr4:64773963-64773982 None:intergenic 20.0%
!! TTTATACTAAGACAAATACT+TGG - Chr4:64775416-64775435 None:intergenic 20.0%
!!! AAATATTTAAGAGTACCAAT+AGG - Chr4:64774387-64774406 None:intergenic 20.0%
!!! AATATTTAAGAGTACCAATA+GGG - Chr4:64774386-64774405 None:intergenic 20.0%
!!! ATTAAACAAATTTGTTGAGT+AGG + Chr4:64772885-64772904 MsG0480021822.01.T01:intron 20.0%
!!! CTCAACAAATTTGTTTAATT+TGG - Chr4:64772884-64772903 None:intergenic 20.0%
!!! GAAGTAACATTTTTAATGTT+GGG + Chr4:64776601-64776620 MsG0480021822.01.T01:intron 20.0%
!!! TTAAACAAATTTGTTGAGTA+GGG + Chr4:64772886-64772905 MsG0480021822.01.T01:intron 20.0%
!!! TTAATTTTATCTACAACATC+CGG + Chr4:64777241-64777260 MsG0480021822.01.T01:CDS 20.0%
!!! TTATACAACTATTTCTGTTA+GGG + Chr4:64771902-64771921 MsG0480021822.01.T01:intron 20.0%
!!! TTTAATTTTATGATGATTGC+TGG + Chr4:64776636-64776655 MsG0480021822.01.T01:intron 20.0%
!!! TTTATATAATGTGGTTTGTT+TGG - Chr4:64774190-64774209 None:intergenic 20.0%
!!! TTTTTTTTATCATTCTCAGA+TGG + Chr4:64775507-64775526 MsG0480021822.01.T01:intron 20.0%
! AAAAAAGAGTTAGTTACTTG+TGG - Chr4:64776230-64776249 None:intergenic 25.0%
! AAAACAATTTCACATACCAT+AGG - Chr4:64776070-64776089 None:intergenic 25.0%
! AAACTGCTATTAAACTTAAG+TGG + Chr4:64772944-64772963 MsG0480021822.01.T01:intron 25.0%
! AAAGGAATAAAACTTGACTT+TGG - Chr4:64775197-64775216 None:intergenic 25.0%
! AAATATAGCTAATTACCATG+AGG - Chr4:64774689-64774708 None:intergenic 25.0%
! AAGCAATATATTAGGATAAC+CGG - Chr4:64776770-64776789 None:intergenic 25.0%
! AATATAGCTAATTACCATGA+GGG - Chr4:64774688-64774707 None:intergenic 25.0%
! AGCTTCAACTTTATATAATG+TGG - Chr4:64774199-64774218 None:intergenic 25.0%
! AGTTAACTATCTGATTATAG+TGG + Chr4:64775938-64775957 MsG0480021822.01.T01:intron 25.0%
! ATGCACATAAACAATTACAA+CGG - Chr4:64775964-64775983 None:intergenic 25.0%
! ATTATGACACTAAAACTGTA+AGG - Chr4:64777604-64777623 None:intergenic 25.0%
! GAAATGTACATAACCTTAAA+AGG + Chr4:64776558-64776577 MsG0480021822.01.T01:intron 25.0%
! GAGTATTCATTGTTAAACTT+TGG + Chr4:64776706-64776725 MsG0480021822.01.T01:intron 25.0%
! GTATAACATGACATATCAAA+CGG - Chr4:64777075-64777094 None:intergenic 25.0%
! TAAGAAACTACAAGTATATG+TGG + Chr4:64775541-64775560 MsG0480021822.01.T01:CDS 25.0%
! TATATAAAGTTGAAGCTAAC+GGG + Chr4:64774202-64774221 MsG0480021822.01.T01:CDS 25.0%
! TCATTATGTTAAAACAGACA+AGG - Chr4:64775876-64775895 None:intergenic 25.0%
! TCTATGCATTGAGATAAATA+TGG + Chr4:64776361-64776380 MsG0480021822.01.T01:intron 25.0%
! TGAGATAAATATGGTAGATT+AGG + Chr4:64776370-64776389 MsG0480021822.01.T01:intron 25.0%
! TTTACTTTACATTACTCAAC+CGG + Chr4:64776748-64776767 MsG0480021822.01.T01:intron 25.0%
!! AAATAATGGAAGATGTGTAA+TGG + Chr4:64775258-64775277 MsG0480021822.01.T01:intron 25.0%
!! ACTTTAACTTTGTAGAAACA+TGG + Chr4:64775603-64775622 MsG0480021822.01.T01:CDS 25.0%
!! AGGTATCTCTTTTATTATTG+AGG + Chr4:64774890-64774909 MsG0480021822.01.T01:intron 25.0%
!! GGAAGTAACATTTTTAATGT+TGG + Chr4:64776600-64776619 MsG0480021822.01.T01:intron 25.0%
!! TAACATATTTTGCTTCGATA+AGG - Chr4:64774335-64774354 None:intergenic 25.0%
!! TATCTCTTTTATTATTGAGG+AGG + Chr4:64774893-64774912 MsG0480021822.01.T01:intron 25.0%
!! TCATATCAAATGTCCTTTTA+AGG - Chr4:64776574-64776593 None:intergenic 25.0%
!! TGCCTTGAATCAATTTTAAA+GGG + Chr4:64777025-64777044 MsG0480021822.01.T01:CDS 25.0%
!! TTGTAATTTTCACTATCTGA+AGG - Chr4:64777001-64777020 None:intergenic 25.0%
!! TTTATTCCAGATCTTTGAAA+TGG + Chr4:64775050-64775069 MsG0480021822.01.T01:intron 25.0%
!!! AGATTTTAACATGGAAATTC+TGG + Chr4:64777551-64777570 MsG0480021822.01.T01:intron 25.0%
!!! ATATATATTTTGACCAGAGA+TGG - Chr4:64776677-64776696 None:intergenic 25.0%
!!! ATTTTAACTGAATCCGAATT+TGG - Chr4:64775111-64775130 None:intergenic 25.0%
!!! CAATTTTTTGCTTGTAGATA+AGG + Chr4:64775984-64776003 MsG0480021822.01.T01:intron 25.0%
!!! CGATTGTTTTTAATGAGATA+AGG - Chr4:64774524-64774543 None:intergenic 25.0%
!!! CTTATACAACTATTTCTGTT+AGG + Chr4:64771901-64771920 MsG0480021822.01.T01:intron 25.0%
!!! GTATCATTACAAGTTTTTTC+TGG + Chr4:64777435-64777454 MsG0480021822.01.T01:intron 25.0%
