AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022555.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022555.01.T01 MTR_4g092080 90.857 350 16 2 2 349 1 336 0.0 642
MsG0480022555.01.T01 MTR_1g022440 40.643 342 178 5 14 353 9 327 1.59e-92 280
MsG0480022555.01.T01 MTR_1g022445 41.813 342 174 5 14 353 9 327 2.38e-91 277
MsG0480022555.01.T01 MTR_7g074820 39.306 346 185 7 10 351 5 329 3.48e-76 238
MsG0480022555.01.T01 MTR_7g074730 36.416 346 194 6 10 351 5 328 3.66e-74 233
MsG0480022555.01.T01 MTR_7g074880 37.572 346 188 7 10 351 5 326 8.00e-74 232
MsG0480022555.01.T01 MTR_7g074850 38.150 346 189 7 10 351 5 329 3.60e-73 230
MsG0480022555.01.T01 MTR_7g074710 35.838 346 194 6 10 351 5 326 4.67e-70 222
MsG0480022555.01.T01 MTR_4g081440 36.765 340 189 5 12 342 23 345 5.55e-69 220
MsG0480022555.01.T01 MTR_4g081440 37.143 350 173 8 12 342 19 340 8.99e-69 219
MsG0480022555.01.T01 MTR_2g101330 35.465 344 194 8 10 351 2 319 2.79e-63 204
MsG0480022555.01.T01 MTR_3g005210 36.905 336 182 7 14 346 7 315 4.06e-63 204
MsG0480022555.01.T01 MTR_8g062440 37.500 320 171 5 9 326 4 296 1.01e-62 203
MsG0480022555.01.T01 MTR_8g062440 38.154 325 171 6 9 330 4 301 1.65e-62 202
MsG0480022555.01.T01 MTR_4g077100 37.838 333 172 7 4 330 2 305 1.08e-61 201
MsG0480022555.01.T01 MTR_4g077130 37.805 328 169 7 9 330 5 303 2.22e-61 199
MsG0480022555.01.T01 MTR_3g005170 36.095 338 186 7 14 348 11 321 3.36e-61 199
MsG0480022555.01.T01 MTR_4g077100 38.944 303 157 5 4 304 2 278 3.61e-61 197
MsG0480022555.01.T01 MTR_3g005170 38.908 293 151 5 14 304 11 277 4.17e-61 197
MsG0480022555.01.T01 MTR_8g062440 38.037 326 171 7 9 330 4 302 1.28e-60 197
MsG0480022555.01.T01 MTR_8g062110 36.364 341 186 7 9 346 14 326 2.01e-60 197
MsG0480022555.01.T01 MTR_8g062110 36.152 343 188 7 9 348 5 319 2.03e-60 197
MsG0480022555.01.T01 MTR_8g062110 38.047 297 155 5 9 303 5 274 1.07e-59 194
MsG0480022555.01.T01 MTR_8g062110 38.047 297 155 5 9 303 5 274 1.26e-59 194
MsG0480022555.01.T01 MTR_4g009040 36.872 358 186 10 1 352 1 324 1.05e-55 185
MsG0480022555.01.T01 MTR_4g009040 36.464 362 186 11 1 352 1 328 1.22e-53 180
MsG0480022555.01.T01 MTR_7g074870 34.576 295 163 5 61 351 20 288 1.70e-53 178
MsG0480022555.01.T01 MTR_4g023730 32.295 353 202 8 9 351 4 329 2.84e-53 179
MsG0480022555.01.T01 MTR_5g056600 32.267 344 198 8 14 351 5 319 8.53e-53 177
MsG0480022555.01.T01 MTR_2g013230 30.484 351 222 7 9 351 4 340 1.24e-49 169
MsG0480022555.01.T01 MTR_4g009690 36.415 357 188 10 1 352 1 323 3.52e-49 168
MsG0480022555.01.T01 MTR_5g072620 33.429 350 191 11 11 351 3 319 7.96e-49 167
MsG0480022555.01.T01 MTR_3g005170 33.136 338 165 8 14 348 11 290 3.87e-48 164
MsG0480022555.01.T01 MTR_2g013260 30.636 346 218 7 12 349 7 338 6.54e-48 165
MsG0480022555.01.T01 MTR_2g104960 36.364 341 182 11 14 351 21 329 1.97e-47 164
MsG0480022555.01.T01 MTR_4g009690 36.313 358 188 11 1 352 1 324 2.23e-47 163
MsG0480022555.01.T01 MTR_2g013250 30.086 349 222 7 9 349 3 337 9.99e-47 162
MsG0480022555.01.T01 MTR_4g006940 34.018 341 190 10 14 351 18 326 1.28e-45 159
MsG0480022555.01.T01 MTR_4g006940 35.354 297 160 7 11 306 15 280 6.11e-45 155
MsG0480022555.01.T01 MTR_4g006940 35.354 297 160 7 11 306 15 280 6.11e-45 155
