AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022040.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022040.01.T01 MTR_4g081170 96.354 192 1 1 1 192 1 186 9.47e-133 370
MsG0480022040.01.T01 MTR_8g027700 91.146 192 11 1 1 192 1 186 1.97e-126 353
MsG0480022040.01.T01 MTR_8g027700 89.362 141 9 1 52 192 1 135 2.42e-88 255
MsG0480022040.01.T01 MTR_4g027400 82.979 47 8 0 1 47 1 47 1.01e-21 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022040.01.T01 AT5G54750 83.854 192 25 1 1 192 1 186 8.02e-117 329
MsG0480022040.01.T01 AT5G54750 78.537 205 25 2 1 192 1 199 6.54e-113 320

Find 49 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTACTTGTAGTATTATTT+TGG 0.173251 4:+67280062 MsG0480022040.01.T01:CDS
CTTCATCCTTGTTATGTCAT+AGG 0.239962 4:+67281019 MsG0480022040.01.T01:three_prime_UTR
ACAATTGAATTGTAAATGTT+TGG 0.285390 4:-67281151 None:intergenic
TCCTTATATGGATACTCTTC+TGG 0.287013 4:-67280790 None:intergenic
TATTACTCATCATCCTTATA+TGG 0.314204 4:-67280802 None:intergenic
ATTGCCTTTGACTGCGGGTT+AGG 0.351121 4:+67280943 MsG0480022040.01.T01:three_prime_UTR
ATAGAAGCTTACCATATCTA+AGG 0.368967 4:-67280175 None:intergenic
TCCAGAAGAGTATCCATATA+AGG 0.373933 4:+67280789 MsG0480022040.01.T01:CDS
TCGTCAATTGCTTACAGATC+TGG 0.380410 4:+67278128 MsG0480022040.01.T01:CDS
GCTCCGGTTGCTCCTCGAAC+TGG 0.390423 4:+67278036 MsG0480022040.01.T01:CDS
TTACCGCATCCGTGACCAAT+TGG 0.424789 4:+67280028 MsG0480022040.01.T01:CDS
ATGATATTGCCTTTGACTGC+GGG 0.447713 4:+67280938 MsG0480022040.01.T01:three_prime_UTR
ATTTCAATTGTGAAAAGTGT+TGG 0.448007 4:-67281074 None:intergenic
GTGTTGGCTCATCATACAAT+AGG 0.456697 4:-67281058 None:intergenic
TCGCCAGTTCGAGGAGCAAC+CGG 0.457842 4:-67278039 None:intergenic
AAGATGATAATCTAATACTT+AGG 0.460702 4:-67280853 None:intergenic
TTGTAAAGTTTAGAGCCCTT+TGG 0.478773 4:+67281101 MsG0480022040.01.T01:three_prime_UTR
TATAGACCTTGATAGTTGTC+AGG 0.479131 4:-67280117 None:intergenic
CAATGAAGGCTGAGGTCACT+TGG 0.479280 4:+67280704 MsG0480022040.01.T01:CDS
ATATTAAGCGGAGTCATTAG+AGG 0.486373 4:+67280150 MsG0480022040.01.T01:CDS
CATTAGAGGAGCCTTAGATA+TGG 0.489659 4:+67280164 MsG0480022040.01.T01:CDS
ATCCCAATTGGTCACGGATG+CGG 0.496672 4:-67280031 None:intergenic
TACCGCATCCGTGACCAATT+GGG 0.499246 4:+67280029 MsG0480022040.01.T01:CDS
GAGCTCTTCACTCTCACATA+TGG 0.505504 4:+67278096 MsG0480022040.01.T01:CDS
ATCTGAGTTCTCTCTAACGA+TGG 0.508537 4:+67278014 MsG0480022040.01.T01:exon
TGGCTAAATCTAATGTCTCA+AGG 0.508999 4:+67278311 MsG0480022040.01.T01:CDS
TATGATATTGCCTTTGACTG+CGG 0.525888 4:+67280937 MsG0480022040.01.T01:three_prime_UTR
AGTCCCTTCAGCATCCCAAT+TGG 0.532365 4:-67280043 None:intergenic
TGGCTACGAGATGCGCTTCG+AGG 0.535332 4:+67280724 MsG0480022040.01.T01:CDS
GACTGCTGATGTCATTGCTA+AGG 0.540916 4:+67278351 MsG0480022040.01.T01:CDS
GAGCTTCCTGACAACTATCA+AGG 0.547242 4:+67280111 MsG0480022040.01.T01:CDS
