AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022126.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022126.01.T01 MTR_4g085090 98.519 135 2 0 1 135 1293 1427 4.13e-85 274
MsG0480022126.01.T01 MTR_4g085090 95.122 41 2 0 150 190 1641 1681 1.09e-18 83.6
MsG0480022126.01.T01 MTR_8g023080 87.805 41 5 0 150 190 1699 1739 4.72e-17 79.0
MsG0480022126.01.T01 MTR_8g023080 87.805 41 5 0 150 190 1707 1747 4.77e-17 79.0
MsG0480022126.01.T01 MTR_1g097110 80.488 41 8 0 150 190 1489 1529 9.70e-16 75.1
MsG0480022126.01.T01 MTR_4g124590 82.927 41 7 0 150 190 1699 1739 1.66e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022126.01.T01 AT1G71010 45.455 132 66 3 1 129 1221 1349 2.90e-28 111
MsG0480022126.01.T01 AT1G71010 85.366 41 6 0 150 190 1563 1603 5.56e-17 79.0
MsG0480022126.01.T01 AT4G33240 80.488 41 8 0 150 190 1639 1679 1.00e-15 75.1
MsG0480022126.01.T01 AT4G33240 80.488 41 8 0 150 190 1640 1680 1.00e-15 75.1
MsG0480022126.01.T01 AT4G33240 80.488 41 8 0 150 190 1643 1683 1.01e-15 75.1
MsG0480022126.01.T01 AT4G33240 80.488 41 8 0 150 190 1643 1683 1.01e-15 75.1
MsG0480022126.01.T01 AT4G33240 80.488 41 8 0 150 190 1643 1683 1.01e-15 75.1
MsG0480022126.01.T01 AT4G33240 80.488 41 8 0 150 190 1603 1643 1.02e-15 75.1
MsG0480022126.01.T01 AT4G33240 80.488 41 8 0 150 190 1642 1682 1.02e-15 75.1
MsG0480022126.01.T01 AT1G34260 80.488 41 8 0 150 190 1129 1169 7.15e-15 72.8
MsG0480022126.01.T01 AT1G34260 80.488 41 8 0 150 190 1369 1409 7.71e-15 72.4
MsG0480022126.01.T01 AT1G34260 80.488 41 8 0 150 190 1369 1409 7.71e-15 72.4
MsG0480022126.01.T01 AT1G34260 80.488 41 8 0 150 190 1369 1409 7.71e-15 72.4
MsG0480022126.01.T01 AT3G14270 83.784 37 6 0 154 190 1686 1722 1.47e-14 71.6
MsG0480022126.01.T01 AT3G14270 83.784 37 6 0 154 190 1686 1722 1.47e-14 71.6

Find 79 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTACGAAGATTGTGTTTC+TGG 0.211412 4:-68575829 MsG0480022126.01.T01:CDS
GGTTAAAGCTTCTGGGTCTT+GGG 0.213430 4:-68574566 MsG0480022126.01.T01:exon
GGGTTAAAGCTTCTGGGTCT+TGG 0.220351 4:-68574567 MsG0480022126.01.T01:exon
AGACACTGGGTTAAAGCTTC+TGG 0.232897 4:-68574574 MsG0480022126.01.T01:exon
CTTTGTTTCCTTACCACCTT+TGG 0.239661 4:+68575168 None:intergenic
GACCTGGATTATATCAATTA+TGG 0.273941 4:-68575715 MsG0480022126.01.T01:CDS
TTTGCAATACATTGGATATT+GGG 0.278777 4:+68576049 None:intergenic
ATCTTATGCCCTTAGTTCTA+AGG 0.287362 4:-68575851 MsG0480022126.01.T01:CDS
TATATCAATTATGGTAGTTA+TGG 0.326616 4:-68575706 MsG0480022126.01.T01:CDS
TCTATTGTTGTGACATGTTT+GGG 0.326658 4:+68575912 None:intergenic
GTTTCAGTCAGTTGATGTTA+TGG 0.327832 4:-68574693 MsG0480022126.01.T01:intron