!!! TTAATCAACTTTGTTTTAGC+AGG - Chr4:64772624-64772643 None:intergenic 25.0%
!!! TTATTCCAGATCTTTGAAAT+GGG + Chr4:64775051-64775070 MsG0480021822.01.T01:intron 25.0%
!!! TTTTTCTAGTGCTATATTTG+TGG + Chr4:64775752-64775771 MsG0480021822.01.T01:intron 25.0%
AAACAATCGAGAGATATAAG+TGG + Chr4:64774535-64774554 MsG0480021822.01.T01:intron 30.0%
AAACACATTAGCAGTTTAGA+TGG - Chr4:64774050-64774069 None:intergenic 30.0%
AAAGGACATTTGATATGAGA+TGG + Chr4:64776576-64776595 MsG0480021822.01.T01:intron 30.0%
AAATACTTGGAAGGATACAA+AGG - Chr4:64775403-64775422 None:intergenic 30.0%
AAATTTAAGAGTGACAAGAG+AGG + Chr4:64776186-64776205 MsG0480021822.01.T01:intron 30.0%
AACAAAAGCTAATAAGCAGT+AGG - Chr4:64772080-64772099 None:intergenic 30.0%
AAGTAAACTTGTAGTAGAGT+TGG - Chr4:64776735-64776754 None:intergenic 30.0%
ACAAAAAAATCAAGGTTCTG+TGG + Chr4:64772434-64772453 MsG0480021822.01.T01:intron 30.0%
ACAAAAGCTAATAAGCAGTA+GGG - Chr4:64772079-64772098 None:intergenic 30.0%
AGAATTAAGAAGAATTACCG+TGG - Chr4:64771845-64771864 None:intergenic 30.0%
AGGAGTTTCAAGACAAAATA+AGG - Chr4:64773366-64773385 None:intergenic 30.0%
AGTAACATTCCAAATTTGTG+AGG - Chr4:64777183-64777202 None:intergenic 30.0%
AGTCTGAAGAATGTTATTCA+AGG + Chr4:64774226-64774245 MsG0480021822.01.T01:CDS 30.0%
AGTTTATAATTTCTACTCCC+TGG + Chr4:64774092-64774111 MsG0480021822.01.T01:intron 30.0%
ATACAATTATGCGAAGTTGA+AGG - Chr4:64776917-64776936 None:intergenic 30.0%
ATCATCTTACCTCACAAATT+TGG + Chr4:64777171-64777190 MsG0480021822.01.T01:CDS 30.0%
ATGCGACAAACATCAATAAA+AGG - Chr4:64774446-64774465 None:intergenic 30.0%
ATGGAAACGTAAATATGAGT+TGG + Chr4:64773457-64773476 MsG0480021822.01.T01:CDS 30.0%
ATTATGTTAATTACCCTGCT+AGG + Chr4:64771942-64771961 MsG0480021822.01.T01:intron 30.0%
ATTCAGAGAACTCTATAAGA+TGG - Chr4:64773247-64773266 None:intergenic 30.0%
CAAAAAAATCAAGGTTCTGT+GGG + Chr4:64772435-64772454 MsG0480021822.01.T01:intron 30.0%
CAGCATCAAAACAAAGTAAA+AGG - Chr4:64775215-64775234 None:intergenic 30.0%
CATATTGACCAAACCAAATT+CGG + Chr4:64775095-64775114 MsG0480021822.01.T01:CDS 30.0%
CTCATATTTACGTTTCCATT+CGG - Chr4:64773456-64773475 None:intergenic 30.0%
CTGAAAACTATTTGATTCCT+GGG + Chr4:64776475-64776494 MsG0480021822.01.T01:intron 30.0%
GAAAATATAAAGATAGCACG+AGG - Chr4:64774987-64775006 None:intergenic 30.0%
GAAGAATGTTATTCAAGGAA+TGG + Chr4:64774231-64774250 MsG0480021822.01.T01:CDS 30.0%
GAATTAAGAAGAATTACCGT+GGG - Chr4:64771844-64771863 None:intergenic 30.0%
GAGTAAACAGTAAACTTTCT+TGG - Chr4:64775854-64775873 None:intergenic 30.0%
TACAAAATCAATCATCGAAG+TGG - Chr4:64773537-64773556 None:intergenic 30.0%
TACTAAGACAAATACTTGGA+AGG - Chr4:64775412-64775431 None:intergenic 30.0%
TAGAGTATATATCGACACAA+GGG - Chr4:64775796-64775815 None:intergenic 30.0%
TAGATGGTAGATCAATATTC+AGG - Chr4:64774034-64774053 None:intergenic 30.0%
TAGGTTACAAGTTTGTATCT+TGG + Chr4:64773083-64773102 MsG0480021822.01.T01:intron 30.0%
TATCGTCTGAAAACGATTTA+TGG + Chr4:64773837-64773856 MsG0480021822.01.T01:intron 30.0%
TCAGTGCAGAAAACAAAATT+GGG + Chr4:64772917-64772936 MsG0480021822.01.T01:intron 30.0%
TGAAAATTGAAAAGAGAGAG+AGG - Chr4:64771878-64771897 None:intergenic 30.0%
TGCCGTAATGTAATACTAAT+GGG - Chr4:64777052-64777071 None:intergenic 30.0%
TGCGACAAACATCAATAAAA+GGG - Chr4:64774445-64774464 None:intergenic 30.0%
TTAATTACAACAAAATGGGC+AGG + Chr4:64772019-64772038 MsG0480021822.01.T01:intron 30.0%
TTACAAGGTCGCTATTTATA+GGG - Chr4:64772539-64772558 None:intergenic 30.0%
TTAGACTATTGCCATTCAAT+AGG - Chr4:64776100-64776119 None:intergenic 30.0%
TTAGACTCTTCGCAAAATAA+TGG + Chr4:64775244-64775263 MsG0480021822.01.T01:intron 30.0%
! AATTTTCACTATCTGAAGGA+AGG - Chr4:64776997-64777016 None:intergenic 30.0%
! ACTAGAAAAAAAAGCTCTAG+TGG - Chr4:64775742-64775761 None:intergenic 30.0%
! AGGCTTCTTTTAAACTTCAA+TGG + Chr4:64774776-64774795 MsG0480021822.01.T01:intron 30.0%
! CTTGTAGATAAGGAATTTTG+AGG + Chr4:64775994-64776013 MsG0480021822.01.T01:intron 30.0%
! GTGCCTTGAATCAATTTTAA+AGG + Chr4:64777024-64777043 MsG0480021822.01.T01:CDS 30.0%
! TTGTCACGATCTTATCTTTT+AGG + Chr4:64773997-64774016 MsG0480021822.01.T01:intron 30.0%
