AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018056.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018056.01.T01 MTR_3g118030 66.221 299 18 4 28 251 2 292 4.78e-125 357
MsG0380018056.01.T01 MTR_8g028125 60.738 298 34 4 28 250 2 291 3.32e-114 330
MsG0380018056.01.T01 MTR_4g016680 56.452 124 40 3 123 240 8 123 2.41e-35 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018056.01.T01 AT5G39740 55.184 299 51 4 28 251 2 292 3.89e-103 302
MsG0380018056.01.T01 AT5G39740 55.184 299 51 4 28 251 2 292 3.89e-103 302
MsG0380018056.01.T01 AT3G25520 55.184 299 51 4 28 251 2 292 9.95e-102 298
MsG0380018056.01.T01 AT3G25520 55.184 299 51 4 28 251 2 292 9.95e-102 298
MsG0380018056.01.T01 AT3G25520 55.319 188 31 2 109 251 2 181 1.14e-60 190

Find 68 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTGCACTGGTCTCCTT+TGG 0.254636 3:-103818827 MsG0380018056.01.T01:CDS
TGCACCAAAGACCCGGTTTC+CGG 0.261045 3:+103818588 None:intergenic
TCCTCGTAGGGAGCTTCTTC+AGG 0.289683 3:+103817882 None:intergenic
TCCTTTGGTGGCTGTTTCTC+AGG 0.324748 3:+103818091 None:intergenic
GGCTTCAGGGAGCTTTGGAC+GGG 0.327426 3:-103818482 MsG0380018056.01.T01:intron
ACCACCGGAAACCGGGTCTT+TGG 0.336386 3:-103818592 MsG0380018056.01.T01:CDS
TTATTGCACTGGTCTCCTTT+GGG 0.355854 3:-103818826 MsG0380018056.01.T01:CDS
AGTTCTTAAAACTCTTGAAA+TGG 0.366221 3:-103818796 MsG0380018056.01.T01:CDS
TGATACCTCTTGTGTTCCTT+TGG 0.367997 3:+103818076 None:intergenic
AATCGAGGAACTATACAAAA+AGG 0.377398 3:-103818152 MsG0380018056.01.T01:CDS
ATTGTCTCTGCTACCATTGC+TGG 0.382260 3:-103819012 MsG0380018056.01.T01:CDS
TTAAGACCACCACCGGAAAC+CGG 0.405019 3:-103818600 MsG0380018056.01.T01:CDS
TGTTTGGCTTCAGGGAGCTT+TGG 0.408256 3:-103818487 MsG0380018056.01.T01:intron
GTGAAATTCAAGAGAAAGAG+AGG 0.417514 3:-103819221 MsG0380018056.01.T01:CDS
TACCTCTTGTGTTCCTTTGG+TGG 0.421148 3:+103818079 None:intergenic
GAGAGCACGGAATGGCCTCC+TGG 0.423509 3:+103818639 None:intergenic
TGGCTTCAGGGAGCTTTGGA+CGG 0.456348 3:-103818483 MsG0380018056.01.T01:intron
CATAGTTAGTAAGGCCTACA+TGG 0.460963 3:+103818938 None:intergenic
CCTCACTTTGGCCTCCATGT+AGG 0.463629 3:-103818952 MsG0380018056.01.T01:CDS
AAAGACCCGGTTTCCGGTGG+TGG 0.468463 3:+103818594 None:intergenic
TTTGTCTTTCTTTCCTCGTA+GGG 0.469043 3:+103817870 None:intergenic
CTTTGTCTTTCTTTCCTCGT+AGG 0.473777 3:+103817869 None:intergenic
TTCCGTGCTCTCCTTGATGT+TGG 0.475927 3:-103818628 MsG0380018056.01.T01:CDS
TCTTATATTACTCAGGCAAC+CGG 0.479611 3:-103818691 MsG0380018056.01.T01:intron
TTCTTCAGGTTGTACCTGCT+CGG 0.487421 3:+103817896 None:intergenic
GCTTCAGGGAGCTTTGGACG+GGG 0.489494 3:-103818481 MsG0380018056.01.T01:intron
TACCTGCAGCATAGTTAGTA+AGG 0.490657 3:+103818929 None:intergenic
CGTGTGTTTGTCTTCCGAGC+AGG 0.493661 3:-103817910 MsG0380018056.01.T01:CDS
CTTCAGGGAGCTTTGGACGG+GGG 0.497730 3:-103818480 MsG0380018056.01.T01:intron
CAAGCTCTCAATTCTGCAGC+CGG 0.507707 3:-103817831 MsG0380018056.01.T01:CDS
GTCATCCTCATCATCATCTC+CGG 0.510253 3:+103817812 None:intergenic
ATATTCCTCACAGCGACAAA+AGG 0.513989 3:-103818452 MsG0380018056.01.T01:intron
ATGTTACCAGCTTATTGCAC+TGG 0.517859 3:-103818837 MsG0380018056.01.T01:intron
CTGTGGAACCAGCTGACTCC+AGG 0.519286 3:-103818657 MsG0380018056.01.T01:CDS
GTTGATTCAGGCATTTGTGA+AGG 0.519616 3:-103819279 MsG0380018056.01.T01:intron
CCGGGTCTTTGGTGCACTCA+AGG 0.524232 3:-103818581 MsG0380018056.01.T01:intron
AATGGCCTCCTGGAGTCAGC+TGG 0.528100 3:+103818649 None:intergenic
GCACATGAGCTTCCTCACTT+TGG 0.534108 3:-103818964 MsG0380018056.01.T01:CDS
GAAATGGATGATCAGTATGA+AGG 0.545359 3:-103818780 MsG0380018056.01.T01:CDS
GGTCTTGTTAAGACCACCAC+CGG 0.557334 3:-103818607 MsG0380018056.01.T01:CDS