GGTTGGTTTAAAATGTTCCT+CGG 0.552620 4:+67280003 MsG0480022040.01.T01:intron
CTCAAGCCTATGACATAACA+AGG 0.560349 4:-67281025 None:intergenic
TCATACTCAGGTATCAATGA+AGG 0.563147 4:+67280690 MsG0480022040.01.T01:intron
TACTACTGCAACATATTAAG+CGG 0.569518 4:+67280138 MsG0480022040.01.T01:CDS
GTTCTCTCTAACGATGGCTC+CGG 0.575787 4:+67278020 MsG0480022040.01.T01:exon
AGATCCTAACCCGCAGTCAA+AGG 0.580961 4:-67280947 None:intergenic
ATTGCTTACAGATCTGGAAG+AGG 0.584590 4:+67278134 MsG0480022040.01.T01:CDS
TCGCGCAAAGCAGAAGCAGA+AGG 0.588236 4:+67277967 MsG0480022040.01.T01:five_prime_UTR
TAACATTGAACGCGTTAATG+CGG 0.588850 4:+67278074 MsG0480022040.01.T01:CDS
GTGACCAATTGGGATGCTGA+AGG 0.590525 4:+67280039 MsG0480022040.01.T01:CDS
TTCAGCATCCCAATTGGTCA+CGG 0.591444 4:-67280037 None:intergenic
TGACCAATTGGGATGCTGAA+GGG 0.593955 4:+67280040 MsG0480022040.01.T01:CDS
AGCTCAACAAAGTCTACCAA+AGG 0.594508 4:-67280093 None:intergenic
AATATCGCATCGCCAGTTCG+AGG 0.598216 4:-67278048 None:intergenic
TCAGGTATCAATGAAGGCTG+AGG 0.608851 4:+67280696 MsG0480022040.01.T01:intron
CTTGTTATGTCATAGGCTTG+AGG 0.643342 4:+67281026 MsG0480022040.01.T01:three_prime_UTR
GTTTCATCAAAATGCACACA+AGG 0.650463 4:-67280880 None:intergenic
TCACGGATGCGGTAACACCG+AGG 0.770702 4:-67280020 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTCAGTATCTAATAAT+TGG + Chr4:67279804-67279823 MsG0480022040.01.T01:intron 15.0%
!! TTTATAATATTATATCGTCT+TGG + Chr4:67279688-67279707 MsG0480022040.01.T01:intron 15.0%
!!! ATTAAGAGTATAAAAATAAG+TGG - Chr4:67281215-67281234 None:intergenic 15.0%
!!! CTATTTATTTTATTTTGAGA+TGG - Chr4:67281179-67281198 None:intergenic 15.0%
!! AACATAAAAAGCTATCATTA+TGG + Chr4:67279485-67279504 MsG0480022040.01.T01:intron 20.0%
!! AAGATGATAATCTAATACTT+AGG - Chr4:67280856-67280875 None:intergenic 20.0%
!! AATTAACACATACGAATTTA+GGG - Chr4:67279732-67279751 None:intergenic 20.0%
!! ACAATTGAATTGTAAATGTT+TGG - Chr4:67281154-67281173 None:intergenic 20.0%
!! TAATTAACACATACGAATTT+AGG - Chr4:67279733-67279752 None:intergenic 20.0%
!! TGAAAATCCATAATGTAATT+GGG + Chr4:67280513-67280532 MsG0480022040.01.T01:intron 20.0%
!! TGCAATCTATTTAGTAATAT+GGG + Chr4:67278730-67278749 MsG0480022040.01.T01:intron 20.0%
!! TTGAAAATCCATAATGTAAT+TGG + Chr4:67280512-67280531 MsG0480022040.01.T01:intron 20.0%
!!! AAACCAGAATAATTTAGTTT+CGG - Chr4:67279443-67279462 None:intergenic 20.0%
!!! AACAGTTTTAAGCATTTAAA+GGG - Chr4:67280991-67281010 None:intergenic 20.0%
!!! AATTTTCTTAATGAAAGGAT+AGG - Chr4:67278559-67278578 None:intergenic 20.0%
!!! GAAAGAATTTTCTTAATGAA+AGG - Chr4:67278564-67278583 None:intergenic 20.0%
! AAATCTTTATTAGAAGACTC+TGG - Chr4:67278586-67278605 None:intergenic 25.0%
! AATGAAAATGCCAATATATG+TGG - Chr4:67279264-67279283 None:intergenic 25.0%
! CGTAAAAAAACAAAAAATGC+TGG - Chr4:67279902-67279921 None:intergenic 25.0%
! CTGCAATCTATTTAGTAATA+TGG + Chr4:67278729-67278748 MsG0480022040.01.T01:intron 25.0%
