AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022037.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022037.01.T01 MTR_4g081110 98.624 436 6 0 1 436 1 436 0.0 904
MsG0480022037.01.T01 MTR_2g083220 76.126 444 98 4 1 437 1 443 0.0 709
MsG0480022037.01.T01 MTR_1g069705 54.670 439 167 5 1 435 12 422 8.86e-177 501
MsG0480022037.01.T01 MTR_2g099185 46.114 193 101 2 151 343 340 529 1.91e-49 178
MsG0480022037.01.T01 MTR_2g099185 36.275 102 62 2 29 127 37 138 1.65e-11 66.6
MsG0480022037.01.T01 MTR_2g099185 46.199 171 91 1 151 321 340 509 2.80e-44 162
MsG0480022037.01.T01 MTR_2g099185 36.275 102 62 2 29 127 37 138 1.85e-11 66.2
MsG0480022037.01.T01 MTR_2g099185 45.977 174 93 1 151 324 345 517 4.43e-44 161
MsG0480022037.01.T01 MTR_2g099185 37.255 102 61 2 29 127 42 143 4.41e-12 68.2
MsG0480022037.01.T01 MTR_4g115090 30.342 234 113 4 184 415 434 619 1.35e-31 127
MsG0480022037.01.T01 MTR_3g092100 32.203 236 132 4 200 435 338 545 1.13e-30 124
MsG0480022037.01.T01 MTR_3g092100 35.507 138 72 4 28 163 64 186 5.42e-15 77.4
MsG0480022037.01.T01 MTR_1g007590 29.741 232 131 4 202 429 290 493 3.22e-29 119
MsG0480022037.01.T01 MTR_1g007590 29.741 232 131 4 202 429 385 588 5.00e-29 120
MsG0480022037.01.T01 MTR_1g007590 43.038 79 43 1 35 111 68 146 2.89e-14 75.1
MsG0480022037.01.T01 MTR_1g072400 56.140 57 25 0 196 252 47 103 6.81e-20 84.7
MsG0480022037.01.T01 MTR_3g083840 26.298 289 180 9 54 322 96 371 1.75e-19 90.5
MsG0480022037.01.T01 MTR_8g085300 27.682 289 176 9 54 322 107 382 4.37e-18 86.7
MsG0480022037.01.T01 MTR_5g065510 44.444 72 39 1 30 100 21 92 1.09e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022037.01.T01 AT4G27100 70.362 442 116 5 1 436 1 433 0.0 617
MsG0480022037.01.T01 AT4G27100 70.682 440 114 5 1 434 1 431 0.0 616
MsG0480022037.01.T01 AT5G54780 70.602 432 107 4 1 424 1 420 0.0 602
MsG0480022037.01.T01 AT2G20440 56.036 439 171 6 1 438 7 424 2.81e-180 510
MsG0480022037.01.T01 AT2G20440 56.036 439 171 6 1 438 7 424 2.81e-180 510
MsG0480022037.01.T01 AT4G28550 55.300 434 172 4 1 433 7 419 1.37e-177 503
MsG0480022037.01.T01 AT2G20440 58.951 324 112 4 1 322 7 311 8.09e-139 402
MsG0480022037.01.T01 AT4G28550 58.255 321 115 3 1 320 7 309 5.27e-137 397
MsG0480022037.01.T01 AT4G28550 58.075 322 116 3 1 321 7 310 2.46e-136 395
MsG0480022037.01.T01 AT2G20440 54.103 329 130 5 110 438 1 308 9.35e-124 362
MsG0480022037.01.T01 AT3G59570 34.743 331 169 4 151 435 336 665 1.98e-54 193
MsG0480022037.01.T01 AT3G59570 39.048 105 63 1 16 119 31 135 1.52e-15 79.3
MsG0480022037.01.T01 AT2G43490 52.410 166 78 1 166 331 347 511 1.15e-50 183
MsG0480022037.01.T01 AT2G43490 35.385 130 81 2 19 145 34 163 3.11e-16 81.6
MsG0480022037.01.T01 AT2G43490 52.410 166 78 1 166 331 347 511 1.15e-50 183
MsG0480022037.01.T01 AT2G43490 35.385 130 81 2 19 145 34 163 3.11e-16 81.6
MsG0480022037.01.T01 AT2G43490 52.410 166 78 1 166 331 347 511 1.15e-50 183
MsG0480022037.01.T01 AT2G43490 35.385 130 81 2 19 145 34 163 3.11e-16 81.6
MsG0480022037.01.T01 AT2G43490 52.410 166 78 1 166 331 347 511 1.15e-50 183
MsG0480022037.01.T01 AT2G43490 35.385 130 81 2 19 145 34 163 3.11e-16 81.6
MsG0480022037.01.T01 AT2G43490 52.410 166 78 1 166 331 343 507 1.27e-50 182
MsG0480022037.01.T01 AT2G43490 37.903 124 74 2 25 145 36 159 3.74e-17 84.3
MsG0480022037.01.T01 AT2G43490 52.410 166 78 1 166 331 343 507 1.27e-50 182
MsG0480022037.01.T01 AT2G43490 37.903 124 74 2 25 145 36 159 3.74e-17 84.3
MsG0480022037.01.T01 AT2G43490 52.410 166 78 1 166 331 347 511 1.37e-50 182
MsG0480022037.01.T01 AT2G43490 35.385 130 81 2 19 145 34 163 3.40e-16 81.6
MsG0480022037.01.T01 AT2G43490 52.410 166 78 1 166 331 347 511 1.74e-50 182
MsG0480022037.01.T01 AT2G43490 35.385 130 81 2 19 145 34 163 2.66e-16 82.0
MsG0480022037.01.T01 AT3G59570 48.876 178 90 1 151 328 336 512 6.37e-49 177
MsG0480022037.01.T01 AT3G59570 38.318 107 65 1 14 119 29 135 1.75e-15 79.3
MsG0480022037.01.T01 AT3G59570 48.876 178 90 1 151 328 336 512 1.13e-48 177
MsG0480022037.01.T01 AT3G59570 39.048 105 63 1 16 119 31 135 1.74e-15 79.3
MsG0480022037.01.T01 AT5G24390 29.124 388 178 9 28 324 56 437 1.88e-41 154
MsG0480022037.01.T01 AT5G52580 29.882 338 170 7 1 335 336 609 3.10e-39 150
MsG0480022037.01.T01 AT5G52580 30.263 304 153 6 35 335 345 592 1.99e-38 147
MsG0480022037.01.T01 AT5G52580 30.263 304 153 6 35 335 351 598 2.04e-38 147
MsG0480022037.01.T01 AT5G41940 31.797 217 120 3 202 418 345 533 1.67e-30 124
MsG0480022037.01.T01 AT5G41940 43.750 80 43 1 33 110 87 166 7.10e-14 73.9
MsG0480022037.01.T01 AT3G49350 28.814 236 140 4 202 437 330 537 3.20e-28 117
MsG0480022037.01.T01 AT5G53570 29.876 241 135 5 202 438 338 548 9.42e-28 116
MsG0480022037.01.T01 AT5G53570 40.698 86 48 2 34 117 95 179 1.03e-12 70.5
MsG0480022037.01.T01 AT5G53570 29.876 241 135 5 202 438 365 575 1.06e-27 116
MsG0480022037.01.T01 AT5G53570 40.698 86 48 2 34 117 122 206 1.02e-12 70.5
MsG0480022037.01.T01 AT1G04830 27.562 283 169 9 66 329 125 390 3.56e-20 92.8