TTCCACAGAATAATCCTCTC+CGG 0.558152 3:+103818672 None:intergenic
CCTTGAGTGCACCAAAGACC+CGG 0.561480 3:+103818581 None:intergenic
GGCCTTACTAACTATGCTGC+AGG 0.566671 3:-103818931 MsG0380018056.01.T01:intron
TAAGACCACCACCGGAAACC+GGG 0.570064 3:-103818599 MsG0380018056.01.T01:CDS
TGGTGAAATGGCTTCTGATG+AGG 0.574708 3:-103821113 None:intergenic
GATTGAGGGATCTGCACGAA+TGG 0.575419 3:+103818120 None:intergenic
GCCTGAGAAACAGCCACCAA+AGG 0.579930 3:-103818092 MsG0380018056.01.T01:CDS
AAGAACAATATCACCAGCAA+TGG 0.583771 3:+103818999 None:intergenic
CGAGGAAAGAAAGACAAAGT+TGG 0.591281 3:-103817865 MsG0380018056.01.T01:CDS
TTCAGTGAATATATCAAGCG+TGG 0.592838 3:-103818190 MsG0380018056.01.T01:intron
AAGCGTGGAATTGAAGCGGA+TGG 0.593465 3:-103818175 MsG0380018056.01.T01:CDS
GACCAACATCAAGGAGAGCA+CGG 0.604422 3:+103818626 None:intergenic
TAAGAACTCGGCGAGCCCAA+AGG 0.605818 3:+103818811 None:intergenic
TCTTAACAAGACCAACATCA+AGG 0.618405 3:+103818617 None:intergenic
ACCAAAGACCCGGTTTCCGG+TGG 0.622290 3:+103818591 None:intergenic
TATCAAGCGTGGAATTGAAG+CGG 0.625635 3:-103818179 MsG0380018056.01.T01:CDS
TGAAATTCAAGAGAAAGAGA+GGG 0.648380 3:-103819220 MsG0380018056.01.T01:intron
AATTGAAGCGGATGGAATCG+AGG 0.652387 3:-103818167 MsG0380018056.01.T01:CDS
ACATCAAGGAGAGCACGGAA+TGG 0.653230 3:+103818631 None:intergenic
AGCCACCAAAGGAACACAAG+AGG 0.664029 3:-103818081 MsG0380018056.01.T01:intron
TGCAGCCGGAGATGATGATG+AGG 0.670180 3:-103817817 MsG0380018056.01.T01:CDS
TATTACTCAGGCAACCGGAG+AGG 0.678581 3:-103818686 MsG0380018056.01.T01:intron
TGGAACCAGCTGACTCCAGG+AGG 0.680812 3:-103818654 MsG0380018056.01.T01:CDS
CCTACATGGAGGCCAAAGTG+AGG 0.682005 3:+103818952 None:intergenic
AGTTAGTAAGGCCTACATGG+AGG 0.688944 3:+103818941 None:intergenic
ACCTGAAGAAGCTCCCTACG+AGG 0.700099 3:-103817883 MsG0380018056.01.T01:CDS
AACCGGAGAGGATTATTCTG+TGG 0.701124 3:-103818674 MsG0380018056.01.T01:CDS
TCAGTATGAAGGCAATGTTG+AGG 0.719344 3:-103818769 MsG0380018056.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAATTAAAAAAATGAAA+AGG + Chr3:103820599-103820618 None:intergenic 10.0%
!!! ATTTTTCAATTATTTTGTTA+TGG + Chr3:103819022-103819041 None:intergenic 10.0%
!!! TTTCATTTTTTTAATTTGTA+AGG - Chr3:103820599-103820618 MsG0380018056.01.T01:intron 10.0%
!! ATGATGTAACTTTATAATTA+TGG - Chr3:103818072-103818091 MsG0380018056.01.T01:intron 15.0%
!! TGACATTGATATTTATTAAT+CGG - Chr3:103820396-103820415 MsG0380018056.01.T01:intron 15.0%
!!! AAGGTATTAAAATTGTAAAT+TGG + Chr3:103818128-103818147 None:intergenic 15.0%
!!! ACGATTAATTTGATATTATA+TGG + Chr3:103820046-103820065 None:intergenic 15.0%
!!! ATATTATATGGATTAAAAAG+AGG + Chr3:103820034-103820053 None:intergenic 15.0%
!!! TATATTTTTAAGGGATATTA+TGG + Chr3:103818998-103819017 None:intergenic 15.0%
!!! TGTTATGGATATATTTTTAA+GGG + Chr3:103819007-103819026 None:intergenic 15.0%
!!! TTGTTATGGATATATTTTTA+AGG + Chr3:103819008-103819027 None:intergenic 15.0%
!! AAATACTACTAATTCAAACA+GGG + Chr3:103820908-103820927 None:intergenic 20.0%
!! AAGTAGTAATAATAATGGTT+TGG + Chr3:103819848-103819867 None:intergenic 20.0%
!! ATAGATTATTGTTAATCTTC+CGG - Chr3:103819040-103819059 MsG0380018056.01.T01:CDS 20.0%
!! GACATTGATATTTATTAATC+GGG - Chr3:103820397-103820416 MsG0380018056.01.T01:intron 20.0%
!! GTTCAAATAATGTCTTTATT+GGG - Chr3:103820572-103820591 MsG0380018056.01.T01:intron 20.0%
!! TCTACAAGTAGTAATAATAA+TGG + Chr3:103819853-103819872 None:intergenic 20.0%
!! TGTTCAAATAATGTCTTTAT+TGG - Chr3:103820571-103820590 MsG0380018056.01.T01:intron 20.0%
!! TTATAAAGTTACATCATCAT+TGG + Chr3:103818069-103818088 None:intergenic 20.0%
!! TTCATAATTATCTCTTGAAT+TGG + Chr3:103818768-103818787 None:intergenic 20.0%