! GTGTATATGAATAAGAGATA+GGG + Chr4:67278665-67278684 MsG0480022040.01.T01:intron 25.0%
! TATTACTCATCATCCTTATA+TGG - Chr4:67280805-67280824 None:intergenic 25.0%
! TCAAACATATATAAAGCAGA+AGG + Chr4:67279941-67279960 MsG0480022040.01.T01:intron 25.0%
! TGATTAAAAAACTGGTGAAT+GGG - Chr4:67280237-67280256 None:intergenic 25.0%
! TGCTTTCAGAAAATAAAGAA+CGG - Chr4:67280443-67280462 None:intergenic 25.0%
! TGTGTATATGAATAAGAGAT+AGG + Chr4:67278664-67278683 MsG0480022040.01.T01:intron 25.0%
! TTCTCATCAAAATGATTGAT+AGG + Chr4:67278609-67278628 MsG0480022040.01.T01:intron 25.0%
! TTGGTATGATATTTACAAGA+CGG + Chr4:67279848-67279867 MsG0480022040.01.T01:intron 25.0%
! TTTGTATGGTTTATCTTGTT+TGG + Chr4:67280358-67280377 MsG0480022040.01.T01:intron 25.0%
!! AACCAGAATAATTTAGTTTC+GGG - Chr4:67279442-67279461 None:intergenic 25.0%
!! AGATTACTCATGATTTTGTA+TGG + Chr4:67280344-67280363 MsG0480022040.01.T01:intron 25.0%
!! ATTTCAATTGTGAAAAGTGT+TGG - Chr4:67281077-67281096 None:intergenic 25.0%
!! GACTACTTGTAGTATTATTT+TGG + Chr4:67280062-67280081 MsG0480022040.01.T01:CDS 25.0%
!! TTGTTTTCCCAATTACATTA+TGG - Chr4:67280523-67280542 None:intergenic 25.0%
!!! ATATCTAAGTCGCATTTTTT+TGG - Chr4:67279544-67279563 None:intergenic 25.0%
!!! ATCATAGTTATTTTTCCTAG+CGG + Chr4:67280555-67280574 MsG0480022040.01.T01:intron 25.0%
!!! ATTTTCAGGGGTTATAATAT+TGG + Chr4:67278265-67278284 MsG0480022040.01.T01:intron 25.0%
!!! GAACAGTTTTAAGCATTTAA+AGG - Chr4:67280992-67281011 None:intergenic 25.0%
!!! TACTTGTAGTATTATTTTGG+AGG + Chr4:67280065-67280084 MsG0480022040.01.T01:CDS 25.0%
!!! TGGTTTGTATTGTATTTTCA+GGG + Chr4:67278252-67278271 MsG0480022040.01.T01:intron 25.0%
!!! TTGGTTTGTATTGTATTTTC+AGG + Chr4:67278251-67278270 MsG0480022040.01.T01:intron 25.0%
AAATTAGCAGAATCAATGGA+TGG + Chr4:67278786-67278805 MsG0480022040.01.T01:intron 30.0%
AATAAGAGATAGGGATTAGA+GGG + Chr4:67278674-67278693 MsG0480022040.01.T01:intron 30.0%
AATCTAACCCAACTAACTAA+GGG - Chr4:67278640-67278659 None:intergenic 30.0%
AATTGTTCGTTTATACAGGT+TGG + Chr4:67279986-67280005 MsG0480022040.01.T01:intron 30.0%
ACATCTTTCATTGCTAAGAA+AGG - Chr4:67280481-67280500 None:intergenic 30.0%
AGAAGAGCTGATTAAAAAAC+TGG - Chr4:67280245-67280264 None:intergenic 30.0%
ATAGAAGCTTACCATATCTA+AGG - Chr4:67280178-67280197 None:intergenic 30.0%
ATCTTTCATTGCTAAGAAAG+GGG - Chr4:67280479-67280498 None:intergenic 30.0%
ATGTCATGGTTTCTGTAAAT+CGG + Chr4:67278512-67278531 MsG0480022040.01.T01:intron 30.0%
ATGTTTACTGACCATTATGT+TGG - Chr4:67279470-67279489 None:intergenic 30.0%
ATTCTTCTACATTCATACTC+AGG + Chr4:67280678-67280697 MsG0480022040.01.T01:intron 30.0%
CAAAAGCTTAGTAAGTTAGT+TGG + Chr4:67278444-67278463 MsG0480022040.01.T01:intron 30.0%
CATCTTTCATTGCTAAGAAA+GGG - Chr4:67280480-67280499 None:intergenic 30.0%
CCAAAAACTCATCAATCAAA+CGG - Chr4:67278294-67278313 None:intergenic 30.0%
