Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021670.01.T01 | XP_024630237.1 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.83E-89 | 266 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021670.01.T01 | Q6NMM1 | 76.429 | 140 | 33 | 0 | 1 | 140 | 1 | 140 | 6.36E-76 | 224 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021670.01.T01 | A0A396IN33 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 8.73e-90 | 266 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0780035979.01 | MsG0480021670.01 | PPI |
MsG0780035979.01 | MsG0480021670.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021670.01.T01 | MTR_5g089500 | 88.571 | 140 | 16 | 0 | 1 | 140 | 1 | 140 | 8.06e-88 | 252 |
MsG0480021670.01.T01 | MTR_0180s0070 | 97.692 | 130 | 3 | 0 | 11 | 140 | 6 | 135 | 8.34e-85 | 244 |
MsG0480021670.01.T01 | MTR_7g006340 | 50.413 | 121 | 60 | 0 | 2 | 122 | 1 | 121 | 1.02e-31 | 109 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021670.01.T01 | AT5G01430 | 80.000 | 140 | 28 | 0 | 1 | 140 | 1 | 140 | 1.64e-81 | 236 |
MsG0480021670.01.T01 | AT5G01430 | 80.000 | 140 | 28 | 0 | 1 | 140 | 1 | 140 | 1.64e-81 | 236 |
MsG0480021670.01.T01 | AT3G49420 | 80.000 | 140 | 28 | 0 | 1 | 140 | 1 | 140 | 1.64e-81 | 236 |
MsG0480021670.01.T01 | AT3G49420 | 80.000 | 140 | 28 | 0 | 1 | 140 | 1 | 140 | 1.64e-81 | 236 |
MsG0480021670.01.T01 | AT3G49420 | 80.000 | 140 | 28 | 0 | 1 | 140 | 1 | 140 | 1.64e-81 | 236 |
MsG0480021670.01.T01 | AT3G03180 | 76.429 | 140 | 33 | 0 | 1 | 140 | 1 | 140 | 6.49e-77 | 224 |
MsG0480021670.01.T01 | AT3G03180 | 75.781 | 128 | 31 | 0 | 1 | 128 | 1 | 128 | 1.07e-68 | 206 |
MsG0480021670.01.T01 | AT3G03180 | 74.510 | 102 | 26 | 0 | 39 | 140 | 1 | 102 | 8.51e-54 | 165 |
MsG0480021670.01.T01 | AT1G05785 | 47.015 | 134 | 70 | 1 | 4 | 137 | 3 | 135 | 2.54e-39 | 129 |
MsG0480021670.01.T01 | AT1G05785 | 47.015 | 134 | 70 | 1 | 4 | 137 | 3 | 135 | 2.54e-39 | 129 |
MsG0480021670.01.T01 | AT1G05785 | 47.015 | 134 | 70 | 1 | 4 | 137 | 3 | 135 | 2.54e-39 | 129 |
MsG0480021670.01.T01 | AT1G05785 | 46.154 | 130 | 70 | 0 | 4 | 133 | 3 | 132 | 1.17e-38 | 129 |
MsG0480021670.01.T01 | AT1G05785 | 46.154 | 130 | 70 | 0 | 4 | 133 | 3 | 132 | 1.17e-38 | 129 |
MsG0480021670.01.T01 | AT1G05785 | 48.760 | 121 | 62 | 0 | 4 | 124 | 3 | 123 | 1.50e-38 | 127 |
MsG0480021670.01.T01 | AT1G05785 | 46.875 | 128 | 67 | 1 | 10 | 137 | 3 | 129 | 1.14e-35 | 120 |
