AlfalfaGEDB | MsG0480019280.01

M. sativa cultivar ZhongmuNo.1 / MsG0480019280.01

KEGG: -
GO: GO:0006869 GO:0008289
PFAM: PF00234

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019280.01.T01	XP_039689730.1	76.86	121	28	0	1	121	1	121	6.91E-58	186

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019280.01.T01	Q39950	47.917	96	48	2	18	113	15	108	4.39E-25	95.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019280.01.T01	A0A396I196	76.860	121	28	0	1	121	1	121	3.30e-58	186

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0480019280.01	MsG0680031468.01	0.801207	1.003872e-48	4.766270e-46

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019280.01.T01	MTR_4g028190	86.667	105	14	0	1	105	1	105	1.29e-61	185
MsG0480019280.01.T01	MTR_7g072930	48.571	105	52	2	1	105	1	103	1.41e-29	105
MsG0480019280.01.T01	MTR_7g073170	46.226	106	54	3	1	106	1	103	2.72e-27	98.2
MsG0480019280.01.T01	MTR_7g073150	44.762	105	56	2	1	105	1	103	9.77e-27	97.4
MsG0480019280.01.T01	MTR_7g072830	41.228	114	64	3	1	113	1	112	2.09e-25	93.6
MsG0480019280.01.T01	MTR_4g027840	46.078	102	53	2	5	106	1	100	2.93e-24	91.3
MsG0480019280.01.T01	MTR_7g073120	42.991	107	59	2	1	106	1	106	4.13e-24	91.3
MsG0480019280.01.T01	MTR_4g027800	45.098	102	54	2	5	106	1	100	5.10e-24	89.7
MsG0480019280.01.T01	MTR_4g428370	44.118	102	55	2	5	106	58	157	2.69e-23	89.7
MsG0480019280.01.T01	MTR_7g072730	45.192	104	54	3	1	103	1	102	6.52e-22	85.9

Showing 1 to 10 of 29 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019280.01.T01	AT5G59320	40.777	103	57	2	4	106	2	100	7.52e-21	81.6
MsG0480019280.01.T01	AT2G15050	44.660	103	51	4	7	105	4	104	4.20e-20	79.7
MsG0480019280.01.T01	AT2G15050	44.660	103	51	4	7	105	4	104	5.15e-20	79.7
MsG0480019280.01.T01	AT2G38540	46.078	102	51	4	7	106	4	103	5.29e-20	79.7
MsG0480019280.01.T01	AT2G15050	44.660	103	51	4	7	105	4	104	7.55e-20	79.3
MsG0480019280.01.T01	AT5G59310	38.462	104	55	4	4	106	2	97	3.23e-17	72.4
MsG0480019280.01.T01	AT5G01870	39.241	79	45	2	29	105	23	100	2.79e-15	67.4
MsG0480019280.01.T01	AT3G51600	40.404	99	55	4	7	103	4	100	8.65e-15	66.2
MsG0480019280.01.T01	AT2G38530	39.394	99	56	4	7	103	4	100	8.84e-15	66.2
MsG0480019280.01.T01	AT4G33355	34.043	94	61	1	13	106	12	104	1.70e-14	65.5

Showing 1 to 10 of 15 entries

Previous1 2Next

Find 41 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTTAACCCACATCTGCCA+GGG	0.625369	4:+17660263	None:intergenic
ACAAAATTGGTACCATGCGT+CGG	0.556839	4:-17660451	MsG0480019280.01.T01:CDS
ACACCATCGCAGCACGCTTG+AGG	0.527998	4:+17660400	None:intergenic
ACCATGCGTCGGGTATGTGA+CGG	0.581360	4:-17660440	MsG0480019280.01.T01:CDS
ACCGCTGCTTCCGCGATCCA+TGG	0.463522	4:-17660313	MsG0480019280.01.T01:CDS
AGCAGCAGCTACAGCTTAGA+GGG	0.465447	4:-17659650	MsG0480019280.01.T01:CDS
AGCGGTCTTGATACACCTAC+AGG	0.560408	4:+17660330	None:intergenic
AGCGTGCTGCGATGGTGTTA+AGG	0.499638	4:-17660395	MsG0480019280.01.T01:CDS
ATTCAATATGTCTAGCTCAA+TGG	0.509668	4:-17660566	None:intergenic
CAAAATTGGTACCATGCGTC+GGG	0.511654	4:-17660450	MsG0480019280.01.T01:CDS

