AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020442.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020442.01.T01 MTR_4g051575 95.905 464 16 1 1 461 1 464 0.0 916
MsG0480020442.01.T01 MTR_4g051575 95.122 328 12 2 137 461 4 330 0.0 614
MsG0480020442.01.T01 MTR_2g087288 48.359 457 223 5 6 456 2 451 2.41e-154 446
MsG0480020442.01.T01 MTR_7g106260 50.220 454 218 4 10 459 11 460 1.04e-151 440
MsG0480020442.01.T01 MTR_2g087285 48.946 427 203 5 1 420 1 419 3.20e-142 415
MsG0480020442.01.T01 MTR_1g077670 44.608 408 202 5 35 420 43 448 4.17e-115 347
MsG0480020442.01.T01 MTR_1g077660 45.885 401 190 6 35 411 37 434 5.33e-115 346
MsG0480020442.01.T01 MTR_1g115140 41.713 362 190 4 20 375 27 373 3.31e-89 282
MsG0480020442.01.T01 MTR_1g115175 41.713 362 198 4 20 376 23 376 2.93e-88 279
MsG0480020442.01.T01 MTR_4g098570 41.484 364 206 3 19 376 27 389 3.16e-87 276
MsG0480020442.01.T01 MTR_5g014310 39.948 383 221 5 2 376 17 398 4.20e-87 276
MsG0480020442.01.T01 MTR_7g094770 37.275 389 239 3 37 420 51 439 1.57e-86 272
MsG0480020442.01.T01 MTR_1g115190 40.496 363 202 4 20 376 24 378 7.80e-79 255
MsG0480020442.01.T01 MTR_4g098610 40.327 367 209 5 18 376 25 389 1.75e-78 254
MsG0480020442.01.T01 MTR_8g104130 32.927 328 212 6 29 352 47 370 2.04e-58 202
MsG0480020442.01.T01 MTR_8g104110 31.965 341 215 7 27 352 49 387 2.66e-57 199
MsG0480020442.01.T01 MTR_1g111250 32.822 326 204 5 41 354 74 396 3.25e-56 195
MsG0480020442.01.T01 MTR_6g084680 31.233 365 234 6 4 352 44 407 5.15e-55 193
MsG0480020442.01.T01 MTR_8g104120 32.615 325 203 6 41 352 60 381 3.94e-50 179
MsG0480020442.01.T01 MTR_0710s0020 47.904 167 80 1 20 186 24 183 5.37e-39 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020442.01.T01 AT2G27240 54.462 437 191 4 29 459 1 435 5.66e-170 487
MsG0480020442.01.T01 AT1G08440 57.614 394 161 2 29 416 1 394 3.44e-169 486
MsG0480020442.01.T01 AT2G27240 51.620 463 190 3 29 459 1 461 6.52e-167 480
MsG0480020442.01.T01 AT1G08430 50.682 440 207 4 29 459 1 439 5.88e-155 449
MsG0480020442.01.T01 AT3G11680 49.561 456 213 8 18 459 15 467 2.70e-143 419
MsG0480020442.01.T01 AT3G11680 49.561 456 213 8 18 459 13 465 2.73e-143 419
MsG0480020442.01.T01 AT4G00910 40.363 441 233 4 26 437 43 482 5.77e-113 342
MsG0480020442.01.T01 AT4G17970 41.551 361 196 3 19 376 28 376 6.46e-90 284
MsG0480020442.01.T01 AT5G46610 40.336 357 202 3 28 376 28 381 1.49e-87 278
MsG0480020442.01.T01 AT5G46600 41.061 358 201 3 28 376 29 385 2.29e-87 277
MsG0480020442.01.T01 AT5G46610 36.695 357 191 4 28 376 28 357 1.57e-73 240
MsG0480020442.01.T01 AT5G46610 34.454 357 176 4 28 376 28 334 5.33e-66 220
MsG0480020442.01.T01 AT3G18440 33.333 330 206 5 35 352 73 400 1.35e-61 211
MsG0480020442.01.T01 AT1G18420 31.198 359 230 7 28 372 70 425 2.81e-56 196
MsG0480020442.01.T01 AT1G18420 31.965 341 215 7 46 372 5 342 3.25e-56 194
MsG0480020442.01.T01 AT1G68600 32.615 325 205 5 42 354 49 371 2.05e-55 193
MsG0480020442.01.T01 AT2G17470 31.765 340 212 8 24 350 18 350 2.39e-55 193
MsG0480020442.01.T01 AT1G25480 32.378 349 221 6 41 377 59 404 3.84e-55 192
MsG0480020442.01.T01 AT2G17470 31.765 340 212 8 24 350 40 372 4.26e-55 192
MsG0480020442.01.T01 AT4G17585 45.161 62 34 0 30 91 28 89 1.22e-11 63.2

Find 70 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGCTTCAATCAAGTTTA+TGG 0.032989 4:+41410879 MsG0480020442.01.T01:CDS
CATTACTTGGCTAGCTTATC+TGG 0.169349 4:+41409149 MsG0480020442.01.T01:CDS
CAACCACTTTATGAAAATTT+TGG 0.182547 4:+41408314 MsG0480020442.01.T01:CDS
TGGTTCCCATCTTGCAAAAT+TGG 0.218158 4:-41410245 None:intergenic