!!! ATCTTTCTCTCTATTATTTT+CGG + Chr3:103818643-103818662 None:intergenic 20.0%
!!! ATTTTTTTTGTAGACATTGA+TGG - Chr3:103820668-103820687 MsG0380018056.01.T01:intron 20.0%
!!! TAATAATAATGGTTTGGTTA+GGG + Chr3:103819842-103819861 None:intergenic 20.0%
! AGTTCTTAAAACTCTTGAAA+TGG - Chr3:103820113-103820132 MsG0380018056.01.T01:intron 25.0%
! ATATATCAGCTATCAAATGT+GGG - Chr3:103818599-103818618 MsG0380018056.01.T01:CDS 25.0%
! ATTTGAACATACCTTCATAT+AGG + Chr3:103820560-103820579 None:intergenic 25.0%
! GAAATACTACTAATTCAAAC+AGG + Chr3:103820909-103820928 None:intergenic 25.0%
! GAGTAATATAAGACATACAA+AGG + Chr3:103820211-103820230 None:intergenic 25.0%
! GTTAGTTAGTTAGTTAAAAG+AGG + Chr3:103819594-103819613 None:intergenic 25.0%
! TAATATTTGTTCAAGTGTAC+AGG + Chr3:103818099-103818118 None:intergenic 25.0%
! TAGGGATTGAAAATTAAGTA+TGG + Chr3:103819824-103819843 None:intergenic 25.0%
! TATATATCAGCTATCAAATG+TGG - Chr3:103818598-103818617 MsG0380018056.01.T01:CDS 25.0%
! TATGATAGTAGTTCATAGTT+TGG + Chr3:103818522-103818541 None:intergenic 25.0%
! TGTCATACATTACTTACATT+CGG + Chr3:103819104-103819123 None:intergenic 25.0%
! TGTTAACAATGAACCTTAAA+GGG + Chr3:103818162-103818181 None:intergenic 25.0%
! TTGTATGTCTTATATTACTC+AGG - Chr3:103820211-103820230 MsG0380018056.01.T01:intron 25.0%
!! AAACGAAAAAGTATGAACAT+AGG + Chr3:103818429-103818448 None:intergenic 25.0%
!! AACAACAAAAATTTGAAGCT+TGG + Chr3:103818017-103818036 None:intergenic 25.0%
!! ATAACAAAAAAAGCACAGAT+TGG + Chr3:103818331-103818350 None:intergenic 25.0%
!! ATTTATTAATCGGGTTTGTT+TGG - Chr3:103820406-103820425 MsG0380018056.01.T01:intron 25.0%
!! CAGTTAAAAGAGAGTTTTTA+GGG + Chr3:103819442-103819461 None:intergenic 25.0%
!! GACTATTTACTATTGATGAT+TGG - Chr3:103820870-103820889 MsG0380018056.01.T01:intron 25.0%
!!! GAAATGGTTTTGATATTTTC+AGG + Chr3:103820702-103820721 None:intergenic 25.0%
!!! GAGTCTATTTTTATAATGGA+TGG - Chr3:103819274-103819293 MsG0380018056.01.T01:intron 25.0%
!!! GTAATAATAATGGTTTGGTT+AGG + Chr3:103819843-103819862 None:intergenic 25.0%
!!! TAAAGAATGTTTGTTGATTC+AGG - Chr3:103819618-103819637 MsG0380018056.01.T01:intron 25.0%
!!! TATTTTTATAATGGATGGAG+TGG - Chr3:103819279-103819298 MsG0380018056.01.T01:intron 25.0%
!!! TCGTTATAGTTTTGTTAACT+AGG - Chr3:103818542-103818561 MsG0380018056.01.T01:intron 25.0%
!!! TTTCAAGAGTTTTAAGAACT+CGG + Chr3:103820113-103820132 None:intergenic 25.0%
AATCGAGGAACTATACAAAA+AGG - Chr3:103820757-103820776 MsG0380018056.01.T01:intron 30.0%
AATGAGCAAATAAAGAGCTA+TGG + Chr3:103818041-103818060 None:intergenic 30.0%
ACATCATAACCAGATATTAC+TGG + Chr3:103818845-103818864 None:intergenic 30.0%
ATCATAACCAGATATTACTG+GGG + Chr3:103818843-103818862 None:intergenic 30.0%
CATCATAACCAGATATTACT+GGG + Chr3:103818844-103818863 None:intergenic 30.0%
GAGAAAGATATTGTGTATCT+TGG - Chr3:103818654-103818673 MsG0380018056.01.T01:CDS 30.0%
GCTTGATATATTCACTGAAA+TGG + Chr3:103820718-103820737 None:intergenic 30.0%
GTCATACATTACTTACATTC+GGG + Chr3:103819103-103819122 None:intergenic 30.0%
GTGTTAACAATGAACCTTAA+AGG + Chr3:103818163-103818182 None:intergenic 30.0%
GTTAGTTAGTTAAAAGAGGA+TGG + Chr3:103819590-103819609 None:intergenic 30.0%
TATCAATGTCACAAGAATAG+AGG + Chr3:103820387-103820406 None:intergenic 30.0%
TGAAAATTAAGTATGGAGTG+TGG + Chr3:103819817-103819836 None:intergenic 30.0%
TGAAATTCAAGAGAAAGAGA+GGG - Chr3:103819689-103819708 MsG0380018056.01.T01:intron 30.0%
TTGTATCATCAAACCCTTTA+AGG - Chr3:103818146-103818165 MsG0380018056.01.T01:CDS 30.0%
! CCAGTTAAAAGAGAGTTTTT+AGG + Chr3:103819443-103819462 None:intergenic 30.0%
! CCTAAAAACTCTCTTTTAAC+TGG - Chr3:103819440-103819459 MsG0380018056.01.T01:intron 30.0%