MsG0480022037.01.T01 AT1G04830 27.562 283 169 9 66 329 125 390 5.29e-20 92.4
MsG0480022037.01.T01 AT4G13730 26.182 275 161 8 68 324 131 381 6.74e-19 89.0
MsG0480022037.01.T01 AT4G13730 26.132 287 175 8 68 333 131 401 7.88e-19 88.6
MsG0480022037.01.T01 AT4G13730 26.619 278 167 8 68 324 131 392 1.01e-18 88.6

Find 143 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGTTCCTCATAAAATT+TGG 0.141129 4:+67262563 MsG0480022037.01.T01:three_prime_UTR
AAGAGAATTTGTCAAAATTA+TGG 0.149953 4:+67260657 MsG0480022037.01.T01:CDS
ACCTTCTTTGCTGAATTATT+AGG 0.178371 4:-67260390 None:intergenic
AATGCCATATGCTATATTTA+AGG 0.205481 4:-67262474 None:intergenic
ATGATGAAGCTGATGCTTTC+TGG 0.239321 4:+67260926 MsG0480022037.01.T01:CDS
CCTGCATGGTGCCCTTTGTT+TGG 0.239538 4:+67262529 MsG0480022037.01.T01:three_prime_UTR
CTGCATGGTGCCCTTTGTTT+GGG 0.240958 4:+67262530 MsG0480022037.01.T01:three_prime_UTR
ATTCTCTCCGGAAGGGTATT+TGG 0.245895 4:+67259714 MsG0480022037.01.T01:CDS
AAATATGTGATATGACAAAA+AGG 0.246314 4:+67262747 MsG0480022037.01.T01:three_prime_UTR
CCTATATGTTGATGAAGTTT+TGG 0.247721 4:-67261298 None:intergenic
CCTTCTTTGCTGAATTATTA+GGG 0.257114 4:-67260389 None:intergenic
ATGTTCCCAAGTCTAGATTT+AGG 0.276545 4:+67259006 MsG0480022037.01.T01:CDS
TTAGAAAATAATCCAGAAAA+TGG 0.279307 4:+67260330 MsG0480022037.01.T01:CDS
AATATGATCCCAACATGTTT+TGG 0.285195 4:+67261904 MsG0480022037.01.T01:CDS
CATCAATTAGAGGAGAAGTT+TGG 0.289829 4:+67259979 MsG0480022037.01.T01:CDS
TTGTTTGGGGTAAACAATAT+TGG 0.291629 4:+67262544 MsG0480022037.01.T01:three_prime_UTR
TATTTAAGGCTACGGTTTCT+TGG 0.301464 4:-67262460 None:intergenic
AGAGACTCAACTAAACAATT+TGG 0.302514 4:+67261252 MsG0480022037.01.T01:CDS
CAAACTTCTCCTCTAATTGA+TGG 0.303432 4:-67259978 None:intergenic
TTCAAAGGGGTCCAGCTTCT+AGG 0.308744 4:+67258837 MsG0480022037.01.T01:five_prime_UTR
CTGTGATTCATTGTACCTTT+GGG 0.309545 4:+67261574 MsG0480022037.01.T01:CDS
AGAGAATTTGTCAAAATTAT+GGG 0.312562 4:+67260658 MsG0480022037.01.T01:CDS
AGCAACAAGGAAAATAGATA+TGG 0.322455 4:-67262054 None:intergenic
TCTGTGATTCATTGTACCTT+TGG 0.322700 4:+67261573 MsG0480022037.01.T01:CDS
CATCTAGGCCTCGTGCTTGC+TGG 0.325598 4:-67262109 None:intergenic
ATAACAAAAGAAAATTATAT+TGG 0.346405 4:-67262401 None:intergenic
TTTGCTGAATTATTAGGGCT+TGG 0.351259 4:-67260384 None:intergenic
CGCCAACTGTTTCCTCTTGT+AGG 0.353650 4:+67260237 MsG0480022037.01.T01:CDS
TTGGGAACATCGGTGCATTC+CGG 0.361184 4:-67258993 None:intergenic
TTAAAGTCAATACGTCATTA+TGG 0.362574 4:+67261972 MsG0480022037.01.T01:CDS
GGTATCCAGACAAGGTCAAT+AGG 0.363951 4:-67258756 None:intergenic
TGGGAACATCGGTGCATTCC+GGG 0.368119 4:-67258992 None:intergenic
CCTACCCTATTGACCTTGTC+TGG 0.377032 4:+67258751 MsG0480022037.01.T01:five_prime_UTR
CAGTTACCCCACGGTGGATT+CGG 0.379343 4:-67259756 None:intergenic
ATATCTTTATGCAAAATTAG+AGG 0.379689 4:-67258894 None:intergenic
ATCAATTAGAGGAGAAGTTT+GGG 0.387602 4:+67259980 MsG0480022037.01.T01:CDS
GAGAGAGAGAATATGAGAAA+TGG 0.394621 4:+67262002 MsG0480022037.01.T01:CDS
CCGGAAGGGTATTTGGATAT+AGG 0.401657 4:+67259721 MsG0480022037.01.T01:CDS
ATGTTAACTTTACATCAAAT+AGG 0.410473 4:+67260438 MsG0480022037.01.T01:CDS
GCTGCTCATCTAAGACTTGA+TGG 0.415108 4:-67262619 None:intergenic
TTCCTCATAAAATTTGGATT+GGG 0.416250 4:+67262569 MsG0480022037.01.T01:three_prime_UTR
TTTGGGATGTGGAGAGATCC+TGG 0.416941 4:+67258939 MsG0480022037.01.T01:exon
GTTCCTCATAAAATTTGGAT+TGG 0.419656 4:+67262568 MsG0480022037.01.T01:three_prime_UTR
CCAAAACTTCATCAACATAT+AGG 0.420780 4:+67261298 MsG0480022037.01.T01:CDS
AAGTTTCAACGCTGCCATAC+AGG 0.425576 4:-67262292 None:intergenic
GAGGAAATTGAAATCATTGC+AGG 0.428880 4:+67262437 MsG0480022037.01.T01:three_prime_UTR
CCTATATCCAAATACCCTTC+CGG 0.439848 4:-67259721 None:intergenic
CAGATATTGAATGACACAAA+TGG 0.447976 4:+67262249 MsG0480022037.01.T01:intron
GGAATCCATCCATCAATTAG+AGG 0.453920 4:+67259969 MsG0480022037.01.T01:CDS
CCCTAATAATTCAGCAAAGA+AGG 0.459539 4:+67260389 MsG0480022037.01.T01:CDS
ATATGCTATATTTAAGGCTA+CGG 0.459550 4:-67262468 None:intergenic
TTCATACATCCAAAACATGT+TGG 0.460780 4:-67261913 None:intergenic
TATATTCAGATAATGTGATC+AGG 0.461170 4:+67262361 MsG0480022037.01.T01:three_prime_UTR
TCATCGAGCAGTATTATCAT+AGG 0.464171 4:-67260907 None:intergenic
ATATTCTTGCTGTTTATGCT+AGG 0.472923 4:+67260681 MsG0480022037.01.T01:CDS
CAAGTCTAGATTTAGGATCA+AGG 0.473791 4:+67259013 MsG0480022037.01.T01:CDS
GGGGTCCAGCTTCTAGGTGC+TGG 0.474056 4:+67258843 MsG0480022037.01.T01:five_prime_UTR
TCATACATCCAAAACATGTT+GGG 0.474205 4:-67261912 None:intergenic
AACAGCCAGCACCTAGAAGC+TGG 0.480338 4:-67258848 None:intergenic
AAAGAATCAGCAGGAACTCC+AGG 0.484131 4:-67258957 None:intergenic
AAACCTTGACGACATCATCT+AGG 0.486549 4:-67262124 None:intergenic
GTAGCCTTAAATATAGCATA+TGG 0.488779 4:+67262470 MsG0480022037.01.T01:three_prime_UTR
CTGTTTCCTCTTGTAGGAAG+TGG 0.489158 4:+67260243 MsG0480022037.01.T01:CDS
AACATCGGTGCATTCCGGGC+GGG 0.494642 4:-67258988 None:intergenic