TGGAATCAATACCTTAAAAT+TGG 0.229282 4:+41410298 MsG0480020442.01.T01:CDS
TTCTCTTTAATATCTGTATC+TGG 0.259432 4:+41409404 MsG0480020442.01.T01:CDS
GTGAAATCAAGATATGATTA+TGG 0.273521 4:+41409359 MsG0480020442.01.T01:CDS
ACAGGGGAACCAATTCTAAT+TGG 0.279623 4:+41409176 MsG0480020442.01.T01:CDS
ACATTTCTGTGCATAGTTCT+TGG 0.282571 4:-41410739 None:intergenic
TCATATCTTGATTTCACTTT+GGG 0.284806 4:-41409353 None:intergenic
GCTTTCTCTTGGTCCATGTT+TGG 0.290756 4:-41408116 None:intergenic
GGAGATTGTGACACTTCTTT+AGG 0.293984 4:-41411052 None:intergenic
TCCAGTTGAGATTCAGCTTC+TGG 0.305173 4:-41412481 None:intergenic
ACATTGGTAGCTGGTGCTTT+AGG 0.317161 4:+41409116 MsG0480020442.01.T01:CDS
AGTTGGACTTGCAATCTCTT+TGG 0.318396 4:+41408271 MsG0480020442.01.T01:CDS
TAGCTGGTGCTTTAGGTGTT+GGG 0.321949 4:+41409123 MsG0480020442.01.T01:CDS
GCGTTCGCAACGTGAGTTTC+CGG 0.336235 4:-41410830 None:intergenic
ACATGTGAGTTCTCAATCTT+AGG 0.357707 4:-41411100 None:intergenic
AGGTGTTGGGGCTCATTACT+TGG 0.372554 4:+41409136 MsG0480020442.01.T01:CDS
ACAAAGAATCCAATTAGAAT+TGG 0.373993 4:-41409185 None:intergenic
CTTTAGGAAAAGGTTTGAAT+AGG 0.382546 4:+41409084 MsG0480020442.01.T01:CDS
TTGATTGAAGCAACGAGTTA+AGG 0.386024 4:-41410871 None:intergenic
ACCAGAAGCTGAATCTCAAC+TGG 0.388839 4:+41412480 MsG0480020442.01.T01:three_prime_UTR
ACCTTCTTCATAAGAACCTT+TGG 0.391062 4:-41408179 None:intergenic
ATCATATCTTGATTTCACTT+TGG 0.405404 4:-41409354 None:intergenic
ATACTTGGTAGCTTCTTAGA+AGG 0.413754 4:+41409575 MsG0480020442.01.T01:CDS
TGAAATCAAGATATGATTAT+GGG 0.418681 4:+41409360 MsG0480020442.01.T01:CDS
TCCAAAGGTTCTTATGAAGA+AGG 0.419353 4:+41408178 MsG0480020442.01.T01:CDS
GTAGCTGGTGCTTTAGGTGT+TGG 0.424814 4:+41409122 MsG0480020442.01.T01:CDS
TTAGGAGCTACTTTAGGAAA+AGG 0.426037 4:+41409074 MsG0480020442.01.T01:intron
AGTTCAAATTTCGTCACCCT+TGG 0.430578 4:+41410278 MsG0480020442.01.T01:CDS
CATGTGTACTAGTTAGAGTA+TGG 0.433301 4:+41408138 MsG0480020442.01.T01:CDS
GTGATTCATTCACTAAAAGT+TGG 0.434830 4:+41408254 MsG0480020442.01.T01:CDS
GCTAGCTTATCTGGAGAGAC+AGG 0.435266 4:+41409158 MsG0480020442.01.T01:CDS
GAGTTCTCAATCTTAGGATC+TGG 0.455186 4:-41411094 None:intergenic
GCTATCAAGTTGGAAATACT+TGG 0.466925 4:+41409560 MsG0480020442.01.T01:CDS
AAACACAAACAAAGGATTAG+TGG 0.468328 4:+41412563 MsG0480020442.01.T01:three_prime_UTR
AACTCTTCACCAGCCCAAAC+AGG 0.473547 4:-41409524 None:intergenic
CTAGTACACATGCTTTCTCT+TGG 0.478160 4:-41408127 None:intergenic
TGATGATGAAGTATTACAAA+TGG 0.486318 4:+41409433 MsG0480020442.01.T01:CDS
AGCTGGTGCTTTAGGTGTTG+GGG 0.490031 4:+41409124 MsG0480020442.01.T01:CDS
TTTGTTTGTCCTGTTTGGGC+TGG 0.492028 4:+41409515 MsG0480020442.01.T01:CDS
ATATCGAATGGAAGCTCTAA+AGG 0.501202 4:+41410342 MsG0480020442.01.T01:CDS
GGCAGTGATGACTGTGGTGG+TGG 0.502115 4:+41408352 MsG0480020442.01.T01:CDS
TATTACAAATGGCTCATAAG+AGG 0.504629 4:+41409444 MsG0480020442.01.T01:CDS
TCAATGCAAAAGCTGTCCAT+TGG 0.511243 4:+41412534 MsG0480020442.01.T01:three_prime_UTR
GGATTCTTTGTATTTCTACA+AGG 0.514172 4:+41409197 MsG0480020442.01.T01:CDS
CAATATGGTGTCTCCAAACA+TGG 0.518606 4:+41408103 None:intergenic
TAAAAGCAATGATGAGTCAC+TGG 0.520604 4:+41410124 MsG0480020442.01.T01:CDS
AATTTGAACTTGCCATGACC+TGG 0.528501 4:-41410265 None:intergenic
TGACTCAATTGCTATCAAGT+TGG 0.535480 4:+41409550 MsG0480020442.01.T01:CDS
AATGAAGCAACTGTCGCAGC+TGG 0.536056 4:-41410929 None:intergenic
GAATAGGACAATGGCAACAT+TGG 0.537381 4:+41409100 MsG0480020442.01.T01:CDS
GCAAGATGGGAACCAGGTCA+TGG 0.553785 4:+41410253 MsG0480020442.01.T01:CDS
GGTTCAGCACATTCACATGT+TGG 0.558533 4:-41411073 None:intergenic
ACAATGGCAACATTGGTAGC+TGG 0.571785 4:+41409107 MsG0480020442.01.T01:CDS
