AlfalfaGEDB | MsG0180004232.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004232.01

KEGG: -
GO: GO:0015743
PFAM: PF11744

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004232.01.T01	XP_013468853.1	94.937	474	23	1	1	474	1	473	0	930

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004232.01.T01	O23086	48.637	477	206	6	5	443	8	483	8.80E-159	462

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004232.01.T01	A0A072VXW6	94.937	474	23	1	1	474	1	473	0.0	930

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048134.01	MsG0180004232.01	0.840074	1.082401e-57	1.524640e-54
MsG0180000897.01	MsG0180004232.01	0.803140	4.017467e-49	2.003461e-46
MsG0180001008.01	MsG0180004232.01	0.829006	6.550754e-55	6.619473e-52
MsG0180001029.01	MsG0180004232.01	0.805426	1.342856e-49	7.102130e-47
MsG0180003320.01	MsG0180004232.01	0.837163	6.111633e-57	7.871923e-54
MsG0180003322.01	MsG0180004232.01	0.803361	3.616182e-49	1.813529e-46
MsG0180003375.01	MsG0180004232.01	0.800133	1.663022e-48	7.683716e-46
MsG0180004232.01	MsG0180004359.01	0.980929	2.281331e-151	5.578820e-145
MsG0180004232.01	MsG0280006546.01	0.832621	8.517186e-56	9.571731e-53
MsG0180004232.01	MsG0280006575.01	0.813661	2.286585e-51	1.502295e-48

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PPI

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Gene1	Gene2	Type
MsG0480020442.01	MsG0180004232.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004232.01.T01	MTR_1g077660	94.937	474	23	1	1	474	1	473	0.0	930
MsG0180004232.01.T01	MTR_1g077670	82.983	476	75	4	4	474	10	484	0.0	802
MsG0180004232.01.T01	MTR_7g106260	44.622	437	225	5	19	450	11	435	7.68e-115	347
MsG0180004232.01.T01	MTR_4g051575	44.527	402	198	5	37	435	35	414	3.96e-110	334
MsG0180004232.01.T01	MTR_2g087288	43.035	402	213	4	46	443	37	426	1.27e-109	332
MsG0180004232.01.T01	MTR_1g115140	41.622	370	205	4	25	384	16	384	1.19e-97	304
MsG0180004232.01.T01	MTR_2g087285	41.606	411	221	5	34	439	25	421	4.57e-97	300
MsG0180004232.01.T01	MTR_1g115175	34.615	520	254	8	23	458	10	527	1.38e-96	301
MsG0180004232.01.T01	MTR_1g115190	41.667	372	206	5	23	384	11	381	1.94e-87	278
MsG0180004232.01.T01	MTR_5g014310	40.688	349	199	4	42	383	53	400	6.02e-84	269

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004232.01.T01	AT4G00910	49.892	465	206	5	5	443	8	471	1.28e-163	471
MsG0180004232.01.T01	AT1G08440	43.596	406	211	2	36	435	3	396	3.33e-117	353
MsG0180004232.01.T01	AT2G27240	42.054	409	219	3	36	438	3	399	4.14e-112	340
MsG0180004232.01.T01	AT1G08430	42.410	415	218	3	36	441	3	405	7.43e-111	337
MsG0180004232.01.T01	AT2G27240	40.230	435	216	4	36	438	3	425	9.63e-109	332
MsG0180004232.01.T01	AT3G11680	43.721	430	215	7	18	438	10	421	2.78e-107	327
MsG0180004232.01.T01	AT3G11680	43.721	430	215	7	18	438	8	419	3.15e-107	327
MsG0180004232.01.T01	AT4G17970	37.978	366	222	3	21	383	15	378	5.95e-89	282
MsG0180004232.01.T01	AT5G46600	37.950	361	214	3	32	383	28	387	1.60e-87	278
MsG0180004232.01.T01	AT5G46610	36.224	392	243	2	9	394	4	394	2.18e-87	278