TTAACCATCATAAACAAATA+AGG 0.336208 4:+68574254 None:intergenic
CTCTATTGTTGTGACATGTT+TGG 0.367738 4:+68575911 None:intergenic
TTTGTTTCCTTACCACCTTT+GGG 0.369918 4:+68575169 None:intergenic
TGGATTACTCATTGCTGGTT+GGG 0.372886 4:-68574673 MsG0480022126.01.T01:CDS
AACAATACAAGAAAAGATTC+AGG 0.373860 4:-68574506 MsG0480022126.01.T01:three_prime_UTR
ATATCAATTATGGTAGTTAT+GGG 0.377331 4:-68575705 MsG0480022126.01.T01:CDS
TGTTATGGATTACTCATTGC+TGG 0.377913 4:-68574678 MsG0480022126.01.T01:CDS
ATGAGAAGAAGGAGCTGGTA+TGG 0.397716 4:-68574643 MsG0480022126.01.T01:CDS
CAGATTCACGCGATGGTAGC+TGG 0.407574 4:-68575801 MsG0480022126.01.T01:CDS
AATACCTTATTTGTTTATGA+TGG 0.407662 4:-68574258 MsG0480022126.01.T01:three_prime_UTR
ATCCATAGTGAAAACTCCTT+TGG 0.408031 4:-68574399 MsG0480022126.01.T01:three_prime_UTR
GGAAACAAAGATAGATTTGA+TGG 0.410258 4:-68575155 MsG0480022126.01.T01:intron
CTTCGTAGTCCTTAGAACTA+AGG 0.424278 4:+68575842 None:intergenic
TCCATAGTGAAAACTCCTTT+GGG 0.425652 4:-68574398 MsG0480022126.01.T01:three_prime_UTR
GGATTACTCATTGCTGGTTG+GGG 0.432617 4:-68574672 MsG0480022126.01.T01:CDS
GACACTGGGTTAAAGCTTCT+GGG 0.439047 4:-68574573 MsG0480022126.01.T01:exon
TCCATTTCTCACATTGCTGA+AGG 0.441092 4:-68575952 MsG0480022126.01.T01:CDS
CTCACATTGCTGAAGGTGCT+CGG 0.441591 4:-68575945 MsG0480022126.01.T01:CDS
ACCTTCAGCAATGTGAGAAA+TGG 0.464071 4:+68575951 None:intergenic
TTCTCACCTTACCTGATCAA+TGG 0.472578 4:-68574464 MsG0480022126.01.T01:three_prime_UTR
TGAGAAGAAGGAGCTGGTAT+GGG 0.473241 4:-68574642 MsG0480022126.01.T01:CDS
GTTAAAGCTTCTGGGTCTTG+GGG 0.477491 4:-68574565 MsG0480022126.01.T01:exon
ACTACGAAGATTGTGTTTCT+GGG 0.483686 4:-68575828 MsG0480022126.01.T01:CDS
AATCAAGATGACCATTGATC+AGG 0.484226 4:+68574453 None:intergenic
AGTAGCCCATGCAGACAGGC+TGG 0.485523 4:+68575741 None:intergenic
ATAAGAGAACTAATTGAAGA+TGG 0.487336 4:+68575670 None:intergenic
TTACTCATTGCTGGTTGGGG+TGG 0.488549 4:-68574669 MsG0480022126.01.T01:CDS
ATGGATTACTCATTGCTGGT+TGG 0.495940 4:-68574674 MsG0480022126.01.T01:CDS
TCAAATACCCAAAGGTGGTA+AGG 0.505474 4:-68575176 MsG0480022126.01.T01:CDS
GAGAAGAAGGAGCTGGTATG+GGG 0.512842 4:-68574641 MsG0480022126.01.T01:CDS
CTAATTCCAGCCTGTCTGCA+TGG 0.514489 4:-68575747 MsG0480022126.01.T01:CDS
TGGGGTGGATGATGAGAAGA+AGG 0.521261 4:-68574654 MsG0480022126.01.T01:CDS
TGCATGGGCTACTTTAGACC+TGG 0.521959 4:-68575731 MsG0480022126.01.T01:CDS
TGTTTAGGAGAGACAAGTGT+GGG 0.523610 4:+68574525 None:intergenic
TTCGTAGTCCTTAGAACTAA+GGG 0.529019 4:+68575843 None:intergenic
TACCATAATTGATATAATCC+AGG 0.535090 4:+68575713 None:intergenic
AGATGACCATTGATCAGGTA+AGG 0.535501 4:+68574458 None:intergenic
GGACAAGCATTTAGAGACAC+TGG 0.547675 4:-68574588 MsG0480022126.01.T01:CDS