Find 41 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATCAGATCCTCTTTGTTTC+TGG | 0.102218 | 4:-62704385 | MsG0480021670.01.T01:intron |
TATATTGGGATGGCCTATTT+TGG | 0.127317 | 4:-62704156 | MsG0480021670.01.T01:CDS |
AGGATTCTTGATTCTTATAT+TGG | 0.190758 | 4:-62704171 | MsG0480021670.01.T01:CDS |
TTGCAGAGGATTCCTGTTCT+TGG | 0.230649 | 4:-62703987 | MsG0480021670.01.T01:CDS |
GAGATTGGATTGGGATTAAC+AGG | 0.300780 | 4:-62704583 | MsG0480021670.01.T01:CDS |
GGAATGATTGTGGAATCTTA+TGG | 0.317792 | 4:-62704134 | MsG0480021670.01.T01:CDS |
ATGGGTTCCTCGTACTCTTC+AGG | 0.321975 | 4:-62704115 | MsG0480021670.01.T01:intron |
TTGCTTACAGATCGAATATA+TGG | 0.343776 | 4:+62703948 | None:intergenic |
GGATTCTTGATTCTTATATT+GGG | 0.348817 | 4:-62704170 | MsG0480021670.01.T01:CDS |
TCCACAATCATTCCCAAAAT+AGG | 0.361752 | 4:+62704143 | None:intergenic |
CATGAAACGTAGTAATTTCA+AGG | 0.366317 | 4:-62704320 | MsG0480021670.01.T01:intron |
GTGTAGGGGACAGTCTCATT+TGG | 0.375348 | 4:-62704197 | MsG0480021670.01.T01:intron |
GGATTGGGATTAACAGGCTT+TGG | 0.379485 | 4:-62704577 | MsG0480021670.01.T01:CDS |
GAATGATTGTGGAATCTTAT+GGG | 0.399827 | 4:-62704133 | MsG0480021670.01.T01:CDS |
TGTAGGGGACAGTCTCATTT+GGG | 0.433564 | 4:-62704196 | MsG0480021670.01.T01:intron |
CATAAAACAGAGATTGGATT+GGG | 0.436662 | 4:-62704592 | MsG0480021670.01.T01:intron |
TGGATTTCAGTCCAATGGTC+AGG | 0.446122 | 4:+62704356 | None:intergenic |
TCTTGATTCTTATATTGGGA+TGG | 0.451561 | 4:-62704166 | MsG0480021670.01.T01:CDS |
GACAAGGGTTTGCTAGCAAT+GGG | 0.452057 | 4:-62704517 | MsG0480021670.01.T01:CDS |
AGAGGATTCCTGTTCTTGGT+TGG | 0.473898 | 4:-62703983 | MsG0480021670.01.T01:CDS |
CGTTATATTCTTCTTCGACA+AGG | 0.477898 | 4:-62704533 | MsG0480021670.01.T01:CDS |
CGACAAGGGTTTGCTAGCAA+TGG | 0.479749 | 4:-62704518 | MsG0480021670.01.T01:CDS |
GTTATATTCTTCTTCGACAA+GGG | 0.489982 | 4:-62704532 | MsG0480021670.01.T01:CDS |
TGAACAAACCAACCAAGAAC+AGG | 0.496033 | 4:+62703975 | None:intergenic |
TCTGGAGTATCCCTGACCAT+TGG | 0.509875 | 4:-62704367 | MsG0480021670.01.T01:CDS |
ACATAAAACAGAGATTGGAT+TGG | 0.534212 | 4:-62704593 | MsG0480021670.01.T01:intron |
GGGACAGTCTCATTTGGGAT+AGG | 0.538151 | 4:-62704191 | MsG0480021670.01.T01:CDS |
CAGATCCAGAGCTGTTACAC+AGG | 0.547574 | 4:+62703528 | None:intergenic |
CATGGTGGATTTCAGTCCAA+TGG | 0.562388 | 4:+62704351 | None:intergenic |
TGAACGCTATCGAGGTAGGC+GGG | 0.562724 | 4:-62703553 | MsG0480021670.01.T01:CDS |
CTTGCGATCATTCATCTCAA+AGG | 0.568561 | 4:+62704926 | None:intergenic |