MsG0480022555.01.T01 MTR_3g031650 30.659 349 198 9 11 349 3 317 7.07e-45 156
MsG0480022555.01.T01 MTR_7g117190 30.548 347 222 8 12 351 6 340 1.07e-44 157
MsG0480022555.01.T01 MTR_2g013260 31.683 303 186 6 9 303 4 293 7.37e-44 153
MsG0480022555.01.T01 MTR_3g031650 30.667 300 170 6 11 303 3 271 5.76e-42 147
MsG0480022555.01.T01 MTR_2g028620 30.857 350 200 13 14 353 11 328 6.25e-41 146
MsG0480022555.01.T01 MTR_7g117190 31.148 305 192 7 10 307 4 297 2.67e-40 144
MsG0480022555.01.T01 MTR_2g028620 32.323 297 165 10 14 303 11 278 5.83e-40 144
MsG0480022555.01.T01 MTR_8g062110 32.794 247 136 6 102 346 13 231 5.45e-30 115
MsG0480022555.01.T01 MTR_8g062110 34.146 205 107 4 100 303 11 188 3.39e-29 111
MsG0480022555.01.T01 MTR_2g013230 28.175 252 160 6 107 351 13 250 2.00e-27 108
MsG0480022555.01.T01 MTR_0164s0070 38.411 151 89 4 10 156 2 152 3.75e-26 103
MsG0480022555.01.T01 MTR_2g013260 28.000 250 159 6 107 349 32 267 4.54e-25 103
MsG0480022555.01.T01 MTR_7g117190 27.917 240 155 7 118 351 3 230 1.97e-21 92.0
MsG0480022555.01.T01 MTR_6g406250 26.042 288 165 8 6 280 48 300 4.23e-19 87.8
MsG0480022555.01.T01 MTR_3g011130 37.594 133 64 3 103 233 30 145 1.98e-16 75.9
MsG0480022555.01.T01 MTR_0685s0030 33.553 152 85 3 183 330 3 142 4.04e-16 75.5
MsG0480022555.01.T01 MTR_0685s0030 35.246 122 70 1 183 304 3 115 1.98e-15 72.0
MsG0480022555.01.T01 MTR_5g029990 24.912 285 172 11 2 283 1 246 3.34e-15 75.5
MsG0480022555.01.T01 MTR_6g406250 25.328 229 140 5 6 225 48 254 9.16e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022555.01.T01 AT1G61720 57.102 352 137 1 1 352 1 338 1.61e-140 402
MsG0480022555.01.T01 AT5G42800 40.580 345 180 5 9 351 4 325 7.96e-92 280
MsG0480022555.01.T01 AT4G35420 39.067 343 182 7 10 351 5 321 2.41e-73 231
MsG0480022555.01.T01 AT4G27250 36.550 342 188 8 14 343 14 338 6.00e-63 204
MsG0480022555.01.T01 AT1G51410 35.613 351 188 9 9 352 5 324 3.67e-62 202
MsG0480022555.01.T01 AT2G45400 34.985 343 199 6 14 351 41 364 5.16e-61 200
MsG0480022555.01.T01 AT1G09510 39.655 290 147 5 11 298 6 269 1.06e-59 195
MsG0480022555.01.T01 AT4G27250 36.550 342 178 11 14 343 14 328 5.46e-59 194
MsG0480022555.01.T01 AT5G19440 35.174 344 193 7 9 349 6 322 2.71e-57 189
MsG0480022555.01.T01 AT1G09490 38.176 296 153 6 11 303 6 274 9.67e-57 187
MsG0480022555.01.T01 AT2G45400 36.149 296 166 5 14 305 41 317 1.45e-54 182
MsG0480022555.01.T01 AT1G66800 35.143 350 185 10 9 351 4 318 1.49e-54 182
MsG0480022555.01.T01 AT1G09480 38.062 289 149 6 11 296 6 267 1.20e-53 179
MsG0480022555.01.T01 AT1G09480 38.062 289 149 6 11 296 53 314 2.59e-53 180
MsG0480022555.01.T01 AT2G33590 34.897 341 191 9 5 343 1 312 2.89e-53 179
MsG0480022555.01.T01 AT1G09500 39.350 277 129 7 11 279 6 251 7.45e-53 176
MsG0480022555.01.T01 AT2G33600 36.095 338 185 9 8 343 4 312 1.00e-52 177
MsG0480022555.01.T01 AT1G09500 39.350 277 129 7 11 279 6 251 2.07e-52 176
MsG0480022555.01.T01 AT1G68540 31.304 345 200 10 15 351 6 321 1.32e-47 164
MsG0480022555.01.T01 AT2G02400 30.791 354 199 11 8 351 1 318 1.66e-47 163
MsG0480022555.01.T01 AT2G45400 32.566 304 183 5 51 351 23 307 5.43e-47 162
MsG0480022555.01.T01 AT1G76470 34.483 348 197 10 10 353 4 324 1.92e-45 158
MsG0480022555.01.T01 AT5G58490 31.940 335 186 8 9 327 5 313 3.14e-45 157
