AlfalfaGEDB | MsG0480022129.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022129.01

KEGG: -
GO: -
PFAM: PF00226

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022129.01.T01	XP_013456857.3	93.548	155	10	0	1	155	1	155	3.44E-93	277

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022129.01.T01	Q5SLW9	43.478	115	56	2	13	122	4	114	4.56E-19	85.1

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022129.01.T01	A0A072UPG5	93.548	155	10	0	1	155	1	155	1.64e-93	277

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380014678.01	MsG0480022129.01	0.800489	1.407207e-48	6.560786e-46
MsG0380016661.01	MsG0480022129.01	0.809783	1.595061e-50	9.451770e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022129.01.T01	MTR_4g085070	93.548	155	10	0	1	155	1	155	4.16e-97	277
MsG0480022129.01.T01	MTR_7g112360	62.069	116	42	1	13	128	17	130	1.18e-47	152
MsG0480022129.01.T01	MTR_7g112360	69.231	78	24	0	13	90	17	94	2.40e-35	119
MsG0480022129.01.T01	MTR_8g022310	45.968	124	63	3	5	125	3	125	2.47e-34	119
MsG0480022129.01.T01	MTR_8g022310	45.968	124	63	3	5	125	3	125	4.35e-34	119
MsG0480022129.01.T01	MTR_8g022310	45.968	124	63	3	5	125	3	125	4.99e-34	119
MsG0480022129.01.T01	MTR_8g022310	45.968	124	63	3	5	125	3	125	5.78e-34	119
MsG0480022129.01.T01	MTR_3g108020	44.828	87	41	2	13	95	5	88	2.87e-17	77.4
MsG0480022129.01.T01	MTR_2g014470	48.571	70	33	1	9	78	1	67	1.07e-16	75.9
MsG0480022129.01.T01	MTR_2g014480	53.030	66	28	1	13	78	5	67	1.37e-16	75.5
MsG0480022129.01.T01	MTR_4g078850	50.000	66	30	1	13	78	5	67	1.94e-16	75.1
MsG0480022129.01.T01	MTR_4g015840	48.485	66	31	1	13	78	5	67	6.85e-16	73.6
MsG0480022129.01.T01	MTR_5g037880	40.404	99	54	2	10	103	3	101	2.13e-15	71.6
MsG0480022129.01.T01	MTR_4g109510	49.254	67	34	0	13	79	9	75	3.26e-15	72.0
MsG0480022129.01.T01	MTR_7g101070	52.941	68	29	1	13	80	359	423	4.93e-15	71.6
MsG0480022129.01.T01	MTR_2g090705	47.143	70	34	1	9	78	1	67	5.49e-15	70.9
MsG0480022129.01.T01	MTR_5g065160	50.746	67	29	1	12	78	82	144	7.56e-15	70.9
MsG0480022129.01.T01	MTR_5g065160	50.746	67	29	1	12	78	83	145	7.64e-15	70.9
MsG0480022129.01.T01	MTR_5g065160	50.746	67	29	1	12	78	76	138	9.51e-15	70.9
MsG0480022129.01.T01	MTR_5g065160	50.746	67	29	1	12	78	83	145	1.05e-14	70.5
MsG0480022129.01.T01	MTR_7g109340	53.731	67	27	2	12	78	26	88	1.72e-14	69.7
MsG0480022129.01.T01	MTR_1g029460	54.545	66	26	1	13	78	7	68	4.48e-14	68.6
MsG0480022129.01.T01	MTR_1g110310	44.286	70	35	1	14	83	18	83	1.38e-13	67.4
MsG0480022129.01.T01	MTR_1g029470	52.941	68	28	1	11	78	5	68	1.50e-13	67.0
MsG0480022129.01.T01	MTR_8g006430	43.038	79	33	2	4	78	2	72	2.30e-13	66.6
MsG0480022129.01.T01	MTR_5g012530	47.692	65	33	1	14	78	14	77	5.57e-13	65.9
MsG0480022129.01.T01	MTR_3g087030	49.315	73	28	3	13	81	83	150	8.53e-13	65.1
MsG0480022129.01.T01	MTR_6g027110	38.806	67	40	1	13	78	3	69	9.27e-13	62.4
MsG0480022129.01.T01	MTR_5g065860	48.529	68	31	1	13	80	49	112	1.24e-12	62.0
MsG0480022129.01.T01	MTR_4g023470	45.333	75	37	1	4	78	78	148	1.33e-12	64.7
MsG0480022129.01.T01	MTR_2g104030	50.725	69	29	2	10	78	68	131	1.58e-12	64.3
MsG0480022129.01.T01	MTR_3g027580	41.333	75	40	1	4	78	81	151	2.72e-12	63.5
MsG0480022129.01.T01	MTR_8g081620	43.284	67	36	1	12	78	60	124	4.04e-12	61.6
MsG0480022129.01.T01	MTR_1g052110	44.118	68	34	2	11	78	37	100	2.94e-11	60.1
MsG0480022129.01.T01	MTR_5g004570	47.826	69	32	1	11	79	5	69	3.49e-11	59.7
MsG0480022129.01.T01	MTR_5g035770	37.975	79	45	1	14	92	27	101	4.30e-11	60.1