!! AGAATGGTTTGGTATTTAGT+TGG + Chr4:64771735-64771754 MsG0480021822.01.T01:five_prime_UTR 30.0%
!! ATATAATGTGGTTTGTTTGG+CGG - Chr4:64774187-64774206 None:intergenic 30.0%
!! ATTATTTTGCGAAGAGTCTA+AGG - Chr4:64775245-64775264 None:intergenic 30.0%
!! GCTATTAAATTGTCGATTTC+CGG + Chr4:64773644-64773663 MsG0480021822.01.T01:intron 30.0%
!! TCCATAGCTTTGACTTTAAT+GGG + Chr4:64772338-64772357 MsG0480021822.01.T01:intron 30.0%
!! TTAGCTTTTGTTAATTACCC+TGG + Chr4:64772088-64772107 MsG0480021822.01.T01:intron 30.0%
AAAACTAATCCATACCCTCA+TGG + Chr4:64774671-64774690 MsG0480021822.01.T01:intron 35.0%
AAACACAGATAAATCCTACC+AGG - Chr4:64772109-64772128 None:intergenic 35.0%
AAATACCTTTCTGAGCATCT+TGG - Chr4:64774304-64774323 None:intergenic 35.0%
AACACAGATAAATCCTACCA+GGG - Chr4:64772108-64772127 None:intergenic 35.0%
AACACAGATAAATCCTAGCA+GGG - Chr4:64771958-64771977 None:intergenic 35.0%
AACTGAATCCGAATTTGGTT+TGG - Chr4:64775106-64775125 None:intergenic 35.0%
AATCTGCAGATCGAAAACAA+AGG + Chr4:64773491-64773510 MsG0480021822.01.T01:CDS 35.0%
ACAGTCAATATGCAGAGAAA+CGG + Chr4:64773579-64773598 MsG0480021822.01.T01:intron 35.0%
ACATGTGAACAGCAAAACAA+CGG - Chr4:64777464-64777483 None:intergenic 35.0%
ACCCATTAAAGTCAAAGCTA+TGG - Chr4:64772342-64772361 None:intergenic 35.0%
AGACAAGATTAGAACGTGAA+AGG + Chr4:64772680-64772699 MsG0480021822.01.T01:intron 35.0%
AGCATCTTGGAATCAGAATT+GGG - Chr4:64774291-64774310 None:intergenic 35.0%
AGTAGGAGTAGTATATTGCA+AGG + Chr4:64771687-64771706 MsG0480021822.01.T01:five_prime_UTR 35.0%
ATATCAGTGGCCTAAAAGAT+AGG - Chr4:64777733-64777752 None:intergenic 35.0%
ATCATACCCTATAAGCAGTT+AGG - Chr4:64772233-64772252 None:intergenic 35.0%
ATCGACAATTTAATAGCGAG+CGG - Chr4:64773641-64773660 None:intergenic 35.0%
ATTGGCGTAAACAAAATACC+CGG - Chr4:64777698-64777717 None:intergenic 35.0%
CAAAGAATATGCAGTACTAC+CGG - Chr4:64777263-64777282 None:intergenic 35.0%
CAAATACCATTCAATAGCAG+AGG + Chr4:64777778-64777797 MsG0480021822.01.T01:CDS 35.0%
CTAGAGTATATATCGACACA+AGG - Chr4:64775797-64775816 None:intergenic 35.0%
CTCAGTGCAGAAAACAAAAT+TGG + Chr4:64772916-64772935 MsG0480021822.01.T01:intron 35.0%
CTTACAAGGTCGCTATTTAT+AGG - Chr4:64772540-64772559 None:intergenic 35.0%
CTTCTTCAATTACCAATCCA+GGG + Chr4:64773212-64773231 MsG0480021822.01.T01:intron 35.0%
GCCCCATTAGTATTACATTA+CGG + Chr4:64777047-64777066 MsG0480021822.01.T01:CDS 35.0%
GCCGTAATGTAATACTAATG+GGG - Chr4:64777051-64777070 None:intergenic 35.0%
GCTGAAAACTATTTGATTCC+TGG + Chr4:64776474-64776493 MsG0480021822.01.T01:intron 35.0%
GTACAAGGTCGCTATTTATA+GGG + Chr4:64772974-64772993 MsG0480021822.01.T01:intron 35.0%
GTAGATTAGGAACCATGTTA+AGG + Chr4:64776383-64776402 MsG0480021822.01.T01:intron 35.0%
GTAGGATTTATCTGTGTTTC+TGG + Chr4:64772110-64772129 MsG0480021822.01.T01:intron 35.0%
GTGCCGTAATGTAATACTAA+TGG - Chr4:64777053-64777072 None:intergenic 35.0%
GTTCACAGTAATAAGATCTG+CGG - Chr4:64776303-64776322 None:intergenic 35.0%
TAGTAGGGACTAAACTTACA+AGG - Chr4:64772554-64772573 None:intergenic 35.0%
TATAGGGTATGATCACTTGA+TGG + Chr4:64772240-64772259 MsG0480021822.01.T01:intron 35.0%
TATCAGTGGCCTAAAAGATA+GGG - Chr4:64777732-64777751 None:intergenic 35.0%
TCATACCCTATAAGCAGTTA+GGG - Chr4:64772232-64772251 None:intergenic 35.0%
TCCTGTAGTAAAAACATCCA+GGG - Chr4:64774112-64774131 None:intergenic 35.0%
TCTTTATGACCTTGTGTTAC+TGG + Chr4:64777496-64777515 MsG0480021822.01.T01:intron 35.0%
TGGCAATAGTCTAACTTTCT+AGG + Chr4:64776106-64776125 MsG0480021822.01.T01:intron 35.0%
TGTACCTGACTTATTTACTG+AGG + Chr4:64774752-64774771 MsG0480021822.01.T01:intron 35.0%
TTATCATTCTCAGATGGTTG+AGG + Chr4:64775513-64775532 MsG0480021822.01.T01:intron 35.0%
TTCCTGTAGTAAAAACATCC+AGG - Chr4:64774113-64774132 None:intergenic 35.0%
TTCTCACAAGACAAAGACAA+AGG - Chr4:64771636-64771655 None:intergenic 35.0%
TTCTGTGTGCTGAAATGATT+AGG + Chr4:64775130-64775149 MsG0480021822.01.T01:CDS 35.0%
TTTGTAGAAACATGGAGTGA+TGG + Chr4:64775611-64775630 MsG0480021822.01.T01:CDS 35.0%
! AAAAGTGTAACCTTCAACAG+TGG - Chr4:64776275-64776294 None:intergenic 35.0%
! AACGTAAATATGAGTTGGAG+CGG + Chr4:64773462-64773481 MsG0480021822.01.T01:CDS 35.0%