TCGTCAATGTGCATATCGAA+TGG 0.577376 4:+41410330 MsG0480020442.01.T01:CDS
GGATTCGAAAACACAAACAA+AGG 0.593237 4:+41412555 MsG0480020442.01.T01:three_prime_UTR
CTAGCTTATCTGGAGAGACA+GGG 0.601883 4:+41409159 MsG0480020442.01.T01:CDS
AAAAGGTTTGAATAGGACAA+TGG 0.617027 4:+41409091 MsG0480020442.01.T01:CDS
AATGACAAGAAAGTCATCAC+CGG 0.619784 4:+41410811 MsG0480020442.01.T01:CDS
TGACGCAGCTTCTGATGATG+TGG 0.628327 4:-41412404 None:intergenic
TAGCTTATCTGGAGAGACAG+GGG 0.659742 4:+41409160 MsG0480020442.01.T01:CDS
TGAGTACTTCGAAACAACAA+AGG 0.669928 4:+41410043 MsG0480020442.01.T01:CDS
GTGGGCAGTGATGACTGTGG+TGG 0.678035 4:+41408349 MsG0480020442.01.T01:CDS
TGGTGAAATAGCTTCTGATG+AGG 0.681327 4:-41412461 None:intergenic
AATGTGCTTAGAATCAAGCA+TGG 0.692895 4:+41410757 MsG0480020442.01.T01:CDS
TAAGATTGAGAACTCACATG+TGG 0.703897 4:+41411102 MsG0480020442.01.T01:CDS
TGATATTGTTGATTGCACTG+AGG 0.767820 4:+41410958 MsG0480020442.01.T01:CDS
AATGTGGGCAGTGATGACTG+TGG 0.817988 4:+41408346 MsG0480020442.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAATAAATATTTTTTA+TGG - Chr4:41408595-41408614 None:intergenic 0.0%
!!! ATATGTGAAAATTTTATTTA+TGG + Chr4:41410183-41410202 MsG0480020442.01.T01:intron 10.0%
!!! TATAAAAAGTATATTTCATT+TGG + Chr4:41408615-41408634 MsG0480020442.01.T01:intron 10.0%
!!! TATATCAATTTATTTTTTGA+GGG - Chr4:41408830-41408849 None:intergenic 10.0%
!!! TCTTTATTATAACATTTTTT+TGG - Chr4:41409241-41409260 None:intergenic 10.0%
!!! TTATATCAATTTATTTTTTG+AGG - Chr4:41408831-41408850 None:intergenic 10.0%
!!! TTTTATCTTTACTTTATTAT+AGG + Chr4:41410222-41410241 MsG0480020442.01.T01:intron 10.0%
!! AAAAAAATAAAAGAGAACTA+AGG + Chr4:41408716-41408735 MsG0480020442.01.T01:intron 15.0%
!! AATAAAAAAAAATACCATGT+TGG + Chr4:41411232-41411251 MsG0480020442.01.T01:intron 15.0%
!! ACAAAATGTTACTAATTATT+AGG - Chr4:41411263-41411282 None:intergenic 15.0%
!! AGGTATTAAAAATTGTAAAT+TGG + Chr4:41412168-41412187 MsG0480020442.01.T01:intron 15.0%
!! AGTAATACTACTTATATAAT+TGG + Chr4:41411642-41411661 MsG0480020442.01.T01:intron 15.0%
!! CAAAATGTTACTAATTATTA+GGG - Chr4:41411262-41411281 None:intergenic 15.0%
!! TAAATAAGGATATATAATAG+TGG - Chr4:41409788-41409807 None:intergenic 15.0%
!! TAGATGAAATTCAATAAATA+AGG - Chr4:41409802-41409821 None:intergenic 15.0%
!! TTCAAAATAATTATCGTTTA+AGG - Chr4:41409933-41409952 None:intergenic 15.0%
!!! AAATGCATATTTTAGATTTA+TGG - Chr4:41410405-41410424 None:intergenic 15.0%
!!! ATATAATATGTCACATTTTT+AGG + Chr4:41409056-41409075 MsG0480020442.01.T01:intron 15.0%
!!! ATTTTTTATGGAAAACAAAA+GGG - Chr4:41408583-41408602 None:intergenic 15.0%
!!! TACGATTAATAAAAGTATTT+TGG + Chr4:41409841-41409860 MsG0480020442.01.T01:intron 15.0%
!!! TATTTTTTATGGAAAACAAA+AGG - Chr4:41408584-41408603 None:intergenic 15.0%
!!! TTGTTTATAGACATAATTTT+TGG - Chr4:41409656-41409675 None:intergenic 15.0%
!!! TTTATTTTAATTCCATTATG+TGG + Chr4:41411313-41411332 MsG0480020442.01.T01:intron 15.0%
!! ATGATGTGACTTTATAATTA+TGG - Chr4:41412224-41412243 None:intergenic 20.0%
!! CGAAGATCTAAATTTAATTA+GGG - Chr4:41410618-41410637 None:intergenic 20.0%
!! TGAAATCAAGATATGATTAT+GGG + Chr4:41409360-41409379 MsG0480020442.01.T01:CDS 20.0%
!!! AAAAGACAATTATTTTGAGA+CGG - Chr4:41409697-41409716 None:intergenic 20.0%
!!! AAACGATAATTATTTTGAAG+TGG + Chr4:41409934-41409953 MsG0480020442.01.T01:intron 20.0%
!!! AATTCACGAGTTTTTAATTA+AGG - Chr4:41411753-41411772 None:intergenic 20.0%
!!! ATTTTGTACTGAGTTTTTAA+TGG + Chr4:41411276-41411295 MsG0480020442.01.T01:intron 20.0%
!!! CTCTTTTATTTTTTTTCCAA+CGG - Chr4:41408711-41408730 None:intergenic 20.0%