MsG0480022129.01.T01	MTR_7g092380	44.776	67	33	2	12	78	22	84	6.31e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022129.01.T01	AT1G71000	59.231	130	51	1	6	135	2	129	2.04e-47	151
MsG0480022129.01.T01	AT1G71000	55.932	118	50	1	6	123	2	117	1.35e-41	137
MsG0480022129.01.T01	AT1G56300	57.500	120	49	1	9	128	10	127	2.18e-41	136
MsG0480022129.01.T01	AT1G56300	61.616	99	38	0	9	107	10	108	2.20e-38	127
MsG0480022129.01.T01	AT3G14200	43.089	123	66	3	9	128	9	130	8.89e-31	111
MsG0480022129.01.T01	AT1G72416	43.617	94	51	2	14	107	7	98	3.43e-22	88.2
MsG0480022129.01.T01	AT1G72416	43.617	94	51	2	14	107	7	98	4.93e-22	87.4
MsG0480022129.01.T01	AT1G72416	43.617	94	51	2	14	107	7	98	4.98e-22	87.4
MsG0480022129.01.T01	AT1G72416	43.617	94	51	2	14	107	7	98	4.99e-22	87.4
MsG0480022129.01.T01	AT5G25530	51.515	66	29	1	13	78	5	67	1.40e-17	78.2
MsG0480022129.01.T01	AT4G28480	47.143	70	34	1	9	78	1	67	3.47e-16	73.9
MsG0480022129.01.T01	AT3G08910	50.000	66	30	1	13	78	5	67	3.95e-16	73.9
MsG0480022129.01.T01	AT5G01390	50.000	66	30	1	13	78	5	67	4.40e-16	72.8
MsG0480022129.01.T01	AT1G59725	48.485	66	32	1	13	78	5	68	4.90e-16	73.9
MsG0480022129.01.T01	AT5G01390	50.000	66	30	1	13	78	5	67	5.89e-16	72.4
MsG0480022129.01.T01	AT4G28480	47.143	70	34	1	9	78	1	67	6.43e-16	73.6
MsG0480022129.01.T01	AT5G01390	50.000	66	30	1	13	78	5	67	7.14e-16	72.8
MsG0480022129.01.T01	AT1G10350	45.455	66	33	1	13	78	5	67	9.53e-16	73.2
MsG0480022129.01.T01	AT5G01390	50.000	66	30	1	13	78	5	67	1.25e-15	72.8
MsG0480022129.01.T01	AT1G74250	50.000	68	33	1	13	79	12	79	3.98e-15	72.0
MsG0480022129.01.T01	AT3G47940	47.143	70	35	1	9	78	1	68	4.32e-15	71.2
MsG0480022129.01.T01	AT5G25530	45.946	74	29	2	13	78	5	75	5.67e-15	71.2
MsG0480022129.01.T01	AT2G20560	48.485	66	31	1	13	78	5	67	7.71e-15	70.5
MsG0480022129.01.T01	AT5G16650	46.429	84	39	3	1	83	1	79	2.49e-14	65.9
MsG0480022129.01.T01	AT5G16650	46.429	84	39	3	1	83	1	79	4.68e-14	66.2
MsG0480022129.01.T01	AT5G03160	45.588	68	34	1	13	80	371	435	7.59e-14	68.2
MsG0480022129.01.T01	AT2G22360	43.617	94	44	3	13	102	87	175	8.93e-14	67.8
MsG0480022129.01.T01	AT4G13830	42.857	70	38	1	12	81	66	133	2.77e-13	63.9
MsG0480022129.01.T01	AT5G06910	33.129	163	83	7	7	147	23	181	5.37e-13	65.1
MsG0480022129.01.T01	AT4G13830	42.857	70	38	1	12	81	66	133	7.31e-13	63.5
MsG0480022129.01.T01	AT4G13830	42.857	70	38	1	12	81	66	133	1.01e-12	63.2
MsG0480022129.01.T01	AT3G62600	46.377	69	33	1	10	78	24	88	1.05e-12	64.7
MsG0480022129.01.T01	AT2G33735	45.455	66	32	1	13	78	23	84	1.23e-12	61.2
MsG0480022129.01.T01	AT2G33735	45.455	66	32	1	13	78	23	84	1.23e-12	61.2
MsG0480022129.01.T01	AT4G39150	50.000	68	30	1	11	78	5	68	1.61e-12	64.3
MsG0480022129.01.T01	AT4G39150	50.000	68	30	1	11	78	5	68	1.61e-12	64.3
MsG0480022129.01.T01	AT4G39150	50.000	68	30	1	11	78	5	68	1.61e-12	64.3
MsG0480022129.01.T01	AT2G41000	37.681	69	42	1	13	80	4	72	3.84e-12	61.6
MsG0480022129.01.T01	AT4G09350	47.887	71	32	2	12	81	106	172	4.58e-12	62.4
MsG0480022129.01.T01	AT1G80030	47.826	69	31	2	10	78	73	136	5.26e-12	62.8
MsG0480022129.01.T01	AT1G80030	47.826	69	31	2	10	78	73	136	6.36e-12	62.8
MsG0480022129.01.T01	AT1G80030	47.826	69	31	2	10	78	73	136	6.36e-12	62.8
MsG0480022129.01.T01	AT1G80030	47.826	69	31	2	10	78	73	136	6.36e-12	62.8
MsG0480022129.01.T01	AT2G41000	37.681	69	42	1	13	80	4	72	6.53e-12	61.2
MsG0480022129.01.T01	AT2G35720	43.056	72	40	1	7	78	10	80	6.72e-12	62.8
MsG0480022129.01.T01	AT1G28210	38.554	83	47	1	12	94	48	126	6.91e-12	62.4
MsG0480022129.01.T01	AT1G28210	38.554	83	47	1	12	94	48	126	7.04e-12	62.4
MsG0480022129.01.T01	AT1G68370	44.615	65	32	1	14	78	19	79	8.31e-12	62.4