TGTTGGTGCACAGAGCATAT+TGG 0.495820 4:+67261488 MsG0480022037.01.T01:intron
GTTTGGTTGATCATTTCAAA+GGG 0.497587 4:+67258823 MsG0480022037.01.T01:five_prime_UTR
AAGAGATAAGGCAGCGCCGA+AGG 0.498624 4:+67260051 MsG0480022037.01.T01:CDS
TCAGGACGCAATATGCTGAA+TGG 0.508754 4:+67260202 MsG0480022037.01.T01:intron
CTTGATCCTAAATCTAGACT+TGG 0.511866 4:-67259012 None:intergenic
GAAGTATTTAACAGATGATG+TGG 0.512634 4:+67261874 MsG0480022037.01.T01:intron
TCTTTGATGAAGATTTCAAA+GGG 0.515396 4:-67258777 None:intergenic
AGAACCAATGGATCTTGAAT+CGG 0.519372 4:-67260306 None:intergenic
CTTCTCCTCTAATTGATGGA+TGG 0.520804 4:-67259974 None:intergenic
ATCAATTTCCTTGACACGGA+TGG 0.522541 4:-67262789 None:intergenic
GTATCCAGACAAGGTCAATA+GGG 0.523966 4:-67258755 None:intergenic
CGTGCTGCATTCTCTCCGGA+AGG 0.525549 4:+67259706 MsG0480022037.01.T01:CDS
TATTGTTTACCCCAAACAAA+GGG 0.527807 4:-67262540 None:intergenic
GTGGCGTGCTGCATTCTCTC+CGG 0.528842 4:+67259702 MsG0480022037.01.T01:CDS
AGGAAAATAGATATGGGAAG+AGG 0.531576 4:-67262047 None:intergenic
TCTTTCCTCGAATGTACTCG+TGG 0.533418 4:-67260027 None:intergenic
TGATTCATTGTACCTTTGGG+AGG 0.533545 4:+67261577 MsG0480022037.01.T01:CDS
GCAACAAGGAAAATAGATAT+GGG 0.536008 4:-67262053 None:intergenic
ATCTTTGATGAAGATTTCAA+AGG 0.536076 4:-67258778 None:intergenic
ATAGATAATGATGTTGGCTA+TGG 0.537992 4:+67260704 MsG0480022037.01.T01:CDS
AGTTTGGTTGATCATTTCAA+AGG 0.538003 4:+67258822 MsG0480022037.01.T01:five_prime_UTR
CTTTCCTCGAATGTACTCGT+GGG 0.538136 4:-67260026 None:intergenic
ATTGTACCTCCTCAAGAAGT+AGG 0.539196 4:+67260357 MsG0480022037.01.T01:CDS
CTTTCAACACACTAGCAACA+AGG 0.544712 4:-67262067 None:intergenic
CTCTAAGCCGAATCCACCGT+GGG 0.546784 4:+67259749 MsG0480022037.01.T01:CDS
GGGAATAACCATCCGTGTCA+AGG 0.549218 4:+67262781 MsG0480022037.01.T01:three_prime_UTR
AAGGGTATTTGGATATAGGC+AGG 0.550489 4:+67259725 MsG0480022037.01.T01:CDS
TCGAGGAAAGAGAAGAGATA+AGG 0.553975 4:+67260039 MsG0480022037.01.T01:CDS
GTAAAACACTAAGTGAAAGA+AGG 0.560988 4:+67259680 MsG0480022037.01.T01:CDS
GCTAGGATAGATAATGATGT+TGG 0.562217 4:+67260698 MsG0480022037.01.T01:CDS
CTTGGAGCACCTACTTCTTG+AGG 0.562938 4:-67260366 None:intergenic
ACACCATCGTCGGTAACTAC+AGG 0.563755 4:-67260282 None:intergenic
CCAAACAAAGGGCACCATGC+AGG 0.565529 4:-67262529 None:intergenic
TTCTTTCTATGAAACCCGCC+CGG 0.566250 4:+67258974 MsG0480022037.01.T01:CDS
TGAACCCACGAGTACATTCG+AGG 0.568758 4:+67260022 MsG0480022037.01.T01:CDS
CAACATCAATTTCCTTGACA+CGG 0.570577 4:-67262793 None:intergenic
AATGATGTTGGCTATGGTCA+AGG 0.579514 4:+67260710 MsG0480022037.01.T01:CDS
AGATGCACCAATAACAGTGT+GGG 0.581528 4:+67261226 MsG0480022037.01.T01:CDS
TGCATGGTGCCCTTTGTTTG+GGG 0.582758 4:+67262531 MsG0480022037.01.T01:three_prime_UTR
AATCTACCACTTCCTACAAG+AGG 0.583193 4:-67260249 None:intergenic
AAAATAGATATGGGAAGAGG+AGG 0.583193 4:-67262044 None:intergenic
TGTACCGATTCAAGATCCAT+TGG 0.585320 4:+67260302 MsG0480022037.01.T01:CDS
ATATTGTTTACCCCAAACAA+AGG 0.585568 4:-67262541 None:intergenic
TGAAATGATCAACCAAACTC+AGG 0.587375 4:-67258818 None:intergenic
GTATTATCATAGGAGAGCAT+AGG 0.593824 4:-67260897 None:intergenic
GACGCAATATGCTGAATGGA+AGG 0.594162 4:+67260206 MsG0480022037.01.T01:CDS
AGAATCTGAAGAAACTGCTG+AGG 0.595745 4:+67261935 MsG0480022037.01.T01:CDS
TTCCTACAAGAGGAAACAGT+TGG 0.598223 4:-67260239 None:intergenic
AAGTATTTAACAGATGATGT+GGG 0.607087 4:+67261875 MsG0480022037.01.T01:intron
GAACATCGGTGCATTCCGGG+CGG 0.608173 4:-67258989 None:intergenic
CCAGACAAGGTCAATAGGGT+AGG 0.609396 4:-67258751 None:intergenic
GTTTCATAGAAAGAATCAGC+AGG 0.611829 4:-67258966 None:intergenic
AAGGTACAATGAATCACAGA+AGG 0.616443 4:-67261570 None:intergenic
TTGATCCTAAATCTAGACTT+GGG 0.619284 4:-67259011 None:intergenic
GTAACACATCTCTTGATCAA+CGG 0.619655 4:-67262504 None:intergenic
GTGCTGCATTCTCTCCGGAA+GGG 0.622634 4:+67259707 MsG0480022037.01.T01:CDS
TGTTATCGATTCATTAGACG+AGG 0.624435 4:+67262418 MsG0480022037.01.T01:three_prime_UTR
AAATCTAGACTTGGGAACAT+CGG 0.624918 4:-67259003 None:intergenic
GATGCACCAATAACAGTGTG+GGG 0.632868 4:+67261227 MsG0480022037.01.T01:CDS
GATTCGTACCGATAGGACAC+TGG 0.634998 4:+67260619 MsG0480022037.01.T01:CDS
GAAGTTTGGGAATTTCTACT+CGG 0.636274 4:+67259993 MsG0480022037.01.T01:CDS
TGGTGCACAGAGCATATTGG+TGG 0.637467 4:+67261491 MsG0480022037.01.T01:intron
CAGATGCACCAATAACAGTG+TGG 0.638420 4:+67261225 MsG0480022037.01.T01:CDS
AGGCCTAGATGATGTCGTCA+AGG 0.647370 4:+67262121 MsG0480022037.01.T01:CDS
AAGCTAAGCTAACCTCCCAA+AGG 0.651555 4:-67261589 None:intergenic
TGCACAGAGCATATTGGTGG+AGG 0.655267 4:+67261494 MsG0480022037.01.T01:intron
TTTCAAAGGGTATCCAGACA+AGG 0.659055 4:-67258764 None:intergenic
GGAGCACCTACTTCTTGAGG+AGG 0.659262 4:-67260363 None:intergenic
AAACACTAAGTGAAAGAAGG+TGG 0.670093 4:+67259683 MsG0480022037.01.T01:CDS
ACACTACTCCAGCAAGCACG+AGG 0.678859 4:+67262101 MsG0480022037.01.T01:CDS
TTGAATCGGTACACCATCGT+CGG 0.682044 4:-67260292 None:intergenic
GAGATGTGTTACTTCCTGCA+TGG 0.687806 4:+67262515 MsG0480022037.01.T01:three_prime_UTR