!!! CTTCACGTTTTATTTAAAAA+AGG + Chr4:41411463-41411482 MsG0480020442.01.T01:intron 20.0%
!!! CTTTTTTAAATAAAACGTGA+AGG - Chr4:41411465-41411484 None:intergenic 20.0%
!!! TAGATTTTTGATCATTTCAA+TGG + Chr4:41408643-41408662 MsG0480020442.01.T01:intron 20.0%
!!! TGAACAAGCTTATATATTTT+TGG - Chr4:41411609-41411628 None:intergenic 20.0%
!!! TTCTTTTCAAAATCAAACTA+AGG + Chr4:41408478-41408497 MsG0480020442.01.T01:intron 20.0%
!!! TTTTTGTTCTATCTTATGTA+GGG + Chr4:41410692-41410711 MsG0480020442.01.T01:intron 20.0%
!!! TTTTTTGTTCTATCTTATGT+AGG + Chr4:41410691-41410710 MsG0480020442.01.T01:intron 20.0%
! ACAAAGAATCCAATTAGAAT+TGG - Chr4:41409188-41409207 None:intergenic 25.0%
! AGACAACTTAATTAATTGCA+CGG - Chr4:41412033-41412052 None:intergenic 25.0%
! ATCATATCTTGATTTCACTT+TGG - Chr4:41409357-41409376 None:intergenic 25.0%
! ATGGTATATGATGTATACTT+TGG - Chr4:41410386-41410405 None:intergenic 25.0%
! GATAAAAAGTCATTTCTTGA+AGG + Chr4:41410080-41410099 MsG0480020442.01.T01:CDS 25.0%
! GCGAAGATCTAAATTTAATT+AGG - Chr4:41410619-41410638 None:intergenic 25.0%
! GTAATGTTCTTCATTTGATT+TGG - Chr4:41411809-41411828 None:intergenic 25.0%
! GTGAAATCAAGATATGATTA+TGG + Chr4:41409359-41409378 MsG0480020442.01.T01:CDS 25.0%
! GTTATCATCAAAACTCTTTA+AGG - Chr4:41412147-41412166 None:intergenic 25.0%
! TAATATTTGTTCAAGTGTAC+AGG + Chr4:41412197-41412216 MsG0480020442.01.T01:intron 25.0%
! TAATTGGAGAAAGAAAAAGT+TGG + Chr4:41411658-41411677 MsG0480020442.01.T01:intron 25.0%
! TCATATCTTGATTTCACTTT+GGG - Chr4:41409356-41409375 None:intergenic 25.0%
! TGGAATCAATACCTTAAAAT+TGG + Chr4:41410298-41410317 MsG0480020442.01.T01:CDS 25.0%
! TTATAAAGTCACATCATCAT+TGG + Chr4:41412227-41412246 MsG0480020442.01.T01:intron 25.0%
! TTCTCTTTAATATCTGTATC+TGG + Chr4:41409404-41409423 MsG0480020442.01.T01:CDS 25.0%
! TTGTACTATTGTGTAGAATA+TGG - Chr4:41408427-41408446 None:intergenic 25.0%
!! ACCAAATACTAATTTTTGTG+TGG - Chr4:41412003-41412022 None:intergenic 25.0%
!! AGACCAAAATTTTCATAAAG+TGG - Chr4:41408320-41408339 None:intergenic 25.0%
!! CAACCACTTTATGAAAATTT+TGG + Chr4:41408314-41408333 MsG0480020442.01.T01:CDS 25.0%
!! CTTTTATTAATCGTAGTTAG+TGG - Chr4:41409836-41409855 None:intergenic 25.0%
!! TCTTGTTTGGTATTTATAAC+TGG - Chr4:41411917-41411936 None:intergenic 25.0%
!! TGAGTTTTTAATGGTTAATG+AGG + Chr4:41411285-41411304 MsG0480020442.01.T01:intron 25.0%
!! TGATGATGAAGTATTACAAA+TGG + Chr4:41409433-41409452 MsG0480020442.01.T01:CDS 25.0%
!! TTTTAAATAAAACGTGAAGG+TGG - Chr4:41411462-41411481 None:intergenic 25.0%
!! TTTTAGTATACTTGAGATCA+TGG - Chr4:41410489-41410508 None:intergenic 25.0%
!!! AAAGAGTTTTGATGATAACA+AGG + Chr4:41412148-41412167 MsG0480020442.01.T01:intron 25.0%
!!! AAAGTTGGATGATTTGTTTT+CGG + Chr4:41411673-41411692 MsG0480020442.01.T01:intron 25.0%
!!! ATATTATTTTACGTGTGATC+TGG + Chr4:41411578-41411597 MsG0480020442.01.T01:intron 25.0%
!!! ATTTTAAGGTATTGATTCCA+AGG - Chr4:41410298-41410317 None:intergenic 25.0%
!!! ATTTTTTCTGTAAGATGATG+TGG + Chr4:41411718-41411737 MsG0480020442.01.T01:intron 25.0%
!!! GTTTTGTTTTAGTAAGTTAC+AGG + Chr4:41411413-41411432 MsG0480020442.01.T01:intron 25.0%
!!! TATTATTTTACGTGTGATCT+GGG + Chr4:41411579-41411598 MsG0480020442.01.T01:intron 25.0%
!!! TTTTAAGGTATTGATTCCAA+GGG - Chr4:41410297-41410316 None:intergenic 25.0%
!!! TTTTAATTCCATTATGTGGT+TGG + Chr4:41411317-41411336 MsG0480020442.01.T01:intron 25.0%
!!! TTTTATTTTTTTTCCAACGG+AGG - Chr4:41408708-41408727 None:intergenic 25.0%
!!! TTTTTTTTTGCAGCATTTGT+AGG + Chr4:41410020-41410039 MsG0480020442.01.T01:intron 25.0%
AAAAGGTTTGAATAGGACAA+TGG + Chr4:41409091-41409110 MsG0480020442.01.T01:CDS 30.0%