MsG0480022129.01.T01	AT1G28210	38.554	83	47	1	12	94	48	126	8.94e-12	62.0
MsG0480022129.01.T01	AT1G24120	36.709	79	46	1	14	92	22	96	1.21e-11	62.0
MsG0480022129.01.T01	AT3G12170	32.026	153	77	6	12	146	11	154	1.38e-11	60.8
MsG0480022129.01.T01	AT3G12170	31.081	148	85	5	12	146	47	190	2.84e-11	60.5
MsG0480022129.01.T01	AT4G39960	45.455	66	31	1	13	78	86	146	3.11e-11	60.5
MsG0480022129.01.T01	AT4G39960	45.455	66	31	1	13	78	86	146	3.11e-11	60.5
MsG0480022129.01.T01	AT5G48030	45.455	66	32	1	13	78	95	156	3.16e-11	60.5
MsG0480022129.01.T01	AT4G10130	42.105	76	43	1	6	81	5	79	4.47e-11	58.5
MsG0480022129.01.T01	AT4G10130	42.105	76	43	1	6	81	5	79	4.47e-11	58.5
MsG0480022129.01.T01	AT4G10130	42.105	76	43	1	6	81	5	79	4.47e-11	58.5
MsG0480022129.01.T01	AT4G10130	42.105	76	43	1	6	81	5	79	4.47e-11	58.5
MsG0480022129.01.T01	AT4G10130	42.105	76	43	1	6	81	5	79	4.47e-11	58.5
MsG0480022129.01.T01	AT1G59980	37.975	79	45	1	14	92	25	99	4.70e-11	60.1
MsG0480022129.01.T01	AT1G59980	37.975	79	45	1	14	92	25	99	6.19e-11	59.7
MsG0480022129.01.T01	AT2G21510	45.588	68	33	1	11	78	5	68	6.91e-11	59.7
MsG0480022129.01.T01	AT2G21510	45.588	68	33	1	11	78	5	68	6.91e-11	59.7
MsG0480022129.01.T01	AT2G21510	45.588	68	33	1	11	78	5	68	7.26e-11	59.3
MsG0480022129.01.T01	AT2G21510	45.588	68	33	1	11	78	5	68	7.57e-11	59.3
MsG0480022129.01.T01	AT2G21510	45.588	68	33	1	11	78	5	68	7.57e-11	59.3

Find 57 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTAAGAAAATTCCCCTTAA+TGG	0.127385	4:+68611345	MsG0480022129.01.T01:three_prime_UTR
TAATAATTTCACATCCATTA+AGG	0.185046	4:-68611359	None:intergenic
ATGGATGTGAAATTATTATA+TGG	0.230513	4:+68611364	MsG0480022129.01.T01:three_prime_UTR
TTATTGCAGGAGAAGGTTTA+TGG	0.240463	4:+68611115	MsG0480022129.01.T01:intron
TTTCAACTTCATTGTAATAA+TGG	0.246266	4:+68611302	MsG0480022129.01.T01:three_prime_UTR
GGAGAAGGTTTATGGTTTAG+AGG	0.283100	4:+68611123	MsG0480022129.01.T01:intron
ACCAAACTCAACAACTAAAA+AGG	0.283729	4:-68609423	None:intergenic
AACATTCAAGAAGCTTATTC+AGG	0.294312	4:+68609764	MsG0480022129.01.T01:CDS
TCATCTTACTACAGTATTCT+TGG	0.298603	4:+68609515	MsG0480022129.01.T01:CDS
ATGAGATAAGGCGTGCTTAT+AGG	0.318628	4:+68609561	MsG0480022129.01.T01:CDS
AATAATTTCACATCCATTAA+GGG	0.367926	4:-68611358	None:intergenic
GGTGTTCTTGTCCACCTGTC+TGG	0.374242	4:-68609707	None:intergenic
TGGATGTGAAATTATTATAT+GGG	0.394327	4:+68611365	MsG0480022129.01.T01:three_prime_UTR
TTATGGTTTAGAGGAGTTGC+AGG	0.401445	4:+68611132	MsG0480022129.01.T01:CDS
GACACGATAATTGATAATAT+AGG	0.405639	4:+68611255	MsG0480022129.01.T01:exon
GGTGCTTCACTAATTCTGAT+AGG	0.412371	4:+68611445	MsG0480022129.01.T01:three_prime_UTR
CTCGCCTAACTTCAGCCATA+AGG	0.416208	4:-68610095	None:intergenic
CACCAACAACATAAAAGAAA+TGG	0.428419	4:-68611426	None:intergenic
CTGTAGTAAGATGACGATAA+TGG	0.435521	4:-68609506	None:intergenic
AAGGATTCATCAACCATAGA+TGG	0.439113	4:-68611211	None:intergenic
GGACGAAATGGTGTCCCTTA+TGG	0.441713	4:+68610080	MsG0480022129.01.T01:CDS
TATTACAATGAAGTTGAAAC+CGG	0.444377	4:-68611298	None:intergenic
GGGAAGCATAGGATAGGAAT+AGG	0.454324	4:+68611386	MsG0480022129.01.T01:three_prime_UTR
GGAGTTGCAGGACATGTTCA+TGG	0.460111	4:+68611144	MsG0480022129.01.T01:CDS
AGAGTCCTTCAATGTATTGT+GGG	0.465130	4:+68611185	MsG0480022129.01.T01:CDS
ATTCTTCATTAGATGAGATA+AGG	0.473305	4:+68609549	MsG0480022129.01.T01:CDS
TCGCCTAACTTCAGCCATAA+GGG	0.480132	4:-68610094	None:intergenic
ACCTCATCTTCTTCCTCTTG+AGG	0.492857	4:-68609934	None:intergenic
TGCTTATAGGAAGCTTGCTA+TGG	0.497498	4:+68609574	MsG0480022129.01.T01:CDS