ACTCTAAGCCGAATCCACCG+TGG 0.704771 4:+67259748 MsG0480022037.01.T01:CDS
TTGACGTGATTCGTACCGAT+AGG 0.705672 4:+67260612 MsG0480022037.01.T01:CDS
AAAATGCAGTTACCCCACGG+TGG 0.705798 4:-67259762 None:intergenic
ATGCACCAATAACAGTGTGG+GGG 0.708289 4:+67261228 MsG0480022037.01.T01:CDS
TTTGGTTGATCATTTCAAAG+GGG 0.709557 4:+67258824 MsG0480022037.01.T01:five_prime_UTR
GCACCTGTAGTTACCGACGA+TGG 0.722742 4:+67260279 MsG0480022037.01.T01:CDS
TCTAAGCCGAATCCACCGTG+GGG 0.782631 4:+67259750 MsG0480022037.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTATTTTTATTTTAAA+TGG + Chr4:67259224-67259243 MsG0480022037.01.T01:intron 0.0%
!! ATAACAAAAGAAAATTATAT+TGG - Chr4:67262404-67262423 None:intergenic 10.0%
!! GATTTATTTCATTATTAGTA+TGG + Chr4:67260994-67261013 MsG0480022037.01.T01:intron 15.0%
!! TATATTGTAACTTCTAATAA+TGG - Chr4:67259426-67259445 None:intergenic 15.0%
!! AAATATGTGATATGACAAAA+AGG + Chr4:67262747-67262766 MsG0480022037.01.T01:three_prime_UTR 20.0%
!! AAGAGAATTTGTCAAAATTA+TGG + Chr4:67260657-67260676 MsG0480022037.01.T01:CDS 20.0%
!! AATAAAGATCATAAGAAACA+AGG - Chr4:67261181-67261200 None:intergenic 20.0%
!! AATATGTGATATGACAAAAA+GGG + Chr4:67262748-67262767 MsG0480022037.01.T01:three_prime_UTR 20.0%
!! ACTATAAATTATTTCCAATG+AGG - Chr4:67261833-67261852 None:intergenic 20.0%
!! ACTTCATTTACATGTTAATT+AGG + Chr4:67259843-67259862 MsG0480022037.01.T01:intron 20.0%
!! AGAGAATTTGTCAAAATTAT+GGG + Chr4:67260658-67260677 MsG0480022037.01.T01:CDS 20.0%
!! ATATCTTTATGCAAAATTAG+AGG - Chr4:67258897-67258916 None:intergenic 20.0%
!! ATGTAAGACAAATTATTAGT+AGG - Chr4:67259929-67259948 None:intergenic 20.0%
!! ATGTTAACTTTACATCAAAT+AGG + Chr4:67260438-67260457 MsG0480022037.01.T01:CDS 20.0%
!! TCATCATAAAATAATTCACA+TGG + Chr4:67260544-67260563 MsG0480022037.01.T01:intron 20.0%
!! TCATTGGAAATAATTTATAG+TGG + Chr4:67261832-67261851 MsG0480022037.01.T01:intron 20.0%
!! TTAATCTATGAATAAGTCAA+AGG - Chr4:67260771-67260790 None:intergenic 20.0%
!! TTAGAAAATAATCCAGAAAA+TGG + Chr4:67260330-67260349 MsG0480022037.01.T01:CDS 20.0%
!! TTCTTATATAAACACATTTC+AGG + Chr4:67260587-67260606 MsG0480022037.01.T01:intron 20.0%
!! TTGAAACTAATGTAAATTTC+TGG + Chr4:67260843-67260862 MsG0480022037.01.T01:intron 20.0%
!! TTTATCTTGTGAATAAAAGT+TGG + Chr4:67259879-67259898 MsG0480022037.01.T01:intron 20.0%
!!! AATCTTCATCAAAGATTTTA+AGG + Chr4:67258785-67258804 MsG0480022037.01.T01:five_prime_UTR 20.0%
!!! ATTATTGAAATTTTCAAACC+AGG + Chr4:67259947-67259966 MsG0480022037.01.T01:intron 20.0%
!!! CATATTGTTTTGACATTTAA+AGG + Chr4:67261353-67261372 MsG0480022037.01.T01:intron 20.0%
!!! GAGAATTCTTTAGATTTTTT+GGG + Chr4:67258922-67258941 MsG0480022037.01.T01:five_prime_UTR 20.0%
!!! GTTATCTTTTTATAATTTGC+AGG + Chr4:67260865-67260884 MsG0480022037.01.T01:intron 20.0%
!!! TAACTTCTTTCTATATTTTC+AGG + Chr4:67260184-67260203 MsG0480022037.01.T01:intron 20.0%
!!! TCTGAAAAGTATTAAATCAA+TGG - Chr4:67262233-67262252 None:intergenic 20.0%
!!! TGAGAATTCTTTAGATTTTT+TGG + Chr4:67258921-67258940 MsG0480022037.01.T01:five_prime_UTR 20.0%
!!! TTATTGAAATTTTCAAACCA+GGG + Chr4:67259948-67259967 MsG0480022037.01.T01:intron 20.0%
!!! TTTACATTAGTTTCAAATTC+TGG - Chr4:67260839-67260858 None:intergenic 20.0%
!!! TTTGTTTGTTTTGTTTTGTT+AGG + Chr4:67258715-67258734 MsG0480022037.01.T01:five_prime_UTR 20.0%
! AAAATGCAAAACTCTTAACA+TGG - Chr4:67259051-67259070 None:intergenic 25.0%
! AAAGGAAAAAAGATTACCTT+CGG - Chr4:67260070-67260089 None:intergenic 25.0%
! AACATTGAAGAACAAATTCA+AGG - Chr4:67261329-67261348 None:intergenic 25.0%
! AAGGCATGTAACATAATATA+TGG - Chr4:67261393-67261412 None:intergenic 25.0%
! AAGTATTTAACAGATGATGT+GGG + Chr4:67261875-67261894 MsG0480022037.01.T01:intron 25.0%
! AATGCCATATGCTATATTTA+AGG - Chr4:67262477-67262496 None:intergenic 25.0%
! ACAAAAAGGGTAAACAAAAA+GGG + Chr4:67262761-67262780 MsG0480022037.01.T01:three_prime_UTR 25.0%
! ACAACTTATAAACACGTTAT+CGG - Chr4:67259086-67259105 None:intergenic 25.0%
! AGTAGAATGTGATAGTAATT+AGG - Chr4:67260100-67260119 None:intergenic 25.0%
! ATATGTTTGCATGTATGTAT+TGG + Chr4:67259149-67259168 MsG0480022037.01.T01:intron 25.0%
! ATCTTTGATGAAGATTTCAA+AGG - Chr4:67258781-67258800 None:intergenic 25.0%
! CAATGTATATGTAAGAATGA+TGG + Chr4:67259201-67259220 MsG0480022037.01.T01:intron 25.0%
! CAGACAAAAAAGTAATTCAA+TGG + Chr4:67260415-67260434 MsG0480022037.01.T01:CDS 25.0%
! GTATTGGAATACAATAATGA+GGG + Chr4:67261119-67261138 MsG0480022037.01.T01:intron 25.0%
! TAAAATTAGTGTGTGTGATA+TGG - Chr4:67259529-67259548 None:intergenic 25.0%
! TAAATGGAAACCTTATAGAA+GGG + Chr4:67259240-67259259 MsG0480022037.01.T01:intron 25.0%
! TACAAAGACCTTAAATCTAA+AGG - Chr4:67259604-67259623 None:intergenic 25.0%
! TAGCTTTCTTTGTTCATATA+TGG + Chr4:67262196-67262215 MsG0480022037.01.T01:intron 25.0%
! TAGTAATTAGGAGTTATGAA+AGG - Chr4:67260088-67260107 None:intergenic 25.0%
! TATATTCAGATAATGTGATC+AGG + Chr4:67262361-67262380 MsG0480022037.01.T01:three_prime_UTR 25.0%
