AlfalfaGEDB | MsG0480021792.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021792.01

KEGG: -
GO: GO:0004553 GO:0005975
PFAM: PF00332

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021792.01.T01	XP_024636463.1	91.623	191	16	0	68	258	176	366	2.69E-124	368

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021792.01.T01	P52398	60.116	173	67	1	68	238	148	320	4.49E-71	224

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021792.01.T01	A0A396I7R6	91.623	191	16	0	68	258	176	366	1.28e-124	368

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380012583.01	MsG0480021792.01	0.824124	9.565018e-54	8.396774e-51
MsG0480021792.01	MsG0480021793.01	0.898647	4.322051e-77	5.154190e-73
MsG0480021792.01	MsG0580027348.01	0.818612	1.789656e-52	1.346010e-49

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021792.01.T01	MTR_4g076490	91.623	191	16	0	68	258	231	421	1.71e-127	368
MsG0480021792.01.T01	MTR_4g076470	70.388	206	60	1	34	239	123	327	4.40e-100	295
MsG0480021792.01.T01	MTR_4g076440	81.395	172	31	1	68	239	157	327	4.69e-100	295
MsG0480021792.01.T01	MTR_4g076430	80.814	172	32	1	68	239	157	327	1.86e-97	288
MsG0480021792.01.T01	MTR_4g076255	72.093	172	48	0	68	239	158	329	5.54e-90	270
MsG0480021792.01.T01	MTR_4g076500	72.674	172	44	2	68	236	214	385	9.51e-82	250
MsG0480021792.01.T01	MTR_4g076570	54.211	190	83	1	62	247	152	341	4.14e-66	209
MsG0480021792.01.T01	MTR_1g052430	55.914	186	72	2	62	240	162	344	3.32e-65	208
MsG0480021792.01.T01	MTR_2g034480	56.069	173	70	3	68	236	165	335	5.17e-57	186
MsG0480021792.01.T01	MTR_2g034470	48.259	201	97	4	62	258	127	324	3.04e-55	181

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021792.01.T01	AT4G16260	51.934	181	80	3	68	242	128	307	3.36e-59	190
MsG0480021792.01.T01	AT3G57260	55.882	170	70	3	73	238	184	352	3.92e-59	191
MsG0480021792.01.T01	AT3G57260	55.882	170	70	3	73	238	168	336	4.07e-59	191
MsG0480021792.01.T01	AT4G16260	51.934	181	80	3	68	242	157	336	6.35e-59	191
MsG0480021792.01.T01	AT3G57240	54.913	173	70	2	72	238	168	338	1.02e-58	190
MsG0480021792.01.T01	AT3G57270	52.601	173	77	2	71	238	165	337	9.80e-55	179
MsG0480021792.01.T01	AT5G56590	40.437	183	98	3	71	242	166	348	4.89e-44	155
MsG0480021792.01.T01	AT2G05790	43.889	180	90	4	70	238	163	342	1.08e-43	154
MsG0480021792.01.T01	AT5G55180	43.011	186	95	5	68	242	163	348	3.16e-43	152
MsG0480021792.01.T01	AT5G55180	40.594	202	109	5	68	258	163	364	3.62e-43	152

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

Find 57 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACCATGTGGCACAGTC+GGG	0.556287	4:+64325758	MsG0480021792.01.T01:CDS
AAATATAAACAGAGGCAATT+TGG	0.302939	4:+64325239	MsG0480021792.01.T01:intron
AACAAGGAAACAATGCAGTT+GGG	0.544475	4:+64325435	MsG0480021792.01.T01:CDS
AAGACGGGAGAAGAACTACT+TGG	0.611724	4:+64323626	MsG0480021792.01.T01:CDS
AAGATAGTTGTGTCCGAGAG+TGG	0.586296	4:+64325530	MsG0480021792.01.T01:CDS
AATCTAACATGGCGTCAAAG+AGG	0.650822	4:-64325466	None:intergenic
AATGGCACTCCTATGAGGCC+CGG	0.577050	4:+64325632	MsG0480021792.01.T01:CDS
AATTCATATCCACCCAATGA+TGG	0.515028	4:+64325263	MsG0480021792.01.T01:CDS
AGAAATGCCTTGTTTATTGC+TGG	0.349560	4:-64325390	None:intergenic
AGAGAAGTACGGATACACAT+TGG	0.664741	4:-64325363	None:intergenic