AATCAAACTAAGGCATATCT+CGG + Chr4:41408488-41408507 MsG0480020442.01.T01:intron 30.0%
AATGAATACCAACCACATAA+TGG - Chr4:41411328-41411347 None:intergenic 30.0%
AGTTGCAAGATAGAAAAAGA+TGG + Chr4:41411949-41411968 MsG0480020442.01.T01:intron 30.0%
ATTATTAGGGTATACCAACA+TGG - Chr4:41411249-41411268 None:intergenic 30.0%
GAAAACACAAACAAAGGATT+AGG + Chr4:41412561-41412580 MsG0480020442.01.T01:three_prime_UTR 30.0%
GCCACACAAAAATTAGTATT+TGG + Chr4:41411999-41412018 MsG0480020442.01.T01:intron 30.0%
GTGATTCATTCACTAAAAGT+TGG + Chr4:41408254-41408273 MsG0480020442.01.T01:CDS 30.0%
TATTACAAATGGCTCATAAG+AGG + Chr4:41409444-41409463 MsG0480020442.01.T01:CDS 30.0%
TTAATCTTAGACTATGTGTC+TGG - Chr4:41410594-41410613 None:intergenic 30.0%
TTTGGTATTTATAACTGGTC+AGG - Chr4:41411912-41411931 None:intergenic 30.0%
! AAAAACCGATTTATCCATTG+AGG + Chr4:41408972-41408991 MsG0480020442.01.T01:intron 30.0%
! CTGCTATAGCATCTTTTATA+AGG + Chr4:41409324-41409343 MsG0480020442.01.T01:CDS 30.0%
! CTTTAGGAAAAGGTTTGAAT+AGG + Chr4:41409084-41409103 MsG0480020442.01.T01:CDS 30.0%
! GCAAATAAAAGCTTTTCCAA+AGG + Chr4:41408163-41408182 MsG0480020442.01.T01:CDS 30.0%
! GGATTCTTTGTATTTCTACA+AGG + Chr4:41409197-41409216 MsG0480020442.01.T01:CDS 30.0%
! TTAATTAAGTTGTCTGTCGT+TGG + Chr4:41412038-41412057 MsG0480020442.01.T01:intron 30.0%
!! ACATTTTTAGGAGCTACTTT+AGG + Chr4:41409068-41409087 MsG0480020442.01.T01:intron 30.0%
!! AGTGAATGAATCACTTTTCT+TGG - Chr4:41408248-41408267 None:intergenic 30.0%
!! CACGAGTTTTTAATTAAGGA+AGG - Chr4:41411749-41411768 None:intergenic 30.0%
!! CATTTTTGTTTGTCCTGTTT+GGG + Chr4:41409511-41409530 MsG0480020442.01.T01:CDS 30.0%
!! GTGAATGAATCACTTTTCTT+GGG - Chr4:41408247-41408266 None:intergenic 30.0%
!! TGTCTGGTTTGGATTATTTA+TGG - Chr4:41410578-41410597 None:intergenic 30.0%
AATGACAAGAAAGTCATCAC+CGG + Chr4:41410811-41410830 MsG0480020442.01.T01:CDS 35.0%
AATGTGCTTAGAATCAAGCA+TGG + Chr4:41410757-41410776 MsG0480020442.01.T01:CDS 35.0%
ACATGTGAGTTCTCAATCTT+AGG - Chr4:41411103-41411122 None:intergenic 35.0%
ACATTTCTGTGCATAGTTCT+TGG - Chr4:41410742-41410761 None:intergenic 35.0%
ACCTTCTTCATAAGAACCTT+TGG - Chr4:41408182-41408201 None:intergenic 35.0%
AGCATCCTCAATGGATAAAT+CGG - Chr4:41408980-41408999 None:intergenic 35.0%
ATAATTTCCTTGCATTCACG+TGG - Chr4:41410553-41410572 None:intergenic 35.0%
CATGTGTACTAGTTAGAGTA+TGG + Chr4:41408138-41408157 MsG0480020442.01.T01:CDS 35.0%
CCAAACAGGACAAACAAAAA+TGG - Chr4:41409513-41409532 None:intergenic 35.0%
CGTTGCTTCAATCAAGTTTA+TGG + Chr4:41410879-41410898 MsG0480020442.01.T01:CDS 35.0%
GGATTCGAAAACACAAACAA+AGG + Chr4:41412555-41412574 MsG0480020442.01.T01:three_prime_UTR 35.0%
TAAAAGCAATGATGAGTCAC+TGG + Chr4:41410124-41410143 MsG0480020442.01.T01:CDS 35.0%
TAACTGGTCAGGTTTATCTA+CGG - Chr4:41411901-41411920 None:intergenic 35.0%
TAAGATTGAGAACTCACATG+TGG + Chr4:41411102-41411121 MsG0480020442.01.T01:CDS 35.0%
TCCAAAGGTTCTTATGAAGA+AGG + Chr4:41408178-41408197 MsG0480020442.01.T01:CDS 35.0%
TGAAGCTTAGATGATTCTGA+AGG + Chr4:41412282-41412301 MsG0480020442.01.T01:intron 35.0%
TGACTCAATTGCTATCAAGT+TGG + Chr4:41409550-41409569 MsG0480020442.01.T01:CDS 35.0%
TGAGTACTTCGAAACAACAA+AGG + Chr4:41410043-41410062 MsG0480020442.01.T01:CDS 35.0%
TTGATTGAAGCAACGAGTTA+AGG - Chr4:41410874-41410893 None:intergenic 35.0%
! AATTTTTGTGTGGCCAATTG+CGG - Chr4:41411993-41412012 None:intergenic 35.0%
! ATACTTGGTAGCTTCTTAGA+AGG + Chr4:41409575-41409594 MsG0480020442.01.T01:CDS 35.0%
! ATAGGCCAATTTTGCAAGAT+GGG + Chr4:41410240-41410259 MsG0480020442.01.T01:intron 35.0%
! ATATCGAATGGAAGCTCTAA+AGG + Chr4:41410342-41410361 MsG0480020442.01.T01:CDS 35.0%