GAGAGTCCTTCAATGTATTG+TGG	0.499022	4:+68611184	MsG0480022129.01.T01:CDS
TGTCCCTTATGGCTGAAGTT+AGG	0.499106	4:+68610091	MsG0480022129.01.T01:CDS
AAAAGAACTATGTACGATGC+TGG	0.511823	4:+68609901	MsG0480022129.01.T01:CDS
GTATTGTGGGACACCATCTA+TGG	0.513118	4:+68611198	MsG0480022129.01.T01:CDS
TGCAGCAATGGCATCCAGAC+AGG	0.513837	4:+68609693	MsG0480022129.01.T01:intron
AATGTTCTGAAATTTACGCT+TGG	0.532819	4:-68609747	None:intergenic
ATTATTATATGGGGAAGCAT+AGG	0.538167	4:+68611375	MsG0480022129.01.T01:three_prime_UTR
ACAATGGATGATTATAGTGA+AGG	0.543818	4:+68609482	MsG0480022129.01.T01:exon
AACACTTCCTCTCTTAGCAA+AGG	0.546362	4:-68611230	None:intergenic
CGATAATTGATAATATAGGC+CGG	0.549127	4:+68611259	MsG0480022129.01.T01:exon
ATAATTTCACATCCATTAAG+GGG	0.563023	4:-68611357	None:intergenic
CATAAAAGAAATGGTAGGAG+AGG	0.566562	4:-68611417	None:intergenic
CAATGGATGATTATAGTGAA+GGG	0.570763	4:+68609483	MsG0480022129.01.T01:exon
TTGGCTTCACTCAATAAAGA+AGG	0.580558	4:-68609728	None:intergenic
GGTGTCCCACAATACATTGA+AGG	0.581503	4:-68611190	None:intergenic
GATAATTGATAATATAGGCC+GGG	0.584641	4:+68611260	MsG0480022129.01.T01:exon
GCAGGACATGTTCATGGAGA+TGG	0.589641	4:+68611150	MsG0480022129.01.T01:CDS
ATGTTCATGGAGATGGCTGA+AGG	0.590061	4:+68611157	MsG0480022129.01.T01:CDS
GGATGTGAAATTATTATATG+GGG	0.602905	4:+68611366	MsG0480022129.01.T01:three_prime_UTR
TATATGGGGAAGCATAGGAT+AGG	0.605355	4:+68611380	MsG0480022129.01.T01:three_prime_UTR
TCCTCAAGAGGAAGAAGATG+AGG	0.607948	4:+68609933	MsG0480022129.01.T01:CDS
GATGAATCCTTTGCTAAGAG+AGG	0.608489	4:+68611223	MsG0480022129.01.T01:CDS
ATGGTTTAAACGAGTTACAA+TGG	0.625435	4:+68609466	MsG0480022129.01.T01:exon
AAGCTGATAGTGTATTTCAG+TGG	0.629125	4:+68611559	MsG0480022129.01.T01:three_prime_UTR
TGGCTTGTATGATCCTCAAG+AGG	0.660837	4:+68609921	MsG0480022129.01.T01:CDS
TATGGCTGAAGTTAGGCGAG+AGG	0.677695	4:+68610098	MsG0480022129.01.T01:CDS
AACAACATAAAAGAAATGGT+AGG	0.678149	4:-68611422	None:intergenic
AGCAATGGCATCCAGACAGG+TGG	0.685778	4:+68609696	MsG0480022129.01.T01:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CAATAAGATATATACATATA+TGG	-	Chr4:68611101-68611120	None:intergenic	15.0%
!!!	GATAGATATTTTTTATTGAA+GGG	+	Chr4:68610907-68610926	MsG0480022129.01.T01:intron	15.0%
!!!	TCTATGAATTTTTAACATAA+AGG	+	Chr4:68611029-68611048	MsG0480022129.01.T01:intron	15.0%
!!!	TGATAGATATTTTTTATTGA+AGG	+	Chr4:68610906-68610925	MsG0480022129.01.T01:intron	15.0%
!!!	TTTTGTTTATTAGTTTGTTA+TGG	+	Chr4:68610009-68610028	MsG0480022129.01.T01:intron	15.0%
!!	AAGTGTTCATTTAAATTGTA+CGG	+	Chr4:68610375-68610394	MsG0480022129.01.T01:intron	20.0%
!!	AATAATTTCACATCCATTAA+GGG	-	Chr4:68611361-68611380	None:intergenic	20.0%
!!	AATGAATGTTGAAAATTTGA+AGG	+	Chr4:68610341-68610360	MsG0480022129.01.T01:intron	20.0%
!!	ATATGTATATATCTTATTGC+AGG	+	Chr4:68611102-68611121	MsG0480022129.01.T01:intron	20.0%
!!	ATGGATGTGAAATTATTATA+TGG	+	Chr4:68611364-68611383	MsG0480022129.01.T01:three_prime_UTR	20.0%
!!	CATTTATCTTGTAAATGTAA+AGG	-	Chr4:68610826-68610845	None:intergenic	20.0%
!!	CTTTACATTTACAAGATAAA+TGG	+	Chr4:68610824-68610843	MsG0480022129.01.T01:intron	20.0%
!!	TAATAATTTCACATCCATTA+AGG	-	Chr4:68611362-68611381	None:intergenic	20.0%
!!	TGGATGTGAAATTATTATAT+GGG	+	Chr4:68611365-68611384	MsG0480022129.01.T01:three_prime_UTR	20.0%
!!	TTTCAACTTCATTGTAATAA+TGG	+	Chr4:68611302-68611321	MsG0480022129.01.T01:three_prime_UTR	20.0%
!!!	AATTTTTGTATCATTTTGGT+GGG	+	Chr4:68609811-68609830	MsG0480022129.01.T01:intron	20.0%
!!!	ACATGTTTGTTTCTAATTTT+AGG	+	Chr4:68610041-68610060	MsG0480022129.01.T01:intron	20.0%