! TATATTGTGCCAAATATCTT+TGG + Chr4:67259318-67259337 MsG0480022037.01.T01:intron 25.0%
! TCTTTGATGAAGATTTCAAA+GGG - Chr4:67258780-67258799 None:intergenic 25.0%
! TGAAACAATAACAAAACATG+AGG - Chr4:67261066-67261085 None:intergenic 25.0%
! TGTAAAACACAACAATCTTA+AGG - Chr4:67260128-67260147 None:intergenic 25.0%
! TGTATTGGAATACAATAATG+AGG + Chr4:67261118-67261137 MsG0480022037.01.T01:intron 25.0%
! TTAAAGTCAATACGTCATTA+TGG + Chr4:67261972-67261991 MsG0480022037.01.T01:CDS 25.0%
! TTAAATGGAAACCTTATAGA+AGG + Chr4:67259239-67259258 MsG0480022037.01.T01:intron 25.0%
! TTCCTCATAAAATTTGGATT+GGG + Chr4:67262569-67262588 MsG0480022037.01.T01:three_prime_UTR 25.0%
! TTGAGATTCCTTTAGATTTA+AGG + Chr4:67259593-67259612 MsG0480022037.01.T01:intron 25.0%
! TTGCATAAATTAGAAACAGT+TGG + Chr4:67261767-67261786 MsG0480022037.01.T01:intron 25.0%
! TTTGCTACAGAATACAAAAA+AGG - Chr4:67261412-67261431 None:intergenic 25.0%
!! ACTAGAAAATTCTTCAAGTT+GGG - Chr4:67261099-67261118 None:intergenic 25.0%
!! ATATGCTATATTTAAGGCTA+CGG - Chr4:67262471-67262490 None:intergenic 25.0%
!! CACTATAATAGGTATACTTT+TGG + Chr4:67260489-67260508 MsG0480022037.01.T01:intron 25.0%
!! TATGAACTGTCTTTTAATGT+TGG + Chr4:67261471-67261490 MsG0480022037.01.T01:intron 25.0%
!! TATTAGTATGGTCTTAATCA+TGG + Chr4:67261006-67261025 MsG0480022037.01.T01:intron 25.0%
!! TTATTTTCTAACAGAACCAA+TGG - Chr4:67260321-67260340 None:intergenic 25.0%
!! TTTTACAAAGTATGAACAGA+TGG - Chr4:67262730-67262749 None:intergenic 25.0%
!!! AACAAAGTTGAACTTTTTTG+TGG - Chr4:67262155-67262174 None:intergenic 25.0%
!!! TGAAGAATTTTCTAGTGTAT+TGG + Chr4:67261103-67261122 MsG0480022037.01.T01:intron 25.0%
!!! TTATTGTGATTTTTAAAGCG+AGG + Chr4:67261196-67261215 MsG0480022037.01.T01:intron 25.0%
!!! TTCTAATAATGGATTCTTGT+AGG - Chr4:67259415-67259434 None:intergenic 25.0%
ACCTTCTTTGCTGAATTATT+AGG - Chr4:67260393-67260412 None:intergenic 30.0%
AGAGACTCAACTAAACAATT+TGG + Chr4:67261252-67261271 MsG0480022037.01.T01:CDS 30.0%
AGCAACAAGGAAAATAGATA+TGG - Chr4:67262057-67262076 None:intergenic 30.0%
AGTTCTATCACAAACTTGTA+TGG - Chr4:67259458-67259477 None:intergenic 30.0%
AGTTCTCAATGCACTATAAT+AGG + Chr4:67260478-67260497 MsG0480022037.01.T01:intron 30.0%
AGTTTGGTTGATCATTTCAA+AGG + Chr4:67258822-67258841 MsG0480022037.01.T01:five_prime_UTR 30.0%
ATAAAAAACCAGTGTCCTAT+CGG - Chr4:67260630-67260649 None:intergenic 30.0%
ATATTGTTTACCCCAAACAA+AGG - Chr4:67262544-67262563 None:intergenic 30.0%
ATCAATTAGAGGAGAAGTTT+GGG + Chr4:67259980-67259999 MsG0480022037.01.T01:CDS 30.0%
CACTAGAAAATTCTTCAAGT+TGG - Chr4:67261100-67261119 None:intergenic 30.0%
CAGATATTGAATGACACAAA+TGG + Chr4:67262249-67262268 MsG0480022037.01.T01:intron 30.0%
CCAAAACTTCATCAACATAT+AGG + Chr4:67261298-67261317 MsG0480022037.01.T01:CDS 30.0%
CCTTCTTTGCTGAATTATTA+GGG - Chr4:67260392-67260411 None:intergenic 30.0%
GACAAAAAGGGTAAACAAAA+AGG + Chr4:67262760-67262779 MsG0480022037.01.T01:three_prime_UTR 30.0%
GATAACGTGTTTATAAGTTG+TGG + Chr4:67259085-67259104 MsG0480022037.01.T01:intron 30.0%
GCAACAAGGAAAATAGATAT+GGG - Chr4:67262056-67262075 None:intergenic 30.0%
GCATGTAACATAATATATGG+AGG - Chr4:67261390-67261409 None:intergenic 30.0%
GTAAAACACTAAGTGAAAGA+AGG + Chr4:67259680-67259699 MsG0480022037.01.T01:CDS 30.0%
GTTCCTCATAAAATTTGGAT+TGG + Chr4:67262568-67262587 MsG0480022037.01.T01:three_prime_UTR 30.0%
GTTTGGTTGATCATTTCAAA+GGG + Chr4:67258823-67258842 MsG0480022037.01.T01:five_prime_UTR 30.0%
TATTGTTTACCCCAAACAAA+GGG - Chr4:67262543-67262562 None:intergenic 30.0%
TCATACATCCAAAACATGTT+GGG - Chr4:67261915-67261934 None:intergenic 30.0%
TGATCAAATGTGAAACTCAA+TGG - Chr4:67259376-67259395 None:intergenic 30.0%
TGCCATGGCATAATAAAAAT+TGG - Chr4:67261706-67261725 None:intergenic 30.0%
TTCATACATCCAAAACATGT+TGG - Chr4:67261916-67261935 None:intergenic 30.0%
TTGATCCTAAATCTAGACTT+GGG - Chr4:67259014-67259033 None:intergenic 30.0%
TTGGAGTTCCTCATAAAATT+TGG + Chr4:67262563-67262582 MsG0480022037.01.T01:three_prime_UTR 30.0%
TTTGGTTGATCATTTCAAAG+GGG + Chr4:67258824-67258843 MsG0480022037.01.T01:five_prime_UTR 30.0%
! AACCCAATCCAAATTTTATG+AGG - Chr4:67262574-67262593 None:intergenic 30.0%
! AATATGATCCCAACATGTTT+TGG + Chr4:67261904-67261923 MsG0480022037.01.T01:CDS 30.0%
! ATAGATAATGATGTTGGCTA+TGG + Chr4:67260704-67260723 MsG0480022037.01.T01:CDS 30.0%
! GAAGTATTTAACAGATGATG+TGG + Chr4:67261874-67261893 MsG0480022037.01.T01:intron 30.0%
! GTAGCCTTAAATATAGCATA+TGG + Chr4:67262470-67262489 MsG0480022037.01.T01:three_prime_UTR 30.0%
! GTATATCAAGTTTTCCTCAT+TGG + Chr4:67261816-67261835 MsG0480022037.01.T01:intron 30.0%
! GTCCAATTTTTATTATGCCA+TGG + Chr4:67261701-67261720 MsG0480022037.01.T01:intron 30.0%
! GTTCATATATGGATTGACTT+TGG + Chr4:67262207-67262226 MsG0480022037.01.T01:intron 30.0%
! TTGTTTGGGGTAAACAATAT+TGG + Chr4:67262544-67262563 MsG0480022037.01.T01:three_prime_UTR 30.0%
!! AATGGTTCTAATCATGATGA+TGG + Chr4:67259268-67259287 MsG0480022037.01.T01:intron 30.0%
!! ATATTCTTGCTGTTTATGCT+AGG + Chr4:67260681-67260700 MsG0480022037.01.T01:CDS 30.0%