! ACAGTGGTTTGGATAAGTAA+CGG - Chr4:64776259-64776278 None:intergenic 35.0%
! ACCTATACTTGTTCTAAACG+AGG + Chr4:64777129-64777148 MsG0480021822.01.T01:CDS 35.0%
! ACCTCGTTTAGAACAAGTAT+AGG - Chr4:64777133-64777152 None:intergenic 35.0%
! ACGAGGACAAACTTTAAGAA+GGG - Chr4:64774970-64774989 None:intergenic 35.0%
! ATGATCAATTTTGTTGCAGC+AGG + Chr4:64774357-64774376 MsG0480021822.01.T01:intron 35.0%
! CTATTGTCCCCTTTTCTTTA+GGG + Chr4:64776862-64776881 MsG0480021822.01.T01:CDS 35.0%
! CTTTTGTTAATTACCCTGGT+AGG + Chr4:64772092-64772111 MsG0480021822.01.T01:intron 35.0%
! GGTTTTTCTGATTTCCTTCA+TGG + Chr4:64773104-64773123 MsG0480021822.01.T01:intron 35.0%
! TTTTCTCTGATGTACATGTG+TGG + Chr4:64774404-64774423 MsG0480021822.01.T01:intron 35.0%
!! GACATTGTCTCTTTTGAAAG+AGG + Chr4:64774835-64774854 MsG0480021822.01.T01:CDS 35.0%
!! GGCCCTTTAAAATTGATTCA+AGG - Chr4:64777030-64777049 None:intergenic 35.0%
!! GTCCATAGCTTTGACTTTAA+TGG + Chr4:64772337-64772356 MsG0480021822.01.T01:intron 35.0%
!! TTAAGTGGACTAAACGTACA+AGG + Chr4:64772959-64772978 MsG0480021822.01.T01:intron 35.0%
!!! GGTATGGATTAGTTTTTGGT+AGG - Chr4:64774667-64774686 None:intergenic 35.0%
!!! GTTTTGCTGTTCACATGTTA+TGG + Chr4:64777466-64777485 MsG0480021822.01.T01:intron 35.0%
!!! TGAGGGTATGGATTAGTTTT+TGG - Chr4:64774671-64774690 None:intergenic 35.0%
!!! TGGATTAGTTTTTGGTAGGA+CGG - Chr4:64774663-64774682 None:intergenic 35.0%
AAAATCATGCCTTGAGCATC+GGG + Chr4:64774131-64774150 MsG0480021822.01.T01:CDS 40.0%
AAAGAAAAGGGGACAATAGG+AGG - Chr4:64776861-64776880 None:intergenic 40.0%
AACGAGGTTACTATTGATCG+TGG + Chr4:64777145-64777164 MsG0480021822.01.T01:CDS 40.0%
AAGGGTTGACATGAAGCAAA+AGG - Chr4:64775474-64775493 None:intergenic 40.0%
AATTGGGGTTTCCATTCCTA+AGG - Chr4:64774275-64774294 None:intergenic 40.0%
AATTTAATAGCGAGCGGCAT+TGG - Chr4:64773635-64773654 None:intergenic 40.0%
ACATGCTCTGGTAATATCAG+TGG - Chr4:64777746-64777765 None:intergenic 40.0%
ACCAAACCATTCTTTCTGTG+TGG - Chr4:64771728-64771747 None:intergenic 40.0%
AGAACGTAAGAGAGAGTAGT+AGG + Chr4:64771670-64771689 MsG0480021822.01.T01:five_prime_UTR 40.0%
AGACCTTAGAGCATAGTCAA+AGG - Chr4:64772279-64772298 None:intergenic 40.0%
AGAGAATAGGGAATAGGGAA+TGG - Chr4:64771777-64771796 None:intergenic 40.0%
AGAGGAGAGAATAGGGAATA+GGG - Chr4:64771782-64771801 None:intergenic 40.0%
AGCTAATTACCATGAGGGTA+TGG - Chr4:64774683-64774702 None:intergenic 40.0%
AGGTATCATCCAGTAACACA+AGG - Chr4:64777508-64777527 None:intergenic 40.0%
ATACAAAGGCTGAGGATAGA+TGG - Chr4:64775389-64775408 None:intergenic 40.0%
ATAGTTGCTGTCTGCACATT+TGG - Chr4:64776822-64776841 None:intergenic 40.0%
CAACACATGTGTGTACAAGA+AGG - Chr4:64775009-64775028 None:intergenic 40.0%
CAAGAGACCCTAAAGAAAAG+GGG - Chr4:64776872-64776891 None:intergenic 40.0%
CACATGTGTTGTGCTCTAAT+TGG + Chr4:64775018-64775037 MsG0480021822.01.T01:intron 40.0%
CAGACAGCAACTATGTTCAA+AGG + Chr4:64776828-64776847 MsG0480021822.01.T01:intron 40.0%
CATCATTTACTTAAGTGCCC+AGG - Chr4:64776495-64776514 None:intergenic 40.0%
CATGTCAACCCTTGGTTAAT+TGG + Chr4:64775481-64775500 MsG0480021822.01.T01:intron 40.0%
CATGTGAACAGCAAAACAAC+GGG - Chr4:64777463-64777482 None:intergenic 40.0%
CCAAACCATTCTTTCTGTGT+GGG - Chr4:64771727-64771746 None:intergenic 40.0%
CCAAGAGACCCTAAAGAAAA+GGG - Chr4:64776873-64776892 None:intergenic 40.0%
CCTAAAGAAAAGGGGACAAT+AGG - Chr4:64776864-64776883 None:intergenic 40.0%
CGAAGTTGAAGGATACAGAA+AGG - Chr4:64776906-64776925 None:intergenic 40.0%
CGGTAGTACTGCATATTCTT+TGG + Chr4:64777261-64777280 MsG0480021822.01.T01:CDS 40.0%
CGTACAAGGTCGCTATTTAT+AGG + Chr4:64772973-64772992 MsG0480021822.01.T01:intron 40.0%
CTGATTTCCTTCATGGAACA+GGG + Chr4:64773111-64773130 MsG0480021822.01.T01:intron 40.0%
CTTATCCAAACCACTGTTGA+AGG + Chr4:64776262-64776281 MsG0480021822.01.T01:intron 40.0%
GAAAATCATGCCTTGAGCAT+CGG + Chr4:64774130-64774149 MsG0480021822.01.T01:CDS 40.0%
GAACACAGATAAATCCTAGC+AGG - Chr4:64771959-64771978 None:intergenic 40.0%
GAAGAAGAGAGGAGAGAATA+GGG - Chr4:64771789-64771808 None:intergenic 40.0%
GAGAATAGGGAATAGGGAAT+GGG - Chr4:64771776-64771795 None:intergenic 40.0%