TGTTTGAACGCTATCGAGGT+AGG | 0.608217 | 4:-62703557 | MsG0480021670.01.T01:CDS |
GGATTTCAGTCCAATGGTCA+GGG | 0.609217 | 4:+62704357 | None:intergenic |
CGAAGAAGAATATAACGCCA+AGG | 0.616854 | 4:+62704539 | None:intergenic |
ACGTTTCATGAAGAATTGCA+TGG | 0.620008 | 4:+62704333 | None:intergenic |
TTGAACGCTATCGAGGTAGG+CGG | 0.621081 | 4:-62703554 | MsG0480021670.01.T01:CDS |
CAGCTGTTTGAACGCTATCG+AGG | 0.639687 | 4:-62703561 | MsG0480021670.01.T01:CDS |
GGGATACTCCAGAAACAAAG+AGG | 0.640829 | 4:+62704377 | None:intergenic |
TGCAAGAAAACTGACAGTGT+AGG | 0.675829 | 4:+62704005 | None:intergenic |
AACAAAACCTGAAGAGTACG+AGG | 0.678654 | 4:+62704108 | None:intergenic |
TTTCATGAAGAATTGCATGG+TGG | 0.687707 | 4:+62704336 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATAAATATTTGAATGAA+AGG | + | Chr4:62704574-62704593 | None:intergenic | 10.0% |
!! | TTTCATTCAAATATTTATAT+AGG | - | Chr4:62704573-62704592 | MsG0480021670.01.T01:CDS | 10.0% |
!!! | ATTTTTATTTTTGTTTATGC+TGG | - | Chr4:62703591-62703610 | MsG0480021670.01.T01:intron | 15.0% |
!! | ATGTAAATACAATTACAGAT+AGG | + | Chr4:62703783-62703802 | None:intergenic | 20.0% |
! | AGGATTCTTGATTCTTATAT+TGG | - | Chr4:62704304-62704323 | MsG0480021670.01.T01:intron | 25.0% |
! | ATGAACATCCATTAATTATG+TGG | + | Chr4:62704656-62704675 | None:intergenic | 25.0% |
! | GGATTCTTGATTCTTATATT+GGG | - | Chr4:62704305-62704324 | MsG0480021670.01.T01:intron | 25.0% |
! | TTGTAAATTCAATTCTGACA+TGG | - | Chr4:62703718-62703737 | MsG0480021670.01.T01:intron | 25.0% |
! | TTGTCATATCTAATTGCTAA+TGG | - | Chr4:62704419-62704438 | MsG0480021670.01.T01:intron | 25.0% |
!! | ACATAATTAATGGATGTTCA+TGG | - | Chr4:62704655-62704674 | MsG0480021670.01.T01:intron | 25.0% |
ACATAAAACAGAGATTGGAT+TGG | - | Chr4:62703882-62703901 | MsG0480021670.01.T01:intron | 30.0% | |
ATGTCATGCAAATTAATGCA+TGG | + | Chr4:62704857-62704876 | None:intergenic | 30.0% | |
CATAAAACAGAGATTGGATT+GGG | - | Chr4:62703883-62703902 | MsG0480021670.01.T01:intron | 30.0% | |
CATATCTAATTGCTAATGGT+GGG | - | Chr4:62704423-62704442 | MsG0480021670.01.T01:intron | 30.0% | |
CATGAAACGTAGTAATTTCA+AGG | - | Chr4:62704155-62704174 | MsG0480021670.01.T01:CDS | 30.0% | |
CTAATATACGTGTTTGCATT+TGG | - | Chr4:62703858-62703877 | MsG0480021670.01.T01:intron | 30.0% | |
GAATGATTGTGGAATCTTAT+GGG | - | Chr4:62704342-62704361 | MsG0480021670.01.T01:CDS | 30.0% | |
GTTATATTCTTCTTCGACAA+GGG | - | Chr4:62703943-62703962 | MsG0480021670.01.T01:intron | 30.0% | |