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCTCTTATGTGATTTGAGT+TGG	+	Chr4:17660385-17660404	None:intergenic	30.0%
ACAAAATTGGTACCATGCGT+CGG	-	Chr4:17659731-17659750	MsG0480019280.01.T01:intron	40.0%
AAGTTAACCCACATCTGCCA+GGG	+	Chr4:17659922-17659941	None:intergenic	45.0%
CAAAATTGGTACCATGCGTC+GGG	-	Chr4:17659732-17659751	MsG0480019280.01.T01:intron	45.0%
CATATTCAGTCCATGGATCG+CGG	+	Chr4:17659882-17659901	None:intergenic	45.0%
GAGTGTCCATATTCAGTCCA+TGG	+	Chr4:17659889-17659908	None:intergenic	45.0%
AGCAGCAGCTACAGCTTAGA+GGG	-	Chr4:17660532-17660551	MsG0480019280.01.T01:CDS	50.0%
AGCGGTCTTGATACACCTAC+AGG	+	Chr4:17659855-17659874	None:intergenic	50.0%
CAAGTTAACCCACATCTGCC+AGG	+	Chr4:17659923-17659942	None:intergenic	50.0%
CGTGACCAAATCTGATCGTC+AGG	-	Chr4:17659826-17659845	MsG0480019280.01.T01:intron	50.0%

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	17659623	17660581	17659623	ID=MsG0480019280.01;Name=MsG0480019280.01
Chr4	mRNA	17659623	17660581	17659623	ID=MsG0480019280.01.T01;Parent=MsG0480019280.01;Name=MsG0480019280.01.T01;_AED=0.50;_eAED=0.57;_QI=0\|0\|0\|1\|1\|1\|2\|0\|137
Chr4	exon	17660227	17660581	17660227	ID=MsG0480019280.01.T01:exon:5483;Parent=MsG0480019280.01.T01
Chr4	exon	17659623	17659681	17659623	ID=MsG0480019280.01.T01:exon:5482;Parent=MsG0480019280.01.T01
Chr4	CDS	17660227	17660581	17660227	ID=MsG0480019280.01.T01:cds;Parent=MsG0480019280.01.T01
Chr4	CDS	17659623	17659681	17659623	ID=MsG0480019280.01.T01:cds;Parent=MsG0480019280.01.T01

Gene Sequence

>MsG0480019280.01.T01

ATGTCTAGCTCAATGGTGTTGGTGAAGGTTACTTGCTTGACAATGATGATGTGCATGGTTTTAGGGCTACCACAAACTCTTGATGCTCTCAGTTGTCTTCAAGTAGAAACAAAATTGGTACCATGCGTCGGGTATGTGACGGGAAATGGTGGTGTTGTCCCTCAAGCGTGCTGCGATGGTGTTAAGGCCATACACGACCAAGCCGTGACCAAATCTGATCGTCAGGACGCCTGTAGGTGTATCAAGACCGCTGCTTCCGCGATCCATGGACTGAATATGGACACTCTTGCTAACATCCCTGGCAGATGTGGGTTAACTTGCCTTATACTCTTGGTCCCTCCACAAGCTGCGAAAAGATTGAGTGAGCAGCAGCTACAGCTTAGAGGGGGTATTGATGTTGTTTATCAAGTTTGA

Protein sequence

>MsG0480019280.01.T01

MSSSMVLVKVTCLTMMMCMVLGLPQTLDALSCLQVETKLVPCVGYVTGNGGVVPQACCDGVKAIHDQAVTKSDRQDACRCIKTAASAIHGLNMDTLANIPGRCGLTCLILLVPPQAAKRLSEQQLQLRGGIDVVYQV*