AlfalfaGEDB | MsG0480021846.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021846.01

KEGG: K01874
GO: GO:0000049 GO:0000166 GO:0004812 GO:0005524 GO:0006418
PFAM: PF01588 PF09334

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021846.01.T01	XP_003607408.1	69.369	777	112	16	6	666	40	806	0	983

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021846.01.T01	Q9SVN5	45.34	794	264	19	6	666	41	797	0	588

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021846.01.T01	G7JSP8	69.369	777	112	16	6	666	40	806	0.0	983

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004577.01	MsG0480021846.01	0.838573	2.654194e-57	3.569728e-54
MsG0280007419.01	MsG0480021846.01	0.806432	8.251661e-50	4.477992e-47
MsG0280010566.01	MsG0480021846.01	0.802121	6.518783e-49	3.167488e-46
MsG0380015371.01	MsG0480021846.01	0.869595	2.753379e-66	1.039094e-62
MsG0380016850.01	MsG0480021846.01	0.821194	4.597151e-53	3.714925e-50
MsG0480021846.01	MsG0680035602.01	0.829107	6.194108e-55	6.277926e-52
MsG0480021846.01	MsG0780039497.01	0.802068	6.686920e-49	3.244807e-46
MsG0480021846.01	MsG0880046445.01	0.802370	5.794527e-49	2.833677e-46
MsG0480021846.01	MsG0880046906.01	0.804520	2.076660e-49	1.072953e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021846.01.T01	MTR_4g077700	69.369	777	112	16	6	666	40	806	0.0	983
MsG0480021846.01.T01	MTR_4g122580	56.450	783	196	17	6	666	40	799	0.0	814
MsG0480021846.01.T01	MTR_4g122620	41.916	167	53	6	61	215	13	147	7.02e-29	114
MsG0480021846.01.T01	MTR_3g093870	38.983	177	75	7	512	666	223	388	3.53e-21	96.7
MsG0480021846.01.T01	MTR_4g040350	34.831	178	70	6	520	665	93	256	3.22e-12	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021846.01.T01	AT4G13780	45.340	794	264	19	6	666	41	797	0.0	588
MsG0480021846.01.T01	AT2G40660	40.341	176	68	7	515	666	227	389	2.16e-21	97.4
MsG0480021846.01.T01	AT3G59980	34.637	179	77	7	516	665	105	272	7.76e-13	69.7

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Find 169 sgRNAs with CRISPR-Local