GAGCATCTTGGAATCAGAAT+TGG - Chr4:64774292-64774311 None:intergenic 40.0%
GATAGTACTTGCACAGTCAT+CGG - Chr4:64774627-64774646 None:intergenic 40.0%
GCATCTTGGAATCAGAATTG+GGG - Chr4:64774290-64774309 None:intergenic 40.0%
GCCTAAAAGATAGGGAATGT+GGG - Chr4:64777724-64777743 None:intergenic 40.0%
GCGAGAAGGTCAGAAAAAAA+TGG - Chr4:64773941-64773960 None:intergenic 40.0%
GCTAGGATTTATCTGTGTTC+TGG + Chr4:64771959-64771978 MsG0480021822.01.T01:intron 40.0%
GCTTCTTCAATTACCAATCC+AGG + Chr4:64773211-64773230 MsG0480021822.01.T01:intron 40.0%
GGACATTTGATATGAGATGG+AGG + Chr4:64776579-64776598 MsG0480021822.01.T01:intron 40.0%
GTCGCATTCAAACATCTGTA+AGG + Chr4:64774459-64774478 MsG0480021822.01.T01:intron 40.0%
GTTAGTTACTTGTGGTGAAC+TGG - Chr4:64776222-64776241 None:intergenic 40.0%
GTTGACCTTGTGATAACTCT+TGG + Chr4:64776029-64776048 MsG0480021822.01.T01:intron 40.0%
TACCAGAGCATGTGACTTTA+CGG + Chr4:64777753-64777772 MsG0480021822.01.T01:CDS 40.0%
TCCAAGAGACCCTAAAGAAA+AGG - Chr4:64776874-64776893 None:intergenic 40.0%
TCTGATTTCCTTCATGGAAC+AGG + Chr4:64773110-64773129 MsG0480021822.01.T01:intron 40.0%
TGAAGAAGAGAGGAGAGAAT+AGG - Chr4:64771790-64771809 None:intergenic 40.0%
TGACTCCCATTTCAAAGATC+TGG - Chr4:64775059-64775078 None:intergenic 40.0%
TGACTCCCTAACTGCTTATA+GGG + Chr4:64772224-64772243 MsG0480021822.01.T01:intron 40.0%
TGATTCCAAGATGCTCAGAA+AGG + Chr4:64774296-64774315 MsG0480021822.01.T01:CDS 40.0%
TGCAAGTACTATCGTGTTTG+AGG + Chr4:64774634-64774653 MsG0480021822.01.T01:intron 40.0%
TGTAACCTTCAACAGTGGTT+TGG - Chr4:64776270-64776289 None:intergenic 40.0%
TTATGATGATTGCTGGACGA+AGG + Chr4:64776643-64776662 MsG0480021822.01.T01:intron 40.0%
TTCAACAGAAAAAGGCGAGA+AGG - Chr4:64773955-64773974 None:intergenic 40.0%
TTCCTTCAGCAACTTCCTAA+GGG - Chr4:64773409-64773428 None:intergenic 40.0%
TTCGTTTCAACTTCCAACTG+CGG + Chr4:64775309-64775328 MsG0480021822.01.T01:intron 40.0%
TTCTTGCACAGCATTCATGA+GGG + Chr4:64777921-64777940 MsG0480021822.01.T01:CDS 40.0%
TTGACTCCCTAACTGCTTAT+AGG + Chr4:64772223-64772242 MsG0480021822.01.T01:intron 40.0%
TTTCCTTCAGCAACTTCCTA+AGG - Chr4:64773410-64773429 None:intergenic 40.0%
! AGGAGGATGTTGATAGAACA+TGG - Chr4:64777637-64777656 None:intergenic 40.0%
! CACGAGGACAAACTTTAAGA+AGG - Chr4:64774971-64774990 None:intergenic 40.0%
! CCTATTGTCCCCTTTTCTTT+AGG + Chr4:64776861-64776880 MsG0480021822.01.T01:CDS 40.0%
! CTTTTAGTGCCAATTTCCGT+GGG + Chr4:64772311-64772330 MsG0480021822.01.T01:intron 40.0%
! TGATTCGGACTTCCTTAACA+TGG - Chr4:64776398-64776417 None:intergenic 40.0%
! TTTTGCTTCATGTCAACCCT+TGG + Chr4:64775473-64775492 MsG0480021822.01.T01:intron 40.0%
!! AAACTTCAATGGTGCTGCAA+AGG + Chr4:64774787-64774806 MsG0480021822.01.T01:CDS 40.0%
!! TCCCTGGATGTTTTTACTAC+AGG + Chr4:64774108-64774127 MsG0480021822.01.T01:intron 40.0%
!! TTCAAGAAAGTACCTGAGGA+TGG - Chr4:64777306-64777325 None:intergenic 40.0%
!!! TTTGAAGACGGGGTTTTAGA+TGG - Chr4:64777665-64777684 None:intergenic 40.0%
AACCATTCTTTCTGTGTGGG+AGG - Chr4:64771724-64771743 None:intergenic 45.0%
AACCTGCAGATTTGAAGACG+GGG - Chr4:64777675-64777694 None:intergenic 45.0%
ACCATTCTTTCTGTGTGGGA+GGG - Chr4:64771723-64771742 None:intergenic 45.0%
ACTGCATATTCTTTGGCAGC+TGG + Chr4:64777268-64777287 MsG0480021822.01.T01:CDS 45.0%
AGAAGGGACATGCTTGCTTA+TGG - Chr4:64774954-64774973 None:intergenic 45.0%
ATATCGACACAAGGGTTCTC+AGG - Chr4:64775788-64775807 None:intergenic 45.0%
ATGAAACAATCTGCCGCAGT+TGG - Chr4:64775325-64775344 None:intergenic 45.0%
CAATAGCAGAGGATCTGCAT+GGG + Chr4:64777789-64777808 MsG0480021822.01.T01:CDS 45.0%
CCACGGAAATTGGCACTAAA+AGG - Chr4:64772313-64772332 None:intergenic 45.0%
CCCACACAGAAAGAATGGTT+TGG + Chr4:64771724-64771743 MsG0480021822.01.T01:five_prime_UTR 45.0%
CCTGACTTATTTACTGAGGC+AGG + Chr4:64774756-64774775 MsG0480021822.01.T01:intron 45.0%
CCTGCCTCAGTAAATAAGTC+AGG - Chr4:64774759-64774778 None:intergenic 45.0%
CGAATTTCCCTGTTCCATGA+AGG - Chr4:64773121-64773140 None:intergenic 45.0%
CTCCTCCAAGAGTTATCACA+AGG - Chr4:64776037-64776056 None:intergenic 45.0%
CTCCTCTCTTCTTCATTCCA+TGG + Chr4:64771795-64771814 MsG0480021822.01.T01:exon 45.0%
