AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020953.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020953.01.T01 MTR_4g063830 98.261 230 4 0 1 230 85 314 9.29e-165 463
MsG0480020953.01.T01 MTR_2g096760 82.251 231 40 1 1 230 84 314 1.74e-136 391
MsG0480020953.01.T01 MTR_4g021880 71.304 230 65 1 1 229 170 399 2.97e-110 324
MsG0480020953.01.T01 MTR_4g021880 71.304 230 65 1 1 229 170 399 1.40e-108 323
MsG0480020953.01.T01 MTR_0020s0130 33.621 232 115 7 1 204 83 303 2.45e-19 87.0
MsG0480020953.01.T01 MTR_1g100797 33.520 179 92 3 1 152 83 261 4.26e-16 77.8
MsG0480020953.01.T01 MTR_4g129470 33.708 178 94 3 1 155 1 177 1.74e-15 75.5
MsG0480020953.01.T01 MTR_4g129470 33.708 178 94 3 1 155 89 265 1.81e-15 75.9
MsG0480020953.01.T01 MTR_1g100797 31.250 192 100 5 26 185 4 195 3.44e-12 65.9
MsG0480020953.01.T01 MTR_4g116160 32.927 164 92 5 3 164 110 257 1.75e-11 63.9
MsG0480020953.01.T01 MTR_4g116160 32.927 164 92 5 3 164 110 257 2.09e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020953.01.T01 AT2G28840 77.391 230 52 0 1 230 70 299 3.86e-129 373
MsG0480020953.01.T01 AT2G28840 77.391 230 52 0 1 230 84 313 1.12e-128 372
MsG0480020953.01.T01 AT5G07270 33.333 225 120 5 1 197 83 305 1.54e-17 82.0
MsG0480020953.01.T01 AT5G57740 32.124 193 108 3 1 171 89 280 3.44e-14 72.0
MsG0480020953.01.T01 AT2G03430 35.714 126 68 2 23 148 40 152 3.14e-11 62.0
MsG0480020953.01.T01 AT5G60070 29.902 204 120 7 3 202 149 333 3.77e-11 63.2

Find 85 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTTACTACTTTGCTTAT+AGG 0.183226 4:+51075478 MsG0480020953.01.T01:CDS
TTTATTAGAGCAGGCCTTAT+TGG 0.254482 4:+51075324 MsG0480020953.01.T01:CDS
GACAATATCTCTGAGGTAAT+TGG 0.268429 4:+51075427 MsG0480020953.01.T01:CDS
CGTCTCCTACGTGATGCATC+TGG 0.278643 4:+51074619 MsG0480020953.01.T01:CDS
CTAGTCCCGTGGCTGCTTCT+TGG 0.292776 4:+51074163 MsG0480020953.01.T01:CDS
TGTGCTTCAACTAGCAGATA+TGG 0.305279 4:+51074410 MsG0480020953.01.T01:CDS
TTCCCTGTTCGCGTCCAATA+AGG 0.329855 4:-51075338 None:intergenic
TGGTCATTCTTCTTGCCTTA+AGG 0.368140 4:+51074119 MsG0480020953.01.T01:CDS
AGGCCTTATTGGACGCGAAC+AGG 0.370869 4:+51075335 MsG0480020953.01.T01:CDS
TGTGGAGATGGAAGAGAGTA+AGG 0.374735 4:-51075388 None:intergenic
TTGCATTATGCTGCTTACTA+TGG 0.392266 4:+51074099 MsG0480020953.01.T01:CDS
TACTTCAAAGCAACCACATA+TGG 0.395193 4:-51075196 None:intergenic
AACAGAATGTGCACACATTC+AGG 0.420204 4:-51074368 None:intergenic
CATCTGCACAGCCTCTTGTA+TGG 0.420700 4:+51075254 MsG0480020953.01.T01:CDS
CCTCTTCATTTAGCAGCTAA+AGG 0.427567 4:+51074550 MsG0480020953.01.T01:CDS
CTGATTATCTTCAATGATGA+TGG 0.429013 4:-51075277 None:intergenic
AGGTGCTACACCATTGCATC+TGG 0.451079 4:+51074328 MsG0480020953.01.T01:CDS
TCTAATAAAACTTTAGCCTC+TGG 0.458151 4:-51075310 None:intergenic
TGCTATATTTGCAGATGTCC+TGG 0.458321 4:+51074520 MsG0480020953.01.T01:intron
GTGCTTCAACTAGCAGATAT+GGG 0.478560 4:+51074411 MsG0480020953.01.T01:CDS
CTTCATATTGCTGCTGCCAA+TGG 0.485862 4:+51073425 MsG0480020953.01.T01:five_prime_UTR