TACATTTATACCAGTATGCA+TGG | - | Chr4:62704628-62704647 | MsG0480021670.01.T01:intron | 30.0% | |
TATCATTATGTGGTTGTGTA+GGG | - | Chr4:62704263-62704282 | MsG0480021670.01.T01:intron | 30.0% | |
TCATATCTAATTGCTAATGG+TGG | - | Chr4:62704422-62704441 | MsG0480021670.01.T01:intron | 30.0% | |
TCTGTCAAGTGATTATTGAA+TGG | - | Chr4:62704769-62704788 | MsG0480021670.01.T01:intron | 30.0% | |
TCTTGATTCTTATATTGGGA+TGG | - | Chr4:62704309-62704328 | MsG0480021670.01.T01:intron | 30.0% | |
TGAACACAAAATGAAAGAGT+GGG | + | Chr4:62704200-62704219 | None:intergenic | 30.0% | |
TGATTTGAGAGATGAAACAA+AGG | + | Chr4:62704075-62704094 | None:intergenic | 30.0% | |
TTATCATTATGTGGTTGTGT+AGG | - | Chr4:62704262-62704281 | MsG0480021670.01.T01:intron | 30.0% | |
TTGAACACAAAATGAAAGAG+TGG | + | Chr4:62704201-62704220 | None:intergenic | 30.0% | |
TTGCTTACAGATCGAATATA+TGG | + | Chr4:62704530-62704549 | None:intergenic | 30.0% | |
TTGGAACATAAAACAGAGAT+TGG | - | Chr4:62703877-62703896 | MsG0480021670.01.T01:intron | 30.0% | |
! | GGTATATTTTTCTCATTCCT+TGG | - | Chr4:62703919-62703938 | MsG0480021670.01.T01:intron | 30.0% |
ACGTTTCATGAAGAATTGCA+TGG | + | Chr4:62704145-62704164 | None:intergenic | 35.0% | |
ATCATTATGTGGTTGTGTAG+GGG | - | Chr4:62704264-62704283 | MsG0480021670.01.T01:intron | 35.0% | |
CACGTCAACTTATCATTATG+TGG | - | Chr4:62704253-62704272 | MsG0480021670.01.T01:intron | 35.0% | |
CGTTATATTCTTCTTCGACA+AGG | - | Chr4:62703942-62703961 | MsG0480021670.01.T01:intron | 35.0% | |
GCATGGTACCACATAATTAA+TGG | - | Chr4:62704645-62704664 | MsG0480021670.01.T01:intron | 35.0% | |
GGAATGATTGTGGAATCTTA+TGG | - | Chr4:62704341-62704360 | MsG0480021670.01.T01:CDS | 35.0% | |
TCAAGTGATTATTGAATGGC+AGG | - | Chr4:62704773-62704792 | MsG0480021670.01.T01:intron | 35.0% | |
TCCACAATCATTCCCAAAAT+AGG | + | Chr4:62704335-62704354 | None:intergenic | 35.0% | |
TTACAGATAGGACAAGTAGA+TGG | + | Chr4:62703771-62703790 | None:intergenic | 35.0% | |
TTTCATGAAGAATTGCATGG+TGG | + | Chr4:62704142-62704161 | None:intergenic | 35.0% | |
! | AATCAGATCCTCTTTGTTTC+TGG | - | Chr4:62704090-62704109 | MsG0480021670.01.T01:intron | 35.0% |
! | ATATTGGGATGGCCTATTTT+GGG | - | Chr4:62704320-62704339 | MsG0480021670.01.T01:intron | 35.0% |
! | CACATAATGATAAGTTGACG+TGG | + | Chr4:62704255-62704274 | None:intergenic | 35.0% |
! | TATATTGGGATGGCCTATTT+TGG | - | Chr4:62704319-62704338 | MsG0480021670.01.T01:intron | 35.0% |