CTAAAGTAGCCCATGCAGAC+AGG 0.548535 4:+68575737 None:intergenic
ATCAGGTAAGGTGAGAAAGT+AGG 0.552660 4:+68574470 None:intergenic
ATTACTTTCAAATGTTGCCG+TGG 0.559687 4:-68576026 MsG0480022126.01.T01:CDS
TAATTCCAGCCTGTCTGCAT+GGG 0.560004 4:-68575746 MsG0480022126.01.T01:CDS
GGATGATGAGAAGAAGGAGC+TGG 0.562953 4:-68574648 MsG0480022126.01.T01:CDS
TTCAGCAATGTGAGAAATGG+AGG 0.568070 4:+68575954 None:intergenic
ATTACATGAGACAATATACA+TGG 0.570097 4:-68574610 MsG0480022126.01.T01:CDS
GGTGAGAAAGTAGGTAGTCA+TGG 0.571637 4:+68574479 None:intergenic
ACCACTGTGCCACACTATGT+TGG 0.577677 4:+68574298 None:intergenic
AGAAGAAGGAGCTGGTATGG+GGG 0.579085 4:-68574640 MsG0480022126.01.T01:CDS
TACATTTGTTGATGTCCCAA+AGG 0.580621 4:+68574383 None:intergenic
TTTATCCTCTGCGACTCCCA+CGG 0.580986 4:+68576009 None:intergenic
TTACTTTCAAATGTTGCCGT+GGG 0.584850 4:-68576025 MsG0480022126.01.T01:CDS
AAGGGCATAAGATATTATGC+TGG 0.599880 4:+68575861 None:intergenic
AATTGAAGATGGAACTTCGT+CGG 0.617027 4:+68575681 None:intergenic
GGGAAGTCAGATTCACGCGA+TGG 0.621280 4:-68575808 MsG0480022126.01.T01:CDS
GACAAGCATTTAGAGACACT+GGG 0.627140 4:-68574587 MsG0480022126.01.T01:CDS
ATACAAGAAAAGATTCAGGA+AGG 0.645689 4:-68574502 MsG0480022126.01.T01:three_prime_UTR
TAATAATTACCAACATAGTG+TGG 0.651546 4:-68574307 MsG0480022126.01.T01:three_prime_UTR
TGTTGCCGTGGGAGTCGCAG+AGG 0.653409 4:-68576014 MsG0480022126.01.T01:CDS
TTGTTTAGGAGAGACAAGTG+TGG 0.660563 4:+68574524 None:intergenic
TTTAGGAGAGACAAGTGTGG+GGG 0.669027 4:+68574527 None:intergenic
CACTGTCAAATACCCAAAGG+TGG 0.681199 4:-68575181 MsG0480022126.01.T01:CDS
GAAATGGAGGAAATGAATGA+CGG 0.684688 4:+68575967 None:intergenic
CTATTGTTGTGACATGTTTG+GGG 0.689237 4:+68575913 None:intergenic
TTACATGAGACAATATACAT+GGG 0.710599 4:-68574609 MsG0480022126.01.T01:CDS
GTTTAGGAGAGACAAGTGTG+GGG 0.714242 4:+68574526 None:intergenic
GGTCACTGTCAAATACCCAA+AGG 0.716659 4:-68575184 MsG0480022126.01.T01:CDS
ACCAACATAGTGTGGCACAG+TGG 0.730058 4:-68574299 MsG0480022126.01.T01:three_prime_UTR
GGAGGAAATGAATGACGGTG+TGG 0.735694 4:+68575972 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAACATTAACCATTTATT+AGG + Chr4:68575404-68575423 None:intergenic 15.0%
!!! GTATTTTATTGTTTTAATAC+AGG - Chr4:68575112-68575131 MsG0480022126.01.T01:intron 15.0%
!! ATATCAATTATGGTAGTTAT+GGG - Chr4:68574612-68574631 MsG0480022126.01.T01:CDS 20.0%
!! TATATCAATTATGGTAGTTA+TGG - Chr4:68574611-68574630 MsG0480022126.01.T01:CDS 20.0%
!!! AAAGTAATTTTGCAATACAT+TGG + Chr4:68574279-68574298 None:intergenic 20.0%
!!! AATACCTTATTTGTTTATGA+TGG - Chr4:68576059-68576078 MsG0480022126.01.T01:CDS 20.0%