TATTGGACGCGAACAGGGAA+AGG 0.487813 4:+51075341 MsG0480020953.01.T01:CDS
TGCTGCCAATGGTCAGATCC+AGG 0.493489 4:+51073436 MsG0480020953.01.T01:five_prime_UTR
TGCATTGCTGCCAACATAAG+TGG 0.493653 4:-51073900 None:intergenic
CAGCAGAAAGTATTGCCTTA+AGG 0.496959 4:-51074134 None:intergenic
AGCAAAGTAGTAAATTCAAA+TGG 0.505165 4:-51075472 None:intergenic
GCTATATTTGCAGATGTCCT+GGG 0.514636 4:+51074521 MsG0480020953.01.T01:intron
CATCCGCGAATTATTAGCAT+GGG 0.514704 4:+51074588 MsG0480020953.01.T01:CDS
CTCTTTCGTGCTGTTCAACA+TGG 0.515412 4:+51073322 MsG0480020953.01.T01:five_prime_UTR
TGTGTTGAATCGACAAAAGC+AGG 0.516759 4:+51073741 MsG0480020953.01.T01:five_prime_UTR
TTGATTTGAAAACGTGGAGA+AGG 0.518118 4:+51073254 MsG0480020953.01.T01:five_prime_UTR
ATCTCCACACTCTGATCGAA+TGG 0.518796 4:+51075402 MsG0480020953.01.T01:CDS
AGCAGTTATTCAGACTAACT+TGG 0.526064 4:-51073103 None:intergenic
TTTGAAAACGTGGAGAAGGA+TGG 0.530704 4:+51073258 MsG0480020953.01.T01:five_prime_UTR
CACCCCATGCTAATAATTCG+CGG 0.532650 4:-51074591 None:intergenic
ATTCGATCAGAGTGTGGAGA+TGG 0.534607 4:-51075400 None:intergenic
GTCTCCTACGTGATGCATCT+GGG 0.535134 4:+51074620 MsG0480020953.01.T01:CDS
ATGGTTGGTAAGAAATCAAA+GGG 0.536261 4:-51075453 None:intergenic
AATGGTTGGTAAGAAATCAA+AGG 0.539117 4:-51075454 None:intergenic
GTAGTACGATTGAGAAGAGA+AGG 0.541763 4:-51073380 None:intergenic
AATTCAGACCCCACTTATGT+TGG 0.543384 4:+51073890 MsG0480020953.01.T01:intron
CTTATGTTGGCAGCAATGCA+TGG 0.544992 4:+51073903 MsG0480020953.01.T01:exon
CAAAGTGGTCTTAGTTGTAG+AGG 0.545298 4:+51073283 MsG0480020953.01.T01:five_prime_UTR
CCTTTAGCTGCTAAATGAAG+AGG 0.547668 4:-51074550 None:intergenic
ATGCAGGCGGATACCATATG+TGG 0.548895 4:+51075183 MsG0480020953.01.T01:intron
GAGGGAGGACAGTGTCACAT+AGG 0.550444 4:-51073152 None:intergenic
GACTAACCAAGAAGCAGCCA+CGG 0.550497 4:-51074169 None:intergenic
GCATTGCTGCCAACATAAGT+GGG 0.556318 4:-51073899 None:intergenic
AAGTAGTAAATTCAAATGGT+TGG 0.566988 4:-51075468 None:intergenic
GGCCTTATTGGACGCGAACA+GGG 0.567914 4:+51075336 MsG0480020953.01.T01:CDS
CAATCAAATGATAATAAATG+TGG 0.568505 4:+51073227 MsG0480020953.01.T01:five_prime_UTR
TATTCAGACTAACTTGGCTG+TGG 0.570278 4:-51073097 None:intergenic
GTGAATATTAGAGACGGTAG+AGG 0.570533 4:+51074308 MsG0480020953.01.T01:CDS
GTGGAAAAGTTGCTTGAAGC+TGG 0.573507 4:+51073939 MsG0480020953.01.T01:CDS
TTGAAAACGTGGAGAAGGAT+GGG 0.574196 4:+51073259 MsG0480020953.01.T01:five_prime_UTR
ATTGGACGCGAACAGGGAAA+GGG 0.577168 4:+51075342 MsG0480020953.01.T01:CDS
TTAATGTTTGATGTGTGTCA+TGG 0.578777 4:+51074066 MsG0480020953.01.T01:CDS
TTGAACCTGGATCTGACCAT+TGG 0.585236 4:-51073441 None:intergenic
TGGCAGCAGCAATATGAAGA+GGG 0.588977 4:-51073421 None:intergenic
ATCTGGCAGCTCGTCAAAGA+CGG 0.594811 4:+51074345 MsG0480020953.01.T01:CDS
AGACTAACTTGGCTGTGGCA+TGG 0.597086 4:-51073092 None:intergenic
TGACGAGCTGCCAGATGCAA+TGG 0.602034 4:-51074338 None:intergenic
GTGCACATTCTGTTGTGTAG+TGG 0.607255 4:+51074377 MsG0480020953.01.T01:CDS
AATGATGATGGCCATACAAG+AGG 0.608678 4:-51075265 None:intergenic