!!!	GTTTTTTGTTTTGTTTTGTT+TGG	+	Chr4:68609856-68609875	MsG0480022129.01.T01:intron	20.0%
!!!	TGTGAATTTTTGTATCATTT+TGG	+	Chr4:68609807-68609826	MsG0480022129.01.T01:intron	20.0%
!	AAAGATAGAGATAAAACACA+TGG	+	Chr4:68610315-68610334	MsG0480022129.01.T01:intron	25.0%
!	AACAACATAAAAGAAATGGT+AGG	-	Chr4:68611425-68611444	None:intergenic	25.0%
!	ACAATCTTCAAGAAAAACTA+AGG	-	Chr4:68609984-68610003	None:intergenic	25.0%
!	ACAATGCAAATGACAAAAAA+AGG	-	Chr4:68609617-68609636	None:intergenic	25.0%
!	ATAATTTCACATCCATTAAG+GGG	-	Chr4:68611360-68611379	None:intergenic	25.0%
!	ATTCTTCATTAGATGAGATA+AGG	+	Chr4:68609549-68609568	MsG0480022129.01.T01:CDS	25.0%
!	CAATGCAAATGACAAAAAAA+GGG	-	Chr4:68609616-68609635	None:intergenic	25.0%
!	CTAACTCAATCTTACAAAAA+CGG	+	Chr4:68610715-68610734	MsG0480022129.01.T01:intron	25.0%
!	CTATTAGAAAAGTTTGATCT+TGG	+	Chr4:68610143-68610162	MsG0480022129.01.T01:intron	25.0%
!	GGATGTGAAATTATTATATG+GGG	+	Chr4:68611366-68611385	MsG0480022129.01.T01:three_prime_UTR	25.0%
!	TAATGAGATTTCATGACTAT+GGG	+	Chr4:68610189-68610208	MsG0480022129.01.T01:intron	25.0%
!	TATTACAATGAAGTTGAAAC+CGG	-	Chr4:68611301-68611320	None:intergenic	25.0%
!	TTAATGAGATTTCATGACTA+TGG	+	Chr4:68610188-68610207	MsG0480022129.01.T01:intron	25.0%
!!	AAATGAGACAAGTATGTTTT+TGG	-	Chr4:68609382-68609401	None:intergenic	25.0%
!!	AATTCAAAATTTTGCACCTT+AGG	-	Chr4:68610224-68610243	None:intergenic	25.0%
!!	CAAGATCAAACTTTTCTAAT+AGG	-	Chr4:68610145-68610164	None:intergenic	25.0%
!!	GAAAAGATTAGTAACAGTTT+TGG	+	Chr4:68610412-68610431	MsG0480022129.01.T01:intron	25.0%
!!	GAATTTTTGTATCATTTTGG+TGG	+	Chr4:68609810-68609829	MsG0480022129.01.T01:intron	25.0%
!!	GACACGATAATTGATAATAT+AGG	+	Chr4:68611255-68611274	MsG0480022129.01.T01:exon	25.0%
!!	TAATTGAGCATTGTTCAATT+TGG	+	Chr4:68611517-68611536	MsG0480022129.01.T01:intron	25.0%
!!	TACCATTTCTTTTATGTTGT+TGG	+	Chr4:68611424-68611443	MsG0480022129.01.T01:three_prime_UTR	25.0%
!!	TTAGGATTTTTCTGATTTTG+TGG	+	Chr4:68610059-68610078	MsG0480022129.01.T01:intron	25.0%
!!!	ACTCTCTTTTTAATTTGGTT+TGG	-	Chr4:68610267-68610286	None:intergenic	25.0%
!!!	CATATTTTATTTCTAGTGCA+TGG	+	Chr4:68609447-68609466	MsG0480022129.01.T01:five_prime_UTR	25.0%
!!!	CATGGGTCTTTTTTTTTTTT+TGG	-	Chr4:68610972-68610991	None:intergenic	25.0%
!!!	CTCTCTTTTTAATTTGGTTT+GGG	-	Chr4:68610266-68610285	None:intergenic	25.0%
!!!	GATTCACTCTCTTTTTAATT+TGG	-	Chr4:68610272-68610291	None:intergenic	25.0%
!!!	GTTCAATTTGGTTTTTGATT+TGG	+	Chr4:68611529-68611548	MsG0480022129.01.T01:intron	25.0%
	AACATTCAAGAAGCTTATTC+AGG	+	Chr4:68609764-68609783	MsG0480022129.01.T01:CDS	30.0%
	ACAATGGATGATTATAGTGA+AGG	+	Chr4:68609482-68609501	MsG0480022129.01.T01:exon	30.0%
	ACCAAACTCAACAACTAAAA+AGG	-	Chr4:68609426-68609445	None:intergenic	30.0%
	ATATATCTTATTGCAGGAGA+AGG	+	Chr4:68611108-68611127	MsG0480022129.01.T01:intron	30.0%
	ATGGTTAATCTTAGAAATCG+TGG	+	Chr4:68610452-68610471	MsG0480022129.01.T01:intron	30.0%
	ATGGTTTAAACGAGTTACAA+TGG	+	Chr4:68609466-68609485	MsG0480022129.01.T01:exon	30.0%
	ATGTCACAAAGACATTCTTA+GGG	+	Chr4:68610989-68611008	MsG0480022129.01.T01:intron	30.0%
	CAACAACTAAAAAGGAATCA+AGG	-	Chr4:68609418-68609437	None:intergenic	30.0%
	CAATGGATGATTATAGTGAA+GGG	+	Chr4:68609483-68609502	MsG0480022129.01.T01:exon	30.0%
	CACCAACAACATAAAAGAAA+TGG	-	Chr4:68611429-68611448	None:intergenic	30.0%
	GTTCATTTAAATTGTACGGA+AGG	+	Chr4:68610379-68610398	MsG0480022129.01.T01:intron	30.0%
	TAAGAATGTCTTTGTGACAT+GGG	-	Chr4:68610989-68611008	None:intergenic	30.0%