CCAAACAGTCAAATTCATAT+CGG - Chr4:67278235-67278254 None:intergenic 30.0%
CCTGTATAAACGAACAATTA+AGG - Chr4:67279985-67280004 None:intergenic 30.0%
CCTTAATTGTTCGTTTATAC+AGG + Chr4:67279982-67280001 MsG0480022040.01.T01:intron 30.0%
CTGATTAAAAAACTGGTGAA+TGG - Chr4:67280238-67280257 None:intergenic 30.0%
CTTTCATTAAGAATGCTGTT+TGG + Chr4:67279600-67279619 MsG0480022040.01.T01:intron 30.0%
TACTACTGCAACATATTAAG+CGG + Chr4:67280138-67280157 MsG0480022040.01.T01:CDS 30.0%
TCTTCTCTATTGAGAGAATT+GGG + Chr4:67279109-67279128 MsG0480022040.01.T01:intron 30.0%
TGAAAAGTGAAGACATACTT+TGG - Chr4:67279659-67279678 None:intergenic 30.0%
TGCTTTGCATTCATTCAAAT+CGG + Chr4:67279308-67279327 MsG0480022040.01.T01:intron 30.0%
TGGTCAATTTATAGATGTCA+TGG + Chr4:67278498-67278517 MsG0480022040.01.T01:intron 30.0%
TGTTTACTGACCATTATGTT+GGG - Chr4:67279469-67279488 None:intergenic 30.0%
TTCCCGAAACTAAATTATTC+TGG + Chr4:67279437-67279456 MsG0480022040.01.T01:intron 30.0%
TTCTTCTCTATTGAGAGAAT+TGG + Chr4:67279108-67279127 MsG0480022040.01.T01:intron 30.0%
! ACTAAGCTTTTGTTCACAAT+GGG - Chr4:67278436-67278455 None:intergenic 30.0%
! ATGGTTTATCTTGTTTGGAA+AGG + Chr4:67280363-67280382 MsG0480022040.01.T01:intron 30.0%
! GGTTTGTATTGTATTTTCAG+GGG + Chr4:67278253-67278272 MsG0480022040.01.T01:intron 30.0%
! TACTAAGCTTTTGTTCACAA+TGG - Chr4:67278437-67278456 None:intergenic 30.0%
! TGGTTTATCTTGTTTGGAAA+GGG + Chr4:67280364-67280383 MsG0480022040.01.T01:intron 30.0%
!! CTTTTGTTTCATGTTGTAGT+TGG + Chr4:67279764-67279783 MsG0480022040.01.T01:intron 30.0%
!! TATTTTGGAGGATAATCCTT+TGG + Chr4:67280077-67280096 MsG0480022040.01.T01:CDS 30.0%
AAAATGCCAATATATGTGGC+AGG - Chr4:67279260-67279279 None:intergenic 35.0%
AACAATGATGAAATGCAGTC+TGG + Chr4:67279371-67279390 MsG0480022040.01.T01:intron 35.0%
AAGTTGAAAACAAACCGATC+AGG - Chr4:67278976-67278995 None:intergenic 35.0%
ACACTCAAATTTCAGAAGAC+TGG - Chr4:67280307-67280326 None:intergenic 35.0%
ACTTTAGACAATGGGAATCA+TGG + Chr4:67278947-67278966 MsG0480022040.01.T01:intron 35.0%
AGCAACTACAAACTCATAAG+AGG - Chr4:67279292-67279311 None:intergenic 35.0%
AGGGAAATTAGCAGAATCAA+TGG + Chr4:67278782-67278801 MsG0480022040.01.T01:intron 35.0%
ATATTAAGCGGAGTCATTAG+AGG + Chr4:67280150-67280169 MsG0480022040.01.T01:CDS 35.0%
ATCAATGGCGATAACGATAA+TGG + Chr4:67278758-67278777 MsG0480022040.01.T01:intron 35.0%
ATCTAACCCAACTAACTAAG+GGG - Chr4:67278639-67278658 None:intergenic 35.0%
ATTAGACCAGATGCAATAGA+GGG + Chr4:67279231-67279250 MsG0480022040.01.T01:intron 35.0%
CAATCTAACCCAACTAACTA+AGG - Chr4:67278641-67278660 None:intergenic 35.0%
CCGATATGAATTTGACTGTT+TGG + Chr4:67278232-67278251 MsG0480022040.01.T01:intron 35.0%
CTTTAGACAATGGGAATCAT+GGG + Chr4:67278948-67278967 MsG0480022040.01.T01:intron 35.0%
GAAGAAGGACTTTAGACAAT+GGG + Chr4:67278939-67278958 MsG0480022040.01.T01:intron 35.0%