TGCTGCTCAATCTAGTCCCG+TGG 0.608978 4:+51074152 MsG0480020953.01.T01:CDS
GCATGGAAAGATTGAATGTG+TGG 0.610223 4:+51073920 MsG0480020953.01.T01:CDS
GCATCCGCGAATTATTAGCA+TGG 0.610332 4:+51074587 MsG0480020953.01.T01:CDS
CGAATTATTAGCATGGGGTG+CGG 0.613204 4:+51074594 MsG0480020953.01.T01:CDS
CTTCATTTAGCAGCTAAAGG+AGG 0.613756 4:+51074553 MsG0480020953.01.T01:CDS
AAATGAAGAGGAGTACTCCC+AGG 0.616255 4:-51074538 None:intergenic
TTGGCAGCAGCAATATGAAG+AGG 0.619663 4:-51073422 None:intergenic
ACTAACCAAGAAGCAGCCAC+GGG 0.627620 4:-51074168 None:intergenic
TGTAGAGGTAGTCATGAACA+TGG 0.643863 4:+51073298 MsG0480020953.01.T01:five_prime_UTR
CGGTTTGTGAATATTAGAGA+CGG 0.645981 4:+51074302 MsG0480020953.01.T01:CDS
TCATCCATTCGATCAGAGTG+TGG 0.646169 4:-51075406 None:intergenic
TAGTACGATTGAGAAGAGAA+GGG 0.656985 4:-51073379 None:intergenic
TGGAGAAGGATGGGTCAAAG+TGG 0.658025 4:+51073268 MsG0480020953.01.T01:five_prime_UTR
AATCAGTGAACTTAATCCAG+AGG 0.659408 4:+51075294 MsG0480020953.01.T01:CDS
GGCAGCAGCAATATGAAGAG+GGG 0.664522 4:-51073420 None:intergenic
ATCCGCGAATTATTAGCATG+GGG 0.692205 4:+51074589 MsG0480020953.01.T01:CDS
GTTGCTTTGAAGTACAAACA+TGG 0.699828 4:+51075205 MsG0480020953.01.T01:CDS
GGAAACTTGATTTGAAAACG+TGG 0.709563 4:+51073248 MsG0480020953.01.T01:five_prime_UTR
CATTGCTGCCAACATAAGTG+GGG 0.709787 4:-51073898 None:intergenic
AATGGATGACAATATCTCTG+AGG 0.711499 4:+51075420 MsG0480020953.01.T01:CDS
TGTACCCAGATGCATCACGT+AGG 0.746949 4:-51074624 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTATGAAAAATTATC+AGG + Chr4:51074041-51074060 MsG0480020953.01.T01:intron 10.0%
!!! TGATTATATTTTCAAATTAT+AGG - Chr4:51074980-51074999 None:intergenic 10.0%
!!! TTATCTTAATTGTATTTTTT+TGG + Chr4:51073864-51073883 MsG0480020953.01.T01:intron 10.0%
!! AAATATGTAAACCTATTATT+TGG + Chr4:51074914-51074933 MsG0480020953.01.T01:intron 15.0%
!! TCATAAAATTGAAATAAACA+TGG - Chr4:51073989-51074008 None:intergenic 15.0%
!!! ATTTGATTTTGATTTGAATT+TGG + Chr4:51073779-51073798 MsG0480020953.01.T01:intron 15.0%
!!! TGATTTAAAACATTTAACAA+TGG + Chr4:51074248-51074267 MsG0480020953.01.T01:intron 15.0%
!! AAAATTGAAATAAACATGGA+GGG - Chr4:51073985-51074004 None:intergenic 20.0%
!! ATTAAAATGAAAAACCCAAT+TGG - Chr4:51073607-51073626 None:intergenic 20.0%
!! ATTAGTTGTAGTAAAATGTA+AGG + Chr4:51074938-51074957 MsG0480020953.01.T01:intron 20.0%
!! CAATCAAATGATAATAAATG+TGG + Chr4:51073227-51073246 MsG0480020953.01.T01:five_prime_UTR 20.0%
!! TAAAATTGAAATAAACATGG+AGG - Chr4:51073986-51074005 None:intergenic 20.0%
!! TTAAAATGAAAAACCCAATT+GGG - Chr4:51073606-51073625 None:intergenic 20.0%
!!! AACACGTTTCATAATAATTT+TGG - Chr4:51073551-51073570 None:intergenic 20.0%
!!! GAAAATATAATCACTTGTTT+TGG + Chr4:51074987-51075006 MsG0480020953.01.T01:intron 20.0%
!!! GATTTGAATTTGGATTTTAA+TGG + Chr4:51073789-51073808 MsG0480020953.01.T01:intron 20.0%
!!! GGTTTTTCATTTTAATTTCT+GGG + Chr4:51073611-51073630 MsG0480020953.01.T01:intron 20.0%