	TCATCTTACTACAGTATTCT+TGG	+	Chr4:68609515-68609534	MsG0480022129.01.T01:CDS	30.0%
	TCTAAGAAAATTCCCCTTAA+TGG	+	Chr4:68611345-68611364	MsG0480022129.01.T01:three_prime_UTR	30.0%
	TTAAAAGTCTCACATCAGAT+AGG	-	Chr4:68610790-68610809	None:intergenic	30.0%
	TTAATCTTAGAAATCGTGGT+TGG	+	Chr4:68610456-68610475	MsG0480022129.01.T01:intron	30.0%
!	ATCGTACATAGTTCTTTTCT+TGG	-	Chr4:68609899-68609918	None:intergenic	30.0%
!	ATTATTATATGGGGAAGCAT+AGG	+	Chr4:68611375-68611394	MsG0480022129.01.T01:three_prime_UTR	30.0%
!	CAAACTTTTCTAATAGGAAG+TGG	-	Chr4:68610139-68610158	None:intergenic	30.0%
!	CGATAATTGATAATATAGGC+CGG	+	Chr4:68611259-68611278	MsG0480022129.01.T01:exon	30.0%
!	CGTTTTTGTAAGATTGAGTT+AGG	-	Chr4:68610717-68610736	None:intergenic	30.0%
!	GATAATTGATAATATAGGCC+GGG	+	Chr4:68611260-68611279	MsG0480022129.01.T01:exon	30.0%
!	TCGTACATAGTTCTTTTCTT+GGG	-	Chr4:68609898-68609917	None:intergenic	30.0%
!	TTGGAAGGATTTTCATGTTA+GGG	+	Chr4:68611487-68611506	MsG0480022129.01.T01:three_prime_UTR	30.0%
!!	AATGTTCTGAAATTTACGCT+TGG	-	Chr4:68609750-68609769	None:intergenic	30.0%
!!	TGAATTTTGATCTGAATGTG+AGG	+	Chr4:68609647-68609666	MsG0480022129.01.T01:intron	30.0%
!!!	ACAAGTATGTTTTTGGTGTT+TGG	-	Chr4:68609375-68609394	None:intergenic	30.0%
!!!	ATAAGCTAGTTTTGTTGAGT+TGG	-	Chr4:68610489-68610508	None:intergenic	30.0%
!!!	TAAGCTAGTTTTGTTGAGTT+GGG	-	Chr4:68610488-68610507	None:intergenic	30.0%
!!!	TCCTTTTTAGTTGTTGAGTT+TGG	+	Chr4:68609422-68609441	MsG0480022129.01.T01:five_prime_UTR	30.0%
	AAAAGAACTATGTACGATGC+TGG	+	Chr4:68609901-68609920	MsG0480022129.01.T01:CDS	35.0%
	AAACTGTGCTGCAAGTTTAA+AGG	-	Chr4:68610871-68610890	None:intergenic	35.0%
	AAAGACATTCTTAGGGGTTT+AGG	+	Chr4:68610996-68611015	MsG0480022129.01.T01:intron	35.0%
	AAGGATTCATCAACCATAGA+TGG	-	Chr4:68611214-68611233	None:intergenic	35.0%
	AATTTCAATGCATGCAGCAA+TGG	+	Chr4:68609681-68609700	MsG0480022129.01.T01:intron	35.0%
	AGAGTCCTTCAATGTATTGT+GGG	+	Chr4:68611185-68611204	MsG0480022129.01.T01:CDS	35.0%
	AGCGAAAACTTAATAGCAGA+TGG	+	Chr4:68610639-68610658	MsG0480022129.01.T01:intron	35.0%
	CATAAAAGAAATGGTAGGAG+AGG	-	Chr4:68611420-68611439	None:intergenic	35.0%
	CATGTCACAAAGACATTCTT+AGG	+	Chr4:68610988-68611007	MsG0480022129.01.T01:intron	35.0%
	CTAAGAATGTCTTTGTGACA+TGG	-	Chr4:68610990-68611009	None:intergenic	35.0%
	CTATGGGTACTTATATCCTA+AGG	+	Chr4:68610205-68610224	MsG0480022129.01.T01:intron	35.0%
	CTGTAGTAAGATGACGATAA+TGG	-	Chr4:68609509-68609528	None:intergenic	35.0%
	CTTAATAGCAGATGGTCTAA+CGG	+	Chr4:68610647-68610666	MsG0480022129.01.T01:intron	35.0%
	GAAACCGGATACCAAAAATA+TGG	-	Chr4:68611286-68611305	None:intergenic	35.0%
	GGATCAAATGAATGAGTAGA+TGG	+	Chr4:68610433-68610452	MsG0480022129.01.T01:intron	35.0%
	TAAAGAGTCTCACATCGAAT+AGG	-	Chr4:68610557-68610576	None:intergenic	35.0%
	TGATACCATCTTAGAAATCG+TGG	+	Chr4:68610686-68610705	MsG0480022129.01.T01:intron	35.0%
	TGTCACAAAGACATTCTTAG+GGG	+	Chr4:68610990-68611009	MsG0480022129.01.T01:intron	35.0%
	TTATTGCAGGAGAAGGTTTA+TGG	+	Chr4:68611115-68611134	MsG0480022129.01.T01:intron	35.0%
	TTGGCTTCACTCAATAAAGA+AGG	-	Chr4:68609731-68609750	None:intergenic	35.0%
!	AACAAAACTAGCTTATGAGG+TGG	+	Chr4:68610493-68610512	MsG0480022129.01.T01:intron	35.0%
!	AAGCTGATAGTGTATTTCAG+TGG	+	Chr4:68611559-68611578	MsG0480022129.01.T01:three_prime_UTR	35.0%
!	ACAAAACTAGCTTATGAGGT+GGG	+	Chr4:68610494-68610513	MsG0480022129.01.T01:intron	35.0%
!	CTCAACAAAACTAGCTTATG+AGG	+	Chr4:68610490-68610509	MsG0480022129.01.T01:intron	35.0%
!	GTTGGAAGGATTTTCATGTT+AGG	+	Chr4:68611486-68611505	MsG0480022129.01.T01:three_prime_UTR	35.0%