! CTACACTTTTCATTTCTATG+TGG - Chr3:103820177-103820196 MsG0380018056.01.T01:intron 30.0%
! GTGTTAACTCTCTGATTTTT+AGG - Chr3:103818467-103818486 MsG0380018056.01.T01:CDS 30.0%
! TTAAAGGGTTTGATGATACA+AGG + Chr3:103818147-103818166 None:intergenic 30.0%
!!! GGTGGAGTCTATTTTTATAA+TGG - Chr3:103819270-103819289 MsG0380018056.01.T01:CDS 30.0%
AAAAAAGTCTCAAACTCCAC+AGG + Chr3:103820632-103820651 None:intergenic 35.0%
AAGAACAATATCACCAGCAA+TGG + Chr3:103819913-103819932 None:intergenic 35.0%
ACTCAAGACGCTAACAAATA+CGG - Chr3:103819745-103819764 MsG0380018056.01.T01:intron 35.0%
ATAGAAAAATGTGCCTGCAT+TGG - Chr3:103819352-103819371 MsG0380018056.01.T01:intron 35.0%
GAAATGGATGATCAGTATGA+AGG - Chr3:103820129-103820148 MsG0380018056.01.T01:intron 35.0%
GTGAAATTCAAGAGAAAGAG+AGG - Chr3:103819688-103819707 MsG0380018056.01.T01:intron 35.0%
TACATTACTTACATTCGGGT+CGG + Chr3:103819099-103819118 None:intergenic 35.0%
TAGTTCATAGTTTGGCTGAT+AGG + Chr3:103818514-103818533 None:intergenic 35.0%
TCATAACCAGATATTACTGG+GGG + Chr3:103818842-103818861 None:intergenic 35.0%
TCTTAACAAGACCAACATCA+AGG + Chr3:103820295-103820314 None:intergenic 35.0%
TCTTATATTACTCAGGCAAC+CGG - Chr3:103820218-103820237 MsG0380018056.01.T01:intron 35.0%
TGAAAAAGTTGTACTGCTTG+AGG - Chr3:103819242-103819261 MsG0380018056.01.T01:CDS 35.0%
TTACCAATCGAACAACGTAA+CGG + Chr3:103819783-103819802 None:intergenic 35.0%
TTCAGTGAATATATCAAGCG+TGG - Chr3:103820719-103820738 MsG0380018056.01.T01:intron 35.0%
TTGTACTCAAGTCGTTAATG+AGG + Chr3:103819166-103819185 None:intergenic 35.0%
TTTGTCTTTCTTTCCTCGTA+GGG + Chr3:103821042-103821061 None:intergenic 35.0%
! TACTATTGATGATTGGCAAG+TGG - Chr3:103820877-103820896 MsG0380018056.01.T01:intron 35.0%
!! AACACAAGAGGTATCACATT+AGG - Chr3:103820840-103820859 MsG0380018056.01.T01:intron 35.0%
!! ATCTTCCGGTTTTTAGAGAA+AGG - Chr3:103819054-103819073 MsG0380018056.01.T01:intron 35.0%
!! TATAATGGATGGAGTGGATT+GGG - Chr3:103819285-103819304 MsG0380018056.01.T01:intron 35.0%
!! TCTTCCGGTTTTTAGAGAAA+GGG - Chr3:103819055-103819074 MsG0380018056.01.T01:intron 35.0%
!! TTATAATGGATGGAGTGGAT+TGG - Chr3:103819284-103819303 MsG0380018056.01.T01:intron 35.0%
!! TTCACCGGAAGTACATTTTT+GGG - Chr3:103820521-103820540 MsG0380018056.01.T01:intron 35.0%
!! TTCTCAGGCTTTTTGATTGA+GGG + Chr3:103820806-103820825 None:intergenic 35.0%
!! TTTCTCAGGCTTTTTGATTG+AGG + Chr3:103820807-103820826 None:intergenic 35.0%
!!! AGAGTTTTTAGGGTTTCTCT+TGG + Chr3:103819432-103819451 None:intergenic 35.0%
!!! GAGTTTTTAGGGTTTCTCTT+GGG + Chr3:103819431-103819450 None:intergenic 35.0%
ACAAGAATAGAGGACATAGG+TGG + Chr3:103820377-103820396 None:intergenic 40.0%
ACATGTTGCTGCCTATATGA+AGG - Chr3:103820546-103820565 MsG0380018056.01.T01:intron 40.0%
AGTTGTACTGCTTGAGGAAA+AGG - Chr3:103819248-103819267 MsG0380018056.01.T01:CDS 40.0%
ATACCGTTACGTTGTTCGAT+TGG - Chr3:103819777-103819796 MsG0380018056.01.T01:intron 40.0%
ATATTCCTCACAGCGACAAA+AGG - Chr3:103820457-103820476 MsG0380018056.01.T01:intron 40.0%
ATGTTACCAGCTTATTGCAC+TGG - Chr3:103820072-103820091 MsG0380018056.01.T01:intron 40.0%
CAAGAATAGAGGACATAGGT+GGG + Chr3:103820376-103820395 None:intergenic 40.0%
CATAGTTAGTAAGGCCTACA+TGG + Chr3:103819974-103819993 None:intergenic 40.0%
CATAGTTTGGCTGATAGGTT+CGG + Chr3:103818509-103818528 None:intergenic 40.0%
CGAACAACGTAACGGTATTT+GGG + Chr3:103819775-103819794 None:intergenic 40.0%
CGAGGAAAGAAAGACAAAGT+TGG - Chr3:103821044-103821063 MsG0380018056.01.T01:intron 40.0%
CTTGAGTAATCAACGAACTC+TGG + Chr3:103819732-103819751 None:intergenic 40.0%
CTTTGTCTTTCTTTCCTCGT+AGG + Chr3:103821043-103821062 None:intergenic 40.0%