!!! TTGTTTGCTATTTTCAATTT+AGG + Chr4:51075031-51075050 MsG0480020953.01.T01:intron 20.0%
! AACACGAAAAAAGAATGTAA+AGG - Chr4:51073473-51073492 None:intergenic 25.0%
! AAGAATACATTATATTGCAG+GGG + Chr4:51074272-51074291 MsG0480020953.01.T01:intron 25.0%
! AAGTAGTAAATTCAAATGGT+TGG - Chr4:51075471-51075490 None:intergenic 25.0%
! ACACGAAAAAAGAATGTAAA+GGG - Chr4:51073472-51073491 None:intergenic 25.0%
! ACTTGAAAGTTGAATAAAAC+AGG - Chr4:51075124-51075143 None:intergenic 25.0%
! AGCAAAGTAGTAAATTCAAA+TGG - Chr4:51075475-51075494 None:intergenic 25.0%
! CAAGAATACATTATATTGCA+GGG + Chr4:51074271-51074290 MsG0480020953.01.T01:intron 25.0%
! GAATCATAACAATGTTTCTT+GGG - Chr4:51075068-51075087 None:intergenic 25.0%
! GAATTTACTACTTTGCTTAT+AGG + Chr4:51075478-51075497 MsG0480020953.01.T01:CDS 25.0%
! TACAACTAATGCCAAATAAT+AGG - Chr4:51074928-51074947 None:intergenic 25.0%
! TGAATCATAACAATGTTTCT+TGG - Chr4:51075069-51075088 None:intergenic 25.0%
! TTATTATGAAACGTGTTAGA+TGG + Chr4:51073554-51073573 MsG0480020953.01.T01:intron 25.0%
! TTGTATGATCTATCAATTGT+GGG - Chr4:51074896-51074915 None:intergenic 25.0%
! TTTGTATGATCTATCAATTG+TGG - Chr4:51074897-51074916 None:intergenic 25.0%
!! GTCATTATTTCTTTCCTAAT+TGG + Chr4:51074202-51074221 MsG0480020953.01.T01:intron 25.0%
!! GTTTTATCTAAGCTTTTAGA+TGG + Chr4:51073703-51073722 MsG0480020953.01.T01:five_prime_UTR 25.0%
!! TAAAAGAGTAGAAAGTTTTC+AGG - Chr4:51073351-51073370 None:intergenic 25.0%
!!! ATATAATCACTTGTTTTGGT+AGG + Chr4:51074991-51075010 MsG0480020953.01.T01:intron 25.0%
!!! GGGTTTTTCATTTTAATTTC+TGG + Chr4:51073610-51073629 MsG0480020953.01.T01:intron 25.0%
!!! TGTTGAATCATTTTGTTTTG+TGG + Chr4:51074487-51074506 MsG0480020953.01.T01:intron 25.0%
!!! TTTTTTTTTTGGGAATTTGC+AGG + Chr4:51073681-51073700 MsG0480020953.01.T01:intron 25.0%
AAAATGTAAGGAAGTCTCTA+AGG + Chr4:51074950-51074969 MsG0480020953.01.T01:intron 30.0%
ACTGTATCATCTCAAGTTAA+CGG - Chr4:51074765-51074784 None:intergenic 30.0%
AGAAATAATGACAAACCGAA+AGG - Chr4:51074194-51074213 None:intergenic 30.0%
AGAATACATTATATTGCAGG+GGG + Chr4:51074273-51074292 MsG0480020953.01.T01:intron 30.0%
AGGGAGAAAAACATATTGAA+AGG + Chr4:51075361-51075380 MsG0480020953.01.T01:CDS 30.0%
CTGATTATCTTCAATGATGA+TGG - Chr4:51075280-51075299 None:intergenic 30.0%
GCAAGAATACATTATATTGC+AGG + Chr4:51074270-51074289 MsG0480020953.01.T01:intron 30.0%
TAACAATGTTTCTTGGGATA+AGG - Chr4:51075062-51075081 None:intergenic 30.0%
TCTAATAAAACTTTAGCCTC+TGG - Chr4:51075313-51075332 None:intergenic 30.0%
TTAATGTTTGATGTGTGTCA+TGG + Chr4:51074066-51074085 MsG0480020953.01.T01:CDS 30.0%
! CTTTCCTAATTGGTTCATAT+CGG + Chr4:51074212-51074231 MsG0480020953.01.T01:intron 30.0%
!! AATGGTTGGTAAGAAATCAA+AGG - Chr4:51075457-51075476 None:intergenic 30.0%
!! ATGGTTGGTAAGAAATCAAA+GGG - Chr4:51075456-51075475 None:intergenic 30.0%
AAAAACCCAATTGGGAACTT+GGG - Chr4:51073598-51073617 None:intergenic 35.0%
AACTTGAGATTGAACTGTTG+AGG + Chr4:51074831-51074850 MsG0480020953.01.T01:intron 35.0%