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTAACTTCCTAGTGAAGAA+TGG	+	Chr4:64325326-64325345	MsG0480021792.01.T01:CDS	30.0%
CCATTAACCCATTTACTATT+TGG	-	Chr4:64324522-64324541	None:intergenic	30.0%
CTTACTAAAATAAAACCCAG+TGG	-	Chr4:64324434-64324453	None:intergenic	30.0%
GTAGAGAATGTGTTTGATTA+AGG	+	Chr4:64323963-64323982	MsG0480021792.01.T01:intron	30.0%
GTGGGAAAAAATTATAGTGA+AGG	-	Chr4:64324415-64324434	None:intergenic	30.0%
TAGGGAAATAGAATAGCTTA+TGG	-	Chr4:64324573-64324592	None:intergenic	30.0%
TATTTGTCAAATCCTCATCA+TGG	+	Chr4:64323818-64323837	MsG0480021792.01.T01:intron	30.0%
TCTTATACCAGCAATAAACA+AGG	+	Chr4:64325383-64325402	MsG0480021792.01.T01:CDS	30.0%
TGGATGTCCAAATAGTAAAT+GGG	+	Chr4:64324512-64324531	MsG0480021792.01.T01:intron	30.0%
TTGATCAATCACATCAAGAA+TGG	+	Chr4:64325614-64325633	MsG0480021792.01.T01:CDS	30.0%

Showing 1 to 10 of 142 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	64323596	64325832	64323596	ID=MsG0480021792.01;Name=MsG0480021792.01
Chr4	mRNA	64323596	64325832	64323596	ID=MsG0480021792.01.T01;Parent=MsG0480021792.01;Name=MsG0480021792.01.T01;_AED=0.38;_eAED=0.38;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|258
Chr4	exon	64323596	64323790	64323596	ID=MsG0480021792.01.T01:exon:7762;Parent=MsG0480021792.01.T01
Chr4	exon	64325251	64325832	64325251	ID=MsG0480021792.01.T01:exon:7763;Parent=MsG0480021792.01.T01
Chr4	CDS	64323596	64323790	64323596	ID=MsG0480021792.01.T01:cds;Parent=MsG0480021792.01.T01
Chr4	CDS	64325251	64325832	64325251	ID=MsG0480021792.01.T01:cds;Parent=MsG0480021792.01.T01

Gene Sequence

>MsG0480021792.01.T01

ATGTGGAAAAAGATCCTTTCAGACCTCAAGAAGACGGGAGAAGAACTACTTGGTCCTGAAGTACCATATCTCAATGCAATAGAAGCATTGATGTATCTTGCTAATTATACACGTACTGATATATCATTTTCTGTCAATTTATTATCAAGATATAGTTCTTCACCTACACGAAGACATTGGAATGGAGTTAAACATAGGCAATTTGGTAATTCATATCCACCCAATGATGGAGCTTTCACTGACCAAGCAAATTCATATATACGACCAATAATTAACTTCCTAGTGAAGAATGGAGCACCACTTCTTGCCAATGTGTATCCGTACTTCTCTTATACCAGCAATAAACAAGGCATTTCTCTTGATTATGCTCTTTTTAGACAACAAGGAAACAATGCAGTTGGGTACAACAACCTCTTTGACGCCATGTTAGATTCGGTATACGCTGCTCTCGAGAAAGTTGGAGGTTCCAATGTGAAGATAGTTGTGTCCGAGAGTGGATGGCCGTCTAAAGGAGGAGATAGTGCCTCATTTGACAATGCTGCCACATATTATTCTAATTTGATCAATCACATCAAGAATGGCACTCCTATGAGGCCCGGTGCTGCTATTGAAACTTACTTGTTTGCCATGTTTGATGAAAATCAGAAGACTGGTCTAGCAACTGAACAACACTATGGTCTCTTTAATCCTGACAAATCACCTAAATACCATGTGGCACAGTCGGGTATCGAGTTGGATACAACAAGGAACATTACTGTCATCTTAAATATGAAATAG

Protein sequence

>MsG0480021792.01.T01

MWKKILSDLKKTGEELLGPEVPYLNAIEALMYLANYTRTDISFSVNLLSRYSSSPTRRHWNGVKHRQFGNSYPPNDGAFTDQANSYIRPIINFLVKNGAPLLANVYPYFSYTSNKQGISLDYALFRQQGNNAVGYNNLFDAMLDSVYAALEKVGGSNVKIVVSESGWPSKGGDSASFDNAATYYSNLINHIKNGTPMRPGAAIETYLFAMFDENQKTGLATEQHYGLFNPDKSPKYHVAQSGIELDTTRNITVILNMK*