!!! AATAGTGACTATTTTGTATA+AGG - Chr4:68575565-68575584 MsG0480022126.01.T01:intron 20.0%
!!! AATCTTTTCTTGTATTGTTT+AGG + Chr4:68575810-68575829 None:intergenic 20.0%
! AACAATACAAGAAAAGATTC+AGG - Chr4:68575811-68575830 MsG0480022126.01.T01:CDS 25.0%
! AGAACAAAACCTATATTTCT+TGG - Chr4:68575316-68575335 MsG0480022126.01.T01:intron 25.0%
! ATAAGAGAACTAATTGAAGA+TGG + Chr4:68574650-68574669 None:intergenic 25.0%
! ATTACATGAGACAATATACA+TGG - Chr4:68575707-68575726 MsG0480022126.01.T01:CDS 25.0%
! CAAAATACTTGGTATTTATC+AGG - Chr4:68575012-68575031 MsG0480022126.01.T01:intron 25.0%
! GTTTCTTAGCAATACATAAT+AGG - Chr4:68575449-68575468 MsG0480022126.01.T01:intron 25.0%
! TAATAATTACCAACATAGTG+TGG - Chr4:68576010-68576029 MsG0480022126.01.T01:CDS 25.0%
! TACCATAATTGATATAATCC+AGG + Chr4:68574607-68574626 None:intergenic 25.0%
! TCAGTATTTCAAATACATGA+TGG - Chr4:68574956-68574975 MsG0480022126.01.T01:intron 25.0%
! TTACATGAGACAATATACAT+GGG - Chr4:68575708-68575727 MsG0480022126.01.T01:CDS 25.0%
! TTTACAAGAGAACATATCTA+GGG - Chr4:68575199-68575218 MsG0480022126.01.T01:intron 25.0%
! TTTGCAATACATTGGATATT+GGG + Chr4:68574271-68574290 None:intergenic 25.0%
!! AAAGATAGATTTGATGGTAA+TGG - Chr4:68575168-68575187 MsG0480022126.01.T01:CDS 25.0%
!! ATCATGTATTTGAAATACTG+AGG + Chr4:68574957-68574976 None:intergenic 25.0%
!! CTGATAAATACCAAGTATTT+TGG + Chr4:68575014-68575033 None:intergenic 25.0%
!! TTCAATTAGTTCTCTTATCA+GGG - Chr4:68574652-68574671 MsG0480022126.01.T01:CDS 25.0%
!! TTTTGCAATACATTGGATAT+TGG + Chr4:68574272-68574291 None:intergenic 25.0%
AACCTATATTTCTTGGAAGT+AGG - Chr4:68575323-68575342 MsG0480022126.01.T01:intron 30.0%
ACCTATATTTCTTGGAAGTA+GGG - Chr4:68575324-68575343 MsG0480022126.01.T01:intron 30.0%
ATACAAGAAAAGATTCAGGA+AGG - Chr4:68575815-68575834 MsG0480022126.01.T01:CDS 30.0%
CAAAACAGTTTGATTCACTT+AGG - Chr4:68574765-68574784 MsG0480022126.01.T01:intron 30.0%
GACCTGGATTATATCAATTA+TGG - Chr4:68574602-68574621 MsG0480022126.01.T01:CDS 30.0%
GGAAACAAAGATAGATTTGA+TGG - Chr4:68575162-68575181 MsG0480022126.01.T01:CDS 30.0%
GTTGGAGGAATGTAAAATTT+AGG - Chr4:68575076-68575095 MsG0480022126.01.T01:intron 30.0%
GTTTACAAGAGAACATATCT+AGG - Chr4:68575198-68575217 MsG0480022126.01.T01:intron 30.0%
TAAATCTTTCATCAACGACT+TGG + Chr4:68574884-68574903 None:intergenic 30.0%
TATCAAACAAGTAACGAAGA+CGG - Chr4:68574905-68574924 MsG0480022126.01.T01:intron 30.0%
TCTATTGTTGTGACATGTTT+GGG + Chr4:68574408-68574427 None:intergenic 30.0%
! ATCTAGGGTATATGATCTTA+AGG - Chr4:68575214-68575233 MsG0480022126.01.T01:intron 30.0%
! ATGCTATAGCTTTGCAATAT+CGG + Chr4:68575496-68575515 None:intergenic 30.0%
! CTTCAATTAGTTCTCTTATC+AGG - Chr4:68574651-68574670 MsG0480022126.01.T01:CDS 30.0%
