AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019722.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019722.01.T01 MTR_5g078250 39.628 376 217 6 1 371 1 371 6.04e-92 285
MsG0480019722.01.T01 MTR_8g062030 38.889 378 219 5 1 372 1 372 1.17e-90 283
MsG0480019722.01.T01 MTR_1g075850 39.045 356 205 5 1 353 1 347 7.33e-85 267
MsG0480019722.01.T01 MTR_6g052340 49.412 255 116 5 1 248 1 249 4.41e-72 237
MsG0480019722.01.T01 MTR_2g048560 30.481 374 256 3 1 371 1 373 6.42e-54 187
MsG0480019722.01.T01 MTR_4g036240 32.222 360 234 5 17 371 17 371 6.23e-53 184
MsG0480019722.01.T01 MTR_6g039240 34.746 236 141 1 8 243 8 230 1.79e-45 158
MsG0480019722.01.T01 MTR_8g463820 34.746 236 141 1 8 243 8 230 2.79e-45 157
MsG0480019722.01.T01 MTR_4g046077 36.923 260 126 6 103 349 1 235 7.07e-45 159
MsG0480019722.01.T01 MTR_8g088810 36.179 246 153 1 8 249 8 253 1.21e-44 156
MsG0480019722.01.T01 MTR_1g094230 33.898 236 143 1 8 243 8 230 3.63e-44 155
MsG0480019722.01.T01 MTR_8g479260 29.330 358 247 5 18 371 20 375 4.85e-44 160
MsG0480019722.01.T01 MTR_2g008650 29.330 358 247 5 18 371 20 375 9.58e-44 159
MsG0480019722.01.T01 MTR_3g056270 31.498 327 214 5 50 371 209 530 9.90e-43 158
MsG0480019722.01.T01 MTR_3g056270 37.824 193 120 0 17 209 17 209 8.06e-33 130
MsG0480019722.01.T01 MTR_8g062060 28.280 343 226 4 13 344 13 346 1.28e-39 147
MsG0480019722.01.T01 MTR_2g048550 30.000 360 235 7 21 371 21 372 7.20e-38 142
MsG0480019722.01.T01 MTR_6g069230 34.034 238 151 3 4 239 100 333 3.65e-37 137
MsG0480019722.01.T01 MTR_2g062200 40.588 170 101 0 44 213 1 170 4.21e-35 127
MsG0480019722.01.T01 MTR_7g089660 33.649 211 126 2 8 218 8 204 8.41e-35 128
MsG0480019722.01.T01 MTR_3g056240 37.949 195 121 0 17 211 17 211 1.11e-34 130
MsG0480019722.01.T01 MTR_2g054710 34.112 214 139 2 18 230 20 232 2.36e-34 128
MsG0480019722.01.T01 MTR_4g036240 30.068 296 193 5 83 371 3 291 3.59e-34 132
MsG0480019722.01.T01 MTR_8g059025 44.203 138 77 0 1 138 1 138 1.02e-33 122
MsG0480019722.01.T01 MTR_6g051890 43.226 155 88 0 1 155 5 159 1.20e-32 126
MsG0480019722.01.T01 MTR_6g051890 43.421 76 42 1 287 362 204 278 1.99e-12 68.6
MsG0480019722.01.T01 MTR_3g044760 32.099 243 158 2 1 243 1 236 2.97e-31 123
MsG0480019722.01.T01 MTR_8g467450 41.727 139 81 0 1 139 1 139 5.95e-31 115
MsG0480019722.01.T01 MTR_6g013455 30.085 236 135 2 8 243 8 213 4.71e-30 116
MsG0480019722.01.T01 MTR_1g050500 30.108 279 170 9 81 349 5 268 4.14e-29 118
MsG0480019722.01.T01 MTR_4g471610 34.940 166 107 1 8 173 8 172 5.66e-29 110
MsG0480019722.01.T01 MTR_3g078440 34.940 166 107 1 8 173 8 172 5.66e-29 110
MsG0480019722.01.T01 MTR_8g036090 34.940 166 107 1 8 173 8 172 5.66e-29 110
MsG0480019722.01.T01 MTR_1g036740 34.940 166 107 1 8 173 8 172 1.01e-28 110
MsG0480019722.01.T01 MTR_8g096680 34.940 166 107 1 8 173 8 172 1.01e-28 110
MsG0480019722.01.T01 MTR_3g095950 34.337 166 108 1 8 173 8 172 2.32e-28 109
MsG0480019722.01.T01 MTR_3g116750 34.337 166 108 1 8 173 8 172 2.47e-28 109
MsG0480019722.01.T01 MTR_7g093810 33.735 166 109 1 8 173 8 172 4.06e-27 105
MsG0480019722.01.T01 MTR_4g028320 36.601 153 96 1 21 173 2 153 6.53e-26 102
MsG0480019722.01.T01 MTR_5g085220 32.716 162 109 0 8 169 8 169 8.42e-25 99.8
MsG0480019722.01.T01 MTR_5g055160 34.211 152 100 0 8 159 8 159 2.85e-24 100
MsG0480019722.01.T01 MTR_0042s0170 40.426 141 80 2 103 240 1 140 4.20e-24 102
MsG0480019722.01.T01 MTR_4g036240 28.632 234 155 6 144 371 1 228 5.71e-24 102
MsG0480019722.01.T01 MTR_7g451880 29.167 216 150 3 22 235 23 237 1.06e-22 97.8
MsG0480019722.01.T01 MTR_1g060700 37.908 153 63 1 120 240 18 170 1.28e-22 99.4