! GTTTGTGTTTTCGAATCCAA+TGG - Chr4:41412553-41412572 None:intergenic 35.0%
! TAAAAGTCAACCTTTTCGCT+TGG - Chr4:41412085-41412104 None:intergenic 35.0%
! TATAGGCCAATTTTGCAAGA+TGG + Chr4:41410239-41410258 MsG0480020442.01.T01:intron 35.0%
! TGATATTGTTGATTGCACTG+AGG + Chr4:41410958-41410977 MsG0480020442.01.T01:CDS 35.0%
! TTAGGAGCTACTTTAGGAAA+AGG + Chr4:41409074-41409093 MsG0480020442.01.T01:intron 35.0%
!! AGGTTATCCACCATTTTTCT+TGG + Chr4:41409464-41409483 MsG0480020442.01.T01:CDS 35.0%
!! ATTACTAAGAGCATCCTCAA+TGG - Chr4:41408989-41409008 None:intergenic 35.0%
!! ATTTTGGTCTTTCAGCAATG+TGG + Chr4:41408330-41408349 MsG0480020442.01.T01:CDS 35.0%
!! CCATTTTTGTTTGTCCTGTT+TGG + Chr4:41409510-41409529 MsG0480020442.01.T01:CDS 35.0%
!! GAGAAAGTGCACCAATTTTA+AGG - Chr4:41410312-41410331 None:intergenic 35.0%
!! GCTATCAAGTTGGAAATACT+TGG + Chr4:41409560-41409579 MsG0480020442.01.T01:CDS 35.0%
!! TTATCCACCATTTTTCTTGG+AGG + Chr4:41409467-41409486 MsG0480020442.01.T01:CDS 35.0%
!! TTCTTCGACAAAGTCTTGTT+TGG - Chr4:41411930-41411949 None:intergenic 35.0%
!! TTTTGGTCTTTCAGCAATGT+GGG + Chr4:41408331-41408350 MsG0480020442.01.T01:CDS 35.0%
AAAGGGCAGCTTAGTGTAAT+AGG - Chr4:41408566-41408585 None:intergenic 40.0%
AAATGCTATGAGTCTTGAGC+TGG + Chr4:41411870-41411889 MsG0480020442.01.T01:intron 40.0%
AATTTGAACTTGCCATGACC+TGG - Chr4:41410268-41410287 None:intergenic 40.0%
ACAGGGGAACCAATTCTAAT+TGG + Chr4:41409176-41409195 MsG0480020442.01.T01:CDS 40.0%
AGAACCTCCAAGAAAAATGG+TGG - Chr4:41409474-41409493 None:intergenic 40.0%
AGCAGAACCTCCAAGAAAAA+TGG - Chr4:41409477-41409496 None:intergenic 40.0%
AGTCTTAGCTTCGTAAGACA+TGG + Chr4:41408669-41408688 MsG0480020442.01.T01:intron 40.0%
AGTTCAAATTTCGTCACCCT+TGG + Chr4:41410278-41410297 MsG0480020442.01.T01:CDS 40.0%
AGTTGGACTTGCAATCTCTT+TGG + Chr4:41408271-41408290 MsG0480020442.01.T01:CDS 40.0%
ATAAAACGTGAAGGTGGACA+TGG - Chr4:41411456-41411475 None:intergenic 40.0%
CTAGTACACATGCTTTCTCT+TGG - Chr4:41408130-41408149 None:intergenic 40.0%
CTTAGACTATGTGTCTGGTT+TGG - Chr4:41410589-41410608 None:intergenic 40.0%
GAATAGGACAATGGCAACAT+TGG + Chr4:41409100-41409119 MsG0480020442.01.T01:CDS 40.0%
GAGTTCTCAATCTTAGGATC+TGG - Chr4:41411097-41411116 None:intergenic 40.0%
GCTTGGCGTTTGATTCATAA+AGG - Chr4:41412068-41412087 None:intergenic 40.0%
GGAGATTGTGACACTTCTTT+AGG - Chr4:41411055-41411074 None:intergenic 40.0%
TAAAACGTGAAGGTGGACAT+GGG - Chr4:41411455-41411474 None:intergenic 40.0%
TACCTAATAGATACCTCCGT+TGG + Chr4:41408692-41408711 MsG0480020442.01.T01:intron 40.0%
TCAATGCAAAAGCTGTCCAT+TGG + Chr4:41412534-41412553 MsG0480020442.01.T01:three_prime_UTR 40.0%
TCGTCAATGTGCATATCGAA+TGG + Chr4:41410330-41410349 MsG0480020442.01.T01:CDS 40.0%
TCTAATGACTCTGAGCTACT+AGG - Chr4:41410452-41410471 None:intergenic 40.0%
TGGTGAAATAGCTTCTGATG+AGG - Chr4:41412464-41412483 None:intergenic 40.0%
TGGTTCCCATCTTGCAAAAT+TGG - Chr4:41410248-41410267 None:intergenic 40.0%
! AATTTTGCAAGATGGGAACC+AGG + Chr4:41410247-41410266 MsG0480020442.01.T01:CDS 40.0%
! ATAGTGCTTCTGAAGACAAG+AGG + Chr4:41412373-41412392 MsG0480020442.01.T01:intron 40.0%
! CGAGTTAAGGCTTTTTACTG+CGG - Chr4:41410861-41410880 None:intergenic 40.0%
!! CATTACTTGGCTAGCTTATC+TGG + Chr4:41409149-41409168 MsG0480020442.01.T01:CDS 40.0%
!! CTTCAGAAGCACTATTCTTC+AGG - Chr4:41412368-41412387 None:intergenic 40.0%
!! TTCCAACGGAGGTATCTATT+AGG - Chr4:41408697-41408716 None:intergenic 40.0%
!!! GTGGTTTTTGAGTACACAGT+TGG + Chr4:41408371-41408390 MsG0480020442.01.T01:CDS 40.0%
AAGCAATGATGAGTCACTGG+TGG + Chr4:41410127-41410146 MsG0480020442.01.T01:intron 45.0%