! TCTAGGGTATATGATCTTAA+GGG - Chr4:68575215-68575234 MsG0480022126.01.T01:intron 30.0%
AATCAAGATGACCATTGATC+AGG + Chr4:68575867-68575886 None:intergenic 35.0%
AATTGAAGATGGAACTTCGT+CGG + Chr4:68574639-68574658 None:intergenic 35.0%
ACTACGAAGATTGTGTTTCT+GGG - Chr4:68574489-68574508 MsG0480022126.01.T01:three_prime_UTR 35.0%
AGGTAAATGCAGATACAACT+GGG - Chr4:68575251-68575270 MsG0480022126.01.T01:intron 35.0%
ATCCATAGTGAAAACTCCTT+TGG - Chr4:68575918-68575937 MsG0480022126.01.T01:CDS 35.0%
ATTACTTTCAAATGTTGCCG+TGG - Chr4:68574291-68574310 MsG0480022126.01.T01:three_prime_UTR 35.0%
ATTGCAAAGCTATAGCATAG+TGG - Chr4:68575498-68575517 MsG0480022126.01.T01:intron 35.0%
CTATTGTTGTGACATGTTTG+GGG + Chr4:68574407-68574426 None:intergenic 35.0%
CTCTATTGTTGTGACATGTT+TGG + Chr4:68574409-68574428 None:intergenic 35.0%
GAAATGGAGGAAATGAATGA+CGG + Chr4:68574353-68574372 None:intergenic 35.0%
TAGGTAAATGCAGATACAAC+TGG - Chr4:68575250-68575269 MsG0480022126.01.T01:intron 35.0%
TCCATAGTGAAAACTCCTTT+GGG - Chr4:68575919-68575938 MsG0480022126.01.T01:CDS 35.0%
TTAAGGGATCAGAAAGATCT+AGG - Chr4:68575231-68575250 MsG0480022126.01.T01:intron 35.0%
TTACTTTCAAATGTTGCCGT+GGG - Chr4:68574292-68574311 MsG0480022126.01.T01:three_prime_UTR 35.0%
TTCGTAGTCCTTAGAACTAA+GGG + Chr4:68574477-68574496 None:intergenic 35.0%
TTTGTTTCCTTACCACCTTT+GGG + Chr4:68575151-68575170 None:intergenic 35.0%
! AACTTGCTTGCCAAAATACT+TGG - Chr4:68575001-68575020 MsG0480022126.01.T01:intron 35.0%
! AAGGGCATAAGATATTATGC+TGG + Chr4:68574459-68574478 None:intergenic 35.0%
! GTTTCAGTCAGTTGATGTTA+TGG - Chr4:68575624-68575643 MsG0480022126.01.T01:intron 35.0%
! TACATTTGTTGATGTCCCAA+AGG + Chr4:68575937-68575956 None:intergenic 35.0%
! TGTTATGGATTACTCATTGC+TGG - Chr4:68575639-68575658 MsG0480022126.01.T01:intron 35.0%
! TTGGAATGACACATCCTTTT+TGG - Chr4:68575371-68575390 MsG0480022126.01.T01:intron 35.0%
!! ATCTTATGCCCTTAGTTCTA+AGG - Chr4:68574466-68574485 MsG0480022126.01.T01:three_prime_UTR 35.0%
!!! AAGTATTTTGGCAAGCAAGT+TGG + Chr4:68575002-68575021 None:intergenic 35.0%
!!! AGTATTTTGGCAAGCAAGTT+GGG + Chr4:68575001-68575020 None:intergenic 35.0%
ACAAGTAACGAAGACGGAAT+TGG - Chr4:68574911-68574930 MsG0480022126.01.T01:intron 40.0%
ACCTTCAGCAATGTGAGAAA+TGG + Chr4:68574369-68574388 None:intergenic 40.0%
AGATGACCATTGATCAGGTA+AGG + Chr4:68575862-68575881 None:intergenic 40.0%
ATCAGGTAAGGTGAGAAAGT+AGG + Chr4:68575850-68575869 None:intergenic 40.0%
CGCACAAATCAACTTCGTTA+GGG + Chr4:68574802-68574821 None:intergenic 40.0%
CTTCGTAGTCCTTAGAACTA+AGG + Chr4:68574478-68574497 None:intergenic 40.0%
GACAAGCATTTAGAGACACT+GGG - Chr4:68575730-68575749 MsG0480022126.01.T01:CDS 40.0%