MsG0480019722.01.T01 MTR_1g105785 25.654 382 266 11 1 373 1 373 1.51e-22 99.8
MsG0480019722.01.T01 MTR_4g071730 36.000 125 67 1 119 243 1 112 2.41e-22 92.4
MsG0480019722.01.T01 MTR_4g058660 28.704 216 151 3 22 235 22 236 1.77e-21 94.4
MsG0480019722.01.T01 MTR_3g084550 35.606 132 84 1 42 173 1 131 2.19e-21 89.4
MsG0480019722.01.T01 MTR_1g072220 35.606 132 84 1 42 173 1 131 6.04e-21 88.2
MsG0480019722.01.T01 MTR_1g023370 26.860 242 170 4 22 257 22 262 9.79e-21 92.0
MsG0480019722.01.T01 MTR_2g099880 36.364 132 83 1 42 173 7 137 3.20e-20 86.3
MsG0480019722.01.T01 MTR_6g445520 28.571 224 150 5 142 356 1 223 3.65e-20 91.7
MsG0480019722.01.T01 MTR_7g074180 27.027 222 159 3 22 241 22 242 4.24e-20 90.5
MsG0480019722.01.T01 MTR_8g446640 27.468 233 162 4 22 248 3 234 4.48e-20 90.1
MsG0480019722.01.T01 MTR_5g030110 27.468 233 162 4 22 248 22 253 6.56e-20 89.7
MsG0480019722.01.T01 MTR_2g007410 27.468 233 162 4 22 248 22 253 6.56e-20 89.7
MsG0480019722.01.T01 MTR_7g024060 27.468 233 162 4 22 248 22 253 6.69e-20 89.7
MsG0480019722.01.T01 MTR_6g087820 27.468 233 162 4 22 248 22 253 6.69e-20 89.7
MsG0480019722.01.T01 MTR_5g081190 27.468 233 162 4 22 248 22 253 6.69e-20 89.7
MsG0480019722.01.T01 MTR_5g091480 27.468 233 162 4 22 248 22 253 6.69e-20 89.7
MsG0480019722.01.T01 MTR_5g056290 27.468 233 162 4 22 248 22 253 6.69e-20 89.7
MsG0480019722.01.T01 MTR_3g031190 27.468 233 162 4 22 248 22 253 6.69e-20 89.7
MsG0480019722.01.T01 MTR_2g005490 27.468 233 162 4 22 248 22 253 6.69e-20 89.7
MsG0480019722.01.T01 MTR_2g010570 27.468 233 162 4 22 248 22 253 6.69e-20 89.7
MsG0480019722.01.T01 MTR_2g032570 33.333 168 109 2 8 173 8 174 1.02e-19 85.9
MsG0480019722.01.T01 MTR_4g016120 35.484 124 79 1 50 173 41 163 1.29e-19 85.5
MsG0480019722.01.T01 MTR_6g465570 35.032 157 101 1 14 170 10 165 1.55e-19 85.5
MsG0480019722.01.T01 MTR_3g015660 27.315 216 154 3 22 235 22 236 1.61e-19 87.0
MsG0480019722.01.T01 MTR_8g461360 35.338 133 86 0 60 192 3 135 1.63e-19 86.7
MsG0480019722.01.T01 MTR_6g033945 40.141 142 51 3 133 240 31 172 1.88e-19 86.7
MsG0480019722.01.T01 MTR_8g469510 48.148 81 42 0 21 101 4 84 2.94e-19 82.0
MsG0480019722.01.T01 MTR_5g004860 25.208 361 222 12 4 338 4 342 3.30e-19 89.4
MsG0480019722.01.T01 MTR_2g450060 24.084 382 251 13 1 361 5 368 7.56e-19 88.6
MsG0480019722.01.T01 MTR_4g022520 36.585 123 77 1 51 173 11 132 2.18e-18 83.2
MsG0480019722.01.T01 MTR_1g052715 29.000 200 138 4 42 238 1 199 2.54e-18 85.5
MsG0480019722.01.T01 MTR_5g056060 32.000 150 96 1 10 159 10 153 2.64e-18 84.0
MsG0480019722.01.T01 MTR_2g010270 26.860 242 161 5 22 248 3 243 2.73e-18 85.1
MsG0480019722.01.T01 MTR_5g070620 45.455 77 42 0 2 78 27 103 6.05e-18 79.0
MsG0480019722.01.T01 MTR_3g055660 27.236 246 170 6 4 245 31 271 1.34e-17 84.7
MsG0480019722.01.T01 MTR_4g014890 27.236 246 170 6 4 245 31 271 1.40e-17 84.3
MsG0480019722.01.T01 MTR_7g104000 30.921 152 99 1 8 159 8 153 1.54e-17 81.6
MsG0480019722.01.T01 MTR_1g082860 27.907 215 133 5 22 229 22 221 2.01e-17 82.0
MsG0480019722.01.T01 MTR_4g085760 25.429 350 231 13 8 339 14 351 4.57e-17 83.2
MsG0480019722.01.T01 MTR_1g011490 26.050 238 150 6 22 248 22 244 6.52e-17 81.3
MsG0480019722.01.T01 MTR_7g032985 46.479 71 38 0 100 170 1 71 1.91e-16 73.9
MsG0480019722.01.T01 MTR_8g078450 40.404 99 58 1 75 173 2 99 3.26e-16 75.9
MsG0480019722.01.T01 MTR_1788s0010 31.298 131 90 0 9 139 9 139 3.52e-16 75.1
MsG0480019722.01.T01 MTR_5g007120 35.455 110 71 0 50 159 19 128 3.77e-16 77.4
MsG0480019722.01.T01 MTR_1g043690 23.100 329 210 9 18 324 25 332 1.46e-15 78.6
MsG0480019722.01.T01 MTR_5g068430 29.252 147 97 1 8 154 8 147 1.58e-15 74.7