GTCACAAGAATAGAGGACAT+AGG + Chr3:103820380-103820399 None:intergenic 40.0%
GTTGTACTGCTTGAGGAAAA+GGG - Chr3:103819249-103819268 MsG0380018056.01.T01:CDS 40.0%
TACCTGCAGCATAGTTAGTA+AGG + Chr3:103819983-103820002 None:intergenic 40.0%
TATCAAGCGTGGAATTGAAG+CGG - Chr3:103820730-103820749 MsG0380018056.01.T01:intron 40.0%
TCAGTATGAAGGCAATGTTG+AGG - Chr3:103820140-103820159 MsG0380018056.01.T01:intron 40.0%
TCGAACAACGTAACGGTATT+TGG + Chr3:103819776-103819795 None:intergenic 40.0%
TGATACCTCTTGTGTTCCTT+TGG + Chr3:103820836-103820855 None:intergenic 40.0%
TTCCACAGAATAATCCTCTC+CGG + Chr3:103820240-103820259 None:intergenic 40.0%
! ATAGTGCTTCTGAAGACAAG+AGG + Chr3:103817899-103817918 None:intergenic 40.0%
! ATCCCCCTTTCTCTAAAAAC+CGG + Chr3:103819062-103819081 None:intergenic 40.0%
! GTTGATTCAGGCATTTGTGA+AGG - Chr3:103819630-103819649 MsG0380018056.01.T01:intron 40.0%
! TTATTGCACTGGTCTCCTTT+GGG - Chr3:103820083-103820102 MsG0380018056.01.T01:intron 40.0%
! TTTGTAAGGCATTCATCCTG+TGG - Chr3:103820613-103820632 MsG0380018056.01.T01:intron 40.0%
!! AGTGTCGTAGTTGATAGAGT+TGG - Chr3:103818267-103818286 MsG0380018056.01.T01:intron 40.0%
!! ATAATGGATGGAGTGGATTG+GGG - Chr3:103819286-103819305 MsG0380018056.01.T01:intron 40.0%
!! CTTCAGAAGCACTATTCTTC+AGG - Chr3:103817904-103817923 MsG0380018056.01.T01:CDS 40.0%
!! CTTCCGGTTTTTAGAGAAAG+GGG - Chr3:103819056-103819075 MsG0380018056.01.T01:intron 40.0%
!! GTTCACCGGAAGTACATTTT+TGG - Chr3:103820520-103820539 MsG0380018056.01.T01:intron 40.0%
!! TCACCGGAAGTACATTTTTG+GGG - Chr3:103820522-103820541 MsG0380018056.01.T01:intron 40.0%
!! TTCCGGTTTTTAGAGAAAGG+GGG - Chr3:103819057-103819076 MsG0380018056.01.T01:intron 40.0%
!! TTTTTAGAGAAAGGGGGATC+TGG - Chr3:103819063-103819082 MsG0380018056.01.T01:intron 40.0%
!!! AAGGTTTGCTGGTTTTGACA+AGG - Chr3:103820476-103820495 MsG0380018056.01.T01:intron 40.0%
AACCGGAGAGGATTATTCTG+TGG - Chr3:103820235-103820254 MsG0380018056.01.T01:intron 45.0%
AATTGAAGCGGATGGAATCG+AGG - Chr3:103820742-103820761 MsG0380018056.01.T01:intron 45.0%
AGTGTCCACATAAAGTGACG+AGG - Chr3:103819388-103819407 MsG0380018056.01.T01:intron 45.0%
AGTTAGTAAGGCCTACATGG+AGG + Chr3:103819971-103819990 None:intergenic 45.0%
ATTGTCTCTGCTACCATTGC+TGG - Chr3:103819897-103819916 MsG0380018056.01.T01:intron 45.0%
GAGAAAAGAGCTTGATGCTG+AGG - Chr3:103820498-103820517 MsG0380018056.01.T01:intron 45.0%
GTAATCAACGAACTCTGGCT+CGG + Chr3:103819727-103819746 None:intergenic 45.0%
GTACCATTCCGATTCCGAAT+GGG + Chr3:103819545-103819564 None:intergenic 45.0%
GTCATCCTCATCATCATCTC+CGG + Chr3:103821100-103821119 None:intergenic 45.0%
GTCCCCCAAAAATGTACTTC+CGG + Chr3:103820528-103820547 None:intergenic 45.0%
TACCTCTTGTGTTCCTTTGG+TGG + Chr3:103820833-103820852 None:intergenic 45.0%
TCAACTCCCCCAGTAATATC+TGG - Chr3:103818833-103818852 MsG0380018056.01.T01:intron 45.0%
! AATCGGGTTTGTTTGGCTTC+AGG - Chr3:103820413-103820432 MsG0380018056.01.T01:intron 45.0%
! ATCGGGTTTGTTTGGCTTCA+GGG - Chr3:103820414-103820433 MsG0380018056.01.T01:intron 45.0%
! CTTATTGCACTGGTCTCCTT+TGG - Chr3:103820082-103820101 MsG0380018056.01.T01:intron 45.0%
!! CACCGGAAGTACATTTTTGG+GGG - Chr3:103820523-103820542 MsG0380018056.01.T01:intron 45.0%
!! TAATGGATGGAGTGGATTGG+GGG - Chr3:103819287-103819306 MsG0380018056.01.T01:intron 45.0%
!! TTCAGGAGCGCTATTTCTTC+AGG - Chr3:103817937-103817956 MsG0380018056.01.T01:intron 45.0%
!! TTCTTCAGGTTGTACCTGCT+CGG + Chr3:103821016-103821035 None:intergenic 45.0%
AAGCGTGGAATTGAAGCGGA+TGG - Chr3:103820734-103820753 MsG0380018056.01.T01:intron 50.0%
AGCCACCAAAGGAACACAAG+AGG - Chr3:103820828-103820847 MsG0380018056.01.T01:intron 50.0%