GACTACGAAGATTGTGTTTC+TGG - Chr4:68574488-68574507 MsG0480022126.01.T01:three_prime_UTR 40.0%
GCCCTACTTCCAAGAAATAT+AGG + Chr4:68575328-68575347 None:intergenic 40.0%
TAGCACAAGCTTCAGATTGT+TGG - Chr4:68575058-68575077 MsG0480022126.01.T01:intron 40.0%
TATTAGGCTTACCGCCAAAA+AGG + Chr4:68575388-68575407 None:intergenic 40.0%
TCAAATACCCAAAGGTGGTA+AGG - Chr4:68575141-68575160 MsG0480022126.01.T01:intron 40.0%
TCCATTTCTCACATTGCTGA+AGG - Chr4:68574365-68574384 MsG0480022126.01.T01:three_prime_UTR 40.0%
TCGCACAAATCAACTTCGTT+AGG + Chr4:68574803-68574822 None:intergenic 40.0%
TCTTTCGGTGACGATTCTTT+GGG - Chr4:68574702-68574721 MsG0480022126.01.T01:intron 40.0%
TGTTTAGGAGAGACAAGTGT+GGG + Chr4:68575795-68575814 None:intergenic 40.0%
TTCAGCAATGTGAGAAATGG+AGG + Chr4:68574366-68574385 None:intergenic 40.0%
TTCTCACCTTACCTGATCAA+TGG - Chr4:68575853-68575872 MsG0480022126.01.T01:CDS 40.0%
TTGCACTTGCCAATCTCTTT+CGG - Chr4:68574687-68574706 MsG0480022126.01.T01:CDS 40.0%
TTGGCGGTAAGCCTAATAAA+TGG - Chr4:68575390-68575409 MsG0480022126.01.T01:intron 40.0%
TTGTTTAGGAGAGACAAGTG+TGG + Chr4:68575796-68575815 None:intergenic 40.0%
! ATGGATTACTCATTGCTGGT+TGG - Chr4:68575643-68575662 MsG0480022126.01.T01:intron 40.0%
! CTTTGTTTCCTTACCACCTT+TGG + Chr4:68575152-68575171 None:intergenic 40.0%
! GAATGACACATCCTTTTTGG+CGG - Chr4:68575374-68575393 MsG0480022126.01.T01:intron 40.0%
! TCCCAAAGGAGTTTTCACTA+TGG + Chr4:68575923-68575942 None:intergenic 40.0%
! TGGATTACTCATTGCTGGTT+GGG - Chr4:68575644-68575663 MsG0480022126.01.T01:intron 40.0%
AGACACTGGGTTAAAGCTTC+TGG - Chr4:68575743-68575762 MsG0480022126.01.T01:CDS 45.0%
ATGAGAAGAAGGAGCTGGTA+TGG - Chr4:68575674-68575693 MsG0480022126.01.T01:intron 45.0%
CACAAGCTTCAGATTGTTGG+AGG - Chr4:68575061-68575080 MsG0480022126.01.T01:intron 45.0%
CACTGTCAAATACCCAAAGG+TGG - Chr4:68575136-68575155 MsG0480022126.01.T01:intron 45.0%
CGAAAACTTGAGAGAGCTGT+TGG - Chr4:68575352-68575371 MsG0480022126.01.T01:intron 45.0%
CTCTTTCGGTGACGATTCTT+TGG - Chr4:68574701-68574720 MsG0480022126.01.T01:intron 45.0%
CTGAGGTGCGAATTCTTCAA+AGG + Chr4:68574940-68574959 None:intergenic 45.0%
CTTTCGGTGACGATTCTTTG+GGG - Chr4:68574703-68574722 MsG0480022126.01.T01:intron 45.0%
GAATCGTCACCGAAAGAGAT+TGG + Chr4:68574699-68574718 None:intergenic 45.0%
GACACTGGGTTAAAGCTTCT+GGG - Chr4:68575744-68575763 MsG0480022126.01.T01:CDS 45.0%
GGACAAGCATTTAGAGACAC+TGG - Chr4:68575729-68575748 MsG0480022126.01.T01:CDS 45.0%
GGTCACTGTCAAATACCCAA+AGG - Chr4:68575133-68575152 MsG0480022126.01.T01:intron 45.0%
GGTGAGAAAGTAGGTAGTCA+TGG + Chr4:68575841-68575860 None:intergenic 45.0%