MsG0480019722.01.T01 MTR_6g051880 26.160 237 144 4 70 303 2 210 2.31e-15 77.4
MsG0480019722.01.T01 MTR_6g059860 27.419 248 167 7 4 245 25 265 2.89e-15 77.4
MsG0480019722.01.T01 MTR_3g037500 32.515 163 102 4 50 208 2 160 3.72e-15 75.5
MsG0480019722.01.T01 MTR_2g021620 36.154 130 51 1 142 239 156 285 4.63e-15 75.1
MsG0480019722.01.T01 MTR_5g053590 26.749 243 170 5 1 240 1 238 5.57e-15 76.6
MsG0480019722.01.T01 MTR_7g110100 24.370 357 250 10 1 346 1 348 1.20e-13 72.4
MsG0480019722.01.T01 MTR_8g005940 29.193 161 112 2 22 181 22 181 1.69e-13 70.9
MsG0480019722.01.T01 MTR_2g058350 31.176 170 111 3 4 170 4 170 2.61e-13 71.2
MsG0480019722.01.T01 MTR_8g027910 24.303 251 169 8 1 240 11 251 3.31e-13 69.3
MsG0480019722.01.T01 MTR_3g452170 24.518 363 241 11 1 344 1 349 5.36e-13 70.5
MsG0480019722.01.T01 MTR_5g084280 48.571 70 36 0 171 240 43 112 5.95e-13 65.9
MsG0480019722.01.T01 MTR_5g019960 27.895 190 132 5 53 239 59 246 6.46e-13 68.6
MsG0480019722.01.T01 MTR_5g045850 27.368 190 128 4 51 238 36 217 8.85e-13 68.6
MsG0480019722.01.T01 MTR_7g117425 38.889 108 60 1 1 108 1 102 5.56e-12 65.9
MsG0480019722.01.T01 MTR_7g045450 24.887 221 150 3 21 240 21 226 6.05e-12 65.9
MsG0480019722.01.T01 MTR_6g073570 24.887 221 150 3 21 240 21 226 6.05e-12 65.9
MsG0480019722.01.T01 MTR_7g051840 28.906 128 87 1 44 171 1 124 2.98e-11 60.8
MsG0480019722.01.T01 MTR_3g067530 36.364 99 58 2 75 173 2 95 3.82e-11 60.5
MsG0480019722.01.T01 MTR_7g051400 26.977 215 149 3 1 213 1 209 4.30e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019722.01.T01 AT1G52950 28.270 237 165 3 4 239 6 238 2.19e-20 93.2
MsG0480019722.01.T01 AT2G05642 23.077 364 202 10 22 350 22 342 1.72e-14 75.1

Find 83 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCAAACATACATATTT+TGG 0.148253 4:-25779812 None:intergenic
GATCAATTGCAATCTTTAAT+TGG 0.183529 4:+25779994 MsG0480019722.01.T01:CDS
TATATTTGTGTAGATGTTAT+TGG 0.194687 4:+25779736 MsG0480019722.01.T01:intron
AGCTGGCAACGACGAATTTC+AGG 0.259557 4:-25779582 None:intergenic
TGGATGGATCCACCACTTAA+AGG 0.269435 4:+25778969 None:intergenic
GCACATCTCTTGCACATATA+CGG 0.299016 4:-25780654 None:intergenic
AAACAGATGCAGCAACTCTT+TGG 0.301354 4:-25779382 None:intergenic
CCATTTCTAGTGACTCAATT+AGG 0.312119 4:-25779082 None:intergenic
CAACGATGGTTCGAATTTAT+AGG 0.326268 4:+25779027 MsG0480019722.01.T01:CDS
GCCAACCTAAAATGTTTAGA+AGG 0.328250 4:-25780360 None:intergenic
GGTTTGTGTGATGTTGTTCC+TGG 0.328369 4:+25778990 MsG0480019722.01.T01:CDS
GTCCTGTATTGTCCATTTGC+TGG 0.349552 4:-25779459 None:intergenic
GACCTAATCTGAACAAATAA+AGG 0.349950 4:-25780401 None:intergenic
CTTGAACATGACTTCTTAGT+TGG 0.368764 4:+25779603 MsG0480019722.01.T01:CDS
TTCTATGTTATTCCAGCAAA+TGG 0.374137 4:+25779447 MsG0480019722.01.T01:CDS
CCTAATTGAGTCACTAGAAA+TGG 0.379785 4:+25779082 MsG0480019722.01.T01:CDS
TGTATGAATGTAGGATTCTT+AGG 0.399092 4:-25780877 None:intergenic
AACAGATGCAGCAACTCTTT+GGG 0.404351 4:-25779381 None:intergenic
CACTGCGAGAGAATACATTA+AGG 0.405811 4:+25779777 MsG0480019722.01.T01:CDS
ATCCTTTATTTGTTCAGATT+AGG 0.415935 4:+25780399 MsG0480019722.01.T01:CDS
TCAATTAGGCTGACATCAAA+AGG 0.418960 4:-25779068 None:intergenic
TTAATTGGAAAGCCTGTTGA+AGG 0.438892 4:+25780009 MsG0480019722.01.T01:CDS
CACTTGGAACATAAGTTTGT+AGG 0.439169 4:-25779493 None:intergenic
GCAAACTCAATTACAACCAC+TGG 0.440173 4:-25780036 None:intergenic
TGGCCGAGGGTGATGTCTAC+AGG 0.450351 4:+25779415 MsG0480019722.01.T01:CDS
ACCACTGGAAAACCTTCAAC+AGG 0.454638 4:-25780021 None:intergenic
GTCAAGGCGATGGTGGATGA+TGG 0.460079 4:+25780821 MsG0480019722.01.T01:CDS
GAGTTGCTGCATCTGTTTGA+AGG 0.460099 4:+25779387 MsG0480019722.01.T01:CDS