MsG0480022555.01.T01 AT1G15950 35.806 310 167 8 1 309 1 279 6.50e-45 156
MsG0480022555.01.T01 AT1G25460 30.994 342 203 8 15 351 6 319 3.18e-44 155
MsG0480022555.01.T01 AT1G15950 34.593 344 190 11 11 351 11 322 1.34e-43 154
MsG0480022555.01.T01 AT1G15950 34.593 344 190 11 11 351 11 322 1.34e-43 154
MsG0480022555.01.T01 AT1G80820 34.006 347 194 11 8 351 3 317 3.02e-43 152
MsG0480022555.01.T01 AT1G15950 34.639 332 183 10 11 339 11 311 8.47e-43 152
MsG0480022555.01.T01 AT1G15950 35.179 307 167 8 1 306 1 276 2.44e-42 149
MsG0480022555.01.T01 AT1G15950 35.294 306 166 8 1 305 1 275 3.88e-42 148
MsG0480022555.01.T01 AT1G80820 35.667 300 161 8 8 306 3 271 1.44e-41 146
MsG0480022555.01.T01 AT1G09490 36.434 258 134 6 49 303 13 243 1.57e-41 147
MsG0480022555.01.T01 AT1G09500 37.705 244 113 7 44 279 5 217 2.20e-38 139
MsG0480022555.01.T01 AT2G45400 37.445 227 126 4 14 236 41 255 2.39e-38 137
MsG0480022555.01.T01 AT2G23910 25.926 270 166 8 13 280 10 247 1.73e-23 98.6
MsG0480022555.01.T01 AT2G23910 25.926 270 166 8 13 280 10 247 2.04e-23 98.6
MsG0480022555.01.T01 AT2G23910 25.926 270 166 8 13 280 10 247 2.05e-23 99.0
MsG0480022555.01.T01 AT4G30470 24.074 270 170 7 13 280 10 246 5.01e-22 95.1
MsG0480022555.01.T01 AT1G15950 30.677 251 145 7 103 351 1 224 3.46e-21 91.7
MsG0480022555.01.T01 AT1G68540 26.033 242 146 7 115 351 1 214 3.52e-21 90.9
MsG0480022555.01.T01 AT2G23910 29.480 173 94 4 108 280 69 213 7.22e-18 82.8
MsG0480022555.01.T01 AT5G14700 27.046 281 160 10 14 280 56 305 3.43e-17 82.4
MsG0480022555.01.T01 AT5G14700 28.505 214 126 7 14 218 56 251 1.19e-14 73.9
MsG0480022555.01.T01 AT4G33360 26.596 282 164 9 7 286 9 249 1.82e-13 70.5
MsG0480022555.01.T01 AT4G33360 26.596 282 164 9 7 286 9 249 2.66e-13 70.5
MsG0480022555.01.T01 AT4G33360 26.715 277 160 9 12 286 2 237 1.04e-12 68.6

Find 60 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTTAAGATTTCAAATA+AGG 0.212023 4:-74049835 MsG0480022555.01.T01:intron
GATTATCAACTTTGCCTTGC+TGG 0.226247 4:+74048759 None:intergenic
CCTCATAGCACTGCAAAGTT+TGG 0.275725 4:-74050418 MsG0480022555.01.T01:CDS
CGAAGGGACTGGTCATATTA+TGG 0.276006 4:-74050021 MsG0480022555.01.T01:CDS
TTCAATACACCTTTGATTGC+TGG 0.333253 4:+74050128 None:intergenic
TAAAATTGAATACATGGTTA+TGG 0.340343 4:-74049853 MsG0480022555.01.T01:CDS
TCTTCAAATACTCCAGAGTT+TGG 0.365279 4:+74048674 None:intergenic
TTCCTTTCAAAGCATTTATG+AGG 0.388148 4:+74049191 None:intergenic
ATTCCCATGGAAACACTAGA+TGG 0.394524 4:+74049330 None:intergenic
TCTGAAAAGCTTATCAAAGA+AGG 0.411453 4:-74048733 MsG0480022555.01.T01:CDS
AAGAAGAAGGCATGTGTGAT+AGG 0.414338 4:-74051053 MsG0480022555.01.T01:CDS
CTCATAGCACTGCAAAGTTT+GGG 0.415377 4:-74050417 MsG0480022555.01.T01:CDS
TATCAAAATCTACTTCTTCA+AGG 0.417228 4:+74048642 None:intergenic
ATGGGAATGTCACTTCTAAC+AGG 0.424075 4:-74049315 MsG0480022555.01.T01:intron
CTCAAAAGTGCTAGCTGAAA+AGG 0.425883 4:-74049442 MsG0480022555.01.T01:CDS
GTGATACCTACTCTAACAAT+TGG 0.428631 4:-74049375 MsG0480022555.01.T01:CDS
ACAAGTTCACATCCTGCTAT+AGG 0.437816 4:+74050342 None:intergenic
GATCAAGCAGTTGCTTGAAA+AGG 0.456606 4:-74051003 MsG0480022555.01.T01:CDS
AAAGGAATGCAGATCCTGTC+AGG 0.463412 4:-74049175 MsG0480022555.01.T01:CDS
GCAGAATTAACAGTTGAAGA+AGG 0.464472 4:-74050375 MsG0480022555.01.T01:CDS