GAATAAGAGATAGGGATTAG+AGG + Chr4:67278673-67278692 MsG0480022040.01.T01:intron 35.0%
GCTTAGTAAGTTAGTTGGTT+AGG + Chr4:67278449-67278468 MsG0480022040.01.T01:intron 35.0%
GTAAGTTAGTTGGTTAGGTT+AGG + Chr4:67278454-67278473 MsG0480022040.01.T01:intron 35.0%
GTAATATGGGAGCTTATCAA+TGG + Chr4:67278743-67278762 MsG0480022040.01.T01:intron 35.0%
GTTTCATCAAAATGCACACA+AGG - Chr4:67280883-67280902 None:intergenic 35.0%
TAACATTGAACGCGTTAATG+CGG + Chr4:67278074-67278093 MsG0480022040.01.T01:CDS 35.0%
TAGGTTAGGCTATGATTAGA+GGG + Chr4:67278468-67278487 MsG0480022040.01.T01:intron 35.0%
TATGATATTGCCTTTGACTG+CGG + Chr4:67280937-67280956 MsG0480022040.01.T01:three_prime_UTR 35.0%
TCATACTCAGGTATCAATGA+AGG + Chr4:67280690-67280709 MsG0480022040.01.T01:intron 35.0%
TCCTTATATGGATACTCTTC+TGG - Chr4:67280793-67280812 None:intergenic 35.0%
TCTTTGAATCAAGACAGACA+AGG + Chr4:67278821-67278840 MsG0480022040.01.T01:intron 35.0%
TGAAGAAGGACTTTAGACAA+TGG + Chr4:67278938-67278957 MsG0480022040.01.T01:intron 35.0%
TGATATTCACCTTCAGAAGA+TGG + Chr4:67279006-67279025 MsG0480022040.01.T01:intron 35.0%
TGGCTAAATCTAATGTCTCA+AGG + Chr4:67278311-67278330 MsG0480022040.01.T01:CDS 35.0%
TGTCATGGTTTCTGTAAATC+GGG + Chr4:67278513-67278532 MsG0480022040.01.T01:intron 35.0%
TGTGATGTGTATCAGTAAGA+GGG + Chr4:67279068-67279087 MsG0480022040.01.T01:intron 35.0%
TTAGGTTAGGCTATGATTAG+AGG + Chr4:67278467-67278486 MsG0480022040.01.T01:intron 35.0%
TTGGACGGCATAACTTATAA+TGG - Chr4:67279525-67279544 None:intergenic 35.0%
! AAGCATTTTCTCAAGCCAAA+GGG - Chr4:67281119-67281138 None:intergenic 35.0%
! CCGTTTGATTGATGAGTTTT+TGG + Chr4:67278291-67278310 MsG0480022040.01.T01:CDS 35.0%
! CTTCATCCTTGTTATGTCAT+AGG + Chr4:67281019-67281038 MsG0480022040.01.T01:three_prime_UTR 35.0%
! TATAGACCTTGATAGTTGTC+AGG - Chr4:67280120-67280139 None:intergenic 35.0%
! TATTTTGCAATTAACACCGC+CGG + Chr4:67278909-67278928 MsG0480022040.01.T01:intron 35.0%
! TTGTAAAGTTTAGAGCCCTT+TGG + Chr4:67281101-67281120 MsG0480022040.01.T01:three_prime_UTR 35.0%
!! AAAGCATTTTCTCAAGCCAA+AGG - Chr4:67281120-67281139 None:intergenic 35.0%
!! GGTTGGTTTAAAATGTTCCT+CGG + Chr4:67280003-67280022 MsG0480022040.01.T01:intron 35.0%
!! TCCAGAAGAGTATCCATATA+AGG + Chr4:67280789-67280808 MsG0480022040.01.T01:CDS 35.0%
!!! CTAAGTCGCATTTTTTTGGA+CGG - Chr4:67279540-67279559 None:intergenic 35.0%
AAAACCAAGTAGCAGCACAT+AGG - Chr4:67279875-67279894 None:intergenic 40.0%
AATTGGGACCTTTAGACATG+TGG + Chr4:67279125-67279144 MsG0480022040.01.T01:intron 40.0%
ACATGACATGCAATGTGGAT+CGG + Chr4:67280586-67280605 MsG0480022040.01.T01:intron 40.0%
AGCTCAACAAAGTCTACCAA+AGG - Chr4:67280096-67280115 None:intergenic 40.0%
ATCTGAGTTCTCTCTAACGA+TGG + Chr4:67278014-67278033 MsG0480022040.01.T01:exon 40.0%
ATGATATTGCCTTTGACTGC+GGG + Chr4:67280938-67280957 MsG0480022040.01.T01:three_prime_UTR 40.0%