GGTTAAAGCTTCTGGGTCTT+GGG - Chr4:68575751-68575770 MsG0480022126.01.T01:CDS 45.0%
GTTAAAGCTTCTGGGTCTTG+GGG - Chr4:68575752-68575771 MsG0480022126.01.T01:CDS 45.0%
GTTTAGGAGAGACAAGTGTG+GGG + Chr4:68575794-68575813 None:intergenic 45.0%
TAATTCCAGCCTGTCTGCAT+GGG - Chr4:68574571-68574590 MsG0480022126.01.T01:exon 45.0%
TGAGAAGAAGGAGCTGGTAT+GGG - Chr4:68575675-68575694 MsG0480022126.01.T01:intron 45.0%
TTTAGGAGAGACAAGTGTGG+GGG + Chr4:68575793-68575812 None:intergenic 45.0%
! GGATTACTCATTGCTGGTTG+GGG - Chr4:68575645-68575664 MsG0480022126.01.T01:intron 45.0%
ACCAACATAGTGTGGCACAG+TGG - Chr4:68576018-68576037 MsG0480022126.01.T01:CDS 50.0%
ACCACTGTGCCACACTATGT+TGG + Chr4:68576022-68576041 None:intergenic 50.0%
AGAAGAAGGAGCTGGTATGG+GGG - Chr4:68575677-68575696 MsG0480022126.01.T01:intron 50.0%
CTAAAGTAGCCCATGCAGAC+AGG + Chr4:68574583-68574602 None:intergenic 50.0%
CTAATTCCAGCCTGTCTGCA+TGG - Chr4:68574570-68574589 MsG0480022126.01.T01:exon 50.0%
GAGAAGAAGGAGCTGGTATG+GGG - Chr4:68575676-68575695 MsG0480022126.01.T01:intron 50.0%
GGAGGAAATGAATGACGGTG+TGG + Chr4:68574348-68574367 None:intergenic 50.0%
GGATGATGAGAAGAAGGAGC+TGG - Chr4:68575669-68575688 MsG0480022126.01.T01:intron 50.0%
GGGTTAAAGCTTCTGGGTCT+TGG - Chr4:68575750-68575769 MsG0480022126.01.T01:CDS 50.0%
TGGGGTGGATGATGAGAAGA+AGG - Chr4:68575663-68575682 MsG0480022126.01.T01:intron 50.0%
TTTATCCTCTGCGACTCCCA+CGG + Chr4:68574311-68574330 None:intergenic 50.0%
! GTGTGGGGGCAAGCATTTTT+AGG + Chr4:68575779-68575798 None:intergenic 50.0%
! TGCATGGGCTACTTTAGACC+TGG - Chr4:68574586-68574605 MsG0480022126.01.T01:CDS 50.0%
! TTACTCATTGCTGGTTGGGG+TGG - Chr4:68575648-68575667 MsG0480022126.01.T01:intron 50.0%
!! ATGATGGATGCGACGAACTC+GGG - Chr4:68574972-68574991 MsG0480022126.01.T01:intron 50.0%
!! CATGATGGATGCGACGAACT+CGG - Chr4:68574971-68574990 MsG0480022126.01.T01:intron 50.0%
!! CTCACATTGCTGAAGGTGCT+CGG - Chr4:68574372-68574391 MsG0480022126.01.T01:three_prime_UTR 50.0%
CAGATTCACGCGATGGTAGC+TGG - Chr4:68574516-68574535 MsG0480022126.01.T01:three_prime_UTR 55.0%
GGGAAGTCAGATTCACGCGA+TGG - Chr4:68574509-68574528 MsG0480022126.01.T01:three_prime_UTR 55.0%
TTTGTGCGATCCCTGAACCG+TGG - Chr4:68574814-68574833 MsG0480022126.01.T01:intron 55.0%
!! TGACGATTCTTTGGGGCTGG+AGG - Chr4:68574710-68574729 MsG0480022126.01.T01:intron 55.0%
AGTAGCCCATGCAGACAGGC+TGG + Chr4:68574579-68574598 None:intergenic 60.0%
ATGGATGCGACGAACTCGGG+AGG - Chr4:68574975-68574994 MsG0480022126.01.T01:intron 60.0%
!! CGGTGACGATTCTTTGGGGC+TGG - Chr4:68574707-68574726 MsG0480022126.01.T01:intron 60.0%
CCATCTCCGGCCACGGTTCA+GGG + Chr4:68574827-68574846 None:intergenic 65.0%