AATCAGTGAACTTAATCCAG+AGG + Chr4:51075294-51075313 MsG0480020953.01.T01:CDS 35.0%
AATGGATGACAATATCTCTG+AGG + Chr4:51075420-51075439 MsG0480020953.01.T01:CDS 35.0%
ACCAATGATGATCATGGATT+TGG + Chr4:51074690-51074709 MsG0480020953.01.T01:intron 35.0%
AGAGAAGAGAGAGAAAAAGA+AGG - Chr4:51073178-51073197 None:intergenic 35.0%
AGCAGTTATTCAGACTAACT+TGG - Chr4:51073106-51073125 None:intergenic 35.0%
ATCACCGATATGAACCAATT+AGG - Chr4:51074219-51074238 None:intergenic 35.0%
ATTGGTGAGATCTTATCAAG+TGG - Chr4:51074676-51074695 None:intergenic 35.0%
CATAAACACACACAGTTTGA+AGG - Chr4:51075166-51075185 None:intergenic 35.0%
CGGTTTGTGAATATTAGAGA+CGG + Chr4:51074302-51074321 MsG0480020953.01.T01:CDS 35.0%
GAGAAGAGAGAGAAAAAGAA+GGG - Chr4:51073177-51073196 None:intergenic 35.0%
GATCTATCAATTGTGGGATT+TGG - Chr4:51074890-51074909 None:intergenic 35.0%
TACTTCAAAGCAACCACATA+TGG - Chr4:51075199-51075218 None:intergenic 35.0%
TAGTACGATTGAGAAGAGAA+GGG - Chr4:51073382-51073401 None:intergenic 35.0%
TCATGGATTTGGATTTCCTA+TGG + Chr4:51074701-51074720 MsG0480020953.01.T01:intron 35.0%
TCCAAATCCATGATCATCAT+TGG - Chr4:51074694-51074713 None:intergenic 35.0%
TGGAAAGAATTGAATGTGTG+TGG + Chr4:51073809-51073828 MsG0480020953.01.T01:intron 35.0%
TTGAACTCCGAATTATCAGA+TGG - Chr4:51073506-51073525 None:intergenic 35.0%
! AAACAAGAGCACAATAGGAA+AGG - Chr4:51075017-51075036 None:intergenic 35.0%
! ATAGCAAACAAGAGCACAAT+AGG - Chr4:51075022-51075041 None:intergenic 35.0%
! GGAAACTTGATTTGAAAACG+TGG + Chr4:51073248-51073267 MsG0480020953.01.T01:five_prime_UTR 35.0%
! TTGATTTGAAAACGTGGAGA+AGG + Chr4:51073254-51073273 MsG0480020953.01.T01:five_prime_UTR 35.0%
! TTGCATTATGCTGCTTACTA+TGG + Chr4:51074099-51074118 MsG0480020953.01.T01:CDS 35.0%
! TTTATTAGAGCAGGCCTTAT+TGG + Chr4:51075324-51075343 MsG0480020953.01.T01:CDS 35.0%
!! GACAATATCTCTGAGGTAAT+TGG + Chr4:51075427-51075446 MsG0480020953.01.T01:CDS 35.0%
!! GTTGCTTTGAAGTACAAACA+TGG + Chr4:51075205-51075224 MsG0480020953.01.T01:CDS 35.0%
!!! GGCTAAAGTTTTATTAGAGC+AGG + Chr4:51075315-51075334 MsG0480020953.01.T01:CDS 35.0%
!!! TTTTGTCGATTCAACACATC+TGG - Chr4:51073739-51073758 None:intergenic 35.0%
AACAGAATGTGCACACATTC+AGG - Chr4:51074371-51074390 None:intergenic 40.0%
AACGATGAGTCTGATAAGCT+TGG + Chr4:51074452-51074471 MsG0480020953.01.T01:intron 40.0%
AAGAGAGAGAAAAAGAAGGG+AGG - Chr4:51073174-51073193 None:intergenic 40.0%
AATTCAGACCCCACTTATGT+TGG + Chr4:51073890-51073909 MsG0480020953.01.T01:intron 40.0%
ACTCCGAATTATCAGATGGA+CGG - Chr4:51073502-51073521 None:intergenic 40.0%
AGAGAGAGAAAAAGAAGGGA+GGG - Chr4:51073173-51073192 None:intergenic 40.0%
ATCCGCGAATTATTAGCATG+GGG + Chr4:51074589-51074608 MsG0480020953.01.T01:CDS 40.0%
CAAACTGTGTGTGTTTATGC+AGG + Chr4:51075167-51075186 MsG0480020953.01.T01:intron 40.0%
CATCCGCGAATTATTAGCAT+GGG + Chr4:51074588-51074607 MsG0480020953.01.T01:CDS 40.0%
CCTCTTCATTTAGCAGCTAA+AGG + Chr4:51074550-51074569 MsG0480020953.01.T01:CDS 40.0%
CCTTTAGCTGCTAAATGAAG+AGG - Chr4:51074553-51074572 None:intergenic 40.0%