ACCAGAAGCTGAATCTCAAC+TGG + Chr4:41412480-41412499 MsG0480020442.01.T01:three_prime_UTR 45.0%
AGCAATGATGAGTCACTGGT+GGG + Chr4:41410128-41410147 MsG0480020442.01.T01:intron 45.0%
CTACTTACCACGTGAATGCA+AGG + Chr4:41410543-41410562 MsG0480020442.01.T01:intron 45.0%
CTAGCTTATCTGGAGAGACA+GGG + Chr4:41409159-41409178 MsG0480020442.01.T01:CDS 45.0%
GAATCAAACGCCAAGCGAAA+AGG + Chr4:41412072-41412091 MsG0480020442.01.T01:intron 45.0%
GCTTTCTCTTGGTCCATGTT+TGG - Chr4:41408119-41408138 None:intergenic 45.0%
GGTAAGTAGCTCAGAGTCAT+TGG - Chr4:41410532-41410551 None:intergenic 45.0%
GGTTCAGCACATTCACATGT+TGG - Chr4:41411076-41411095 None:intergenic 45.0%
TAGCTTATCTGGAGAGACAG+GGG + Chr4:41409160-41409179 MsG0480020442.01.T01:CDS 45.0%
TAGTGTAATAGGCTTCCACC+AGG - Chr4:41408555-41408574 None:intergenic 45.0%
TCCAGTTGAGATTCAGCTTC+TGG - Chr4:41412484-41412503 None:intergenic 45.0%
TTCAGGAGCAGCTTTACTTC+AGG - Chr4:41412351-41412370 None:intergenic 45.0%
TTTGTTTGTCCTGTTTGGGC+TGG + Chr4:41409515-41409534 MsG0480020442.01.T01:CDS 45.0%
! AAGGCATATCTCGGTGCAAA+CGG + Chr4:41408497-41408516 MsG0480020442.01.T01:intron 45.0%
! ACAATGGCAACATTGGTAGC+TGG + Chr4:41409107-41409126 MsG0480020442.01.T01:CDS 45.0%
! ACATTGGTAGCTGGTGCTTT+AGG + Chr4:41409116-41409135 MsG0480020442.01.T01:CDS 45.0%
! TAGCTGGTGCTTTAGGTGTT+GGG + Chr4:41409123-41409142 MsG0480020442.01.T01:CDS 45.0%
!! TTCAGGAGCGCTATTTCTTC+AGG - Chr4:41412334-41412353 None:intergenic 45.0%
!! AAAAATAATAAATGTTATAT+TGG - Chr4:41409763-41409782 None:intergenic 5.0%
AACTCTTCACCAGCCCAAAC+AGG - Chr4:41409527-41409546 None:intergenic 50.0%
AATGAAGCAACTGTCGCAGC+TGG - Chr4:41410932-41410951 None:intergenic 50.0%
AATGTGGGCAGTGATGACTG+TGG + Chr4:41408346-41408365 MsG0480020442.01.T01:CDS 50.0%
ATCCTCCTCATTGCCGCAAT+TGG + Chr4:41411977-41411996 MsG0480020442.01.T01:intron 50.0%
GTAATAGGCTTCCACCAGGT+GGG - Chr4:41408551-41408570 None:intergenic 50.0%
TGTAATAGGCTTCCACCAGG+TGG - Chr4:41408552-41408571 None:intergenic 50.0%
TTCAGGAGCAGCTTGACTTC+AGG - Chr4:41412317-41412336 None:intergenic 50.0%
! AGCTGGTGCTTTAGGTGTTG+GGG + Chr4:41409124-41409143 MsG0480020442.01.T01:CDS 50.0%
! GCTAGCTTATCTGGAGAGAC+AGG + Chr4:41409158-41409177 MsG0480020442.01.T01:CDS 50.0%
! GCTTCTGATGATGTGGCTTC+TGG - Chr4:41412400-41412419 None:intergenic 50.0%
! GTAGCTGGTGCTTTAGGTGT+TGG + Chr4:41409122-41409141 MsG0480020442.01.T01:CDS 50.0%
! TGACGCAGCTTCTGATGATG+TGG - Chr4:41412407-41412426 None:intergenic 50.0%
!! AGGTGTTGGGGCTCATTACT+TGG + Chr4:41409136-41409155 MsG0480020442.01.T01:CDS 50.0%
GCAAGATGGGAACCAGGTCA+TGG + Chr4:41410253-41410272 MsG0480020442.01.T01:CDS 55.0%
GCGTTCGCAACGTGAGTTTC+CGG - Chr4:41410833-41410852 None:intergenic 55.0%
TGTGGCCAATTGCGGCAATG+AGG - Chr4:41411985-41412004 None:intergenic 55.0%
! ACCAGGTGGGAGCATGGAAA+GGG - Chr4:41408538-41408557 None:intergenic 55.0%
! GCATATCTCGGTGCAAACGG+TGG + Chr4:41408500-41408519 MsG0480020442.01.T01:intron 55.0%
ACCCTTTCCATGCTCCCACC+TGG + Chr4:41408534-41408553 MsG0480020442.01.T01:intron 60.0%
CTTTCCATGCTCCCACCTGG+TGG + Chr4:41408537-41408556 MsG0480020442.01.T01:intron 60.0%
GGCAGTGATGACTGTGGTGG+TGG + Chr4:41408352-41408371 MsG0480020442.01.T01:CDS 60.0%
GGCCAATTGCGGCAATGAGG+AGG - Chr4:41411982-41412001 None:intergenic 60.0%
GTGGGCAGTGATGACTGTGG+TGG + Chr4:41408349-41408368 MsG0480020442.01.T01:CDS 60.0%
! CACCAGGTGGGAGCATGGAA+AGG - Chr4:41408539-41408558 None:intergenic 60.0%
GCTTCCACCAGGTGGGAGCA+TGG - Chr4:41408544-41408563 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 41408107 41412582 41408107 ID=MsG0480020442.01;Name=MsG0480020442.01