CTGAGAAACTTAGCAAGCTC+AGG 0.468414 4:+74049043 None:intergenic
ATCAAGCAGTTGCTTGAAAA+GGG 0.470848 4:-74051002 MsG0480022555.01.T01:CDS
TATCCCATCTAGTGTTTCCA+TGG 0.473150 4:-74049334 MsG0480022555.01.T01:CDS
TTCCTCATAAATGCTTTGAA+AGG 0.475020 4:-74049193 MsG0480022555.01.T01:CDS
GCAGTTTAAAATTGAATACA+TGG 0.475244 4:-74049859 MsG0480022555.01.T01:intron
TGACTTCAAGCTTACTCAGT+TGG 0.478141 4:+74048995 None:intergenic
CCAAACTTTGCAGTGCTATG+AGG 0.494447 4:+74050418 None:intergenic
ATATTATGGATGAAACCAAC+TGG 0.503991 4:-74050007 MsG0480022555.01.T01:CDS
CTGAAAAGCTTATCAAAGAA+GGG 0.506098 4:-74048732 MsG0480022555.01.T01:CDS
TCTTGAGAGGCAAAGTTCAC+AGG 0.513934 4:+74050303 None:intergenic
CACTGCAAAGCCACCCACTT+GGG 0.520500 4:-74049964 MsG0480022555.01.T01:intron
TCTGGAGTATTTGAAGACTC+AGG 0.526497 4:-74048668 MsG0480022555.01.T01:CDS
CTGCTACAAATATATGAGCT+CGG 0.536593 4:+74049119 None:intergenic
TGCTAGCTGAAAAGGCTGCA+TGG 0.537823 4:-74049434 MsG0480022555.01.T01:CDS
TGATGGATATCGAACCTGAC+AGG 0.542607 4:+74049161 None:intergenic
CTGGAGTATTTGAAGACTCA+GGG 0.551188 4:-74048667 MsG0480022555.01.T01:CDS
AGTTCACAGGTGTAGCAAGT+TGG 0.553446 4:+74050316 None:intergenic
GAAGGACCAATTGTTAGAGT+AGG 0.556874 4:+74049369 None:intergenic
CAAACAAATAGAAAAGAAGA+AGG 0.557146 4:-74051066 MsG0480022555.01.T01:CDS
AAACTCAACATCAGACCAGT+TGG 0.559402 4:+74049992 None:intergenic
GCATGTGTGATAGGTGGCAC+TGG 0.564473 4:-74051044 MsG0480022555.01.T01:CDS
ATGATAAAACCAGCAATCAA+AGG 0.568131 4:-74050137 MsG0480022555.01.T01:CDS
ACACTGCAAAGCCACCCACT+TGG 0.573692 4:-74049965 MsG0480022555.01.T01:CDS
AATATCCTCGACATGAGTGA+TGG 0.579257 4:+74049144 None:intergenic
ATAAACGAACTCGAAGGGAC+TGG 0.592956 4:-74050032 MsG0480022555.01.T01:CDS
ATTTGATGATTGCTCCAGCA+AGG 0.593062 4:-74048773 MsG0480022555.01.T01:CDS
ATCCCATCTAGTGTTTCCAT+GGG 0.594221 4:-74049333 MsG0480022555.01.T01:CDS
GGGATATCTTGTGTTAGAGA+AGG 0.600247 4:+74049351 None:intergenic
GAAGGGTTCAGTTTCAAGCA+TGG 0.601008 4:-74048715 MsG0480022555.01.T01:CDS
AATACTACTGTTAGAGACCC+AGG 0.604643 4:-74050969 MsG0480022555.01.T01:intron
ACCTACCTCGGGATCTTGAG+AGG 0.609339 4:+74050290 None:intergenic
TTCCCATGGAAACACTAGAT+GGG 0.620353 4:+74049331 None:intergenic
GTGACTATAAACGAACTCGA+AGG 0.630121 4:-74050038 MsG0480022555.01.T01:CDS
TGACTATAAACGAACTCGAA+GGG 0.632588 4:-74050037 MsG0480022555.01.T01:CDS
CTTTGCCTCTCAAGATCCCG+AGG 0.635384 4:-74050295 MsG0480022555.01.T01:intron
TGTTAGAAGTGACATTCCCA+TGG 0.640999 4:+74049317 None:intergenic
GATATCCATCACTCATGTCG+AGG 0.645745 4:-74049149 MsG0480022555.01.T01:CDS
AAGAAGGCATGTGTGATAGG+TGG 0.652368 4:-74051050 MsG0480022555.01.T01:CDS
GGAGTATTTGAAGACTCAGG+GGG 0.662530 4:-74048665 MsG0480022555.01.T01:CDS
TGGAGTATTTGAAGACTCAG+GGG 0.686930 4:-74048666 MsG0480022555.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTCAAAAATTAATTCAATT+AGG + Chr4:74049506-74049525 None:intergenic 15.0%
!! TGCAATTCATATATATATTA+TGG + Chr4:74050118-74050137 None:intergenic 15.0%
!!! CACACAATATTTTAATATTT+TGG + Chr4:74048870-74048889 None:intergenic 15.0%
!! AATCCTTAAACCATTTAATT+TGG + Chr4:74050452-74050471 None:intergenic 20.0%
!! ATAACCATTTAAATTGTTGT+CGG + Chr4:74049852-74049871 None:intergenic 20.0%
!! TAAAATTGAATACATGGTTA+TGG - Chr4:74049878-74049897 MsG0480022555.01.T01:intron 20.0%