!	TTCTGATTTTGTGGACGAAA+TGG	+	Chr4:68610068-68610087	MsG0480022129.01.T01:CDS	35.0%
	AACACTTCCTCTCTTAGCAA+AGG	-	Chr4:68611233-68611252	None:intergenic	40.0%
	ACCATCTTAGAAATCGTGGT+TGG	+	Chr4:68610690-68610709	MsG0480022129.01.T01:intron	40.0%
	ATATGGGGCATGGACATAAA+TGG	+	Chr4:68610603-68610622	MsG0480022129.01.T01:intron	40.0%
	ATGAGATAAGGCGTGCTTAT+AGG	+	Chr4:68609561-68609580	MsG0480022129.01.T01:CDS	40.0%
	CCATCTTAGAAATCGTGGTT+GGG	+	Chr4:68610691-68610710	MsG0480022129.01.T01:intron	40.0%
	GAGAGTCCTTCAATGTATTG+TGG	+	Chr4:68611184-68611203	MsG0480022129.01.T01:CDS	40.0%
	GATGAATCCTTTGCTAAGAG+AGG	+	Chr4:68611223-68611242	MsG0480022129.01.T01:CDS	40.0%
	GGAGAAGGTTTATGGTTTAG+AGG	+	Chr4:68611123-68611142	MsG0480022129.01.T01:intron	40.0%
	GGTGCTTCACTAATTCTGAT+AGG	+	Chr4:68611445-68611464	MsG0480022129.01.T01:three_prime_UTR	40.0%
	TTATGGTTTAGAGGAGTTGC+AGG	+	Chr4:68611132-68611151	MsG0480022129.01.T01:CDS	40.0%
	TTGTACGGAAGGTAACAACT+CGG	+	Chr4:68610390-68610409	MsG0480022129.01.T01:intron	40.0%
!	CAAAACTAGCTTATGAGGTG+GGG	+	Chr4:68610495-68610514	MsG0480022129.01.T01:intron	40.0%
!	CACTGTTCTTTTCTCTGTGT+TGG	+	Chr4:68611468-68611487	MsG0480022129.01.T01:three_prime_UTR	40.0%
!	GAAGGATTTTCATGTTAGGG+TGG	+	Chr4:68611490-68611509	MsG0480022129.01.T01:three_prime_UTR	40.0%
!	GTTCTTTTCTCTGTGTTGGA+AGG	+	Chr4:68611472-68611491	MsG0480022129.01.T01:three_prime_UTR	40.0%
!	TATATGGGGAAGCATAGGAT+AGG	+	Chr4:68611380-68611399	MsG0480022129.01.T01:three_prime_UTR	40.0%
!!	TGCTTATAGGAAGCTTGCTA+TGG	+	Chr4:68609574-68609593	MsG0480022129.01.T01:CDS	40.0%
	ACCTCATCTTCTTCCTCTTG+AGG	-	Chr4:68609937-68609956	None:intergenic	45.0%
	ATGTTCATGGAGATGGCTGA+AGG	+	Chr4:68611157-68611176	MsG0480022129.01.T01:CDS	45.0%
	CAAAAACGGTTTGTGAGACG+AGG	+	Chr4:68610729-68610748	MsG0480022129.01.T01:intron	45.0%
	CGGATACCAAAAATATGGCC+CGG	-	Chr4:68611281-68611300	None:intergenic	45.0%
	GGTGTCCCACAATACATTGA+AGG	-	Chr4:68611193-68611212	None:intergenic	45.0%
	GTATTGTGGGACACCATCTA+TGG	+	Chr4:68611198-68611217	MsG0480022129.01.T01:CDS	45.0%
	GTCTCACATCGAATAGGAGA+TGG	-	Chr4:68610551-68610570	None:intergenic	45.0%
	TCCTCAAGAGGAAGAAGATG+AGG	+	Chr4:68609933-68609952	MsG0480022129.01.T01:CDS	45.0%
	TCGCCTAACTTCAGCCATAA+GGG	-	Chr4:68610097-68610116	None:intergenic	45.0%
	TGTCCCTTATGGCTGAAGTT+AGG	+	Chr4:68610091-68610110	MsG0480022129.01.T01:CDS	45.0%
!	CCCAACCACGATTTCTAAGA+TGG	-	Chr4:68610694-68610713	None:intergenic	45.0%
!	GATGGTCTAACGGATCTTAG+AGG	+	Chr4:68610657-68610676	MsG0480022129.01.T01:intron	45.0%
!	GGGAAGCATAGGATAGGAAT+AGG	+	Chr4:68611386-68611405	MsG0480022129.01.T01:three_prime_UTR	45.0%
!	TATAGGCCGGGCCATATTTT+TGG	+	Chr4:68611272-68611291	MsG0480022129.01.T01:three_prime_UTR	45.0%
!	TGGCTTGTATGATCCTCAAG+AGG	+	Chr4:68609921-68609940	MsG0480022129.01.T01:CDS	45.0%
!!!	CGGGCCATATTTTTGGTATC+CGG	+	Chr4:68611279-68611298	MsG0480022129.01.T01:three_prime_UTR	45.0%
	AGGACTAGACATATGGGGCA+TGG	+	Chr4:68610593-68610612	MsG0480022129.01.T01:intron	50.0%
	ATGCCCCATATGTCTAGTCC+TGG	-	Chr4:68610594-68610613	None:intergenic	50.0%
	ATGTCTAGTCCTGGACGCAA+GGG	-	Chr4:68610585-68610604	None:intergenic	50.0%
	CGTCCAGGACTAGACATATG+GGG	+	Chr4:68610588-68610607	MsG0480022129.01.T01:intron	50.0%
	CTCGCCTAACTTCAGCCATA+AGG	-	Chr4:68610098-68610117	None:intergenic	50.0%
	GCAGGACATGTTCATGGAGA+TGG	+	Chr4:68611150-68611169	MsG0480022129.01.T01:CDS	50.0%
	GCGTCCAGGACTAGACATAT+GGG	+	Chr4:68610587-68610606	MsG0480022129.01.T01:intron	50.0%