AGCTTGATGCTGAGGTTCAC+CGG - Chr3:103820506-103820525 MsG0380018056.01.T01:intron 50.0%
AGGAGACCAGTGCAATAAGC+TGG + Chr3:103820081-103820100 None:intergenic 50.0%
CAACAATTCCTACTCCCAGC+TGG - Chr3:103818192-103818211 MsG0380018056.01.T01:intron 50.0%
CAAGCTCTCAATTCTGCAGC+CGG - Chr3:103821078-103821097 MsG0380018056.01.T01:CDS 50.0%
CACAGCGACAAAAGGTTTGC+TGG - Chr3:103820465-103820484 MsG0380018056.01.T01:intron 50.0%
CAGCTGGGAGTAGGAATTGT+TGG + Chr3:103818194-103818213 None:intergenic 50.0%
CGTACCATTCCGATTCCGAA+TGG + Chr3:103819546-103819565 None:intergenic 50.0%
CTTCAGGAGCAGCTTACTTC+AGG - Chr3:103817920-103817939 MsG0380018056.01.T01:intron 50.0%
GACCAACATCAAGGAGAGCA+CGG + Chr3:103820286-103820305 None:intergenic 50.0%
GATTGAGGGATCTGCACGAA+TGG + Chr3:103820792-103820811 None:intergenic 50.0%
GCACATGAGCTTCCTCACTT+TGG - Chr3:103819945-103819964 MsG0380018056.01.T01:intron 50.0%
GGCCTTACTAACTATGCTGC+AGG - Chr3:103819978-103819997 MsG0380018056.01.T01:intron 50.0%
GTACTGCTTGAGGAAAAGGG+TGG - Chr3:103819252-103819271 MsG0380018056.01.T01:CDS 50.0%
TATCCTTTGTCGCTCCAGCT+GGG + Chr3:103818209-103818228 None:intergenic 50.0%
TATTACTCAGGCAACCGGAG+AGG - Chr3:103820223-103820242 MsG0380018056.01.T01:intron 50.0%
TCTTCAGGCAGCTTGACTTC+AGG - Chr3:103817952-103817971 MsG0380018056.01.T01:intron 50.0%
TTAAGACCACCACCGGAAAC+CGG - Chr3:103820309-103820328 MsG0380018056.01.T01:intron 50.0%
TTATCCTTTGTCGCTCCAGC+TGG + Chr3:103818210-103818229 None:intergenic 50.0%
TTCCGTGCTCTCCTTGATGT+TGG - Chr3:103820281-103820300 MsG0380018056.01.T01:intron 50.0%
TTGAAGCTTGGACGCTCTGA+AGG + Chr3:103818005-103818024 None:intergenic 50.0%
! ACATCAAGGAGAGCACGGAA+TGG + Chr3:103820281-103820300 None:intergenic 50.0%
! GCAAACCTTTTGTCGCTGTG+AGG + Chr3:103820465-103820484 None:intergenic 50.0%
! TGATGACGCAGCTTCTGATG+TGG - Chr3:103817865-103817884 MsG0380018056.01.T01:CDS 50.0%
! TGTTTGGCTTCAGGGAGCTT+TGG - Chr3:103820422-103820441 MsG0380018056.01.T01:intron 50.0%
!! AATGGATGGAGTGGATTGGG+GGG - Chr3:103819288-103819307 MsG0380018056.01.T01:intron 50.0%
!! GGTCTTGTTAAGACCACCAC+CGG - Chr3:103820302-103820321 MsG0380018056.01.T01:intron 50.0%
!! TCCTTTGGTGGCTGTTTCTC+AGG + Chr3:103820821-103820840 None:intergenic 50.0%
!!! CTGCTGCTTTTCTCCAATGC+AGG + Chr3:103819368-103819387 None:intergenic 50.0%
ACCCACCACCCATTCGGAAT+CGG - Chr3:103819534-103819553 MsG0380018056.01.T01:intron 55.0%
ACCTGAAGAAGCTCCCTACG+AGG - Chr3:103821026-103821045 MsG0380018056.01.T01:intron 55.0%
CATAAAGTGACGAGGCCCGT+AGG - Chr3:103819396-103819415 MsG0380018056.01.T01:intron 55.0%
CCAATCACCCACCACCCATT+CGG - Chr3:103819528-103819547 MsG0380018056.01.T01:intron 55.0%
CCACCCATTCGGAATCGGAA+TGG - Chr3:103819539-103819558 MsG0380018056.01.T01:intron 55.0%
CCATTCCGATTCCGAATGGG+TGG + Chr3:103819542-103819561 None:intergenic 55.0%
CCTACATGGAGGCCAAAGTG+AGG + Chr3:103819960-103819979 None:intergenic 55.0%
CCTCACTTTGGCCTCCATGT+AGG - Chr3:103819957-103819976 MsG0380018056.01.T01:intron 55.0%
CCTTGAGTGCACCAAAGACC+CGG + Chr3:103820331-103820350 None:intergenic 55.0%
CGTGTGTTTGTCTTCCGAGC+AGG - Chr3:103820999-103821018 MsG0380018056.01.T01:intron 55.0%
CTTACATTCGGGTCGGACTC+TGG + Chr3:103819092-103819111 None:intergenic 55.0%
GCAGCTTCTGATGTGGCTTC+TGG - Chr3:103817872-103817891 MsG0380018056.01.T01:CDS 55.0%
GCCTGAGAAACAGCCACCAA+AGG - Chr3:103820817-103820836 MsG0380018056.01.T01:intron 55.0%
TAAGAACTCGGCGAGCCCAA+AGG + Chr3:103820101-103820120 None:intergenic 55.0%
TAAGACCACCACCGGAAACC+GGG - Chr3:103820310-103820329 MsG0380018056.01.T01:intron 55.0%
TACGACACTTTGCCAGCGTG+TGG + Chr3:103818256-103818275 None:intergenic 55.0%
TCCGATTCCGAATGGGTGGT+GGG + Chr3:103819538-103819557 None:intergenic 55.0%