!! TATGGTTAAGATTTCAAATA+AGG - Chr4:74049896-74049915 MsG0480022555.01.T01:intron 20.0%
!!! ATCTCAATTTTATATTTTGC+AGG - Chr4:74050508-74050527 MsG0480022555.01.T01:intron 20.0%
!!! ATTTTTGAAGTATATGCATT+TGG - Chr4:74049516-74049535 MsG0480022555.01.T01:intron 20.0%
!!! CTGTAATTTTGACAAAATTA+CGG - Chr4:74049125-74049144 MsG0480022555.01.T01:CDS 20.0%
!!! TAATTTTGTCAAAATTACAG+TGG + Chr4:74049125-74049144 None:intergenic 20.0%
!!! TAGATCAATGTTATTTTCTT+CGG + Chr4:74050330-74050349 None:intergenic 20.0%
!!! TCGTGTTTAATTTTTTTCAA+TGG - Chr4:74050073-74050092 MsG0480022555.01.T01:CDS 20.0%
! AAAAAATGAAACTTTGCCTT+AGG + Chr4:74050930-74050949 None:intergenic 25.0%
! AAATTATCATCAAAATGTGC+AGG - Chr4:74050256-74050275 MsG0480022555.01.T01:intron 25.0%
! AATGATTATTTCATAGTGCT+CGG - Chr4:74050828-74050847 MsG0480022555.01.T01:intron 25.0%
! AATTATCATCAAAATGTGCA+GGG - Chr4:74050257-74050276 MsG0480022555.01.T01:intron 25.0%
! ATACATTACCTATCTTTCAA+AGG - Chr4:74050878-74050897 MsG0480022555.01.T01:intron 25.0%
! ATCATTTATGTACTCAACTT+AGG - Chr4:74050194-74050213 MsG0480022555.01.T01:intron 25.0%
! CAAACAAATAGAAAAGAAGA+AGG - Chr4:74048665-74048684 MsG0480022555.01.T01:CDS 25.0%
! CATATATATATTATGGTCAG+CGG + Chr4:74050111-74050130 None:intergenic 25.0%
! CCAGATTATTGACATAAAAT+GGG - Chr4:74049816-74049835 MsG0480022555.01.T01:intron 25.0%
! CGATAAATTTGACAAAATCA+TGG + Chr4:74049156-74049175 None:intergenic 25.0%
! TCCAGATTATTGACATAAAA+TGG - Chr4:74049815-74049834 MsG0480022555.01.T01:intron 25.0%
! TGAAAAACAGCCAAATTAAA+TGG - Chr4:74050439-74050458 MsG0480022555.01.T01:CDS 25.0%
! TGAATTAGCGATTAAAAAAC+TGG + Chr4:74048896-74048915 None:intergenic 25.0%
! TTCAAATTGTTGTCGATATT+TGG - Chr4:74050151-74050170 MsG0480022555.01.T01:intron 25.0%
!! AGATTTCAAATAAGGTATCA+TGG - Chr4:74049904-74049923 MsG0480022555.01.T01:intron 25.0%
!! CCAATTAGAAATGATAATGA+GGG + Chr4:74050233-74050252 None:intergenic 25.0%
!! GCAGTTTAAAATTGAATACA+TGG - Chr4:74049872-74049891 MsG0480022555.01.T01:intron 25.0%
!! TCCAATTAGAAATGATAATG+AGG + Chr4:74050234-74050253 None:intergenic 25.0%
!!! GTTTTTTAATCGCTAATTCA+TGG - Chr4:74048896-74048915 MsG0480022555.01.T01:intron 25.0%
AAATGGTTTAAGGATTTCCA+AGG - Chr4:74050456-74050475 MsG0480022555.01.T01:intron 30.0%
ACGTATATTTGAACACAGTT+TGG - Chr4:74049989-74050008 MsG0480022555.01.T01:CDS 30.0%
ATATTATGGATGAAACCAAC+TGG - Chr4:74049724-74049743 MsG0480022555.01.T01:intron 30.0%
ATGATAAAACCAGCAATCAA+AGG - Chr4:74049594-74049613 MsG0480022555.01.T01:intron 30.0%
ATGTTCAGTGAATGGTTAAT+AGG + Chr4:74049930-74049949 None:intergenic 30.0%
CAGCCAAATTAAATGGTTTA+AGG - Chr4:74050446-74050465 MsG0480022555.01.T01:intron 30.0%
CCCTCATTATCATTTCTAAT+TGG - Chr4:74050230-74050249 MsG0480022555.01.T01:intron 30.0%
CTGAAAAGCTTATCAAAGAA+GGG - Chr4:74050999-74051018 MsG0480022555.01.T01:CDS 30.0%
GAAATAATCATTGTTCTCTG+TGG + Chr4:74050820-74050839 None:intergenic 30.0%
GAGAATGACATTCAAAATCT+TGG + Chr4:74049959-74049978 None:intergenic 30.0%
GTTTCCGACAACAATTTAAA+TGG - Chr4:74049845-74049864 MsG0480022555.01.T01:CDS 30.0%
TCAAATATACGTGAAAAACG+TGG + Chr4:74049981-74050000 None:intergenic 30.0%
TCTGAAAAGCTTATCAAAGA+AGG - Chr4:74050998-74051017 MsG0480022555.01.T01:CDS 30.0%
! AGGAAAATCCTTTGAAAGAT+AGG + Chr4:74050889-74050908 None:intergenic 30.0%