AAATTTGAATGTGTATTGTT+TGG 0.462802 4:+25779961 MsG0480019722.01.T01:CDS
TTTCAACCACTGTGTTCACT+TGG 0.471431 4:-25779509 None:intergenic
GTGTGTCACAAGTTGTTGTC+TGG 0.474115 4:+25780621 MsG0480019722.01.T01:CDS
GTGCTGAAGGTGAGGATTGG+TGG 0.474451 4:+25780586 MsG0480019722.01.T01:CDS
TGGTTCGAATTTATAGGCTA+TGG 0.475300 4:+25779033 MsG0480019722.01.T01:CDS
CTGAAAATCAGAGATTGATC+AGG 0.483181 4:-25780919 None:intergenic
GTTGACCATGCAAGAGCTCC+AGG 0.488510 4:-25779008 None:intergenic
GATGTTATTGGATTTCTCAC+TGG 0.489089 4:+25779748 MsG0480019722.01.T01:intron
AACATAAGTTTGTAGGAATG+AGG 0.501981 4:-25779486 None:intergenic
TCCTCACATTCCCGAGGTGG+AGG 0.502035 4:+25780224 MsG0480019722.01.T01:CDS
GTTTGAAGGGAAGGTGGCCG+AGG 0.502591 4:+25779401 MsG0480019722.01.T01:CDS
AGGCTGACATCAAAAGGGGC+AGG 0.508141 4:-25779062 None:intergenic
GTGAGGATTGATTGAAATCC+TGG 0.509257 4:-25780208 None:intergenic
TTGTTCCTGGAGCTCTTGCA+TGG 0.516660 4:+25779003 MsG0480019722.01.T01:CDS
TATTGATGAAGGATATCCCT+TGG 0.528343 4:+25780164 MsG0480019722.01.T01:intron
CAATTAGGCTGACATCAAAA+GGG 0.529579 4:-25779067 None:intergenic
GGTAGGTTGTGCTGAAGGTG+AGG 0.530955 4:+25780578 MsG0480019722.01.T01:intron
TCAAGGCGATGGTGGATGAT+GGG 0.537583 4:+25780822 MsG0480019722.01.T01:CDS
CTAGAAAACGATAACAAATG+AGG 0.539228 4:-25779555 None:intergenic
TTCCAGCAAATGGACAATAC+AGG 0.542173 4:+25779457 MsG0480019722.01.T01:CDS
TAGAAAACGATAACAAATGA+GGG 0.543195 4:-25779554 None:intergenic
GTTGTGCTGAAGGTGAGGAT+TGG 0.555547 4:+25780583 MsG0480019722.01.T01:CDS
TTCATAGCACTTTGGACCAA+GGG 0.557765 4:-25780180 None:intergenic
TCCTCCACCTCGGGAATGTG+AGG 0.560100 4:-25780225 None:intergenic
AGTTGCTGCATCTGTTTGAA+GGG 0.561556 4:+25779388 MsG0480019722.01.T01:CDS
GCTGCATCTGTTTGAAGGGA+AGG 0.565532 4:+25779392 MsG0480019722.01.T01:CDS
TGGTGATATTCATAGCACTT+TGG 0.568866 4:-25780188 None:intergenic
ACGTGTCGGTGTATGAATGT+AGG 0.572318 4:-25780886 None:intergenic
CTAAGAAGTCATGTTCAAGC+TGG 0.572895 4:-25779599 None:intergenic
ACATCACACAAACCTTTAAG+TGG 0.573399 4:-25778981 None:intergenic
ATTCATAGCACTTTGGACCA+AGG 0.586805 4:-25780181 None:intergenic
CGTTTGGTAGGTTGTGCTGA+AGG 0.587266 4:+25780573 MsG0480019722.01.T01:intron
CTAAAATGTTTAGAAGGGAA+AGG 0.589104 4:-25780354 None:intergenic
CAGAGATTGATCAGGATCGA+AGG 0.592251 4:-25780911 None:intergenic
CCAACCTAAAATGTTTAGAA+GGG 0.595141 4:-25780359 None:intergenic
TTATAGACAATCTGCGCATG+TGG 0.598997 4:-25780327 None:intergenic
TCGAATTTATAGGCTATGGA+AGG 0.602395 4:+25779037 MsG0480019722.01.T01:CDS
GGCTGACATCAAAAGGGGCA+GGG 0.603707 4:-25779061 None:intergenic
TAGGTACAAAGTCAAGGCGA+TGG 0.611746 4:+25780811 MsG0480019722.01.T01:intron
TTTGAAGGGAAGGTGGCCGA+GGG 0.616793 4:+25779402 MsG0480019722.01.T01:CDS
TCACACAAACCTTTAAGTGG+TGG 0.618123 4:-25778978 None:intergenic
AGCTCTTGCATGGTCAACGA+TGG 0.624188 4:+25779013 MsG0480019722.01.T01:CDS
CAATCCTCACATTCCCGAGG+TGG 0.627407 4:+25780221 MsG0480019722.01.T01:CDS
GTACAAAGTCAAGGCGATGG+TGG 0.628113 4:+25780814 MsG0480019722.01.T01:CDS
TGTTTGAGCTCAATGATGCT+AGG 0.640948 4:+25779824 MsG0480019722.01.T01:CDS
GATCCTGTAGACATCACCCT+CGG 0.656700 4:-25779418 None:intergenic
CTTAATGTATTCTCTCGCAG+TGG 0.659183 4:-25779776 None:intergenic
GCGAGAGAATACATTAAGGA+CGG 0.661892 4:+25779781 MsG0480019722.01.T01:CDS
AATCAATCCTCACATTCCCG+AGG 0.665728 4:+25780218 MsG0480019722.01.T01:CDS
AATTAGGCTGACATCAAAAG+GGG 0.667980 4:-25779066 None:intergenic
GCATCTGTTTGAAGGGAAGG+TGG 0.669076 4:+25779395 MsG0480019722.01.T01:CDS
CAGGATCGAAGGACACGTGT+CGG 0.671580 4:-25780900 None:intergenic
AGAAAACGATAACAAATGAG+GGG 0.688018 4:-25779553 None:intergenic