Find 835 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCAATGAGCATATC+TGG	0.367625	4:-65074044	MsG0480021846.01.T01:CDS
AAAGCCATTGTTCAGGGAGC+TGG	0.479693	4:-65073270	MsG0480021846.01.T01:intron
AAATTAAAATTTAATCAAGA+TGG	0.442164	4:+65070742	None:intergenic
AACAAATTCATGGTTCAAAA+TGG	0.185409	4:-65080142	MsG0480021846.01.T01:CDS
AACACCAAAGCCATTGTTCA+GGG	0.498027	4:-65073276	MsG0480021846.01.T01:CDS
AACCAGAAATTACCATCACA+AGG	0.669041	4:-65072222	MsG0480021846.01.T01:CDS
AACCGCCAGTTCTGCTCTTG+TGG	0.447974	4:-65071167	MsG0480021846.01.T01:CDS
AACTAAAACCAGCAACCATG+AGG	0.635333	4:-65071929	MsG0480021846.01.T01:CDS
AAGCAGCAAGAACCATTGCT+TGG	0.484906	4:+65071895	None:intergenic
AATATAAGCTTTGATGAATT+TGG	0.147482	4:-65081604	MsG0480021846.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGCAATGAGCATATC+TGG	-	Chr4:65079353-65079372	MsG0480021846.01.T01:intron	30.0%
AAACACTGAACTACAAGAAA+TGG	+	Chr4:65071648-65071667	None:intergenic	30.0%
AAAGGGAAAACAAAATTGCA+AGG	+	Chr4:65072671-65072690	None:intergenic	30.0%
AAATATTTGGCTGTTTAGAG+TGG	+	Chr4:65076550-65076569	None:intergenic	30.0%
AAATGTGTGTACTAATTGCT+TGG	+	Chr4:65075667-65075686	None:intergenic	30.0%
AACAGGTGTAATAATATCCT+TGG	+	Chr4:65071675-65071694	None:intergenic	30.0%
AACGGATAAATGAACTTTCA+AGG	-	Chr4:65081048-65081067	MsG0480021846.01.T01:intron	30.0%
AACTTACTTGAGTCTAAACA+AGG	+	Chr4:65081023-65081042	None:intergenic	30.0%
AATACTTGTCACAAATCTCT+TGG	+	Chr4:65070805-65070824	None:intergenic	30.0%
AATCATTTCCCTTACAACTA+GGG	-	Chr4:65081557-65081576	MsG0480021846.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	65070664	65082755	65070664	ID=MsG0480021846.01;Name=MsG0480021846.01
Chr4	mRNA	65070664	65082755	65070664	ID=MsG0480021846.01.T01;Parent=MsG0480021846.01;Name=MsG0480021846.01.T01;_AED=0.50;_eAED=0.52;_QI=0\|0.42\|0.6\|0.93\|1\|1\|15\|310\|666
Chr4	exon	65070664	65071202	65070664	ID=MsG0480021846.01.T01:exon:20598;Parent=MsG0480021846.01.T01
Chr4	exon	65071759	65071792	65071759	ID=MsG0480021846.01.T01:exon:20597;Parent=MsG0480021846.01.T01
Chr4	exon	65071877	65071975	65071877	ID=MsG0480021846.01.T01:exon:20596;Parent=MsG0480021846.01.T01
Chr4	exon	65072140	65072313	65072140	ID=MsG0480021846.01.T01:exon:20595;Parent=MsG0480021846.01.T01
Chr4	exon	65073063	65073129	65073063	ID=MsG0480021846.01.T01:exon:20594;Parent=MsG0480021846.01.T01
Chr4	exon	65073271	65073414	65073271	ID=MsG0480021846.01.T01:exon:20593;Parent=MsG0480021846.01.T01
Chr4	exon	65073786	65073914	65073786	ID=MsG0480021846.01.T01:exon:20592;Parent=MsG0480021846.01.T01
Chr4	exon	65074022	65074087	65074022	ID=MsG0480021846.01.T01:exon:20591;Parent=MsG0480021846.01.T01
Chr4	exon	65074928	65075055	65074928	ID=MsG0480021846.01.T01:exon:20590;Parent=MsG0480021846.01.T01
Chr4	exon	65076141	65076346	65076141	ID=MsG0480021846.01.T01:exon:20589;Parent=MsG0480021846.01.T01
Chr4	exon	65079846	65079937	65079846	ID=MsG0480021846.01.T01:exon:20588;Parent=MsG0480021846.01.T01
Chr4	exon	65080068	65080298	65080068	ID=MsG0480021846.01.T01:exon:20587;Parent=MsG0480021846.01.T01
Chr4	exon	65081192	65081347	65081192	ID=MsG0480021846.01.T01:exon:20586;Parent=MsG0480021846.01.T01
Chr4	exon	65081510	65081663	65081510	ID=MsG0480021846.01.T01:exon:20585;Parent=MsG0480021846.01.T01
Chr4	exon	65082664	65082755	65082664	ID=MsG0480021846.01.T01:exon:20584;Parent=MsG0480021846.01.T01
Chr4	CDS	65082664	65082755	65082664	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65081510	65081663	65081510	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65081192	65081347	65081192	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65080068	65080298	65080068	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65079846	65079937	65079846	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65076141	65076346	65076141	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65074928	65075055	65074928	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65074022	65074087	65074022	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65073786	65073914	65073786	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65073271	65073414	65073271	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65073063	65073129	65073063	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65072140	65072313	65072140	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65071877	65071975	65071877	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65071759	65071792	65071759	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	CDS	65070974	65071202	65070974	ID=MsG0480021846.01.T01:cds;Parent=MsG0480021846.01.T01
Chr4	three_prime_UTR	65070664	65070973	65070664	ID=MsG0480021846.01.T01:three_prime_utr;Parent=MsG0480021846.01.T01