!! CCTATATGTTGATGAAGTTT+TGG - Chr4:67261301-67261320 None:intergenic 30.0%
!!! TCTTTAGATTTTTTGGGATG+TGG + Chr4:67258928-67258947 MsG0480022037.01.T01:exon 30.0%
AAAATAGATATGGGAAGAGG+AGG - Chr4:67262047-67262066 None:intergenic 35.0%
AAACACTAAGTGAAAGAAGG+TGG + Chr4:67259683-67259702 MsG0480022037.01.T01:CDS 35.0%
AAATCTAGACTTGGGAACAT+CGG - Chr4:67259006-67259025 None:intergenic 35.0%
AAGGTACAATGAATCACAGA+AGG - Chr4:67261573-67261592 None:intergenic 35.0%
ACGTGTTTATAAGTTGTGGA+CGG + Chr4:67259089-67259108 MsG0480022037.01.T01:intron 35.0%
AGAACCAATGGATCTTGAAT+CGG - Chr4:67260309-67260328 None:intergenic 35.0%
AGGAAAATAGATATGGGAAG+AGG - Chr4:67262050-67262069 None:intergenic 35.0%
ATGTTCCCAAGTCTAGATTT+AGG + Chr4:67259006-67259025 MsG0480022037.01.T01:CDS 35.0%
CAAACTTCTCCTCTAATTGA+TGG - Chr4:67259981-67260000 None:intergenic 35.0%
CAACATCAATTTCCTTGACA+CGG - Chr4:67262796-67262815 None:intergenic 35.0%
CATCAATTAGAGGAGAAGTT+TGG + Chr4:67259979-67259998 MsG0480022037.01.T01:CDS 35.0%
CCCTAATAATTCAGCAAAGA+AGG + Chr4:67260389-67260408 MsG0480022037.01.T01:CDS 35.0%
CGTTACAAGCCAAAGATATT+TGG - Chr4:67259330-67259349 None:intergenic 35.0%
CTGTGATTCATTGTACCTTT+GGG + Chr4:67261574-67261593 MsG0480022037.01.T01:CDS 35.0%
CTTGATCCTAAATCTAGACT+TGG - Chr4:67259015-67259034 None:intergenic 35.0%
GAAGTTTGGGAATTTCTACT+CGG + Chr4:67259993-67260012 MsG0480022037.01.T01:CDS 35.0%
GAGAGAGAGAATATGAGAAA+TGG + Chr4:67262002-67262021 MsG0480022037.01.T01:CDS 35.0%
GAGGAAAACTTGATATACGA+AGG - Chr4:67261814-67261833 None:intergenic 35.0%
GAGGAAATTGAAATCATTGC+AGG + Chr4:67262437-67262456 MsG0480022037.01.T01:three_prime_UTR 35.0%
GCTAGGATAGATAATGATGT+TGG + Chr4:67260698-67260717 MsG0480022037.01.T01:CDS 35.0%
GTAACACATCTCTTGATCAA+CGG - Chr4:67262507-67262526 None:intergenic 35.0%
GTTTCATAGAAAGAATCAGC+AGG - Chr4:67258969-67258988 None:intergenic 35.0%
TCATCGAGCAGTATTATCAT+AGG - Chr4:67260910-67260929 None:intergenic 35.0%
TCTGTGATTCATTGTACCTT+TGG + Chr4:67261573-67261592 MsG0480022037.01.T01:CDS 35.0%
TGAAATGATCAACCAAACTC+AGG - Chr4:67258821-67258840 None:intergenic 35.0%
TTTGCTGAATTATTAGGGCT+TGG - Chr4:67260387-67260406 None:intergenic 35.0%
! CAAGTCTAGATTTAGGATCA+AGG + Chr4:67259013-67259032 MsG0480022037.01.T01:CDS 35.0%
! GGAATTTTTCTTCCTGAGTT+TGG + Chr4:67258806-67258825 MsG0480022037.01.T01:five_prime_UTR 35.0%
! GGGTTTTACAGAATTCAGAA+AGG + Chr4:67262589-67262608 MsG0480022037.01.T01:three_prime_UTR 35.0%
! GTATTATCATAGGAGAGCAT+AGG - Chr4:67260900-67260919 None:intergenic 35.0%
! TATTTAAGGCTACGGTTTCT+TGG - Chr4:67262463-67262482 None:intergenic 35.0%
!! TGTTATCGATTCATTAGACG+AGG + Chr4:67262418-67262437 MsG0480022037.01.T01:three_prime_UTR 35.0%
!!! ACTAGTTTTTGTTGTTCTGC+AGG + Chr4:67259654-67259673 MsG0480022037.01.T01:intron 35.0%
AAACCTTGACGACATCATCT+AGG - Chr4:67262127-67262146 None:intergenic 40.0%
AATCTACCACTTCCTACAAG+AGG - Chr4:67260252-67260271 None:intergenic 40.0%
AGAATCTGAAGAAACTGCTG+AGG + Chr4:67261935-67261954 MsG0480022037.01.T01:CDS 40.0%
AGATGCACCAATAACAGTGT+GGG + Chr4:67261226-67261245 MsG0480022037.01.T01:CDS 40.0%
AGATGCCAAAAAAGCCTGTA+TGG + Chr4:67262278-67262297 MsG0480022037.01.T01:CDS 40.0%
ATCAATTTCCTTGACACGGA+TGG - Chr4:67262792-67262811 None:intergenic 40.0%
ATGATGAAGCTGATGCTTTC+TGG + Chr4:67260926-67260945 MsG0480022037.01.T01:CDS 40.0%
ATGCATACGATTGCTGCATT+AGG - Chr4:67259560-67259579 None:intergenic 40.0%
ATTGTACCTCCTCAAGAAGT+AGG + Chr4:67260357-67260376 MsG0480022037.01.T01:CDS 40.0%
CCATTGTTCACCCTTCTATA+AGG - Chr4:67259253-67259272 None:intergenic 40.0%
CCTATATCCAAATACCCTTC+CGG - Chr4:67259724-67259743 None:intergenic 40.0%
CCTTATAGAAGGGTGAACAA+TGG + Chr4:67259250-67259269 MsG0480022037.01.T01:intron 40.0%
CTTCTCCTCTAATTGATGGA+TGG - Chr4:67259977-67259996 None:intergenic 40.0%
CTTTCAACACACTAGCAACA+AGG - Chr4:67262070-67262089 None:intergenic 40.0%
GACTCAATGTTCATCTGCAT+GGG - Chr4:67261645-67261664 None:intergenic 40.0%
GATTCTTGTAGGCACAAATG+GGG - Chr4:67259404-67259423 None:intergenic 40.0%
GCAATGAAGAAAATGTGCCA+TGG - Chr4:67261721-67261740 None:intergenic 40.0%
GGAATCCATCCATCAATTAG+AGG + Chr4:67259969-67259988 MsG0480022037.01.T01:CDS 40.0%
GGACAATGTATGCATACTGA+GGG - Chr4:67261685-67261704 None:intergenic 40.0%
GGATTCTTGTAGGCACAAAT+GGG - Chr4:67259405-67259424 None:intergenic 40.0%
GTATCCAGACAAGGTCAATA+GGG - Chr4:67258758-67258777 None:intergenic 40.0%
TCGAGGAAAGAGAAGAGATA+AGG + Chr4:67260039-67260058 MsG0480022037.01.T01:CDS 40.0%
TGACTCAATGTTCATCTGCA+TGG - Chr4:67261646-67261665 None:intergenic 40.0%
TGATTCATTGTACCTTTGGG+AGG + Chr4:67261577-67261596 MsG0480022037.01.T01:CDS 40.0%
TGCATACGATTGCTGCATTA+GGG - Chr4:67259559-67259578 None:intergenic 40.0%
TGGACAATGTATGCATACTG+AGG - Chr4:67261686-67261705 None:intergenic 40.0%
TGGATTCTTGTAGGCACAAA+TGG - Chr4:67259406-67259425 None:intergenic 40.0%
TTCCTACAAGAGGAAACAGT+TGG - Chr4:67260242-67260261 None:intergenic 40.0%