AAAGTGCTATGAATATCACC+AGG 0.688282 4:+25780190 MsG0480019722.01.T01:CDS
TATGTTCCAAGTGAACACAG+TGG 0.801513 4:+25779503 MsG0480019722.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTGAATGTGTATTGTT+TGG + Chr4:25779961-25779980 MsG0480019722.01.T01:CDS 20.0%
!! ATTAACTCAACAATAATAAC+TGG - Chr4:25779863-25779882 None:intergenic 20.0%
!! CACAAATAAAACAAACAATT+AGG - Chr4:25780117-25780136 None:intergenic 20.0%
!! TATATTTGTGTAGATGTTAT+TGG + Chr4:25779736-25779755 MsG0480019722.01.T01:intron 20.0%
!!! AATTGTTTGTTTTATTTGTG+TGG + Chr4:25780117-25780136 MsG0480019722.01.T01:intron 20.0%
! ACTATCTATCTTATTGATGA+AGG + Chr4:25780153-25780172 MsG0480019722.01.T01:intron 25.0%
! ATGAGTTAAATAACGTGAAA+AGG - Chr4:25779142-25779161 None:intergenic 25.0%
! CAATAAAAATGAAATCCATC+AGG - Chr4:25780722-25780741 None:intergenic 25.0%
! GAAGGATTAATGATTAAAGT+TGG + Chr4:25780776-25780795 MsG0480019722.01.T01:intron 25.0%
! GATCAATTGCAATCTTTAAT+TGG + Chr4:25779994-25780013 MsG0480019722.01.T01:CDS 25.0%
! GCAAAAATCAAAATATTCCA+AGG + Chr4:25780057-25780076 MsG0480019722.01.T01:CDS 25.0%
! TAAATGCTACAATCGAATAT+GGG + Chr4:25780532-25780551 MsG0480019722.01.T01:intron 25.0%
! TACTGGAAATGTTAAATCAA+TGG - Chr4:25779230-25779249 None:intergenic 25.0%
! TAGAAAACGATAACAAATGA+GGG - Chr4:25779557-25779576 None:intergenic 25.0%
! TGAGTTAAATAACGTGAAAA+GGG - Chr4:25779141-25779160 None:intergenic 25.0%
! TTTCACGTTATTTAACTCAT+TGG + Chr4:25779142-25779161 MsG0480019722.01.T01:intron 25.0%
!! AAGTTGGAATATGCAATTTT+AGG + Chr4:25780792-25780811 MsG0480019722.01.T01:intron 25.0%
!! ATCCTTTATTTGTTCAGATT+AGG + Chr4:25780399-25780418 MsG0480019722.01.T01:CDS 25.0%
AACAAAACAACCAAACTCAA+AGG - Chr4:25779257-25779276 None:intergenic 30.0%
AACATAAGTTTGTAGGAATG+AGG - Chr4:25779489-25779508 None:intergenic 30.0%
ACAAAACAACCAAACTCAAA+GGG - Chr4:25779256-25779275 None:intergenic 30.0%
AGAAAACGATAACAAATGAG+GGG - Chr4:25779556-25779575 None:intergenic 30.0%
AGGATTCTTAGGTCAAAAAT+TGG - Chr4:25780869-25780888 None:intergenic 30.0%
ATACCTGTTTAGTAGTGTTT+GGG + Chr4:25780744-25780763 MsG0480019722.01.T01:intron 30.0%
ATATGATCCATGTGGAATAA+GGG + Chr4:25779336-25779355 MsG0480019722.01.T01:intron 30.0%
CCAACCTAAAATGTTTAGAA+GGG - Chr4:25780362-25780381 None:intergenic 30.0%
CTAAAATGTTTAGAAGGGAA+AGG - Chr4:25780357-25780376 None:intergenic 30.0%
CTAAATGCTACAATCGAATA+TGG + Chr4:25780531-25780550 MsG0480019722.01.T01:intron 30.0%
CTAGAAAACGATAACAAATG+AGG - Chr4:25779558-25779577 None:intergenic 30.0%
GAAGTAACTCAAATCTTTGT+TGG - Chr4:25780438-25780457 None:intergenic 30.0%
GACCTAATCTGAACAAATAA+AGG - Chr4:25780404-25780423 None:intergenic 30.0%
GATTCTTAGGTCAAAAATTG+GGG - Chr4:25780867-25780886 None:intergenic 30.0%
GGATTCTTAGGTCAAAAATT+GGG - Chr4:25780868-25780887 None:intergenic 30.0%
TAAATCAATGGCAAATTGCA+TGG - Chr4:25779218-25779237 None:intergenic 30.0%
TACACATTCAAATTTACCAC+TGG - Chr4:25779956-25779975 None:intergenic 30.0%
TATACCTGTTTAGTAGTGTT+TGG + Chr4:25780743-25780762 MsG0480019722.01.T01:intron 30.0%
TATATGATCCATGTGGAATA+AGG + Chr4:25779335-25779354 MsG0480019722.01.T01:intron 30.0%
TGTATGAATGTAGGATTCTT+AGG - Chr4:25780880-25780899 None:intergenic 30.0%
TTCTATGTTATTCCAGCAAA+TGG + Chr4:25779447-25779466 MsG0480019722.01.T01:CDS 30.0%
! AAGATTTGAGTTACTTCGAT+CGG + Chr4:25780441-25780460 MsG0480019722.01.T01:intron 30.0%
! ATGTTTTTCATATTGTTCCG+AGG + Chr4:25780682-25780701 MsG0480019722.01.T01:CDS 30.0%
! CTTTCCCTTCTAAACATTTT+AGG + Chr4:25780355-25780374 MsG0480019722.01.T01:CDS 30.0%
! GAGCTCAAACATACATATTT+TGG - Chr4:25779815-25779834 None:intergenic 30.0%