Gene Sequence

>MsG0480021846.01.T01

ATGTTACGATCAGGTGTGTTGAGTGCGGATGTATTTGCTCGATATTGTCGTCTTAGGGGTTACAATGCGATTTACATCTGCGGTACCGATGAATACCATGCTATTCACAAGGAGGTCTACGATTGGTTCAATATAAGCTTTGATGAATTTGGACGCACTTCTTCCCCTGAGCAAACTGAAGTGTGCCAAGCAATTTTCAAAAAAGTACACGAAAATAATTGGCTCTCTGAGGACACATTACAGCAGCTTTACTGCGATACATGCAAAAGGTTCTTAGCCGATCGACTTGTGGAGGGTACCTGCCCAATTCCAGGGTGTGAGTATGATTCTGCCAGAGGGGATCAGTGTGAGAACTGTGGCAACCTTCTAAATCCGACAGAATTGAAGATTCCCAAGTGCAAGGTTTGTCGAAATAGTCCTCGTATTTGTGATACGGACCACTTATTTCTTGAGCTCCCTCTTTTGGAAGATAAGTTGCAAAAATACATCAATGAGATGTCTGTGGTGGGATCATGGAGTCAGAATGCTATTCAAACAACAAATTCATGGTTCAAAATGGGATTAAAAAAACGTTGCATTACCAGAGATCTGAAGTGGGGGGTTCCTGTTCCACATGAAAAATACAGTGACAAGGCTACACACGTGATTGGGAGAAATGGTGAAAAAACCCTGAGAATGTGGAGTTGTTTCAGTTTATGGGAAAGGATAATGTGCCATTCCATACTTGTTAGGAATCTTGGTGTAGCAGCTATTTGCTCAGTGAAGTTTATTAAAACAAAAGCAACTAGAACTAGCTTTTCGATTCTTAATAAAGTGGAAAATGATGGAATTTATTCTTCAGGTAATGTTTCCATCTACTCTACTTGGAACTGGTCAAAATTGGACTTAATGAAGACTATCAGTGTCACCGAATACCTGAATTATGAAGCAGGTCAAGGATATGATTCCATTATTCCCACTGTTCCTGATGATGTAAGTGGCGACTCCCATGATCCAACCAAAAAATTTGCCAACAAAGTTGCTGCATATATGGAGCAATACATAGAGTCAATGGAGAAGGTTAAACTAAAGCAAGGATTGAAAATTGCAATGAGCATATCTGGTGAGGGGAATGCATATTTGCAGGAAACTGAGTTTTGGCGTCTTTACAAGCAAAACCAATCTCTCTGCTCCCTTGTTATGAAAACTGCTGCCGGGATTGTGTATCTTCTTGCTTGTTTGTTGGAACCTTTTATGCCATCTTTCAGTCTTGAGGTATTCAAGCAACTAAATTTGTCTGTGGACACGCATCTTTCACTTTCTGATGATAAAGGAGACGTTGATAGAGTAAAAAGACCCTGGGATCTTGTAAGTGCCGGTCATAAAATTGGAACACCAAAGCCATTGTTCAGGGAGCTGGGTTGTTCGTGCAGAGGCGAAGCTGCTGAAAATGTTGCTGAGCAATTGAAGAAAACTAAAGTTTCAGATGGAACTGAGAAGAAAAAACCAGCAGCAAAAGCATCATCAAGTGGAGCCAAAAACAAGGCTGCTGCTGAACCAGAAATTACCATCACAAGGCTTGATATTCGAGTTGGTCTCATAAAGAAGGCTGAAAAGCATCCTGATGCAGATTCACTGTATGTTGAAGAGATTGATGTCGAATCGAAAGGTCTGTGTTCTTTGCAACTAAAACCAGCAACCATGAGGGGCATCAAATCCCAAGCAATGGTTCTTGCTGCTTCAATGCTGATCACACATGGTATGAAGTATAGACGATTGTTGGAGCGACATGGGTTGAGTTGGTTGAACCGCCAGTTCTGCTCTTGTGGAGAAAGAATCACATTCCCGGGGTATGAAGGCAATCCAGATGAACTCTTGAATCCAAAGAAGAAAGTTTGGGAGACATTGCAAGCTGATCTGCACACGAATGAGAAGCTAGAGGCATGCTACAAAGACATTCCACTGACCACATCAGCTGGCATTTGCACGGTTCCATCCATAGGCAATGGGACGATACGGTAG

Protein sequence

>MsG0480021846.01.T01

MLRSGVLSADVFARYCRLRGYNAIYICGTDEYHAIHKEVYDWFNISFDEFGRTSSPEQTEVCQAIFKKVHENNWLSEDTLQQLYCDTCKRFLADRLVEGTCPIPGCEYDSARGDQCENCGNLLNPTELKIPKCKVCRNSPRICDTDHLFLELPLLEDKLQKYINEMSVVGSWSQNAIQTTNSWFKMGLKKRCITRDLKWGVPVPHEKYSDKATHVIGRNGEKTLRMWSCFSLWERIMCHSILVRNLGVAAICSVKFIKTKATRTSFSILNKVENDGIYSSGNVSIYSTWNWSKLDLMKTISVTEYLNYEAGQGYDSIIPTVPDDVSGDSHDPTKKFANKVAAYMEQYIESMEKVKLKQGLKIAMSISGEGNAYLQETEFWRLYKQNQSLCSLVMKTAAGIVYLLACLLEPFMPSFSLEVFKQLNLSVDTHLSLSDDKGDVDRVKRPWDLVSAGHKIGTPKPLFRELGCSCRGEAAENVAEQLKKTKVSDGTEKKKPAAKASSSGAKNKAAAEPEITITRLDIRVGLIKKAEKHPDADSLYVEEIDVESKGLCSLQLKPATMRGIKSQAMVLAASMLITHGMKYRRLLERHGLSWLNRQFCSCGERITFPGYEGNPDELLNPKKKVWETLQADLHTNEKLEACYKDIPLTTSAGICTVPSIGNGTIR*