TCCTCGTAGGGAGCTTCTTC+AGG + Chr3:103821030-103821049 None:intergenic 55.0%
TCTTGGGCTGCCTTTGCCTA+CGG + Chr3:103819415-103819434 None:intergenic 55.0%
TGCACCAAAGACCCGGTTTC+CGG + Chr3:103820324-103820343 None:intergenic 55.0%
TTCCGATTCCGAATGGGTGG+TGG + Chr3:103819539-103819558 None:intergenic 55.0%
! ACGGGCCTCGTCACTTTATG+TGG + Chr3:103819396-103819415 None:intergenic 55.0%
! TGCAGCCGGAGATGATGATG+AGG - Chr3:103821092-103821111 MsG0380018056.01.T01:CDS 55.0%
!! ATGGATGGAGTGGATTGGGG+GGG - Chr3:103819289-103819308 MsG0380018056.01.T01:intron 55.0%
!! TGGCTTCAGGGAGCTTTGGA+CGG - Chr3:103820426-103820445 MsG0380018056.01.T01:intron 55.0%
AAAGACCCGGTTTCCGGTGG+TGG + Chr3:103820318-103820337 None:intergenic 60.0%
AATGGCCTCCTGGAGTCAGC+TGG + Chr3:103820263-103820282 None:intergenic 60.0%
ACCAAAGACCCGGTTTCCGG+TGG + Chr3:103820321-103820340 None:intergenic 60.0%
ACCACCGGAAACCGGGTCTT+TGG - Chr3:103820317-103820336 MsG0380018056.01.T01:intron 60.0%
ACTCCCAGCTGGAGCGACAA+AGG - Chr3:103818203-103818222 MsG0380018056.01.T01:intron 60.0%
CTTGGGCTGCCTTTGCCTAC+GGG + Chr3:103819414-103819433 None:intergenic 60.0%
CTTTGCCAGCGTGTGGTCAG+CGG + Chr3:103818249-103818268 None:intergenic 60.0%
TGTGGTCAGCGGTTTCGCAG+TGG + Chr3:103818238-103818257 None:intergenic 60.0%
TTCTCTGCACCAGACAGCCG+CGG - Chr3:103819488-103819507 MsG0380018056.01.T01:intron 60.0%
TTGTCGCTCCAGCTGGGAGT+AGG + Chr3:103818203-103818222 None:intergenic 60.0%
! CCGGGTCTTTGGTGCACTCA+AGG - Chr3:103820328-103820347 MsG0380018056.01.T01:intron 60.0%
! CTGTGGAACCAGCTGACTCC+AGG - Chr3:103820252-103820271 MsG0380018056.01.T01:intron 60.0%
! TGGAACCAGCTGACTCCAGG+AGG - Chr3:103820255-103820274 MsG0380018056.01.T01:intron 60.0%
!! CCGAATGGGTGGTGGGTGAT+TGG + Chr3:103819531-103819550 None:intergenic 60.0%
!! CTTCAGGGAGCTTTGGACGG+GGG - Chr3:103820429-103820448 MsG0380018056.01.T01:intron 60.0%
!! GCTTCAGGGAGCTTTGGACG+GGG - Chr3:103820428-103820447 MsG0380018056.01.T01:intron 60.0%
!! GGCTTCAGGGAGCTTTGGAC+GGG - Chr3:103820427-103820446 MsG0380018056.01.T01:intron 60.0%
!! TGGATGGAGTGGATTGGGGG+GGG - Chr3:103819290-103819309 MsG0380018056.01.T01:intron 60.0%
ACTGCCCGCACCTTCAACCG+CGG + Chr3:103819508-103819527 None:intergenic 65.0%
CACCAGACAGCCGCGGTTGA+AGG - Chr3:103819495-103819514 MsG0380018056.01.T01:intron 65.0%
CACCTTCAACCGCGGCTGTC+TGG + Chr3:103819500-103819519 None:intergenic 65.0%
CGAAACCGCTGACCACACGC+TGG - Chr3:103818241-103818260 MsG0380018056.01.T01:intron 65.0%
GACAGCCGCGGTTGAAGGTG+CGG - Chr3:103819500-103819519 MsG0380018056.01.T01:intron 65.0%
GTGACGAGGCCCGTAGGCAA+AGG - Chr3:103819402-103819421 MsG0380018056.01.T01:intron 65.0%
! ACAGCCGCGGTTGAAGGTGC+GGG - Chr3:103819501-103819520 MsG0380018056.01.T01:intron 65.0%
! GAGAGCACGGAATGGCCTCC+TGG + Chr3:103820273-103820292 None:intergenic 65.0%
!! ATGGAGTGGATTGGGGGGGG+GGG - Chr3:103819293-103819312 MsG0380018056.01.T01:intron 65.0%
!! GATGGAGTGGATTGGGGGGG+GGG - Chr3:103819292-103819311 MsG0380018056.01.T01:intron 65.0%
!! GGATGGAGTGGATTGGGGGG+GGG - Chr3:103819291-103819310 MsG0380018056.01.T01:intron 65.0%
!! GGGAGCTTTGGACGGGGGTC+TGG - Chr3:103820434-103820453 MsG0380018056.01.T01:intron 70.0%
!! TGGAGTGGATTGGGGGGGGG+GGG - Chr3:103819294-103819313 MsG0380018056.01.T01:intron 70.0%
!! AGTGGATTGGGGGGGGGGGG+GGG - Chr3:103819297-103819316 MsG0380018056.01.T01:intron 75.0%
!! GAGTGGATTGGGGGGGGGGG+GGG - Chr3:103819296-103819315 MsG0380018056.01.T01:intron 75.0%
!! GGAGTGGATTGGGGGGGGGG+GGG - Chr3:103819295-103819314 MsG0380018056.01.T01:intron 75.0%
!! TGGATTGGGGGGGGGGGGGG+GGG - Chr3:103819299-103819318 MsG0380018056.01.T01:intron 80.0%