Chr4 mRNA 41408107 41412582 41408107 ID=MsG0480020442.01.T01;Parent=MsG0480020442.01;Name=MsG0480020442.01.T01;_AED=0.33;_eAED=0.41;_QI=0|0|0|1|1|1|7|180|461
Chr4 exon 41408107 41408392 41408107 ID=MsG0480020442.01.T01:exon:17001;Parent=MsG0480020442.01.T01
Chr4 exon 41409078 41409218 41409078 ID=MsG0480020442.01.T01:exon:17002;Parent=MsG0480020442.01.T01
Chr4 exon 41409324 41409596 41409324 ID=MsG0480020442.01.T01:exon:17003;Parent=MsG0480020442.01.T01
Chr4 exon 41410042 41410145 41410042 ID=MsG0480020442.01.T01:exon:17004;Parent=MsG0480020442.01.T01
Chr4 exon 41410244 41410387 41410244 ID=MsG0480020442.01.T01:exon:17005;Parent=MsG0480020442.01.T01
Chr4 exon 41410713 41411148 41410713 ID=MsG0480020442.01.T01:exon:17006;Parent=MsG0480020442.01.T01
Chr4 exon 41412401 41412582 41412401 ID=MsG0480020442.01.T01:exon:17007;Parent=MsG0480020442.01.T01
Chr4 CDS 41408107 41408392 41408107 ID=MsG0480020442.01.T01:cds;Parent=MsG0480020442.01.T01
Chr4 CDS 41409078 41409218 41409078 ID=MsG0480020442.01.T01:cds;Parent=MsG0480020442.01.T01
Chr4 CDS 41409324 41409596 41409324 ID=MsG0480020442.01.T01:cds;Parent=MsG0480020442.01.T01
Chr4 CDS 41410042 41410145 41410042 ID=MsG0480020442.01.T01:cds;Parent=MsG0480020442.01.T01
Chr4 CDS 41410244 41410387 41410244 ID=MsG0480020442.01.T01:cds;Parent=MsG0480020442.01.T01
Chr4 CDS 41410713 41411148 41410713 ID=MsG0480020442.01.T01:cds;Parent=MsG0480020442.01.T01
Chr4 CDS 41412401 41412402 41412401 ID=MsG0480020442.01.T01:cds;Parent=MsG0480020442.01.T01
Chr4 three_prime_UTR 41412403 41412582 41412403 ID=MsG0480020442.01.T01:three_prime_utr;Parent=MsG0480020442.01.T01
Gene Sequence

>MsG0480020442.01.T01

ATGGTGTCTCCAAACATGGACCAAGAGAAAGCATGTGTACTAGTTAGAGTATGGAAGCAAATAAAAGCTTTTCCAAAGGTTCTTATGAAGAAGGTGCTATGCATTTGTAAGTTATCAAAAGAGATAGCACAAGATGACCCAAGAAAAGTGATTCATTCACTAAAAGTTGGACTTGCAATCTCTTTGGTGTCTCTATTTTACTACTATCAACCACTTTATGAAAATTTTGGTCTTTCAGCAATGTGGGCAGTGATGACTGTGGTGGTGGTTTTTGAGTACACAGTTGGAGCTACTTTAGGAAAAGGTTTGAATAGGACAATGGCAACATTGGTAGCTGGTGCTTTAGGTGTTGGGGCTCATTACTTGGCTAGCTTATCTGGAGAGACAGGGGAACCAATTCTAATTGGATTCTTTGTATTTCTACAAGCTGCTATAGCATCTTTTATAAGGTTCTTTCCCAAAGTGAAATCAAGATATGATTATGGGATGCTTATATTTATCTTGACATTCTCTTTAATATCTGTATCTGGATTTCGTGATGATGAAGTATTACAAATGGCTCATAAGAGGTTATCCACCATTTTTCTTGGAGGTTCTGCTTGTGTGATGATTTCCATTTTTGTTTGTCCTGTTTGGGCTGGTGAAGAGTTGCATGACTCAATTGCTATCAAGTTGGAAATACTTGGTAGCTTCTTAGAAGGTGAGTACTTCGAAACAACAAAGGAAGAAGAATCTAAAGATAAAAAGTCATTTCTTGAAGGTTATAAAAGCATTCTAAATTCTAAAAGCAATGATGAGTCACTGGCCAATTTTGCAAGATGGGAACCAGGTCATGGCAAGTTCAAATTTCGTCACCCTTGGAATCAATACCTTAAAATTGGTGCACTTTCTCGTCAATGTGCATATCGAATGGAAGCTCTAAAGGAACAACTCAATTCTGACACCAAAGGTTCACACGAAATTCGTAGTACAATCCAAGAACTATGCACAGAAATGTGCTTAGAATCAAGCATGGCTTTGAAACAAATGAGTTCATCAATAAAAACAATGACAAGAAAGTCATCACCGGAAACTCACGTTGCGAACGCAAAAGCCGCAGTAAAAAGCCTTAACTCGTTGCTTCAATCAAGTTTATGGAAAGAAGCAGATCTTTTATCAGTTATACCAGCTGCGACAGTTGCTTCATTACTAATTGATATTGTTGATTGCACTGAGGAAATAGCTGATTCTGCTAATGTTCTTGCTTCACTCATAAATTTTGATGTTGATGAAACAGATGAAAAATTACCTAAAGAAGTGTCACAATCTCCAACATGTGAATGTGCTGAACCAGATCCTAAGATTGAGAACTCACATGTGGTTATTATAGTTGAAGATTCAAAATAA
Protein sequence

>MsG0480020442.01.T01

MVSPNMDQEKACVLVRVWKQIKAFPKVLMKKVLCICKLSKEIAQDDPRKVIHSLKVGLAISLVSLFYYYQPLYENFGLSAMWAVMTVVVVFEYTVGATLGKGLNRTMATLVAGALGVGAHYLASLSGETGEPILIGFFVFLQAAIASFIRFFPKVKSRYDYGMLIFILTFSLISVSGFRDDEVLQMAHKRLSTIFLGGSACVMISIFVCPVWAGEELHDSIAIKLEILGSFLEGEYFETTKEEESKDKKSFLEGYKSILNSKSNDESLANFARWEPGHGKFKFRHPWNQYLKIGALSRQCAYRMEALKEQLNSDTKGSHEIRSTIQELCTEMCLESSMALKQMSSSIKTMTRKSSPETHVANAKAAVKSLNSLLQSSLWKEADLLSVIPAATVASLLIDIVDCTEEIADSANVLASLINFDVDETDEKLPKEVSQSPTCECAEPDPKIENSHVVIIVEDSK*