ATGTGACATGACATGCAATG+TGG + Chr4:67280581-67280600 MsG0480022040.01.T01:intron 40.0%
ATGTGTATCAGTAAGAGGGA+GGG + Chr4:67279072-67279091 MsG0480022040.01.T01:intron 40.0%
ATTGCTTACAGATCTGGAAG+AGG + Chr4:67278134-67278153 MsG0480022040.01.T01:CDS 40.0%
CAGAAGATGGTGAATGTTCA+AGG + Chr4:67279019-67279038 MsG0480022040.01.T01:intron 40.0%
CATTAGACCAGATGCAATAG+AGG + Chr4:67279230-67279249 MsG0480022040.01.T01:intron 40.0%
CATTAGAGGAGCCTTAGATA+TGG + Chr4:67280164-67280183 MsG0480022040.01.T01:CDS 40.0%
CTCAAGCCTATGACATAACA+AGG - Chr4:67281028-67281047 None:intergenic 40.0%
CTGTGATGTGTATCAGTAAG+AGG + Chr4:67279067-67279086 MsG0480022040.01.T01:intron 40.0%
GAACATTCACCATCTTCTGA+AGG - Chr4:67279018-67279037 None:intergenic 40.0%
GAAGACATACTTTGGACTTG+TGG - Chr4:67279651-67279670 None:intergenic 40.0%
GACTTGTGGCAAGATTAGAA+AGG - Chr4:67279637-67279656 None:intergenic 40.0%
TCGGCAAAATGTGTTTGACT+TGG + Chr4:67279327-67279346 MsG0480022040.01.T01:intron 40.0%
TCGTCAATTGCTTACAGATC+TGG + Chr4:67278128-67278147 MsG0480022040.01.T01:CDS 40.0%
TCTAACCCAACTAACTAAGG+GGG - Chr4:67278638-67278657 None:intergenic 40.0%
TGCAGAGTTTGGTAGAAGAA+GGG + Chr4:67278879-67278898 MsG0480022040.01.T01:intron 40.0%
TTAGACCAGATGCAATAGAG+GGG + Chr4:67279232-67279251 MsG0480022040.01.T01:intron 40.0%
TTTCATTGCTAAGAAAGGGG+AGG - Chr4:67280476-67280495 None:intergenic 40.0%
! CGGCAAAATGTGTTTGACTT+GGG + Chr4:67279328-67279347 MsG0480022040.01.T01:intron 40.0%
! CTTGTTATGTCATAGGCTTG+AGG + Chr4:67281026-67281045 MsG0480022040.01.T01:three_prime_UTR 40.0%
! GTCTAAAGTCCTTCTTCATC+TGG - Chr4:67278936-67278955 None:intergenic 40.0%
!! AGGTAGCCTGATAGTTTGTT+AGG + Chr4:67279039-67279058 MsG0480022040.01.T01:intron 40.0%
!! ATGGCGATAACGATAATGGA+AGG + Chr4:67278762-67278781 MsG0480022040.01.T01:intron 40.0%
!! CAAAATGTGTTTGACTTGGG+GGG + Chr4:67279331-67279350 MsG0480022040.01.T01:intron 40.0%
!! GCAAAATGTGTTTGACTTGG+GGG + Chr4:67279330-67279349 MsG0480022040.01.T01:intron 40.0%
!! GGCAAAATGTGTTTGACTTG+GGG + Chr4:67279329-67279348 MsG0480022040.01.T01:intron 40.0%
!! GTGTTGGCTCATCATACAAT+AGG - Chr4:67281061-67281080 None:intergenic 40.0%
!! TGGCGATAACGATAATGGAA+GGG + Chr4:67278763-67278782 MsG0480022040.01.T01:intron 40.0%
AAGTCCTTCTTCATCTGGTC+CGG - Chr4:67278931-67278950 None:intergenic 45.0%
AGGTTACCCCCTTAGTTAGT+TGG + Chr4:67278629-67278648 MsG0480022040.01.T01:intron 45.0%
AGTAAGAGGGAGGGATTAGA+AGG + Chr4:67279081-67279100 MsG0480022040.01.T01:intron 45.0%
CATGACATGCAATGTGGATC+GGG + Chr4:67280587-67280606 MsG0480022040.01.T01:intron 45.0%
CCACATCTCCACATGTCTAA+AGG - Chr4:67279136-67279155 None:intergenic 45.0%
CCTTTAGACATGTGGAGATG+TGG + Chr4:67279133-67279152 MsG0480022040.01.T01:intron 45.0%
CTGCAGAGTTTGGTAGAAGA+AGG + Chr4:67278878-67278897 MsG0480022040.01.T01:intron 45.0%
GACTGCTGATGTCATTGCTA+AGG + Chr4:67278351-67278370 MsG0480022040.01.T01:CDS 45.0%