CTTCTTGCACAGCATTCATG+AGG + Chr4:64777920-64777939 MsG0480021822.01.T01:CDS 45.0%
GAACCTGCAGATTTGAAGAC+GGG - Chr4:64777676-64777695 None:intergenic 45.0%
GACCTTGTGATAACTCTTGG+AGG + Chr4:64776032-64776051 MsG0480021822.01.T01:intron 45.0%
GAGAGGAGAGAATAGGGAAT+AGG - Chr4:64771783-64771802 None:intergenic 45.0%
GAGATGCATTGTTTGCAGCA+TGG + Chr4:64777851-64777870 MsG0480021822.01.T01:CDS 45.0%
GATAGGGAATGTGGGCAAAT+TGG - Chr4:64777716-64777735 None:intergenic 45.0%
GCAGATCCTCTGCTATTGAA+TGG - Chr4:64777787-64777806 None:intergenic 45.0%
GCATTCATGAGGGTCTTCAT+TGG + Chr4:64777931-64777950 MsG0480021822.01.T01:CDS 45.0%
GGAACCTGCAGATTTGAAGA+CGG - Chr4:64777677-64777696 None:intergenic 45.0%
GGACCTTTGACTATGCTCTA+AGG + Chr4:64772273-64772292 MsG0480021822.01.T01:intron 45.0%
GGCCTAAAAGATAGGGAATG+TGG - Chr4:64777725-64777744 None:intergenic 45.0%
GTCTTCAAATCTGCAGGTTC+CGG + Chr4:64777676-64777695 MsG0480021822.01.T01:intron 45.0%
GTGATAACTCTTGGAGGAGA+TGG + Chr4:64776038-64776057 MsG0480021822.01.T01:intron 45.0%
TAAGATGGTCATCAGAACCC+TGG - Chr4:64773232-64773251 None:intergenic 45.0%
TCAAGGTTCTGTGGGAAGAA+TGG + Chr4:64772443-64772462 MsG0480021822.01.T01:intron 45.0%
TCAATAGCAGAGGATCTGCA+TGG + Chr4:64777788-64777807 MsG0480021822.01.T01:CDS 45.0%
TCACAAGCTCAATTCTCCCA+CGG + Chr4:64771825-64771844 MsG0480021822.01.T01:CDS 45.0%
TCCATTCCTAAGGACGTCAT+GGG - Chr4:64774265-64774284 None:intergenic 45.0%
TCTTCAAATCTGCAGGTTCC+GGG + Chr4:64777677-64777696 MsG0480021822.01.T01:intron 45.0%
TGCCATGGAATGAAGAAGAG+AGG - Chr4:64771800-64771819 None:intergenic 45.0%
TTCCATTCCTAAGGACGTCA+TGG - Chr4:64774266-64774285 None:intergenic 45.0%
TTGGAAGGATACAAAGGCTG+AGG - Chr4:64775397-64775416 None:intergenic 45.0%
TTTGTTCCCATGACGTCCTT+AGG + Chr4:64774256-64774275 MsG0480021822.01.T01:CDS 45.0%
! AATATGAGTTGGAGCGGACA+CGG + Chr4:64773468-64773487 MsG0480021822.01.T01:CDS 45.0%
! ATGGACTATCCCACGGAAAT+TGG - Chr4:64772323-64772342 None:intergenic 45.0%
! CAAAGCTATGGACTATCCCA+CGG - Chr4:64772330-64772349 None:intergenic 45.0%
! CCTTTTAGTGCCAATTTCCG+TGG + Chr4:64772310-64772329 MsG0480021822.01.T01:intron 45.0%
! CGTCATTTGATGGCAAAGAC+AGG + Chr4:64777812-64777831 MsG0480021822.01.T01:CDS 45.0%
! GCCCACATTCCCTATCTTTT+AGG + Chr4:64777720-64777739 MsG0480021822.01.T01:intron 45.0%
! TCAATATGAGCACCGTCTGT+GGG - Chr4:64775083-64775102 None:intergenic 45.0%
!! GCTCTTCAAGAAAGTACCTG+AGG - Chr4:64777310-64777329 None:intergenic 45.0%
!! GGTATGATCACTTGATGGTG+CGG + Chr4:64772245-64772264 MsG0480021822.01.T01:intron 45.0%
!! TGACTATGCTCTAAGGTCTC+AGG + Chr4:64772280-64772299 MsG0480021822.01.T01:intron 45.0%
!!! CCCTTTTCTTTAGGGTCTCT+TGG + Chr4:64776870-64776889 MsG0480021822.01.T01:CDS 45.0%
!!! AATTATCTATTTTTTTTAAA+GGG + Chr4:64772498-64772517 MsG0480021822.01.T01:intron 5.0%
!!! ATTATAAGTAAATTTTTTAT+AGG - Chr4:64772595-64772614 None:intergenic 5.0%
!!! TAATTATCTATTTTTTTTAA+AGG + Chr4:64772497-64772516 MsG0480021822.01.T01:intron 5.0%
AAAAGCTGCTGCTCAAGCTG+AGG + Chr4:64773427-64773446 MsG0480021822.01.T01:CDS 50.0%
AAATTCGAGTGTGACGTCGC+AGG + Chr4:64773134-64773153 MsG0480021822.01.T01:intron 50.0%
AACCCCGTCTTCAAATCTGC+AGG + Chr4:64777670-64777689 MsG0480021822.01.T01:intron 50.0%
ACAAGGGTTCTCAGGTGCAA+TGG - Chr4:64775780-64775799 None:intergenic 50.0%
AGGATCAATGGTCCATCCTC+AGG + Chr4:64777291-64777310 MsG0480021822.01.T01:CDS 50.0%
ATATGTGGAACCACGTGTCC+AGG + Chr4:64775556-64775575 MsG0480021822.01.T01:CDS 50.0%
ATGTCCGAACCGACTAATCC+AGG - Chr4:64772392-64772411 None:intergenic 50.0%
ATTCTTTCTGTGTGGGAGGG+AGG - Chr4:64771720-64771739 None:intergenic 50.0%
CACCGTAAAGTCACATGCTC+TGG - Chr4:64777758-64777777 None:intergenic 50.0%
CCTTTGTCACACGTGTGCAA+GGG + Chr4:64777212-64777231 MsG0480021822.01.T01:CDS 50.0%
CTTCCTAAGGGTCTTTGCGA+CGG - Chr4:64773397-64773416 None:intergenic 50.0%
CTTTGTCACACGTGTGCAAG+GGG + Chr4:64777213-64777232 MsG0480021822.01.T01:CDS 50.0%
GAAGGTTGAGCTACCATCTC+TGG + Chr4:64776661-64776680 MsG0480021822.01.T01:intron 50.0%
GAATCTCCATGACAAGCCGT+AGG - Chr4:64777891-64777910 None:intergenic 50.0%
GACAGGAAACAGTTAGCACC+AGG + Chr4:64777829-64777848 MsG0480021822.01.T01:CDS 50.0%