CGCCCTGTGCACTCCATCTC+CGG + Chr4:68574840-68574859 None:intergenic 65.0%
CGGAGATGGAGTGCACAGGG+CGG - Chr4:68574838-68574857 MsG0480022126.01.T01:intron 65.0%
GGAGATGGAGTGCACAGGGC+GGG - Chr4:68574839-68574858 MsG0480022126.01.T01:intron 65.0%
GGCCGGAGATGGAGTGCACA+GGG - Chr4:68574835-68574854 MsG0480022126.01.T01:intron 65.0%
GTGCACTCCATCTCCGGCCA+CGG + Chr4:68574834-68574853 None:intergenic 65.0%
TCCATCTCCGGCCACGGTTC+AGG + Chr4:68574828-68574847 None:intergenic 65.0%
TGCGATCCCTGAACCGTGGC+CGG - Chr4:68574818-68574837 MsG0480022126.01.T01:intron 65.0%
TGGCCGGAGATGGAGTGCAC+AGG - Chr4:68574834-68574853 MsG0480022126.01.T01:intron 65.0%
TGTTGCCGTGGGAGTCGCAG+AGG - Chr4:68574303-68574322 MsG0480022126.01.T01:three_prime_UTR 65.0%
CCCTGAACCGTGGCCGGAGA+TGG - Chr4:68574824-68574843 MsG0480022126.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 68574257 68576082 68574257 ID=MsG0480022126.01;Name=MsG0480022126.01
Chr4 mRNA 68574257 68576082 68574257 ID=MsG0480022126.01.T01;Parent=MsG0480022126.01;Name=MsG0480022126.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0.33|1|1|1|3|326|192
Chr4 exon 68574257 68574708 68574257 ID=MsG0480022126.01.T01:exon:968;Parent=MsG0480022126.01.T01
Chr4 exon 68575156 68575205 68575156 ID=MsG0480022126.01.T01:exon:967;Parent=MsG0480022126.01.T01
Chr4 exon 68575680 68576082 68575680 ID=MsG0480022126.01.T01:exon:966;Parent=MsG0480022126.01.T01
Chr4 CDS 68575680 68576082 68575680 ID=MsG0480022126.01.T01:cds;Parent=MsG0480022126.01.T01
Chr4 CDS 68575156 68575205 68575156 ID=MsG0480022126.01.T01:cds;Parent=MsG0480022126.01.T01
Chr4 CDS 68574583 68574708 68574583 ID=MsG0480022126.01.T01:cds;Parent=MsG0480022126.01.T01
Chr4 three_prime_UTR 68574257 68574582 68574257 ID=MsG0480022126.01.T01:three_prime_utr;Parent=MsG0480022126.01.T01
Gene Sequence

>MsG0480022126.01.T01

ATGGTTAGAGACCCAATATCCAATGTATTGCAAAATTACTTTCAAATGTTGCCGTGGGAGTCGCAGAGGATAAATCTGATTCTGAGCTCCACACCGTCATTCATTTCCTCCATTTCTCACATTGCTGAAGGTGCTCGGTTGTTGCTTCCCCAAACATGTCACAACAATAGAGTTATAGCTGTATATGACAATGATTACTCCAGCATAATATCTTATGCCCTTAGTTCTAAGGACTACGAAGATTGTGTTTCTGGGAAGTCAGATTCACGCGATGGTAGCTGGAATGCTCACGAGAGAAACAAAGAAGATTTAACTAATTCCAGCCTGTCTGCATGGGCTACTTTAGACCTGGATTATATCAATTATGGTAGTTATGGGTCCGACGAAGTTCCATCTTCAATTAGTCACTGTCAAATACCCAAAGGTGGTAAGGAAACAAAGATAGATTTGATGTCAGTTGATGTTATGGATTACTCATTGCTGGTTGGGGTGGATGATGAGAAGAAGGAGCTGGTATGGGGGATAATTGATTACATGAGACAATATACATGGGACAAGCATTTAGAGACACTGGGTTAA
Protein sequence

>MsG0480022126.01.T01

MVRDPISNVLQNYFQMLPWESQRINLILSSTPSFISSISHIAEGARLLLPQTCHNNRVIAVYDNDYSSIISYALSSKDYEDCVSGKSDSRDGSWNAHERNKEDLTNSSLSAWATLDLDYINYGSYGSDEVPSSISHCQIPKGGKETKIDLMSVDVMDYSLLVGVDDEKKELVWGIIDYMRQYTWDKHLETLG*