CTTCATTTAGCAGCTAAAGG+AGG + Chr4:51074553-51074572 MsG0480020953.01.T01:CDS 40.0%
GAAAAACCCAATTGGGAACT+TGG - Chr4:51073599-51073618 None:intergenic 40.0%
GATCTCACCAATGATGATCA+TGG + Chr4:51074684-51074703 MsG0480020953.01.T01:intron 40.0%
GCATGGAAAGATTGAATGTG+TGG + Chr4:51073920-51073939 MsG0480020953.01.T01:CDS 40.0%
GCTATATTTGCAGATGTCCT+GGG + Chr4:51074521-51074540 MsG0480020953.01.T01:intron 40.0%
GTAAAGGGAAAGATTGAACC+TGG - Chr4:51073457-51073476 None:intergenic 40.0%
GTAGTACGATTGAGAAGAGA+AGG - Chr4:51073383-51073402 None:intergenic 40.0%
GTGAATATTAGAGACGGTAG+AGG + Chr4:51074308-51074327 MsG0480020953.01.T01:CDS 40.0%
GTGCTTCAACTAGCAGATAT+GGG + Chr4:51074411-51074430 MsG0480020953.01.T01:CDS 40.0%
TATTCAGACTAACTTGGCTG+TGG - Chr4:51073100-51073119 None:intergenic 40.0%
TGCTATATTTGCAGATGTCC+TGG + Chr4:51074520-51074539 MsG0480020953.01.T01:intron 40.0%
TGCTTATAGGATGCAGTTGA+AGG + Chr4:51075491-51075510 MsG0480020953.01.T01:CDS 40.0%
TGGATTTGGATTTCCTATGG+AGG + Chr4:51074704-51074723 MsG0480020953.01.T01:intron 40.0%
TGGTCATTCTTCTTGCCTTA+AGG + Chr4:51074119-51074138 MsG0480020953.01.T01:CDS 40.0%
TGTAGAGGTAGTCATGAACA+TGG + Chr4:51073298-51073317 MsG0480020953.01.T01:five_prime_UTR 40.0%
TGTGCTTCAACTAGCAGATA+TGG + Chr4:51074410-51074429 MsG0480020953.01.T01:CDS 40.0%
TGTGTTGAATCGACAAAAGC+AGG + Chr4:51073741-51073760 MsG0480020953.01.T01:five_prime_UTR 40.0%
TTGAAAACGTGGAGAAGGAT+GGG + Chr4:51073259-51073278 MsG0480020953.01.T01:five_prime_UTR 40.0%
TTTGAAAACGTGGAGAAGGA+TGG + Chr4:51073258-51073277 MsG0480020953.01.T01:five_prime_UTR 40.0%
! CAAAGTGGTCTTAGTTGTAG+AGG + Chr4:51073283-51073302 MsG0480020953.01.T01:five_prime_UTR 40.0%
! TGCTTCTTGGTTAGTCCTTT+CGG + Chr4:51074176-51074195 MsG0480020953.01.T01:intron 40.0%
!! AATGATGATGGCCATACAAG+AGG - Chr4:51075268-51075287 None:intergenic 40.0%
!! CAGCAGAAAGTATTGCCTTA+AGG - Chr4:51074137-51074156 None:intergenic 40.0%
ACTGTGTGTGTTTATGCAGG+CGG + Chr4:51075170-51075189 MsG0480020953.01.T01:intron 45.0%
ATCTCCACACTCTGATCGAA+TGG + Chr4:51075402-51075421 MsG0480020953.01.T01:CDS 45.0%
ATTCGATCAGAGTGTGGAGA+TGG - Chr4:51075403-51075422 None:intergenic 45.0%
ATTGGGAACTTGGGCTCAAA+TGG - Chr4:51073589-51073608 None:intergenic 45.0%
CACCCCATGCTAATAATTCG+CGG - Chr4:51074594-51074613 None:intergenic 45.0%
CATTGCTGCCAACATAAGTG+GGG - Chr4:51073901-51073920 None:intergenic 45.0%
CCTCCGTCCATCTGATAATT+CGG + Chr4:51073496-51073515 MsG0480020953.01.T01:intron 45.0%
CGAATTATTAGCATGGGGTG+CGG + Chr4:51074594-51074613 MsG0480020953.01.T01:CDS 45.0%
CTTATGTTGGCAGCAATGCA+TGG + Chr4:51073903-51073922 MsG0480020953.01.T01:exon 45.0%
CTTCATATTGCTGCTGCCAA+TGG + Chr4:51073425-51073444 MsG0480020953.01.T01:five_prime_UTR 45.0%
GCATCCGCGAATTATTAGCA+TGG + Chr4:51074587-51074606 MsG0480020953.01.T01:CDS 45.0%
GCATTGCTGCCAACATAAGT+GGG - Chr4:51073902-51073921 None:intergenic 45.0%
GTGCACATTCTGTTGTGTAG+TGG + Chr4:51074377-51074396 MsG0480020953.01.T01:CDS 45.0%
GTGGAAAAGTTGCTTGAAGC+TGG + Chr4:51073939-51073958 MsG0480020953.01.T01:CDS 45.0%