! ATGACACATGCAATTCTTTT+TGG + Chr4:74048975-74048994 None:intergenic 30.0%
! CCCATTTTATGTCAATAATC+TGG + Chr4:74049819-74049838 None:intergenic 30.0%
! GACAACAATTTGAAACTGAA+TGG + Chr4:74050145-74050164 None:intergenic 30.0%
! TGACACATGCAATTCTTTTT+GGG + Chr4:74048974-74048993 None:intergenic 30.0%
! TTCCTCATAAATGCTTTGAA+AGG - Chr4:74050538-74050557 MsG0480022555.01.T01:intron 30.0%
! TTCCTTTCAAAGCATTTATG+AGG + Chr4:74050543-74050562 None:intergenic 30.0%
!! AAGTTTGATTTTTACCCAAG+TGG + Chr4:74049784-74049803 None:intergenic 30.0%
!! AGTTTGATTTTTACCCAAGT+GGG + Chr4:74049783-74049802 None:intergenic 30.0%
!!! CGCTATTGAAGTAGTTTTAT+AGG - Chr4:74049205-74049224 MsG0480022555.01.T01:intron 30.0%
AACTACTTCAATAGCGAGAT+AGG + Chr4:74049201-74049220 None:intergenic 35.0%
ATCAAGCAGTTGCTTGAAAA+GGG - Chr4:74048729-74048748 MsG0480022555.01.T01:CDS 35.0%
CTGCTACAAATATATGAGCT+CGG + Chr4:74050615-74050634 None:intergenic 35.0%
GCAGAATTAACAGTTGAAGA+AGG - Chr4:74049356-74049375 MsG0480022555.01.T01:CDS 35.0%
GGTTAATGATGTTCAGTGAA+TGG + Chr4:74049938-74049957 None:intergenic 35.0%
GTGATACCTACTCTAACAAT+TGG - Chr4:74050356-74050375 MsG0480022555.01.T01:CDS 35.0%
TCTTCAAATACTCCAGAGTT+TGG + Chr4:74051060-74051079 None:intergenic 35.0%
TGACTATAAACGAACTCGAA+GGG - Chr4:74049694-74049713 MsG0480022555.01.T01:intron 35.0%
TGTGCTTAAGAGATTGTGTT+TGG + Chr4:74049081-74049100 None:intergenic 35.0%
TTCAATACACCTTTGATTGC+TGG + Chr4:74049606-74049625 None:intergenic 35.0%
! ATCAGCATTAGTTTCTCCTA+AGG - Chr4:74050911-74050930 MsG0480022555.01.T01:intron 35.0%
! TAGAAATGATAATGAGGGCA+GGG + Chr4:74050228-74050247 None:intergenic 35.0%
! TGAAACTTTTGACCAAACTC+TGG - Chr4:74051045-74051064 MsG0480022555.01.T01:CDS 35.0%
! TTAGAAATGATAATGAGGGC+AGG + Chr4:74050229-74050248 None:intergenic 35.0%
!! GTCTCAAAACAAGAAGTACT+AGG - Chr4:74049175-74049194 MsG0480022555.01.T01:CDS 35.0%
!!! TCTTAAGCACATGTTTTGAC+CGG - Chr4:74049090-74049109 MsG0480022555.01.T01:CDS 35.0%
AAACTCAACATCAGACCAGT+TGG + Chr4:74049742-74049761 None:intergenic 40.0%
AATACTACTGTTAGAGACCC+AGG - Chr4:74048762-74048781 MsG0480022555.01.T01:CDS 40.0%
AATATCCTCGACATGAGTGA+TGG + Chr4:74050590-74050609 None:intergenic 40.0%
ACAAGTTCACATCCTGCTAT+AGG + Chr4:74049392-74049411 None:intergenic 40.0%
AGATGTTAAGAGAGAGACCT+GGG + Chr4:74048782-74048801 None:intergenic 40.0%
ATCCCATCTAGTGTTTCCAT+GGG - Chr4:74050398-74050417 MsG0480022555.01.T01:CDS 40.0%
ATTCCCATGGAAACACTAGA+TGG + Chr4:74050404-74050423 None:intergenic 40.0%
ATTTGAACACCTGAAAGTCG+TGG - Chr4:74050034-74050053 MsG0480022555.01.T01:CDS 40.0%
CTCATAGCACTGCAAAGTTT+GGG - Chr4:74049314-74049333 MsG0480022555.01.T01:intron 40.0%
GAAGGACCAATTGTTAGAGT+AGG + Chr4:74050365-74050384 None:intergenic 40.0%
GAGTCTTTGTGTATTGTCCT+TGG + Chr4:74050476-74050495 None:intergenic 40.0%
GATCAAGCAGTTGCTTGAAA+AGG - Chr4:74048728-74048747 MsG0480022555.01.T01:CDS 40.0%
GATTATCAACTTTGCCTTGC+TGG + Chr4:74050975-74050994 None:intergenic 40.0%
GCAGAAAAAGAATCAGCTTC+TGG - Chr4:74050631-74050650 MsG0480022555.01.T01:intron 40.0%
GGAGAAACTAATGCTGATGA+AGG + Chr4:74050909-74050928 None:intergenic 40.0%
GGGATATCTTGTGTTAGAGA+AGG + Chr4:74050383-74050402 None:intergenic 40.0%
GTGACTATAAACGAACTCGA+AGG - Chr4:74049693-74049712 MsG0480022555.01.T01:intron 40.0%