!! CAATTTTAGGTACAAAGTCA+AGG + Chr4:25780805-25780824 MsG0480019722.01.T01:intron 30.0%
!!! AATGGTTTTTGTTGATGACA+AGG + Chr4:25779100-25779119 MsG0480019722.01.T01:CDS 30.0%
!!! TCTTATTTGTTGTTTTCCAG+TGG + Chr4:25779937-25779956 MsG0480019722.01.T01:intron 30.0%
!!! TGAGTTTGGTTGTTTTGTTT+CGG + Chr4:25779258-25779277 MsG0480019722.01.T01:intron 30.0%
!!! TTTTTTAAATTCCTCCACCT+CGG - Chr4:25780238-25780257 None:intergenic 30.0%
AAAAGTCTTAGAGAGAAGTC+TGG - Chr4:25779183-25779202 None:intergenic 35.0%
AATTAGGCTGACATCAAAAG+GGG - Chr4:25779069-25779088 None:intergenic 35.0%
ACATCACACAAACCTTTAAG+TGG - Chr4:25778984-25779003 None:intergenic 35.0%
CAAAACAACCAAACTCAAAG+GGG - Chr4:25779255-25779274 None:intergenic 35.0%
CAACGATGGTTCGAATTTAT+AGG + Chr4:25779027-25779046 MsG0480019722.01.T01:CDS 35.0%
CAATTAGGCTGACATCAAAA+GGG - Chr4:25779070-25779089 None:intergenic 35.0%
CACTTGGAACATAAGTTTGT+AGG - Chr4:25779496-25779515 None:intergenic 35.0%
CCTAATTGAGTCACTAGAAA+TGG + Chr4:25779082-25779101 MsG0480019722.01.T01:CDS 35.0%
CTGCTAATATATGATCCATG+TGG + Chr4:25779328-25779347 MsG0480019722.01.T01:intron 35.0%
CTTGAACATGACTTCTTAGT+TGG + Chr4:25779603-25779622 MsG0480019722.01.T01:CDS 35.0%
GATGTTATTGGATTTCTCAC+TGG + Chr4:25779748-25779767 MsG0480019722.01.T01:intron 35.0%
GCCAACCTAAAATGTTTAGA+AGG - Chr4:25780363-25780382 None:intergenic 35.0%
TATGAGTATAATGCTCACCT+TGG - Chr4:25780077-25780096 None:intergenic 35.0%
TATTGATGAAGGATATCCCT+TGG + Chr4:25780164-25780183 MsG0480019722.01.T01:intron 35.0%
TCAATGATGCTAGGTGATTT+CGG + Chr4:25779833-25779852 MsG0480019722.01.T01:intron 35.0%
TCAATTAGGCTGACATCAAA+AGG - Chr4:25779071-25779090 None:intergenic 35.0%
TCGAATTTATAGGCTATGGA+AGG + Chr4:25779037-25779056 MsG0480019722.01.T01:CDS 35.0%
TGAAAAATCTGAGAATGCTC+TGG + Chr4:25779527-25779546 MsG0480019722.01.T01:CDS 35.0%
TGCTGTAACTCTTGATCTTT+GGG - Chr4:25780467-25780486 None:intergenic 35.0%
TGGTGATATTCATAGCACTT+TGG - Chr4:25780191-25780210 None:intergenic 35.0%
TGGTTCGAATTTATAGGCTA+TGG + Chr4:25779033-25779052 MsG0480019722.01.T01:CDS 35.0%
TTAATTGGAAAGCCTGTTGA+AGG + Chr4:25780009-25780028 MsG0480019722.01.T01:CDS 35.0%
TTTACAACCCTTATTCCACA+TGG - Chr4:25779346-25779365 None:intergenic 35.0%
TTTCATATTGTTCCGAGGTT+AGG + Chr4:25780687-25780706 MsG0480019722.01.T01:intron 35.0%
! AAAGTGCTATGAATATCACC+AGG + Chr4:25780190-25780209 MsG0480019722.01.T01:CDS 35.0%
! TTTTTAAATTCCTCCACCTC+GGG - Chr4:25780237-25780256 None:intergenic 35.0%
!! CCATTTCTAGTGACTCAATT+AGG - Chr4:25779085-25779104 None:intergenic 35.0%
!! CCCTTCTAAACATTTTAGGT+TGG + Chr4:25780359-25780378 MsG0480019722.01.T01:CDS 35.0%
AAACAGATGCAGCAACTCTT+TGG - Chr4:25779385-25779404 None:intergenic 40.0%
AACAGATGCAGCAACTCTTT+GGG - Chr4:25779384-25779403 None:intergenic 40.0%
AGGAACAAAACACCTAACCT+CGG - Chr4:25780702-25780721 None:intergenic 40.0%
AGTTGCTGCATCTGTTTGAA+GGG + Chr4:25779388-25779407 MsG0480019722.01.T01:CDS 40.0%
ATTCATAGCACTTTGGACCA+AGG - Chr4:25780184-25780203 None:intergenic 40.0%
CAATTAGGCAGAATATGTCG+AGG - Chr4:25780102-25780121 None:intergenic 40.0%
CACTGCGAGAGAATACATTA+AGG + Chr4:25779777-25779796 MsG0480019722.01.T01:CDS 40.0%
CTAAGAAGTCATGTTCAAGC+TGG - Chr4:25779602-25779621 None:intergenic 40.0%
CTGCTGTAACTCTTGATCTT+TGG - Chr4:25780468-25780487 None:intergenic 40.0%
CTTAATGTATTCTCTCGCAG+TGG - Chr4:25779779-25779798 None:intergenic 40.0%
GAACCCAAACACTACTAAAC+AGG - Chr4:25780750-25780769 None:intergenic 40.0%
GCAAACTCAATTACAACCAC+TGG - Chr4:25780039-25780058 None:intergenic 40.0%
GCACATCTCTTGCACATATA+CGG - Chr4:25780657-25780676 None:intergenic 40.0%
GCGAGAGAATACATTAAGGA+CGG + Chr4:25779781-25779800 MsG0480019722.01.T01:CDS 40.0%