TTGAAAATGCAGTTACCCCA+CGG - Chr4:67259768-67259787 None:intergenic 40.0%
! AATGATGTTGGCTATGGTCA+AGG + Chr4:67260710-67260729 MsG0480022037.01.T01:CDS 40.0%
! GGTACAATCACTCCATTTTC+TGG - Chr4:67260345-67260364 None:intergenic 40.0%
! TAATTGATGGATGGATTCCC+TGG - Chr4:67259968-67259987 None:intergenic 40.0%
!! AAGGGTATTTGGATATAGGC+AGG + Chr4:67259725-67259744 MsG0480022037.01.T01:CDS 40.0%
!! GTGACTATCTGTTCGCTTTT+CGG + Chr4:67261516-67261535 MsG0480022037.01.T01:CDS 40.0%
!! GTTCGCTTTTCGGATGTTAA+TGG + Chr4:67261526-67261545 MsG0480022037.01.T01:CDS 40.0%
!! TGTACCGATTCAAGATCCAT+TGG + Chr4:67260302-67260321 MsG0480022037.01.T01:CDS 40.0%
!! TTTCAAAGGGTATCCAGACA+AGG - Chr4:67258767-67258786 None:intergenic 40.0%
AAAGAATCAGCAGGAACTCC+AGG - Chr4:67258960-67258979 None:intergenic 45.0%
AAGCTAAGCTAACCTCCCAA+AGG - Chr4:67261592-67261611 None:intergenic 45.0%
AAGTTTCAACGCTGCCATAC+AGG - Chr4:67262295-67262314 None:intergenic 45.0%
ATGCACCAATAACAGTGTGG+GGG + Chr4:67261228-67261247 MsG0480022037.01.T01:CDS 45.0%
CAGATGCACCAATAACAGTG+TGG + Chr4:67261225-67261244 MsG0480022037.01.T01:CDS 45.0%
CTGTTTCCTCTTGTAGGAAG+TGG + Chr4:67260243-67260262 MsG0480022037.01.T01:CDS 45.0%
CTTTCCTCGAATGTACTCGT+GGG - Chr4:67260029-67260048 None:intergenic 45.0%
GACGCAATATGCTGAATGGA+AGG + Chr4:67260206-67260225 MsG0480022037.01.T01:CDS 45.0%
GATGCACCAATAACAGTGTG+GGG + Chr4:67261227-67261246 MsG0480022037.01.T01:CDS 45.0%
GGTATCCAGACAAGGTCAAT+AGG - Chr4:67258759-67258778 None:intergenic 45.0%
TCAGGACGCAATATGCTGAA+TGG + Chr4:67260202-67260221 MsG0480022037.01.T01:intron 45.0%
TCTTTCCTCGAATGTACTCG+TGG - Chr4:67260030-67260049 None:intergenic 45.0%
TGTTGGTGCACAGAGCATAT+TGG + Chr4:67261488-67261507 MsG0480022037.01.T01:intron 45.0%
TTCTTTCTATGAAACCCGCC+CGG + Chr4:67258974-67258993 MsG0480022037.01.T01:CDS 45.0%
TTGAATCGGTACACCATCGT+CGG - Chr4:67260295-67260314 None:intergenic 45.0%
! GCTGCTCATCTAAGACTTGA+TGG - Chr4:67262622-67262641 None:intergenic 45.0%
! TTGACGTGATTCGTACCGAT+AGG + Chr4:67260612-67260631 MsG0480022037.01.T01:CDS 45.0%
!! ATTCTCTCCGGAAGGGTATT+TGG + Chr4:67259714-67259733 MsG0480022037.01.T01:CDS 45.0%
!! CCGGAAGGGTATTTGGATAT+AGG + Chr4:67259721-67259740 MsG0480022037.01.T01:CDS 45.0%
!! GAGATGTGTTACTTCCTGCA+TGG + Chr4:67262515-67262534 MsG0480022037.01.T01:three_prime_UTR 45.0%
!!! GTTTTTGTTGTTCTGCAGGC+TGG + Chr4:67259658-67259677 MsG0480022037.01.T01:intron 45.0%
AAAATGCAGTTACCCCACGG+TGG - Chr4:67259765-67259784 None:intergenic 50.0%
ACACCATCGTCGGTAACTAC+AGG - Chr4:67260285-67260304 None:intergenic 50.0%
AGGCCTAGATGATGTCGTCA+AGG + Chr4:67262121-67262140 MsG0480022037.01.T01:CDS 50.0%
CCAGACAAGGTCAATAGGGT+AGG - Chr4:67258754-67258773 None:intergenic 50.0%
CCTACCCTATTGACCTTGTC+TGG + Chr4:67258751-67258770 MsG0480022037.01.T01:five_prime_UTR 50.0%
CGCCAACTGTTTCCTCTTGT+AGG + Chr4:67260237-67260256 MsG0480022037.01.T01:CDS 50.0%
CTCTACCCCCACACTGTTAT+TGG - Chr4:67261236-67261255 None:intergenic 50.0%
GGGAATAACCATCCGTGTCA+AGG + Chr4:67262781-67262800 MsG0480022037.01.T01:three_prime_UTR 50.0%
TGAACCCACGAGTACATTCG+AGG + Chr4:67260022-67260041 MsG0480022037.01.T01:CDS 50.0%
TGCACAGAGCATATTGGTGG+AGG + Chr4:67261494-67261513 MsG0480022037.01.T01:intron 50.0%
TGGTGCACAGAGCATATTGG+TGG + Chr4:67261491-67261510 MsG0480022037.01.T01:intron 50.0%
TTCAAAGGGGTCCAGCTTCT+AGG + Chr4:67258837-67258856 MsG0480022037.01.T01:five_prime_UTR 50.0%
TTGGGAACATCGGTGCATTC+CGG - Chr4:67258996-67259015 None:intergenic 50.0%
! CTGCATGGTGCCCTTTGTTT+GGG + Chr4:67262530-67262549 MsG0480022037.01.T01:three_prime_UTR 50.0%
! CTTGGAGCACCTACTTCTTG+AGG - Chr4:67260369-67260388 None:intergenic 50.0%
! GATTCGTACCGATAGGACAC+TGG + Chr4:67260619-67260638 MsG0480022037.01.T01:CDS 50.0%
! TGCATGGTGCCCTTTGTTTG+GGG + Chr4:67262531-67262550 MsG0480022037.01.T01:three_prime_UTR 50.0%
! TTTGGGATGTGGAGAGATCC+TGG + Chr4:67258939-67258958 MsG0480022037.01.T01:exon 50.0%
!!! CGCTGCCATACAGGCTTTTT+TGG - Chr4:67262286-67262305 None:intergenic 50.0%
AACAGCCAGCACCTAGAAGC+TGG - Chr4:67258851-67258870 None:intergenic 55.0%
ACACTACTCCAGCAAGCACG+AGG + Chr4:67262101-67262120 MsG0480022037.01.T01:CDS 55.0%
ACTCTAAGCCGAATCCACCG+TGG + Chr4:67259748-67259767 MsG0480022037.01.T01:CDS 55.0%
CCTGCATGGTGCCCTTTGTT+TGG + Chr4:67262529-67262548 MsG0480022037.01.T01:three_prime_UTR 55.0%
CTCTAAGCCGAATCCACCGT+GGG + Chr4:67259749-67259768 MsG0480022037.01.T01:CDS 55.0%
GCACCTGTAGTTACCGACGA+TGG + Chr4:67260279-67260298 MsG0480022037.01.T01:CDS 55.0%
GTGCTGCATTCTCTCCGGAA+GGG + Chr4:67259707-67259726 MsG0480022037.01.T01:CDS 55.0%
TCTAAGCCGAATCCACCGTG+GGG + Chr4:67259750-67259769 MsG0480022037.01.T01:CDS 55.0%
TGGGAACATCGGTGCATTCC+GGG - Chr4:67258995-67259014 None:intergenic 55.0%
! AAGAGATAAGGCAGCGCCGA+AGG + Chr4:67260051-67260070 MsG0480022037.01.T01:CDS 55.0%
! CAGTTACCCCACGGTGGATT+CGG - Chr4:67259759-67259778 None:intergenic 55.0%
! GGAGCACCTACTTCTTGAGG+AGG - Chr4:67260366-67260385 None:intergenic 55.0%