	GGACGAAATGGTGTCCCTTA+TGG	+	Chr4:68610080-68610099	MsG0480022129.01.T01:CDS	50.0%
	GGAGTTGCAGGACATGTTCA+TGG	+	Chr4:68611144-68611163	MsG0480022129.01.T01:CDS	50.0%
	GGGGCATGGACATAAATGGT+GGG	+	Chr4:68610607-68610626	MsG0480022129.01.T01:intron	50.0%
	TATGGCTGAAGTTAGGCGAG+AGG	+	Chr4:68610098-68610117	MsG0480022129.01.T01:CDS	50.0%
	TATGTCTAGTCCTGGACGCA+AGG	-	Chr4:68610586-68610605	None:intergenic	50.0%
	TGCGTCCAGGACTAGACATA+TGG	+	Chr4:68610586-68610605	MsG0480022129.01.T01:intron	50.0%
	TGGGGCATGGACATAAATGG+TGG	+	Chr4:68610606-68610625	MsG0480022129.01.T01:intron	50.0%
!	GCATGGACATAAATGGTGGG+TGG	+	Chr4:68610610-68610629	MsG0480022129.01.T01:intron	50.0%
	AGCAATGGCATCCAGACAGG+TGG	+	Chr4:68609696-68609715	MsG0480022129.01.T01:intron	55.0%
	GGTGTTCTTGTCCACCTGTC+TGG	-	Chr4:68609710-68609729	None:intergenic	55.0%
	TGCAGCAATGGCATCCAGAC+AGG	+	Chr4:68609693-68609712	MsG0480022129.01.T01:intron	55.0%
	TGTCTAGTCCTGGACGCAAG+GGG	-	Chr4:68610584-68610603	None:intergenic	55.0%
	TTTAACACCCCCTTGCGTCC+AGG	+	Chr4:68610573-68610592	MsG0480022129.01.T01:intron	55.0%
	GTCTAGTCCTGGACGCAAGG+GGG	-	Chr4:68610583-68610602	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	68609334	68611611	68609334	ID=MsG0480022129.01;Name=MsG0480022129.01
Chr4	mRNA	68609334	68611611	68609334	ID=MsG0480022129.01.T01;Parent=MsG0480022129.01;Name=MsG0480022129.01.T01;_AED=0.50;_eAED=0.50;_QI=151\|1\|1\|1\|0.8\|0.66\|6\|327\|155
Chr4	exon	68609334	68609595	68609334	ID=MsG0480022129.01.T01:exon:860;Parent=MsG0480022129.01.T01
Chr4	exon	68609698	68609785	68609698	ID=MsG0480022129.01.T01:exon:861;Parent=MsG0480022129.01.T01
Chr4	exon	68609884	68609954	68609884	ID=MsG0480022129.01.T01:exon:862;Parent=MsG0480022129.01.T01
Chr4	exon	68610063	68610119	68610063	ID=MsG0480022129.01.T01:exon:863;Parent=MsG0480022129.01.T01
Chr4	exon	68611124	68611515	68611124	ID=MsG0480022129.01.T01:exon:864;Parent=MsG0480022129.01.T01
Chr4	exon	68611536	68611611	68611536	ID=MsG0480022129.01.T01:exon:865;Parent=MsG0480022129.01.T01
Chr4	five_prime_UTR	68609334	68609484	68609334	ID=MsG0480022129.01.T01:five_prime_utr;Parent=MsG0480022129.01.T01
Chr4	CDS	68609485	68609595	68609485	ID=MsG0480022129.01.T01:cds;Parent=MsG0480022129.01.T01
Chr4	CDS	68609698	68609785	68609698	ID=MsG0480022129.01.T01:cds;Parent=MsG0480022129.01.T01
Chr4	CDS	68609884	68609954	68609884	ID=MsG0480022129.01.T01:cds;Parent=MsG0480022129.01.T01
Chr4	CDS	68610063	68610119	68610063	ID=MsG0480022129.01.T01:cds;Parent=MsG0480022129.01.T01
Chr4	CDS	68611124	68611264	68611124	ID=MsG0480022129.01.T01:cds;Parent=MsG0480022129.01.T01
Chr4	three_prime_UTR	68611265	68611515	68611265	ID=MsG0480022129.01.T01:three_prime_utr;Parent=MsG0480022129.01.T01
Chr4	three_prime_UTR	68611536	68611611	68611536	ID=MsG0480022129.01.T01:three_prime_utr;Parent=MsG0480022129.01.T01

Gene Sequence

>MsG0480022129.01.T01

ATGGATGATTATAGTGAAGGGCCATTATCGTCATCTTACTACAGTATTCTTGGTGTTAGTTCTGATTCTTCATTAGATGAGATAAGGCGTGCTTATAGGAAGCTTGCTATGCAATGGCATCCAGACAGGTGGACAAGAACACCTTCTTTATTGAGTGAAGCCAAGCGTAAATTTCAGAACATTCAAGAAGCTTATTCAGTGCTATCTGATCCCAAGAAAAGAACTATGTACGATGCTGGCTTGTATGATCCTCAAGAGGAAGAAGATGAGGATTTTTCTGATTTTGTGGACGAAATGGTGTCCCTTATGGCTGAAGTTAGGCGAGAGGAGAAGGTTTATGGTTTAGAGGAGTTGCAGGACATGTTCATGGAGATGGCTGAAGGATTTGAGAGTCCTTCAATGTATTGTGGGACACCATCTATGGTTGATGAATCCTTTGCTAAGAGAGGAAGTGTTTTGACACGATAA

Protein sequence

>MsG0480022129.01.T01

MDDYSEGPLSSSYYSILGVSSDSSLDEIRRAYRKLAMQWHPDRWTRTPSLLSEAKRKFQNIQEAYSVLSDPKKRTMYDAGLYDPQEEEDEDFSDFVDEMVSLMAEVRREEKVYGLEELQDMFMEMAEGFESPSMYCGTPSMVDESFAKRGSVLTR*