TATATTGCAGGGGGTTTGCA+CGG + Chr4:51074282-51074301 MsG0480020953.01.T01:intron 45.0%
TCATCCATTCGATCAGAGTG+TGG - Chr4:51075409-51075428 None:intergenic 45.0%
TGCATTGCTGCCAACATAAG+TGG - Chr4:51073903-51073922 None:intergenic 45.0%
TGGCAGCAGCAATATGAAGA+GGG - Chr4:51073424-51073443 None:intergenic 45.0%
TGTGGAGATGGAAGAGAGTA+AGG - Chr4:51075391-51075410 None:intergenic 45.0%
TTGAACCTGGATCTGACCAT+TGG - Chr4:51073444-51073463 None:intergenic 45.0%
TTGAGCCCAAGTTCCCAATT+GGG + Chr4:51073590-51073609 MsG0480020953.01.T01:intron 45.0%
TTGGCAGCAGCAATATGAAG+AGG - Chr4:51073425-51073444 None:intergenic 45.0%
TTTGAGCCCAAGTTCCCAAT+TGG + Chr4:51073589-51073608 MsG0480020953.01.T01:intron 45.0%
! CTCTTTCGTGCTGTTCAACA+TGG + Chr4:51073322-51073341 MsG0480020953.01.T01:five_prime_UTR 45.0%
!! AAATGAAGAGGAGTACTCCC+AGG - Chr4:51074541-51074560 None:intergenic 45.0%
!!! GATTTTTTTTTTTTTTTTTT+GGG + Chr4:51073671-51073690 MsG0480020953.01.T01:intron 5.0%
!!! TGATTTTTTTTTTTTTTTTT+TGG + Chr4:51073670-51073689 MsG0480020953.01.T01:intron 5.0%
ACTAACCAAGAAGCAGCCAC+GGG - Chr4:51074171-51074190 None:intergenic 50.0%
AGACTAACTTGGCTGTGGCA+TGG - Chr4:51073095-51073114 None:intergenic 50.0%
ATCTGGCAGCTCGTCAAAGA+CGG + Chr4:51074345-51074364 MsG0480020953.01.T01:CDS 50.0%
ATGCAGGCGGATACCATATG+TGG + Chr4:51075183-51075202 MsG0480020953.01.T01:intron 50.0%
ATTGGACGCGAACAGGGAAA+GGG + Chr4:51075342-51075361 MsG0480020953.01.T01:CDS 50.0%
CATCTGCACAGCCTCTTGTA+TGG + Chr4:51075254-51075273 MsG0480020953.01.T01:CDS 50.0%
CCGAATTATCAGATGGACGG+AGG - Chr4:51073499-51073518 None:intergenic 50.0%
GACTAACCAAGAAGCAGCCA+CGG - Chr4:51074172-51074191 None:intergenic 50.0%
GAGAGAAAAAGAAGGGAGGG+AGG - Chr4:51073170-51073189 None:intergenic 50.0%
GGCAGCAGCAATATGAAGAG+GGG - Chr4:51073423-51073442 None:intergenic 50.0%
GTCTCCTACGTGATGCATCT+GGG + Chr4:51074620-51074639 MsG0480020953.01.T01:CDS 50.0%
TATTGGACGCGAACAGGGAA+AGG + Chr4:51075341-51075360 MsG0480020953.01.T01:CDS 50.0%
TGGAGAAGGATGGGTCAAAG+TGG + Chr4:51073268-51073287 MsG0480020953.01.T01:five_prime_UTR 50.0%
TGTACCCAGATGCATCACGT+AGG - Chr4:51074627-51074646 None:intergenic 50.0%
TTCCCTGTTCGCGTCCAATA+AGG - Chr4:51075341-51075360 None:intergenic 50.0%
! AGGTGCTACACCATTGCATC+TGG + Chr4:51074328-51074347 MsG0480020953.01.T01:CDS 50.0%
!!! CAGCGTGCTTTTTCCTCCAT+AGG - Chr4:51074720-51074739 None:intergenic 50.0%
CGTCTCCTACGTGATGCATC+TGG + Chr4:51074619-51074638 MsG0480020953.01.T01:CDS 55.0%
GAGGGAGGACAGTGTCACAT+AGG - Chr4:51073155-51073174 None:intergenic 55.0%
TGACGAGCTGCCAGATGCAA+TGG - Chr4:51074341-51074360 None:intergenic 55.0%
TGCTGCCAATGGTCAGATCC+AGG + Chr4:51073436-51073455 MsG0480020953.01.T01:five_prime_UTR 55.0%
TGCTGCTCAATCTAGTCCCG+TGG + Chr4:51074152-51074171 MsG0480020953.01.T01:CDS 55.0%
!! AGGCCTTATTGGACGCGAAC+AGG + Chr4:51075335-51075354 MsG0480020953.01.T01:CDS 55.0%
!! GGCCTTATTGGACGCGAACA+GGG + Chr4:51075336-51075355 MsG0480020953.01.T01:CDS 55.0%