GACCCTTAGGAAGTTGCTGA+AGG + Chr4:64773404-64773423 MsG0480021822.01.T01:intron 50.0%
GCATATTCTTTGGCAGCTGG+AGG + Chr4:64777271-64777290 MsG0480021822.01.T01:CDS 50.0%
GCTGCAAACAATGCATCTCC+TGG - Chr4:64777850-64777869 None:intergenic 50.0%
GGAGAATTGAGCTTGTGAGG+AGG - Chr4:64771823-64771842 None:intergenic 50.0%
GTGGGAGAATTGAGCTTGTG+AGG - Chr4:64771826-64771845 None:intergenic 50.0%
GTTGCAGCAGGATTCCCTAT+TGG + Chr4:64774369-64774388 MsG0480021822.01.T01:intron 50.0%
TCCCATGACGTCCTTAGGAA+TGG + Chr4:64774261-64774280 MsG0480021822.01.T01:CDS 50.0%
TCCCTCCCACACAGAAAGAA+TGG + Chr4:64771719-64771738 MsG0480021822.01.T01:five_prime_UTR 50.0%
TCCTTTGTCACACGTGTGCA+AGG + Chr4:64777211-64777230 MsG0480021822.01.T01:CDS 50.0%
TCTGCATGGGCGTCATTTGA+TGG + Chr4:64777802-64777821 MsG0480021822.01.T01:CDS 50.0%
TCTTTGCGACGGCTAGAAGA+AGG - Chr4:64773386-64773405 None:intergenic 50.0%
TGGTCATCAGAACCCTGGAT+TGG - Chr4:64773227-64773246 None:intergenic 50.0%
TTTGGCAGCTGGAGGATCAA+TGG + Chr4:64777279-64777298 MsG0480021822.01.T01:CDS 50.0%
! CAATATGAGCACCGTCTGTG+GGG - Chr4:64775082-64775101 None:intergenic 50.0%
! GTCAATATGAGCACCGTCTG+TGG - Chr4:64775084-64775103 None:intergenic 50.0%
!! ATCACTTGATGGTGCGGACT+TGG + Chr4:64772251-64772270 MsG0480021822.01.T01:intron 50.0%
!! GGGATTGGTCCTGGATTAGT+CGG + Chr4:64772380-64772399 MsG0480021822.01.T01:intron 50.0%
!! TCACTTGATGGTGCGGACTT+GGG + Chr4:64772252-64772271 MsG0480021822.01.T01:intron 50.0%
!! TGGATTAGTCGGTTCGGACA+TGG + Chr4:64772391-64772410 MsG0480021822.01.T01:intron 50.0%
!! TGGTCCTGGATTAGTCGGTT+CGG + Chr4:64772385-64772404 MsG0480021822.01.T01:intron 50.0%
!!! GAAGACGGGGTTTTAGATGG+AGG - Chr4:64777662-64777681 None:intergenic 50.0%
!!! GGTTTTAGATGGAGGACAGG+AGG - Chr4:64777654-64777673 None:intergenic 50.0%
AATCCCACCGTCTACTAGCG+GGG - Chr4:64772366-64772385 None:intergenic 55.0%
AATGGGAGTCACCCCACAGA+CGG + Chr4:64775068-64775087 MsG0480021822.01.T01:CDS 55.0%
ACGTGTCCAGGTCGATCTTC+TGG + Chr4:64775568-64775587 MsG0480021822.01.T01:CDS 55.0%
ACTCCTCCAGAAGATCGACC+TGG - Chr4:64775577-64775596 None:intergenic 55.0%
AGAAGATCGACCTGGACACG+TGG - Chr4:64775569-64775588 None:intergenic 55.0%
AGCAGAGCGCAGTAGTAAGC+AGG + Chr4:64774870-64774889 MsG0480021822.01.T01:CDS 55.0%
ATGGGTTCCCCGCTAGTAGA+CGG + Chr4:64772356-64772375 MsG0480021822.01.T01:intron 55.0%
CAAGATCAGCCCGATGCTCA+AGG - Chr4:64774143-64774162 None:intergenic 55.0%
CAATCCCACCGTCTACTAGC+GGG - Chr4:64772367-64772386 None:intergenic 55.0%
CCAATCCCACCGTCTACTAG+CGG - Chr4:64772368-64772387 None:intergenic 55.0%
CCATGACAAGCCGTAGGAAC+AGG - Chr4:64777885-64777904 None:intergenic 55.0%
CCCTTGCACACGTGTGACAA+AGG - Chr4:64777215-64777234 None:intergenic 55.0%
CCTGTTCCTACGGCTTGTCA+TGG + Chr4:64777882-64777901 MsG0480021822.01.T01:CDS 55.0%
CTTACTACTGCGCTCTGCTG+TGG - Chr4:64774869-64774888 None:intergenic 55.0%
GAGGAGATGGCACTGTCCTA+TGG + Chr4:64776051-64776070 MsG0480021822.01.T01:intron 55.0%
TAGCCGTCGCAAAGACCCTT+AGG + Chr4:64773391-64773410 MsG0480021822.01.T01:intron 55.0%
TGTCCAGGTCGATCTTCTGG+AGG + Chr4:64775571-64775590 MsG0480021822.01.T01:CDS 55.0%
TTGTTTGCAGCATGGCACCC+TGG + Chr4:64777859-64777878 MsG0480021822.01.T01:CDS 55.0%
! AAGGGGACAATAGGAGGCAC+TGG - Chr4:64776855-64776874 None:intergenic 55.0%
!!! CGGGGTTTTAGATGGAGGAC+AGG - Chr4:64777657-64777676 None:intergenic 55.0%
ACAAGCCGTAGGAACAGGCC+AGG - Chr4:64777880-64777899 None:intergenic 60.0%
CAAGCCGTAGGAACAGGCCA+GGG - Chr4:64777879-64777898 None:intergenic 60.0%
CCGCTAGTAGACGGTGGGAT+TGG + Chr4:64772365-64772384 MsG0480021822.01.T01:intron 60.0%
CTCAAGCTGAGGCTGCCGAA+TGG + Chr4:64773438-64773457 MsG0480021822.01.T01:CDS 60.0%
GTCACACGTGTGCAAGGGGA+TGG + Chr4:64777217-64777236 MsG0480021822.01.T01:CDS 60.0%
GTGACGTCGCAGGCTGAGAA+TGG + Chr4:64773144-64773163 MsG0480021822.01.T01:intron 60.0%
GTTCCCCGCTAGTAGACGGT+GGG + Chr4:64772360-64772379 MsG0480021822.01.T01:intron 60.0%
!! GAGCTTGTGAGGAGGTGCCA+TGG - Chr4:64771815-64771834 None:intergenic 60.0%
!! GTAGACGGTGGGATTGGTCC+TGG + Chr4:64772371-64772390 MsG0480021822.01.T01:intron 60.0%