GTTTAGCAATCAACCTACCT+CGG + Chr4:74049456-74049475 None:intergenic 40.0%
TATCCCATCTAGTGTTTCCA+TGG - Chr4:74050397-74050416 MsG0480022555.01.T01:CDS 40.0%
TGACTTCAAGCTTACTCAGT+TGG + Chr4:74050739-74050758 None:intergenic 40.0%
TGTTAGAAGTGACATTCCCA+TGG + Chr4:74050417-74050436 None:intergenic 40.0%
TTCCCATGGAAACACTAGAT+GGG + Chr4:74050403-74050422 None:intergenic 40.0%
TTTAGCAATCAACCTACCTC+GGG + Chr4:74049455-74049474 None:intergenic 40.0%
TTTGAACTTTGCAGCTTCAG+AGG + Chr4:74050791-74050810 None:intergenic 40.0%
! AAGAAGAAGGCATGTGTGAT+AGG - Chr4:74048678-74048697 MsG0480022555.01.T01:CDS 40.0%
! ATGGGAATGTCACTTCTAAC+AGG - Chr4:74050416-74050435 MsG0480022555.01.T01:CDS 40.0%
! ATTTGATGATTGCTCCAGCA+AGG - Chr4:74050958-74050977 MsG0480022555.01.T01:intron 40.0%
! CTGGAGTATTTGAAGACTCA+GGG - Chr4:74051064-74051083 MsG0480022555.01.T01:CDS 40.0%
! TCTGGAGTATTTGAAGACTC+AGG - Chr4:74051063-74051082 MsG0480022555.01.T01:CDS 40.0%
! TGGAGTATTTGAAGACTCAG+GGG - Chr4:74051065-74051084 MsG0480022555.01.T01:CDS 40.0%
! TTGATTTTTACCCAAGTGGG+TGG + Chr4:74049780-74049799 None:intergenic 40.0%
!! CTCAAAAGTGCTAGCTGAAA+AGG - Chr4:74050289-74050308 MsG0480022555.01.T01:intron 40.0%
AAAGGAATGCAGATCCTGTC+AGG - Chr4:74050556-74050575 MsG0480022555.01.T01:intron 45.0%
AGTTCACAGGTGTAGCAAGT+TGG + Chr4:74049418-74049437 None:intergenic 45.0%
ATAAACGAACTCGAAGGGAC+TGG - Chr4:74049699-74049718 MsG0480022555.01.T01:intron 45.0%
ATTACAGTGGCACACTTCTC+CGG + Chr4:74049112-74049131 None:intergenic 45.0%
CCAAACTTTGCAGTGCTATG+AGG + Chr4:74049316-74049335 None:intergenic 45.0%
CCTCATAGCACTGCAAAGTT+TGG - Chr4:74049313-74049332 MsG0480022555.01.T01:intron 45.0%
CTGAGAAACTTAGCAAGCTC+AGG + Chr4:74050691-74050710 None:intergenic 45.0%
GAAGGGTTCAGTTTCAAGCA+TGG - Chr4:74051016-74051035 MsG0480022555.01.T01:CDS 45.0%
GAGATGTTAAGAGAGAGACC+TGG + Chr4:74048783-74048802 None:intergenic 45.0%
GATATCCATCACTCATGTCG+AGG - Chr4:74050582-74050601 MsG0480022555.01.T01:intron 45.0%
TCTTGAGAGGCAAAGTTCAC+AGG + Chr4:74049431-74049450 None:intergenic 45.0%
! AAGAAGGCATGTGTGATAGG+TGG - Chr4:74048681-74048700 MsG0480022555.01.T01:CDS 45.0%
! GGAGTATTTGAAGACTCAGG+GGG - Chr4:74051066-74051085 MsG0480022555.01.T01:CDS 45.0%
! TGATGGATATCGAACCTGAC+AGG + Chr4:74050573-74050592 None:intergenic 45.0%
!! CGAAGGGACTGGTCATATTA+TGG - Chr4:74049710-74049729 MsG0480022555.01.T01:intron 45.0%
!! GGTTTTGATGCTCCTATAGC+AGG - Chr4:74049377-74049396 MsG0480022555.01.T01:CDS 45.0%
!!! TCAGCTAGCACTTTTGAGAC+AGG + Chr4:74050287-74050306 None:intergenic 45.0%
CCTCATTGACCACGACTTTC+AGG + Chr4:74050046-74050065 None:intergenic 50.0%
CCTGAAAGTCGTGGTCAATG+AGG - Chr4:74050043-74050062 MsG0480022555.01.T01:CDS 50.0%
TGCTAGCTGAAAAGGCTGCA+TGG - Chr4:74050297-74050316 MsG0480022555.01.T01:CDS 50.0%
!!! GATAGGTGGCACTGGTTTTG+TGG - Chr4:74048695-74048714 MsG0480022555.01.T01:CDS 50.0%
ACACTGCAAAGCCACCCACT+TGG - Chr4:74049766-74049785 MsG0480022555.01.T01:intron 55.0%
ACCTACCTCGGGATCTTGAG+AGG + Chr4:74049444-74049463 None:intergenic 55.0%
CACTGCAAAGCCACCCACTT+GGG - Chr4:74049767-74049786 MsG0480022555.01.T01:intron 55.0%
CTTTGCCTCTCAAGATCCCG+AGG - Chr4:74049436-74049455 MsG0480022555.01.T01:CDS 55.0%