CTAGTCCCGTGGCTGCTTCT+TGG + Chr4:51074163-51074182 MsG0480020953.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 51073062 51075510 51073062 ID=MsG0480020953.01;Name=MsG0480020953.01
Chr4 mRNA 51073062 51075510 51073062 ID=MsG0480020953.01.T01;Parent=MsG0480020953.01;Name=MsG0480020953.01.T01;_AED=0.34;_eAED=0.37;_QI=465|1|0.85|1|1|1|7|0|251
Chr4 exon 51073062 51073457 51073062 ID=MsG0480020953.01.T01:exon:16722;Parent=MsG0480020953.01.T01
Chr4 exon 51073703 51073762 51073703 ID=MsG0480020953.01.T01:exon:16723;Parent=MsG0480020953.01.T01
Chr4 exon 51073897 51073968 51073897 ID=MsG0480020953.01.T01:exon:16724;Parent=MsG0480020953.01.T01
Chr4 exon 51074063 51074184 51074063 ID=MsG0480020953.01.T01:exon:16725;Parent=MsG0480020953.01.T01
Chr4 exon 51074292 51074432 51074292 ID=MsG0480020953.01.T01:exon:16726;Parent=MsG0480020953.01.T01
Chr4 exon 51074534 51074641 51074534 ID=MsG0480020953.01.T01:exon:16727;Parent=MsG0480020953.01.T01
Chr4 exon 51075189 51075510 51075189 ID=MsG0480020953.01.T01:exon:16728;Parent=MsG0480020953.01.T01
Chr4 five_prime_UTR 51073062 51073457 51073062 ID=MsG0480020953.01.T01:five_prime_utr;Parent=MsG0480020953.01.T01
Chr4 five_prime_UTR 51073703 51073762 51073703 ID=MsG0480020953.01.T01:five_prime_utr;Parent=MsG0480020953.01.T01
Chr4 five_prime_UTR 51073897 51073905 51073897 ID=MsG0480020953.01.T01:five_prime_utr;Parent=MsG0480020953.01.T01
Chr4 CDS 51073906 51073968 51073906 ID=MsG0480020953.01.T01:cds;Parent=MsG0480020953.01.T01
Chr4 CDS 51074063 51074184 51074063 ID=MsG0480020953.01.T01:cds;Parent=MsG0480020953.01.T01
Chr4 CDS 51074292 51074432 51074292 ID=MsG0480020953.01.T01:cds;Parent=MsG0480020953.01.T01
Chr4 CDS 51074534 51074641 51074534 ID=MsG0480020953.01.T01:cds;Parent=MsG0480020953.01.T01
Chr4 CDS 51075189 51075510 51075189 ID=MsG0480020953.01.T01:cds;Parent=MsG0480020953.01.T01
Gene Sequence

>MsG0480020953.01.T01

ATGTTGGCAGCAATGCATGGAAAGATTGAATGTGTGGAAAAGTTGCTTGAAGCTGGTGCTAATGTTTTAATGTTTGATGTGTGTCATGGAAGAACTTGCTTGCATTATGCTGCTTACTATGGTCATTCTTCTTGCCTTAAGGCAATACTTTCTGCTGCTCAATCTAGTCCCGTGGCTGCTTCTTGGGGGTTTGCACGGTTTGTGAATATTAGAGACGGTAGAGGTGCTACACCATTGCATCTGGCAGCTCGTCAAAGACGGCCTGAATGTGTGCACATTCTGTTGTGTAGTGGAGCTCTTGTTTGTGCTTCAACTAGCAGATATGGATGTCCTGGGAGTACTCCTCTTCATTTAGCAGCTAAAGGAGGATCTCTCGATTGCATCCGCGAATTATTAGCATGGGGTGCGGATCGTCTCCTACGTGATGCATCTGGGCGGATACCATATGTGGTTGCTTTGAAGTACAAACATGGAGCATGTGCAGCATTGCTAAATCTTTCATCTGCACAGCCTCTTGTATGGCCATCATCATTGAAGATAATCAGTGAACTTAATCCAGAGGCTAAAGTTTTATTAGAGCAGGCCTTATTGGACGCGAACAGGGAAAGGGAGAAAAACATATTGAAAGGCAGTCCTTACTCTCTTCCATCTCCACACTCTGATCGAATGGATGACAATATCTCTGAGGTAATTGGACACCCTTTGATTTCTTACCAACCATTTGAATTTACTACTTTGCTTATAGGATGCAGTTGA
Protein sequence

>MsG0480020953.01.T01

MLAAMHGKIECVEKLLEAGANVLMFDVCHGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLCSGALVCASTSRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLLRDASGRIPYVVALKYKHGACAALLNLSSAQPLVWPSSLKIISELNPEAKVLLEQALLDANREREKNILKGSPYSLPSPHSDRMDDNISEVIGHPLISYQPFEFTTLLIGCS*