! | TTATATTTTGCAGTGGCTTC+TGG | - | Chr4:62704447-62704466 | MsG0480021670.01.T01:intron | 35.0% |
! | TTTTCTCTGATCTTCTTTCG+TGG | - | Chr4:62704221-62704240 | MsG0480021670.01.T01:intron | 35.0% |
CGAAGAAGAATATAACGCCA+AGG | + | Chr4:62703939-62703958 | None:intergenic | 40.0% | |
CTTGCGATCATTCATCTCAA+AGG | + | Chr4:62703552-62703571 | None:intergenic | 40.0% | |
TGAACAAACCAACCAAGAAC+AGG | + | Chr4:62704503-62704522 | None:intergenic | 40.0% | |
TGCAAGAAAACTGACAGTGT+AGG | + | Chr4:62704473-62704492 | None:intergenic | 40.0% | |
TTATGTGGTACCATGCATAC+TGG | + | Chr4:62704641-62704660 | None:intergenic | 40.0% | |
! | AACAAAACCTGAAGAGTACG+AGG | + | Chr4:62704370-62704389 | None:intergenic | 40.0% |
! | GAGATTGGATTGGGATTAAC+AGG | - | Chr4:62703892-62703911 | MsG0480021670.01.T01:intron | 40.0% |
! | GGTGGGATTATATTTTGCAG+TGG | - | Chr4:62704440-62704459 | MsG0480021670.01.T01:intron | 40.0% |
!! | GCCTATTTTGGGAATGATTG+TGG | - | Chr4:62704331-62704350 | MsG0480021670.01.T01:CDS | 40.0% |
AGAGGATTCCTGTTCTTGGT+TGG | - | Chr4:62704492-62704511 | MsG0480021670.01.T01:intron | 45.0% | |
ATTGCAGCTGTGACAGATTG+TGG | - | Chr4:62704690-62704709 | MsG0480021670.01.T01:intron | 45.0% | |
GGATTGGGATTAACAGGCTT+TGG | - | Chr4:62703898-62703917 | MsG0480021670.01.T01:intron | 45.0% | |
GGATTTCAGTCCAATGGTCA+GGG | + | Chr4:62704121-62704140 | None:intergenic | 45.0% | |
GGGATACTCCAGAAACAAAG+AGG | + | Chr4:62704101-62704120 | None:intergenic | 45.0% | |
TGGATTTCAGTCCAATGGTC+AGG | + | Chr4:62704122-62704141 | None:intergenic | 45.0% | |
TGTAGGGGACAGTCTCATTT+GGG | - | Chr4:62704279-62704298 | MsG0480021670.01.T01:intron | 45.0% | |
TGTTTGAACGCTATCGAGGT+AGG | - | Chr4:62704918-62704937 | MsG0480021670.01.T01:intron | 45.0% | |
TTGCAGAGGATTCCTGTTCT+TGG | - | Chr4:62704488-62704507 | MsG0480021670.01.T01:intron | 45.0% | |
TTGCAGCTGTGACAGATTGT+GGG | - | Chr4:62704691-62704710 | MsG0480021670.01.T01:intron | 45.0% | |
! | CACTGTCAGTTTTCTTGCAG+AGG | - | Chr4:62704474-62704493 | MsG0480021670.01.T01:intron | 45.0% |
!! | CATGGTGGATTTCAGTCCAA+TGG | + | Chr4:62704127-62704146 | None:intergenic | 45.0% |
!! | GACAAGGGTTTGCTAGCAAT+GGG | - | Chr4:62703958-62703977 | MsG0480021670.01.T01:CDS | 45.0% |
ATGGGTTCCTCGTACTCTTC+AGG | - | Chr4:62704360-62704379 | MsG0480021670.01.T01:CDS | 50.0% | |
CAGCTGCATGTCGACAGAAA+AGG | + | Chr4:62704900-62704919 | None:intergenic | 50.0% | |
CAGCTGTTTGAACGCTATCG+AGG | - | Chr4:62704914-62704933 | MsG0480021670.01.T01:intron | 50.0% | |