!! CCAAACAAAGGGCACCATGC+AGG - Chr4:67262532-67262551 None:intergenic 55.0%
AACATCGGTGCATTCCGGGC+GGG - Chr4:67258991-67259010 None:intergenic 60.0%
CATCTAGGCCTCGTGCTTGC+TGG - Chr4:67262112-67262131 None:intergenic 60.0%
CGTGCTGCATTCTCTCCGGA+AGG + Chr4:67259706-67259725 MsG0480022037.01.T01:CDS 60.0%
GAACATCGGTGCATTCCGGG+CGG - Chr4:67258992-67259011 None:intergenic 60.0%
GTGGCGTGCTGCATTCTCTC+CGG + Chr4:67259702-67259721 MsG0480022037.01.T01:CDS 60.0%
GGGGTCCAGCTTCTAGGTGC+TGG + Chr4:67258843-67258862 MsG0480022037.01.T01:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 67258692 67262815 67258692 ID=MsG0480022037.01;Name=MsG0480022037.01
Chr4 mRNA 67258692 67262815 67258692 ID=MsG0480022037.01.T01;Parent=MsG0480022037.01;Name=MsG0480022037.01.T01;_AED=0.47;_eAED=0.47;_QI=253|1|1|1|0.66|0.8|10|462|438
Chr4 exon 67258692 67259034 67258692 ID=MsG0480022037.01.T01:exon:8197;Parent=MsG0480022037.01.T01
Chr4 exon 67259676 67259771 67259676 ID=MsG0480022037.01.T01:exon:8198;Parent=MsG0480022037.01.T01
Chr4 exon 67259969 67260072 67259969 ID=MsG0480022037.01.T01:exon:8199;Parent=MsG0480022037.01.T01
Chr4 exon 67260206 67260459 67260206 ID=MsG0480022037.01.T01:exon:8200;Parent=MsG0480022037.01.T01
Chr4 exon 67260609 67260731 67260609 ID=MsG0480022037.01.T01:exon:8201;Parent=MsG0480022037.01.T01
Chr4 exon 67260887 67260975 67260887 ID=MsG0480022037.01.T01:exon:8202;Parent=MsG0480022037.01.T01
Chr4 exon 67261214 67261319 67261214 ID=MsG0480022037.01.T01:exon:8203;Parent=MsG0480022037.01.T01
Chr4 exon 67261501 67261598 67261501 ID=MsG0480022037.01.T01:exon:8204;Parent=MsG0480022037.01.T01
Chr4 exon 67261888 67262142 67261888 ID=MsG0480022037.01.T01:exon:8205;Parent=MsG0480022037.01.T01
Chr4 exon 67262252 67262815 67262252 ID=MsG0480022037.01.T01:exon:8206;Parent=MsG0480022037.01.T01
Chr4 five_prime_UTR 67258692 67258944 67258692 ID=MsG0480022037.01.T01:five_prime_utr;Parent=MsG0480022037.01.T01
Chr4 CDS 67258945 67259034 67258945 ID=MsG0480022037.01.T01:cds;Parent=MsG0480022037.01.T01
Chr4 CDS 67259676 67259771 67259676 ID=MsG0480022037.01.T01:cds;Parent=MsG0480022037.01.T01
Chr4 CDS 67259969 67260072 67259969 ID=MsG0480022037.01.T01:cds;Parent=MsG0480022037.01.T01
Chr4 CDS 67260206 67260459 67260206 ID=MsG0480022037.01.T01:cds;Parent=MsG0480022037.01.T01
Chr4 CDS 67260609 67260731 67260609 ID=MsG0480022037.01.T01:cds;Parent=MsG0480022037.01.T01
Chr4 CDS 67260887 67260975 67260887 ID=MsG0480022037.01.T01:cds;Parent=MsG0480022037.01.T01
Chr4 CDS 67261214 67261319 67261214 ID=MsG0480022037.01.T01:cds;Parent=MsG0480022037.01.T01
Chr4 CDS 67261501 67261598 67261501 ID=MsG0480022037.01.T01:cds;Parent=MsG0480022037.01.T01
Chr4 CDS 67261888 67262142 67261888 ID=MsG0480022037.01.T01:cds;Parent=MsG0480022037.01.T01
Chr4 CDS 67262252 67262353 67262252 ID=MsG0480022037.01.T01:cds;Parent=MsG0480022037.01.T01
Chr4 three_prime_UTR 67262354 67262815 67262354 ID=MsG0480022037.01.T01:three_prime_utr;Parent=MsG0480022037.01.T01
Gene Sequence

>MsG0480022037.01.T01

ATGTGGAGAGATCCTGGAGTTCCTGCTGATTCTTTCTATGAAACCCGCCCGGAATGCACCGATGTTCCCAAGTCTAGATTTAGGATCAAGGCTGGTAAAACACTAAGTGAAAGAAGGTGGCGTGCTGCATTCTCTCCGGAAGGGTATTTGGATATAGGCAGGACTCTAAGCCGAATCCACCGTGGGGGAATCCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTCGGTTGCTATGAACCCACGAGTACATTCGAGGAAAGAGAAGAGATAAGGCAGCGCCGAAGGACGCAATATGCTGAATGGAAGGAAGAATGTCGCCAACTGTTTCCTCTTGTAGGAAGTGGTAGATTTATTACAGCACCTGTAGTTACCGACGATGGTGTACCGATTCAAGATCCATTGGTTCTGTTAGAAAATAATCCAGAAAATGGAGTGATTGTACCTCCTCAAGAAGTAGGTGCTCCAAGCCCTAATAATTCAGCAAAGAAGGTGACAGACAAAAAAGTAATTCAATGGATGTTAACTTTACATCAAATAGGTCTTGACGTGATTCGTACCGATAGGACACTGGTTTTTTATGAGAAGAAAGAGAATTTGTCAAAATTATGGGATATTCTTGCTGTTTATGCTAGGATAGATAATGATGTTGGCTATGGTCAAGGAATGAGTGACCTATGCTCTCCTATGATAATACTGCTCGATGATGAAGCTGATGCTTTCTGGTGTTTCGAGCGTCTGATGCGTAGATTACGAGGAAATTTCAGATGCACCAATAACAGTGTGGGGGTAGAGACTCAACTAAACAATTTGGCTTCAATTACTCAAGTAATTGATCCAAAACTTCATCAACATATAGAGCATATTGGTGGAGGTGACTATCTGTTCGCTTTTCGGATGTTAATGGTTCTATTTCGTCGAGAATTCTCCTTCTGTGATTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCCAACATGTTTTGGATGTATGAAGAATCTGAAGAAACTGCTGAGGAATCTAAAGCAAGATTAAAGTCAATACGTCATTATGGAAAATTTGAGAGAGAGAATATGAGAAATGGAGCAAAGAATACAGAAGAACCTCCTCTTCCCATATCTATTTTCCTTGTTGCTAGTGTGTTGAAAGAAAAAAGTGCAACACTACTCCAGCAAGCACGAGGCCTAGATGATGTCGTCAAGATATTGAATGACACAAATGGAAATCTAGATGCCAAAAAAGCCTGTATGGCAGCGTTGAAACTTCACAAGAAATATATGAAAAAGATGCAACAGTCACGTTAA
Protein sequence

>MsG0480022037.01.T01

MWRDPGVPADSFYETRPECTDVPKSRFRIKAGKTLSERRWRAAFSPEGYLDIGRTLSRIHRGGIHPSIRGEVWEFLLGCYEPTSTFEEREEIRQRRRTQYAEWKEECRQLFPLVGSGRFITAPVVTDDGVPIQDPLVLLENNPENGVIVPPQEVGAPSPNNSAKKVTDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKKENLSKLWDILAVYARIDNDVGYGQGMSDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTNNSVGVETQLNNLASITQVIDPKLHQHIEHIGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPNMFWMYEESEETAEESKARLKSIRHYGKFERENMRNGAKNTEEPPLPISIFLVASVLKEKSATLLQQARGLDDVVKILNDTNGNLDAKKACMAALKLHKKYMKKMQQSR*