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Find 84 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTAAACAGAATATG+TGG	0.528989	1:+75260089	MsG0180004232.01.T01:CDS
AAACCTTTATATGATGGTGT+TGG	0.534000	1:+75259817	MsG0180004232.01.T01:CDS
AAACTCGCCAACTCTTTGCA+AGG	0.594774	1:+75260888	MsG0180004232.01.T01:CDS
AAAGGCTAGAAGCCCGGCAA+GGG	0.569854	1:-75260117	None:intergenic
AAAGGTAGAATGGAGAATCC+AGG	0.582137	1:+75259606	MsG0180004232.01.T01:CDS
AAATTGAAACGCCCATGAGC+AGG	0.504173	1:-75261432	None:intergenic
AAGAGTTGGCGAGTTTGTCG+AGG	0.617634	1:-75260881	None:intergenic
AAGATTTATACCAACTATAA+AGG	0.295645	1:+75260656	MsG0180004232.01.T01:CDS
AAGCTGACCTTGCAAAGAGT+TGG	0.485113	1:-75260895	None:intergenic
AATAATAGAATTAATTCAAG+TGG	0.567797	1:+75261951	MsG0180004232.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTCAATGCACAAGTCTT+CGG	-	Chr1:75260926-75260945	None:intergenic	30.0%
ATTTATCCTCACTTTCAGTT+TGG	+	Chr1:75260704-75260723	MsG0180004232.01.T01:CDS	30.0%
ATTTCTCTTGTAAATAGGAC+CGG	+	Chr1:75260434-75260453	MsG0180004232.01.T01:intron	30.0%
CAAAAAAATGCAAAAGAAGG+TGG	+	Chr1:75261907-75261926	MsG0180004232.01.T01:CDS	30.0%
CTATTCCTACTTTCAAACAA+TGG	-	Chr1:75259765-75259784	None:intergenic	30.0%
GCAAATTTGTGAAAAAAGCT+TGG	+	Chr1:75259707-75259726	MsG0180004232.01.T01:CDS	30.0%
TGACTAATGAAAAGGTAGAA+TGG	+	Chr1:75259596-75259615	MsG0180004232.01.T01:CDS	30.0%
TGCCTCAAGATTAAGTATAT+AGG	-	Chr1:75261659-75261678	None:intergenic	30.0%
TTCATCCATTGTTTGAAAGT+AGG	+	Chr1:75259757-75259776	MsG0180004232.01.T01:CDS	30.0%
TTGTCACATTTAGACATTTC+TGG	-	Chr1:75262069-75262088	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	75259595	75262176	75259595	ID=MsG0180004232.01;Name=MsG0180004232.01
Chr1	mRNA	75259595	75262176	75259595	ID=MsG0180004232.01.T01;Parent=MsG0180004232.01;Name=MsG0180004232.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|0\|0\|1\|1\|1\|6\|0\|474
Chr1	exon	75259595	75259895	75259595	ID=MsG0180004232.01.T01:exon:31776;Parent=MsG0180004232.01.T01
Chr1	exon	75260075	75260215	75260075	ID=MsG0180004232.01.T01:exon:31777;Parent=MsG0180004232.01.T01
Chr1	exon	75260637	75260909	75260637	ID=MsG0180004232.01.T01:exon:31778;Parent=MsG0180004232.01.T01
Chr1	exon	75261172	75261275	75261172	ID=MsG0180004232.01.T01:exon:31779;Parent=MsG0180004232.01.T01
Chr1	exon	75261411	75261554	75261411	ID=MsG0180004232.01.T01:exon:31780;Parent=MsG0180004232.01.T01
Chr1	exon	75261715	75262176	75261715	ID=MsG0180004232.01.T01:exon:31781;Parent=MsG0180004232.01.T01
Chr1	CDS	75259595	75259895	75259595	ID=MsG0180004232.01.T01:cds;Parent=MsG0180004232.01.T01
Chr1	CDS	75260075	75260215	75260075	ID=MsG0180004232.01.T01:cds;Parent=MsG0180004232.01.T01
Chr1	CDS	75260637	75260909	75260637	ID=MsG0180004232.01.T01:cds;Parent=MsG0180004232.01.T01
Chr1	CDS	75261172	75261275	75261172	ID=MsG0180004232.01.T01:cds;Parent=MsG0180004232.01.T01
Chr1	CDS	75261411	75261554	75261411	ID=MsG0180004232.01.T01:cds;Parent=MsG0180004232.01.T01
Chr1	CDS	75261715	75262176	75261715	ID=MsG0180004232.01.T01:cds;Parent=MsG0180004232.01.T01