GTCAAAAATTGGGGTATGAC+AGG - Chr4:25780858-25780877 None:intergenic 40.0%
GTGAGGATTGATTGAAATCC+TGG - Chr4:25780211-25780230 None:intergenic 40.0%
TATGTTCCAAGTGAACACAG+TGG + Chr4:25779503-25779522 MsG0480019722.01.T01:CDS 40.0%
TCACACAAACCTTTAAGTGG+TGG - Chr4:25778981-25779000 None:intergenic 40.0%
TGTTTGAGCTCAATGATGCT+AGG + Chr4:25779824-25779843 MsG0480019722.01.T01:CDS 40.0%
TTATAGACAATCTGCGCATG+TGG - Chr4:25780330-25780349 None:intergenic 40.0%
TTCATAGCACTTTGGACCAA+GGG - Chr4:25780183-25780202 None:intergenic 40.0%
TTCCAGCAAATGGACAATAC+AGG + Chr4:25779457-25779476 MsG0480019722.01.T01:CDS 40.0%
TTTCAACCACTGTGTTCACT+TGG - Chr4:25779512-25779531 None:intergenic 40.0%
! AGCTCAGCTACTGTTTTCTT+TGG - Chr4:25780513-25780532 None:intergenic 40.0%
!! GTTAGGTGTTTTGTTCCTGA+TGG + Chr4:25780704-25780723 MsG0480019722.01.T01:intron 40.0%
AATCAATCCTCACATTCCCG+AGG + Chr4:25780218-25780237 MsG0480019722.01.T01:CDS 45.0%
ACCACTGGAAAACCTTCAAC+AGG - Chr4:25780024-25780043 None:intergenic 45.0%
CAGAGATTGATCAGGATCGA+AGG - Chr4:25780914-25780933 None:intergenic 45.0%
GAGTTGCTGCATCTGTTTGA+AGG + Chr4:25779387-25779406 MsG0480019722.01.T01:CDS 45.0%
GGTTTGTGTGATGTTGTTCC+TGG + Chr4:25778990-25779009 MsG0480019722.01.T01:CDS 45.0%
GTCCTGTATTGTCCATTTGC+TGG - Chr4:25779462-25779481 None:intergenic 45.0%
GTGTGTCACAAGTTGTTGTC+TGG + Chr4:25780621-25780640 MsG0480019722.01.T01:CDS 45.0%
TAGGTACAAAGTCAAGGCGA+TGG + Chr4:25780811-25780830 MsG0480019722.01.T01:intron 45.0%
! AATCGAATATGGGTTGTGCG+TGG + Chr4:25780542-25780561 MsG0480019722.01.T01:intron 45.0%
! ACGTGTCGGTGTATGAATGT+AGG - Chr4:25780889-25780908 None:intergenic 45.0%
AGCTCTTGCATGGTCAACGA+TGG + Chr4:25779013-25779032 MsG0480019722.01.T01:CDS 50.0%
AGCTGGCAACGACGAATTTC+AGG - Chr4:25779585-25779604 None:intergenic 50.0%
CGTTTGGTAGGTTGTGCTGA+AGG + Chr4:25780573-25780592 MsG0480019722.01.T01:intron 50.0%
GATCCTGTAGACATCACCCT+CGG - Chr4:25779421-25779440 None:intergenic 50.0%
GCATCTGTTTGAAGGGAAGG+TGG + Chr4:25779395-25779414 MsG0480019722.01.T01:CDS 50.0%
GCTGCATCTGTTTGAAGGGA+AGG + Chr4:25779392-25779411 MsG0480019722.01.T01:CDS 50.0%
GTACAAAGTCAAGGCGATGG+TGG + Chr4:25780814-25780833 MsG0480019722.01.T01:CDS 50.0%
GTGGTTCATGCACGTTTGGT+AGG + Chr4:25780561-25780580 MsG0480019722.01.T01:intron 50.0%
GTTGTGCTGAAGGTGAGGAT+TGG + Chr4:25780583-25780602 MsG0480019722.01.T01:CDS 50.0%
TTGTTCCTGGAGCTCTTGCA+TGG + Chr4:25779003-25779022 MsG0480019722.01.T01:CDS 50.0%
! GCCTGTTGAAGGTTTTCCAG+TGG + Chr4:25780020-25780039 MsG0480019722.01.T01:CDS 50.0%
! GTGTTTGGGTTCGCTCAAGA+AGG + Chr4:25780758-25780777 MsG0480019722.01.T01:intron 50.0%
!! TCAAGGCGATGGTGGATGAT+GGG + Chr4:25780822-25780841 MsG0480019722.01.T01:CDS 50.0%
AGGCTGACATCAAAAGGGGC+AGG - Chr4:25779065-25779084 None:intergenic 55.0%
CAATCCTCACATTCCCGAGG+TGG + Chr4:25780221-25780240 MsG0480019722.01.T01:CDS 55.0%
CAGGATCGAAGGACACGTGT+CGG - Chr4:25780903-25780922 None:intergenic 55.0%
GGCTGACATCAAAAGGGGCA+GGG - Chr4:25779064-25779083 None:intergenic 55.0%
GGTAGGTTGTGCTGAAGGTG+AGG + Chr4:25780578-25780597 MsG0480019722.01.T01:intron 55.0%
GTGCGTGGTTCATGCACGTT+TGG + Chr4:25780557-25780576 MsG0480019722.01.T01:intron 55.0%
GTGCTGAAGGTGAGGATTGG+TGG + Chr4:25780586-25780605 MsG0480019722.01.T01:CDS 55.0%
GTTGACCATGCAAGAGCTCC+AGG - Chr4:25779011-25779030 None:intergenic 55.0%
TTTGAAGGGAAGGTGGCCGA+GGG + Chr4:25779402-25779421 MsG0480019722.01.T01:CDS 55.0%
! CCAAACTCAAAGGGGCGTAC+TGG - Chr4:25779247-25779266 None:intergenic 55.0%
! CCAGTACGCCCCTTTGAGTT+TGG + Chr4:25779244-25779263 MsG0480019722.01.T01:intron 55.0%