GACTGTGAGCACATTCTGAT+TGG + Chr4:67279829-67279848 MsG0480022040.01.T01:intron 45.0%
GAGCTCTTCACTCTCACATA+TGG + Chr4:67278096-67278115 MsG0480022040.01.T01:CDS 45.0%
GAGCTTCCTGACAACTATCA+AGG + Chr4:67280111-67280130 MsG0480022040.01.T01:CDS 45.0%
GATGTGTATCAGTAAGAGGG+AGG + Chr4:67279071-67279090 MsG0480022040.01.T01:intron 45.0%
GCCTAGCCTAACAAACTATC+AGG - Chr4:67279048-67279067 None:intergenic 45.0%
GGTTACCCCCTTAGTTAGTT+GGG + Chr4:67278630-67278649 MsG0480022040.01.T01:intron 45.0%
TATGATTAGAGGGACGCACA+TGG + Chr4:67278478-67278497 MsG0480022040.01.T01:intron 45.0%
TCAAGACAGACAAGGACATG+AGG + Chr4:67278829-67278848 MsG0480022040.01.T01:intron 45.0%
TCAGGTATCAATGAAGGCTG+AGG + Chr4:67280696-67280715 MsG0480022040.01.T01:intron 45.0%
TCGTCTTGGCTCATTGTTGT+TGG + Chr4:67279702-67279721 MsG0480022040.01.T01:intron 45.0%
TCTTCTACCAAACTCTGCAG+TGG - Chr4:67278878-67278897 None:intergenic 45.0%
TGACCAATTGGGATGCTGAA+GGG + Chr4:67280040-67280059 MsG0480022040.01.T01:CDS 45.0%
TTCAGCATCCCAATTGGTCA+CGG - Chr4:67280040-67280059 None:intergenic 45.0%
! CTGGTTTGAGCCCAACATAA+TGG + Chr4:67279456-67279475 MsG0480022040.01.T01:intron 45.0%
! GTCATGTCACATTTTCCGCT+AGG - Chr4:67280573-67280592 None:intergenic 45.0%
!! GCCTGATAGTTTGTTAGGCT+AGG + Chr4:67279044-67279063 MsG0480022040.01.T01:intron 45.0%
AATATCGCATCGCCAGTTCG+AGG - Chr4:67278051-67278070 None:intergenic 50.0%
AGACATGTGGAGATGTGGCT+AGG + Chr4:67279138-67279157 MsG0480022040.01.T01:intron 50.0%
AGATCCTAACCCGCAGTCAA+AGG - Chr4:67280950-67280969 None:intergenic 50.0%
AGTCCCTTCAGCATCCCAAT+TGG - Chr4:67280046-67280065 None:intergenic 50.0%
ATCCCAATTGGTCACGGATG+CGG - Chr4:67280034-67280053 None:intergenic 50.0%
ATTGCCTTTGACTGCGGGTT+AGG + Chr4:67280943-67280962 MsG0480022040.01.T01:three_prime_UTR 50.0%
CAATGAAGGCTGAGGTCACT+TGG + Chr4:67280704-67280723 MsG0480022040.01.T01:CDS 50.0%
CGATAAGCCACTGCAGAGTT+TGG + Chr4:67278868-67278887 MsG0480022040.01.T01:intron 50.0%
GGCTGTTAGGCTATGCTTGT+AGG + Chr4:67279159-67279178 MsG0480022040.01.T01:intron 50.0%
GGGAATCATGGGATCCTGAT+CGG + Chr4:67278959-67278978 MsG0480022040.01.T01:intron 50.0%
GGGATTAGAGGGTCTTTGCA+AGG + Chr4:67278685-67278704 MsG0480022040.01.T01:intron 50.0%
GTGACCAATTGGGATGCTGA+AGG + Chr4:67280039-67280058 MsG0480022040.01.T01:CDS 50.0%
GTTCTCTCTAACGATGGCTC+CGG + Chr4:67278020-67278039 MsG0480022040.01.T01:exon 50.0%
TACCGCATCCGTGACCAATT+GGG + Chr4:67280029-67280048 MsG0480022040.01.T01:CDS 50.0%
TTACCGCATCCGTGACCAAT+TGG + Chr4:67280028-67280047 MsG0480022040.01.T01:CDS 50.0%
AGGTGCCCCTCTATTGCATC+TGG - Chr4:67279240-67279259 None:intergenic 55.0%
GGAGATGTGGCTAGGCTGTT+AGG + Chr4:67279146-67279165 MsG0480022040.01.T01:intron 55.0%
TCCTTCTTCATCTGGTCCGG+CGG - Chr4:67278928-67278947 None:intergenic 55.0%
TCGCGCAAAGCAGAAGCAGA+AGG + Chr4:67277967-67277986 MsG0480022040.01.T01:five_prime_UTR 55.0%