Gene Sequence

>MsG0180004232.01.T01

ATGACTAATGAAAAGGTAGAATGGAGAATCCAGGTAGAAGATGGTCCATGGAAGAGAGCTGGAATTTCTTGCAGCATGTGGGCATTTATTACAAGTCTTTATTCCAAGTTGTGCAAATTTGTGAAAAAAGCTTGGGAGATTGGTGTGAATGACCCTAGAAAATTCATCCATTGTTTGAAAGTAGGAATAGCACTTACGGCAGTGTCACTTTTCTACTACTTGAAACCTTTATATGATGGTGTTGGAAGAAATGCTATGTGGGCTGTCATGACCGTGATTGTAGTCTTTGAGTACACTGCGGGTGCTACAATATACAAAAGTGTAAACAGAATATGTGGAACTACCCTTGCCGGGCTTCTAGCCTTTGGTGTACATTGGGTTGCTAGTAAAGCAGGAGATCAATGGGAACCTGTAATTGTTGGAGCCTCACTTTTTCTACTAGCTTCAGCAACCACATTTTCAAGATTTATACCAACTATAAAGGCTCGTTTTGATTATGGTGCTATGATATTTATCCTCACTTTCAGTTTGGTTTCAATATCCGGTTATAGAATTGATGAATTGTTTGATTTGGCACGAACAAGAATTTCCACTATTATAATTGGAACTTCATTGTGCATAATCGTTAGCACGACTGTTCGCCCTGTTTGGGCTGGTCTAGAACTCTATGTTTTGGTCACGGGAAACCTCGACAAACTCGCCAACTCTTTGCAAGGTTGTGCAGCTCAGTATTTTGAATCCCAAGCAGCAAGTGAGTCTAACAAAAATTTGATGGGTTACAAGTGTGCGCTAAATTCCAAAGCAACAGAAGAATCATTGGCTAATTTAGCTAGATGGGAGCCTGCTCATGGGCGTTTCAATTTTCGTCACCCATGGAAGCAATATCTTAAAATTGGTGCTACAATGCGTAGATGTGCTTCTTGCATTGATGCTCTTATTGGTTGCATAAATTCAGAAAACAAGACCTCAGATGACATCATGAAGATTATGAGCAGAACCTCTATGAAAGTAGGTGACAACTCTGCAAATGTCTTAAGAGAGTTAGCAAGTACAATAAAGAATATGACAAAATCAAACAAACTTGATATTCTAGTCATAGAGATGAATAATGCAGCCCTAGAGCTTCAGAATTTATTAAAATCTTATCCAAACACACAAAAAAATGCAAAAGAAGGTGGTGATGCAAAACTCGAAATCCCAATAATAGAATTAATTCAAGTGGTCACAGTTGTTTCATTGCTTACTGAAATTGTAGCTCGTGTGGAAGACATTGTGAAATGTGTTGAAGAATTATCAGATTTAGCTAAGTTCAAACCAGAAATGTCTAAATGTGACAAGACCAAACATCATTCAGCAGACAACAAGATCTCACCAGACCAACAGAATGATGAGGAGGCAAAAATCAAGACACTCCAGATGGTTTGA

Protein sequence

>MsG0180004232.01.T01

MTNEKVEWRIQVEDGPWKRAGISCSMWAFITSLYSKLCKFVKKAWEIGVNDPRKFIHCLKVGIALTAVSLFYYLKPLYDGVGRNAMWAVMTVIVVFEYTAGATIYKSVNRICGTTLAGLLAFGVHWVASKAGDQWEPVIVGASLFLLASATTFSRFIPTIKARFDYGAMIFILTFSLVSISGYRIDELFDLARTRISTIIIGTSLCIIVSTTVRPVWAGLELYVLVTGNLDKLANSLQGCAAQYFESQAASESNKNLMGYKCALNSKATEESLANLARWEPAHGRFNFRHPWKQYLKIGATMRRCASCIDALIGCINSENKTSDDIMKIMSRTSMKVGDNSANVLRELASTIKNMTKSNKLDILVIEMNNAALELQNLLKSYPNTQKNAKEGGDAKLEIPIIELIQVVTVVSLLTEIVARVEDIVKCVEELSDLAKFKPEMSKCDKTKHHSADNKISPDQQNDEEAKIKTLQMV*