!! GTCAAGGCGATGGTGGATGA+TGG + Chr4:25780821-25780840 MsG0480019722.01.T01:CDS 55.0%
GTTTGAAGGGAAGGTGGCCG+AGG + Chr4:25779401-25779420 MsG0480019722.01.T01:CDS 60.0%
TCCTCACATTCCCGAGGTGG+AGG + Chr4:25780224-25780243 MsG0480019722.01.T01:CDS 60.0%
TCCTCCACCTCGGGAATGTG+AGG - Chr4:25780228-25780247 None:intergenic 60.0%
TGGCCGAGGGTGATGTCTAC+AGG + Chr4:25779415-25779434 MsG0480019722.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 25778972 25780934 25778972 ID=MsG0480019722.01;Name=MsG0480019722.01
Chr4 mRNA 25778972 25780934 25778972 ID=MsG0480019722.01.T01;Parent=MsG0480019722.01;Name=MsG0480019722.01.T01;_AED=0.57;_eAED=0.66;_QI=0|0|0|0.85|1|1|7|0|374
Chr4 exon 25778972 25779121 25778972 ID=MsG0480019722.01.T01:exon:4698;Parent=MsG0480019722.01.T01
Chr4 exon 25779357 25779624 25779357 ID=MsG0480019722.01.T01:exon:4699;Parent=MsG0480019722.01.T01
Chr4 exon 25779749 25779845 25779749 ID=MsG0480019722.01.T01:exon:4700;Parent=MsG0480019722.01.T01
Chr4 exon 25779957 25780078 25779957 ID=MsG0480019722.01.T01:exon:4701;Parent=MsG0480019722.01.T01
Chr4 exon 25780175 25780420 25780175 ID=MsG0480019722.01.T01:exon:4702;Parent=MsG0480019722.01.T01
Chr4 exon 25780583 25780703 25780583 ID=MsG0480019722.01.T01:exon:4703;Parent=MsG0480019722.01.T01
Chr4 exon 25780814 25780934 25780814 ID=MsG0480019722.01.T01:exon:4704;Parent=MsG0480019722.01.T01
Chr4 CDS 25778972 25779121 25778972 ID=MsG0480019722.01.T01:cds;Parent=MsG0480019722.01.T01
Chr4 CDS 25779357 25779624 25779357 ID=MsG0480019722.01.T01:cds;Parent=MsG0480019722.01.T01
Chr4 CDS 25779749 25779845 25779749 ID=MsG0480019722.01.T01:cds;Parent=MsG0480019722.01.T01
Chr4 CDS 25779957 25780078 25779957 ID=MsG0480019722.01.T01:cds;Parent=MsG0480019722.01.T01
Chr4 CDS 25780175 25780420 25780175 ID=MsG0480019722.01.T01:cds;Parent=MsG0480019722.01.T01
Chr4 CDS 25780583 25780703 25780583 ID=MsG0480019722.01.T01:cds;Parent=MsG0480019722.01.T01
Chr4 CDS 25780814 25780934 25780814 ID=MsG0480019722.01.T01:cds;Parent=MsG0480019722.01.T01
Gene Sequence

>MsG0480019722.01.T01

ATGGATCCACCACTTAAAGGTTTGTGTGATGTTGTTCCTGGAGCTCTTGCATGGTCAACGATGGTTCGAATTTATAGGCTATGGAAGGTCCCTGCCCCTTTTGATGTCAGCCTAATTGAGTCACTAGAAATGGTTTTTGTTGATGACAAGGGTTGTAAAATTCATGCAACTGTACCCAAAGAGTTGCTGCATCTGTTTGAAGGGAAGGTGGCCGAGGGTGATGTCTACAGGATCTTCAACTTCTATGTTATTCCAGCAAATGGACAATACAGGACAACACCTCATTCCTACAAACTTATGTTCCAAGTGAACACAGTGGTTGAAAAATCTGAGAATGCTCTGGTCACCCCTCATTTGTTATCGTTTTCTAGATCACCTGAAATTCGTCGTTGCCAGCTTGAACATGACTTCTTAGTTGATGTTATTGGATTTCTCACTGGTATTTCCACTGCGAGAGAATACATTAAGGACGGTAAAATCACCAAAATATGTATGTTTGAGCTCAATGATGCTAGTGGTAAATTTGAATGTGTATTGTTTGGTGAATATGTTGATCAATTGCAATCTTTAATTGGAAAGCCTGTTGAAGGTTTTCCAGTGGTTGTAATTGAGTTTGCAAAAATCAAAATATTCCAAGGATATCCCTTGGTCCAAAGTGCTATGAATATCACCAGGATTTCAATCAATCCTCACATTCCCGAGGTGGAGGAATTTAAAAAAGAGTATGTTAAATTTTGTTTCTCTAACTTTGTTACTATCGAGTGCTTATTGCATGAGAATGTTTTTTTGCCACATGCGCAGATTGTCTATAAGATGCCTTTCCCTTCTAAACATTTTAGGTTGGCGCAAATGTTTGAATTCATCCTTTATTTGTTCAGATTAGGTTGTGCTGAAGGTGAGGATTGGTGGTATGCATCTTGTGTGTGTCACAAGTTGTTGTCTGGTGATTCGAGTCCGTATATGTGCAAGAGATGTGCTAAATATGTTTTTCATATTGTTCCGAGGTACAAAGTCAAGGCGATGGTGGATGATGGGACTGATGATGCCTGTCATACCCCAATTTTTGACCTAAGAATCCTACATTCATACACCGACACGTGTCCTTCGATCCTGATCAATCTCTGA
Protein sequence

>MsG0480019722.01.T01

MDPPLKGLCDVVPGALAWSTMVRIYRLWKVPAPFDVSLIESLEMVFVDDKGCKIHATVPKELLHLFEGKVAEGDVYRIFNFYVIPANGQYRTTPHSYKLMFQVNTVVEKSENALVTPHLLSFSRSPEIRRCQLEHDFLVDVIGFLTGISTAREYIKDGKITKICMFELNDASGKFECVLFGEYVDQLQSLIGKPVEGFPVVVIEFAKIKIFQGYPLVQSAMNITRISINPHIPEVEEFKKEYVKFCFSNFVTIECLLHENVFLPHAQIVYKMPFPSKHFRLAQMFEFILYLFRLGCAEGEDWWYASCVCHKLLSGDSSPYMCKRCAKYVFHIVPRYKVKAMVDDGTDDACHTPIFDLRILHSYTDTCPSILINL*