! CGGACCTATGTGCTGCTACT+TGG + Chr4:67279868-67279887 MsG0480022040.01.T01:intron 55.0%
! GGGGCACCTGCCACATATAT+TGG + Chr4:67279251-67279270 MsG0480022040.01.T01:intron 55.0%
ACCGCCGGACCAGATGAAGA+AGG + Chr4:67278924-67278943 MsG0480022040.01.T01:intron 60.0%
CGGGAGACGCTTGAAGTTCG+AGG + Chr4:67278532-67278551 MsG0480022040.01.T01:intron 60.0%
TCACGGATGCGGTAACACCG+AGG - Chr4:67280023-67280042 None:intergenic 60.0%
TCGCCAGTTCGAGGAGCAAC+CGG - Chr4:67278042-67278061 None:intergenic 60.0%
TGGCTACGAGATGCGCTTCG+AGG + Chr4:67280724-67280743 MsG0480022040.01.T01:CDS 60.0%
GCTCCGGTTGCTCCTCGAAC+TGG + Chr4:67278036-67278055 MsG0480022040.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 67277964 67281247 67277964 ID=MsG0480022040.01;Name=MsG0480022040.01
Chr4 mRNA 67277964 67281247 67277964 ID=MsG0480022040.01.T01;Parent=MsG0480022040.01;Name=MsG0480022040.01.T01;_AED=0.48;_eAED=0.48;_QI=69|0.66|0.75|1|0.66|0.75|4|425|192
Chr4 exon 67277964 67278187 67277964 ID=MsG0480022040.01.T01:exon:8207;Parent=MsG0480022040.01.T01
Chr4 exon 67278273 67278391 67278273 ID=MsG0480022040.01.T01:exon:8208;Parent=MsG0480022040.01.T01
Chr4 exon 67280004 67280185 67280004 ID=MsG0480022040.01.T01:exon:8209;Parent=MsG0480022040.01.T01
Chr4 exon 67280700 67281247 67280700 ID=MsG0480022040.01.T01:exon:8210;Parent=MsG0480022040.01.T01
Chr4 five_prime_UTR 67277964 67278032 67277964 ID=MsG0480022040.01.T01:five_prime_utr;Parent=MsG0480022040.01.T01
Chr4 CDS 67278033 67278187 67278033 ID=MsG0480022040.01.T01:cds;Parent=MsG0480022040.01.T01
Chr4 CDS 67278273 67278391 67278273 ID=MsG0480022040.01.T01:cds;Parent=MsG0480022040.01.T01
Chr4 CDS 67280004 67280185 67280004 ID=MsG0480022040.01.T01:cds;Parent=MsG0480022040.01.T01
Chr4 CDS 67280700 67280822 67280700 ID=MsG0480022040.01.T01:cds;Parent=MsG0480022040.01.T01
Chr4 three_prime_UTR 67280823 67281247 67280823 ID=MsG0480022040.01.T01:three_prime_utr;Parent=MsG0480022040.01.T01
Gene Sequence

>MsG0480022040.01.T01

ATGGCTCCGGTTGCTCCTCGAACTGGCGATGCGATATTTGCTAACATTGAACGCGTTAATGCGGAGCTCTTCACTCTCACATATGGTGCAATTGTTCGTCAATTGCTTACAGATCTGGAAGAGGTTGATGAAGTCAACAAGCAGCTAGATCAAATGGGTTATAATATTGGAATCCGTTTGATTGATGAGTTTTTGGCTAAATCTAATGTCTCAAGGTGTGTTGATTTCAGAGAGACTGCTGATGTCATTGCTAAGGTATTTCTATTGTTGTTTTGTTGGTTTAAAATGTTCCTCGGTGTTACCGCATCCGTGACCAATTGGGATGCTGAAGGGACTACTTGTAGTATTATTTTGGAGGATAATCCTTTGGTAGACTTTGTTGAGCTTCCTGACAACTATCAAGGTCTATACTACTGCAACATATTAAGCGGAGTCATTAGAGGAGCCTTAGATATGGTATCAATGAAGGCTGAGGTCACTTGGCTACGAGATGCGCTTCGAGGTGATGATGTGTTTGAGTTGCAAGTAAAACTTCTCAAGCAAGTTCCAGAAGAGTATCCATATAAGGATGATGAGTAA
Protein sequence

>MsG0480022040.01.T01

MAPVAPRTGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVDEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFRETADVIAKVFLLLFCWFKMFLGVTASVTNWDAEGTTCSIILEDNPLVDFVELPDNYQGLYYCNILSGVIRGALDMVSMKAEVTWLRDALRGDDVFELQVKLLKQVPEEYPYKDDE*