AlfalfaGEDB | MsG0480022096.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022096.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022096.01.T01	PNX80164.1	69.565	115	33	2	12	124	172	286	5.47E-44	155

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022096.01.T01	A0A2K3LNP9	69.565	115	33	2	12	124	172	286	2.61e-44	155

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280008073.01	MsG0480022096.01	0.809355	1.971424e-50	1.154988e-47
MsG0480022096.01	MsG0480022117.01	0.829700	4.446229e-55	4.585943e-52
MsG0480022096.01	MsG0680030656.01	0.804602	1.997012e-49	1.034007e-46
MsG0480022096.01	MsG0780038113.01	0.817933	2.550232e-52	1.882583e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022096.01.T01	MTR_4g082355	63.934	122	43	1	4	124	163	284	2.43e-47	154
MsG0480022096.01.T01	MTR_4g082360	69.841	126	36	2	1	124	155	280	6.80e-41	137
MsG0480022096.01.T01	MTR_4g082365	49.138	116	57	2	4	117	140	255	4.91e-29	106
MsG0480022096.01.T01	MTR_4g082550	37.795	127	58	5	2	108	185	310	2.69e-14	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022096.01.T01	AT3G11810	36.429	140	63	6	1	114	187	326	1.62e-15	71.6

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Find 30 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGGTGAAAGGAATGAAA+AGG	0.591857	4:+68154492	MsG0480022096.01.T01:CDS
AAGTTGAAGAAGTGGAATTT+GGG	0.381890	4:+68154684	MsG0480022096.01.T01:CDS
ACATGATGAAGTTGAAGAAG+TGG	0.477972	4:+68154676	MsG0480022096.01.T01:CDS
ACGTCCAAATAAACCACAAG+AGG	0.588543	4:-68154395	None:intergenic
AGAAGCTGGAAACTGGTGAA+AGG	0.623879	4:+68154482	MsG0480022096.01.T01:CDS
AGTCCCTCTTGTGGTTTATT+TGG	0.171116	4:+68154391	MsG0480022096.01.T01:CDS
AGTGAAAGCACCGCAAGTAT+AGG	0.515408	4:-68154605	None:intergenic
AGTGGAATTTGGGAAGGAAA+AGG	0.544513	4:+68154694	MsG0480022096.01.T01:CDS
AGTTTCCAGCTTCTCCTTAA+TGG	0.257266	4:-68154473	None:intergenic
ATCGATTAGTGGTTATAGTT+GGG	0.432064	4:+68154562	MsG0480022096.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGAAGAAGTGGAATTT+GGG	+	Chr4:68154684-68154703	MsG0480022096.01.T01:CDS	30.0%
ATCGATTAGTGGTTATAGTT+GGG	+	Chr4:68154562-68154581	MsG0480022096.01.T01:CDS	30.0%
AACTGGTGAAAGGAATGAAA+AGG	+	Chr4:68154492-68154511	MsG0480022096.01.T01:CDS	35.0%
ACATGATGAAGTTGAAGAAG+TGG	+	Chr4:68154676-68154695	MsG0480022096.01.T01:CDS	35.0%
GAAGTTGAAGAAGTGGAATT+TGG	+	Chr4:68154683-68154702	MsG0480022096.01.T01:CDS	35.0%
TTTGGACGTTTACATGATGT+TGG	+	Chr4:68154409-68154428	MsG0480022096.01.T01:CDS	35.0%
ACGTCCAAATAAACCACAAG+AGG	-	Chr4:68154398-68154417	None:intergenic	40.0%
AGTCCCTCTTGTGGTTTATT+TGG	+	Chr4:68154391-68154410	MsG0480022096.01.T01:CDS	40.0%
AGTGGAATTTGGGAAGGAAA+AGG	+	Chr4:68154694-68154713	MsG0480022096.01.T01:CDS	40.0%
AGTTTCCAGCTTCTCCTTAA+TGG	-	Chr4:68154476-68154495	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	68154371	68154745	68154371	ID=MsG0480022096.01;Name=MsG0480022096.01
Chr4	mRNA	68154371	68154745	68154371	ID=MsG0480022096.01.T01;Parent=MsG0480022096.01;Name=MsG0480022096.01.T01;_AED=0.33;_eAED=0.33;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|124
Chr4	exon	68154371	68154745	68154371	ID=MsG0480022096.01.T01:exon:8441;Parent=MsG0480022096.01.T01
Chr4	CDS	68154371	68154745	68154371	ID=MsG0480022096.01.T01:cds;Parent=MsG0480022096.01.T01

Gene Sequence

>MsG0480022096.01.T01

ATGGTTTCAATGATTCTTATAGTCCCTCTTGTGGTTTATTTGGACGTTTACATGATGTTGGTGAAAGTGATTGTAGTGGTGGAATCACGTTGGGGTTTGGAACCATTAAGGAGAAGCTGGAAACTGGTGAAAGGAATGAAAAGGTTGGCTTTTTCAACCTTGTTTTTGGTTGCGTTGCAAGGGATGTTGACATCGATTAGTGGTTATAGTTGGGTTATGATTTTCGTGGTTTCTCCTATACTTGCGGTGCTTTCACTTTACAGTATTGCAGTTTATACATTGTTGTACATATACTGCAAAGAGAAACATGATGAAGTTGAAGAAGTGGAATTTGGGAAGGAAAAGGACGAGGCTAAATTGTCCTTAATTCCATAA

Protein sequence

>MsG0480022096.01.T01

MVSMILIVPLVVYLDVYMMLVKVIVVVESRWGLEPLRRSWKLVKGMKRLAFSTLFLVALQGMLTSISGYSWVMIFVVSPILAVLSLYSIAVYTLLYIYCKEKHDEVEEVEFGKEKDEAKLSLIP*