GGCACCCTGGCCTGTTCCTA+CGG + Chr4:64777872-64777891 MsG0480021822.01.T01:CDS 65.0%
GGTTCCCCGCTAGTAGACGG+TGG + Chr4:64772359-64772378 MsG0480021822.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 64771598 64777960 64771598 ID=MsG0480021822.01;Name=MsG0480021822.01
Chr4 mRNA 64771598 64777960 64771598 ID=MsG0480021822.01.T01;Parent=MsG0480021822.01;Name=MsG0480021822.01.T01;_AED=0.36;_eAED=0.36;_QI=216|0.62|0.66|1|0.62|0.66|9|0|419
Chr4 exon 64771598 64771846 64771598 ID=MsG0480021822.01.T01:exon:7878;Parent=MsG0480021822.01.T01
Chr4 exon 64773413 64773512 64773413 ID=MsG0480021822.01.T01:exon:7879;Parent=MsG0480021822.01.T01
Chr4 exon 64774130 64774317 64774130 ID=MsG0480021822.01.T01:exon:7880;Parent=MsG0480021822.01.T01
Chr4 exon 64774778 64774891 64774778 ID=MsG0480021822.01.T01:exon:7881;Parent=MsG0480021822.01.T01
Chr4 exon 64775060 64775151 64775060 ID=MsG0480021822.01.T01:exon:7882;Parent=MsG0480021822.01.T01
Chr4 exon 64775526 64775652 64775526 ID=MsG0480021822.01.T01:exon:7883;Parent=MsG0480021822.01.T01
Chr4 exon 64776831 64776909 64776831 ID=MsG0480021822.01.T01:exon:7884;Parent=MsG0480021822.01.T01
Chr4 exon 64777005 64777312 64777005 ID=MsG0480021822.01.T01:exon:7885;Parent=MsG0480021822.01.T01
Chr4 exon 64777742 64777960 64777742 ID=MsG0480021822.01.T01:exon:7886;Parent=MsG0480021822.01.T01
Chr4 five_prime_UTR 64771598 64771813 64771598 ID=MsG0480021822.01.T01:five_prime_utr;Parent=MsG0480021822.01.T01
Chr4 CDS 64771814 64771846 64771814 ID=MsG0480021822.01.T01:cds;Parent=MsG0480021822.01.T01
Chr4 CDS 64773413 64773512 64773413 ID=MsG0480021822.01.T01:cds;Parent=MsG0480021822.01.T01
Chr4 CDS 64774130 64774317 64774130 ID=MsG0480021822.01.T01:cds;Parent=MsG0480021822.01.T01
Chr4 CDS 64774778 64774891 64774778 ID=MsG0480021822.01.T01:cds;Parent=MsG0480021822.01.T01
Chr4 CDS 64775060 64775151 64775060 ID=MsG0480021822.01.T01:cds;Parent=MsG0480021822.01.T01
Chr4 CDS 64775526 64775652 64775526 ID=MsG0480021822.01.T01:cds;Parent=MsG0480021822.01.T01
Chr4 CDS 64776831 64776909 64776831 ID=MsG0480021822.01.T01:cds;Parent=MsG0480021822.01.T01
Chr4 CDS 64777005 64777312 64777005 ID=MsG0480021822.01.T01:cds;Parent=MsG0480021822.01.T01
Chr4 CDS 64777742 64777960 64777742 ID=MsG0480021822.01.T01:cds;Parent=MsG0480021822.01.T01
Gene Sequence

>MsG0480021822.01.T01

ATGGCACCTCCTCACAAGCTCAATTCTCCCACGGAAGTTGCTGAAGGAAAAGCTGCTGCTCAAGCTGAGGCTGCCGAATGGAAACGTAAATATGAGTTGGAGCGGACACGGAATCTGCAGATCGAAAACAAAGGAAAATCATGCCTTGAGCATCGGGCTGATCTTGACGACGTGAAGACAAATAACTCCGCCAAACAAACCACATTATATAAAGTTGAAGCTAACGGGCAGTCTGAAGAATGTTATTCAAGGAATGGTATTTGTTCCCATGACGTCCTTAGGAATGGAAACCCCAATTCTGATTCCAAGATGCTCAGAAAGGCTTCTTTTAAACTTCAATGGTGCTGCAAAGGCGAGCAAAGTGATCAGCACAAGCATGACATTGTCTCTTTTGAAAGAGGAAACATAACCACAGCAGAGCGCAGTAGTAAGCAGATCTTTGAAATGGGAGTCACCCCACAGACGGTGCTCATATTGACCAAACCAAATTCGGATTCAGTTAAAATTCTGTGTGCTGAAATGATTAGATGGTTGAGGCAGCATAAGAAACTACAAGTATATGTGGAACCACGTGTCCAGGTCGATCTTCTGGAGGAGTCATCATACTTTAACTTTGTAGAAACATGGAGTGATGGTAAGCAATCAAATATTGATACAGCAACTATGTTCAAAGGACCAGTGCCTCCTATTGTCCCCTTTTCTTTAGGGTCTCTTGGATTTATGACTCCTTTCTATAGTGAAAATTACAAAGAGTGCCTTGAATCAATTTTAAAGGGCCCCATTAGTATTACATTACGGCACCGTTTGATATGTCATGTTATACGAGATGCAGCTAAAAATGAATTTGAAACTGAAGAACCTATACTTGTTCTAAACGAGGTTACTATTGATCGTGGTATATCATCTTACCTCACAAATTTGGAATGTTACTGTGACAACTCCTTTGTCACACGTGTGCAAGGGGATGGATTAATTTTATCTACAACATCCGGTAGTACTGCATATTCTTTGGCAGCTGGAGGATCAATGGTCCATCCTCAGGCCACTGATATTACCAGAGCATGTGACTTTACGGTGCAAATACCATTCAATAGCAGAGGATCTGCATGGGCGTCATTTGATGGCAAAGACAGGAAACAGTTAGCACCAGGAGATGCATTGTTTGCAGCATGGCACCCTGGCCTGTTCCTACGGCTTGTCATGGAGATTCTACTAGTGACTTCTTGCACAGCATTCATGAGGGTCTTCATTGGAATTTGA
Protein sequence

>MsG0480021822.01.T01

MAPPHKLNSPTEVAEGKAAAQAEAAEWKRKYELERTRNLQIENKGKSCLEHRADLDDVKTNNSAKQTTLYKVEANGQSEECYSRNGICSHDVLRNGNPNSDSKMLRKASFKLQWCCKGEQSDQHKHDIVSFERGNITTAERSSKQIFEMGVTPQTVLILTKPNSDSVKILCAEMIRWLRQHKKLQVYVEPRVQVDLLEESSYFNFVETWSDGKQSNIDTATMFKGPVPPIVPFSLGSLGFMTPFYSENYKECLESILKGPISITLRHRLICHVIRDAAKNEFETEEPILVLNEVTIDRGISSYLTNLECYCDNSFVTRVQGDGLILSTTSGSTAYSLAAGGSMVHPQATDITRACDFTVQIPFNSRGSAWASFDGKDRKQLAPGDALFAAWHPGLFLRLVMEILLVTSCTAFMRVFIGI*