GTGTAGGGGACAGTCTCATT+TGG | - | Chr4:62704278-62704297 | MsG0480021670.01.T01:intron | 50.0% | |
TGCAGCTGTGACAGATTGTG+GGG | - | Chr4:62704692-62704711 | MsG0480021670.01.T01:intron | 50.0% | |
TTGAACGCTATCGAGGTAGG+CGG | - | Chr4:62704921-62704940 | MsG0480021670.01.T01:intron | 50.0% | |
! | GGGACAGTCTCATTTGGGAT+AGG | - | Chr4:62704284-62704303 | MsG0480021670.01.T01:intron | 50.0% |
! | TCTGGAGTATCCCTGACCAT+TGG | - | Chr4:62704108-62704127 | MsG0480021670.01.T01:intron | 50.0% |
!! | CGACAAGGGTTTGCTAGCAA+TGG | - | Chr4:62703957-62703976 | MsG0480021670.01.T01:CDS | 50.0% |
GCAGCTGTGACAGATTGTGG+GGG | - | Chr4:62704693-62704712 | MsG0480021670.01.T01:intron | 55.0% | |
TGAACGCTATCGAGGTAGGC+GGG | - | Chr4:62704922-62704941 | MsG0480021670.01.T01:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 62703542 | 62704955 | 62703542 | ID=MsG0480021670.01;Name=MsG0480021670.01 |
Chr4 | mRNA | 62703542 | 62704955 | 62703542 | ID=MsG0480021670.01.T01;Parent=MsG0480021670.01;Name=MsG0480021670.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|0.2|0.33|6|0|140 |
Chr4 | exon | 62704925 | 62704955 | 62704925 | ID=MsG0480021670.01.T01:exon:1851;Parent=MsG0480021670.01.T01 |
Chr4 | exon | 62704513 | 62704604 | 62704513 | ID=MsG0480021670.01.T01:exon:1850;Parent=MsG0480021670.01.T01 |
Chr4 | exon | 62704321 | 62704401 | 62704321 | ID=MsG0480021670.01.T01:exon:1849;Parent=MsG0480021670.01.T01 |
Chr4 | exon | 62704116 | 62704213 | 62704116 | ID=MsG0480021670.01.T01:exon:1848;Parent=MsG0480021670.01.T01 |
Chr4 | exon | 62703956 | 62704037 | 62703956 | ID=MsG0480021670.01.T01:exon:1847;Parent=MsG0480021670.01.T01 |
Chr4 | exon | 62703542 | 62703580 | 62703542 | ID=MsG0480021670.01.T01:exon:1846;Parent=MsG0480021670.01.T01 |
Chr4 | CDS | 62704925 | 62704955 | 62704925 | ID=MsG0480021670.01.T01:cds;Parent=MsG0480021670.01.T01 |
Chr4 | CDS | 62704513 | 62704604 | 62704513 | ID=MsG0480021670.01.T01:cds;Parent=MsG0480021670.01.T01 |
Chr4 | CDS | 62704321 | 62704401 | 62704321 | ID=MsG0480021670.01.T01:cds;Parent=MsG0480021670.01.T01 |
Chr4 | CDS | 62704116 | 62704213 | 62704116 | ID=MsG0480021670.01.T01:cds;Parent=MsG0480021670.01.T01 |
Chr4 | CDS | 62703956 | 62704037 | 62703956 | ID=MsG0480021670.01.T01:cds;Parent=MsG0480021670.01.T01 |
Chr4 | CDS | 62703542 | 62703580 | 62703542 | ID=MsG0480021670.01.T01:cds;Parent=MsG0480021670.01.T01 |
Gene Sequence |
Protein sequence |