!!! GTGGATTGGGGGGGGGGGGG+GGG - Chr3:103819298-103819317 MsG0380018056.01.T01:intron 80.0%
! ATTGGGGGGGGGGGGGGGGG+GGG - Chr3:103819302-103819321 MsG0380018056.01.T01:intron 85.0%
! GATTGGGGGGGGGGGGGGGG+GGG - Chr3:103819301-103819320 MsG0380018056.01.T01:intron 85.0%
! GGATTGGGGGGGGGGGGGGG+GGG - Chr3:103819300-103819319 MsG0380018056.01.T01:intron 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - Chr3:103819303-103819322 MsG0380018056.01.T01:intron 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - Chr3:103819304-103819323 MsG0380018056.01.T01:intron 95.0%
Chromosome Type Strat End Strand Name
Chr3 gene 103817803 103821128 103817803 ID=MsG0380018056.01;Name=MsG0380018056.01
Chr3 mRNA 103817803 103821128 103817803 ID=MsG0380018056.01.T01;Parent=MsG0380018056.01;Name=MsG0380018056.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0.42|0.37|0.87|1|1|8|0|259
Chr3 exon 103821048 103821128 103821048 ID=MsG0380018056.01.T01:exon:20406;Parent=MsG0380018056.01.T01
Chr3 exon 103819221 103819291 103819221 ID=MsG0380018056.01.T01:exon:20405;Parent=MsG0380018056.01.T01
Chr3 exon 103818932 103819059 103818932 ID=MsG0380018056.01.T01:exon:20404;Parent=MsG0380018056.01.T01
Chr3 exon 103818770 103818849 103818770 ID=MsG0380018056.01.T01:exon:20403;Parent=MsG0380018056.01.T01
Chr3 exon 103818582 103818698 103818582 ID=MsG0380018056.01.T01:exon:20402;Parent=MsG0380018056.01.T01
Chr3 exon 103818453 103818496 103818453 ID=MsG0380018056.01.T01:exon:20401;Parent=MsG0380018056.01.T01
Chr3 exon 103818082 103818207 103818082 ID=MsG0380018056.01.T01:exon:20400;Parent=MsG0380018056.01.T01
Chr3 exon 103817803 103817935 103817803 ID=MsG0380018056.01.T01:exon:20399;Parent=MsG0380018056.01.T01
Chr3 CDS 103821048 103821128 103821048 ID=MsG0380018056.01.T01:cds;Parent=MsG0380018056.01.T01
Chr3 CDS 103819221 103819291 103819221 ID=MsG0380018056.01.T01:cds;Parent=MsG0380018056.01.T01
Chr3 CDS 103818932 103819059 103818932 ID=MsG0380018056.01.T01:cds;Parent=MsG0380018056.01.T01
Chr3 CDS 103818770 103818849 103818770 ID=MsG0380018056.01.T01:cds;Parent=MsG0380018056.01.T01
Chr3 CDS 103818582 103818698 103818582 ID=MsG0380018056.01.T01:cds;Parent=MsG0380018056.01.T01
Chr3 CDS 103818453 103818496 103818453 ID=MsG0380018056.01.T01:cds;Parent=MsG0380018056.01.T01
Chr3 CDS 103818082 103818207 103818082 ID=MsG0380018056.01.T01:cds;Parent=MsG0380018056.01.T01
Chr3 CDS 103817803 103817935 103817803 ID=MsG0380018056.01.T01:cds;Parent=MsG0380018056.01.T01
Gene Sequence

>MsG0380018056.01.T01

ATGGCTTCTGATGAGGCAGCTTCTGATGATGCAGCTTCTGATGATATGACTTCTGCAGCTTCTGATGACGCAGCTTCTGATGCATTTGTGAAGGCTCAGAAATCAAATGCGTACTTCAAGCGATTTCAAGTGAAATTCAAGAGAAAGAGAGGACAAACAAAGACATTGTCTGTCAAAATTGTCTCTGCTACCATTGCTGGTGATATTGTTCTTGCTGCTGCTTACGCACATGAGCTTCCTCACTTTGGCCTCCATGTAGGCCTTACTAACTATGCTGCAGCTTATTGCACTGGTCTCCTTTGGGCTCGCCGAGTTCTTAAAACTCTTGAAATGGATGATCAGTATGAAGGCAATGTTGAGGCAACCGGAGAGGATTATTCTGTGGAACCAGCTGACTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACCACCGGAAACCGGGTCTTTGGTGCACTCAAGGGAGCTTTGGACGGGGGTCTGGATATTCCTCACAGCGACAAAAGTGAATATATCAAGCGTGGAATTGAAGCGGATGGAATCGAGGAACTATACAAAAAGGTTCATGCTGCCATTCGTGCAGATCCCTCAATCAAAAAGCCTGAGAAACAGCCACCAAAGGAACACAAGAGATGCGTGTGTTTGTCTTCCGAGCAGGTACAACCTGAAGAAGCTCCCTACGAGGAAAGAAAGACAAAGTTGGTCTCTCGCTTGCAAGCTCTCAATTCTGCAGCCGGAGATGATGATGAGGATGACGATGAGTGA
Protein sequence

>MsG0380018056.01.T01

MASDEAASDDAASDDMTSAASDDAASDAFVKAQKSNAYFKRFQVKFKRKRGQTKTLSVKIVSATIAGDIVLAAAYAHELPHFGLHVGLTNYAAAYCTGLLWARRVLKTLEMDDQYEGNVEATGEDYSVEPADSRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKSEYIKRGIEADGIEELYKKVHAAIRADPSIKKPEKQPPKEHKRCVCLSSEQVQPEEAPYEERKTKLVSRLQALNSAAGDDDEDDDE*