GCATGTGTGATAGGTGGCAC+TGG - Chr4:74048687-74048706 MsG0480022555.01.T01:CDS 55.0%
GCCTCTCAAGATCCCGAGGT+AGG - Chr4:74049440-74049459 MsG0480022555.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 74048651 74051102 74048651 ID=MsG0480022555.01;Name=MsG0480022555.01
Chr4 mRNA 74048651 74051102 74048651 ID=MsG0480022555.01.T01;Parent=MsG0480022555.01;Name=MsG0480022555.01.T01;_AED=0.42;_eAED=0.45;_QI=0|0|0|1|1|1|7|0|353
Chr4 exon 74050970 74051102 74050970 ID=MsG0480022555.01.T01:exon:8449;Parent=MsG0480022555.01.T01
Chr4 exon 74050296 74050462 74050296 ID=MsG0480022555.01.T01:exon:8448;Parent=MsG0480022555.01.T01
Chr4 exon 74049965 74050165 74049965 ID=MsG0480022555.01.T01:exon:8447;Parent=MsG0480022555.01.T01
Chr4 exon 74049836 74049877 74049836 ID=MsG0480022555.01.T01:exon:8446;Parent=MsG0480022555.01.T01
Chr4 exon 74049316 74049475 74049316 ID=MsG0480022555.01.T01:exon:8445;Parent=MsG0480022555.01.T01
Chr4 exon 74049010 74049223 74049010 ID=MsG0480022555.01.T01:exon:8444;Parent=MsG0480022555.01.T01
Chr4 exon 74048651 74048795 74048651 ID=MsG0480022555.01.T01:exon:8443;Parent=MsG0480022555.01.T01
Chr4 CDS 74050970 74051102 74050970 ID=MsG0480022555.01.T01:cds;Parent=MsG0480022555.01.T01
Chr4 CDS 74050296 74050462 74050296 ID=MsG0480022555.01.T01:cds;Parent=MsG0480022555.01.T01
Chr4 CDS 74049965 74050165 74049965 ID=MsG0480022555.01.T01:cds;Parent=MsG0480022555.01.T01
Chr4 CDS 74049836 74049877 74049836 ID=MsG0480022555.01.T01:cds;Parent=MsG0480022555.01.T01
Chr4 CDS 74049316 74049475 74049316 ID=MsG0480022555.01.T01:cds;Parent=MsG0480022555.01.T01
Chr4 CDS 74049010 74049223 74049010 ID=MsG0480022555.01.T01:cds;Parent=MsG0480022555.01.T01
Chr4 CDS 74048651 74048795 74048651 ID=MsG0480022555.01.T01:cds;Parent=MsG0480022555.01.T01
Gene Sequence

>MsG0480022555.01.T01

ATGATGGCTAGTATCAAACAAATAGAAAAGAAGAAGGCATGTGTGATAGGTGGCACTGGTTTTGTGGCATCATTGCTGATCAAGCAGTTGCTTGAAAAGGGTTATGCTGTTAATACTACTGTTAGAGACCCAGATAGTGCAAACAAAACATCTCACCTCATAGCACTGCAAAGTTTGGGAGAACTGAATCTATTTAAAGCAGAATTAACAGTTGAAGAAGGTTTTGATGCTCCTATAGCAGGATGTGAACTTGTCTTCCAACTTGCTACACCTGTGAACTTTGCCTCTCAAGATCCCGAGAATGACATGATAAAACCAGCAATCAAAGGTGTATTGAATGTCTTGAAAGCATGTGCAAGAGCAAAAGAAGTCAGAAGAGTTATCTTAACATCTTCAGCAGCTGCTGTGACTATAAACGAACTCGAAGGGACTGGTCATATTATGGATGAAACCAACTGGTCTGATGTTGAGTTTTTGAACACTGCAAAGCCACCCACTTGGTTTAAAATTGAATACATGGTTATGGTTAAGATTTCAAATAAGGGTTATCCTGTCTCAAAAGTGCTAGCTGAAAAGGCTGCATGGAAATTTGCCGAAGAAAATAACATTGATCTAATCACTGTGATACCTACTCTAACAATTGGTCCTTCTCTAACACAAGATATCCCATCTAGTGTTTCCATGGGAATGTCACTTCTAACAGGCAATGATTTCCTCATAAATGCTTTGAAAGGAATGCAGATCCTGTCAGGTTCGATATCCATCACTCATGTCGAGGATATTTGCCGAGCTCATATATTTGTAGCAGAAAAAGAATCAGCTTCTGGTCGATATATTTGTTGTGCTCACAATACTAGTGTTCCTGAGCTTGCTAAGTTTCTCAGCAAACGATACTCTCAGTATAAAGTTCCAACTGAATTTGATGATTGCTCCAGCAAGGCAAAGTTGATAATCTCTTCTGAAAAGCTTATCAAAGAAGGGTTCAGTTTCAAGCATGGTATTGCTGAAACTTTTGACCAAACTCTGGAGTATTTGAAGACTCAGGGGGCCTTGAAGAAGTAG

Protein sequence

>MsG0480022555.01.T01

MMASIKQIEKKKACVIGGTGFVASLLIKQLLEKGYAVNTTVRDPDSANKTSHLIALQSLGELNLFKAELTVEEGFDAPIAGCELVFQLATPVNFASQDPENDMIKPAIKGVLNVLKACARAKEVRRVILTSSAAAVTINELEGTGHIMDETNWSDVEFLNTAKPPTWFKIEYMVMVKISNKGYPVSKVLAEKAAWKFAEENNIDLITVIPTLTIGPSLTQDIPSSVSMGMSLLTGNDFLINALKGMQILSGSISITHVEDICRAHIFVAEKESASGRYICCAHNTSVPELAKFLSKRYSQYKVPTEFDDCSSKAKLIISSEKLIKEGFSFKHGIAETFDQTLEYLKTQGALKK*