AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039576.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039576.01.T01 MTR_7g074710 98.773 326 4 0 1 326 1 326 0.0 662
MsG0780039576.01.T01 MTR_7g074880 69.632 326 99 0 1 326 1 326 1.06e-174 487
MsG0780039576.01.T01 MTR_7g074850 67.173 329 105 1 1 326 1 329 9.11e-170 474
MsG0780039576.01.T01 MTR_7g074730 66.159 328 109 1 1 326 1 328 1.23e-166 467
MsG0780039576.01.T01 MTR_7g074820 65.957 329 109 1 1 326 1 329 7.79e-166 465
MsG0780039576.01.T01 MTR_7g074870 65.385 286 99 0 41 326 3 288 2.13e-140 399
MsG0780039576.01.T01 MTR_4g023730 48.328 329 167 3 1 326 1 329 1.01e-105 312
MsG0780039576.01.T01 MTR_1g022440 43.385 325 171 4 8 326 8 325 2.89e-94 283
MsG0780039576.01.T01 MTR_1g022445 44.000 325 169 4 8 326 8 325 4.54e-93 280
MsG0780039576.01.T01 MTR_4g092080 38.485 330 189 5 5 324 11 336 5.92e-75 234
MsG0780039576.01.T01 MTR_4g081440 35.000 340 195 7 6 326 22 354 4.79e-69 219
MsG0780039576.01.T01 MTR_4g081440 34.412 340 196 7 6 326 18 349 2.05e-68 218
MsG0780039576.01.T01 MTR_2g101330 38.957 326 183 8 7 326 4 319 5.03e-63 203
MsG0780039576.01.T01 MTR_8g062440 36.254 331 191 8 4 326 3 321 2.51e-59 193
MsG0780039576.01.T01 MTR_8g062440 35.650 331 194 7 4 326 3 322 5.50e-58 190
MsG0780039576.01.T01 MTR_8g062110 36.170 329 194 8 1 323 1 319 2.31e-57 188
MsG0780039576.01.T01 MTR_8g062110 36.170 329 194 8 1 323 10 328 2.71e-57 188
MsG0780039576.01.T01 MTR_8g062440 39.643 280 153 6 4 276 3 273 4.17e-57 187
MsG0780039576.01.T01 MTR_8g062110 38.929 280 161 5 1 276 1 274 1.02e-56 185
MsG0780039576.01.T01 MTR_4g077130 38.489 278 162 5 2 276 4 275 1.03e-56 187
MsG0780039576.01.T01 MTR_8g062110 38.929 280 161 5 1 276 1 274 1.09e-56 185
MsG0780039576.01.T01 MTR_5g056600 33.956 321 203 6 9 326 5 319 2.64e-54 180
MsG0780039576.01.T01 MTR_3g005210 36.765 272 164 4 8 276 6 272 5.91e-54 179
MsG0780039576.01.T01 MTR_2g013230 33.815 346 203 9 1 326 1 340 1.57e-53 179
MsG0780039576.01.T01 MTR_4g077100 36.429 280 169 5 1 276 3 277 1.72e-53 177
MsG0780039576.01.T01 MTR_4g077100 36.429 280 169 5 1 276 3 277 6.36e-53 177
MsG0780039576.01.T01 MTR_3g005170 37.132 272 163 5 8 276 10 276 9.69e-53 175
MsG0780039576.01.T01 MTR_3g005170 37.132 272 163 5 8 276 10 276 2.59e-52 175
MsG0780039576.01.T01 MTR_3g031650 33.851 322 203 7 8 326 5 319 3.35e-51 172
MsG0780039576.01.T01 MTR_5g072620 34.783 322 200 7 8 326 5 319 1.31e-48 166
MsG0780039576.01.T01 MTR_2g013250 31.195 343 208 7 3 324 2 337 6.08e-48 164
MsG0780039576.01.T01 MTR_3g031650 35.294 272 168 5 8 276 5 271 6.18e-46 157
MsG0780039576.01.T01 MTR_2g013260 31.792 346 206 11 1 324 1 338 9.17e-45 156
MsG0780039576.01.T01 MTR_7g117190 32.362 343 209 10 3 326 2 340 1.05e-44 156
MsG0780039576.01.T01 MTR_2g104960 34.056 323 196 13 8 326 20 329 1.19e-42 150
MsG0780039576.01.T01 MTR_4g009040 32.716 324 202 11 7 326 12 323 1.20e-42 150
MsG0780039576.01.T01 MTR_4g006940 32.515 326 205 11 4 326 13 326 1.47e-42 150
MsG0780039576.01.T01 MTR_4g009040 32.012 328 203 11 7 326 12 327 5.86e-41 145
MsG0780039576.01.T01 MTR_2g028620 32.219 329 201 11 8 326 10 326 2.40e-39 141
MsG0780039576.01.T01 MTR_4g006940 34.173 278 169 10 4 278 13 279 9.82e-39 139
MsG0780039576.01.T01 MTR_4g006940 34.173 278 169 10 4 278 13 279 9.82e-39 139
MsG0780039576.01.T01 MTR_7g117190 33.106 293 176 9 3 276 2 293 1.09e-38 139
MsG0780039576.01.T01 MTR_2g013260 32.881 295 177 7 1 276 1 293 5.67e-38 137
MsG0780039576.01.T01 MTR_4g009690 32.927 328 196 11 7 326 12 323 9.44e-38 137
MsG0780039576.01.T01 MTR_4g009690 32.817 323 202 10 7 326 12 322 1.53e-37 137
MsG0780039576.01.T01 MTR_3g005170 32.353 272 145 6 8 276 10 245 1.20e-36 133
MsG0780039576.01.T01 MTR_2g028620 33.453 278 167 8 8 276 10 278 4.31e-36 132
MsG0780039576.01.T01 MTR_2g013230 30.769 247 146 8 100 326 9 250 1.66e-24 100
MsG0780039576.01.T01 MTR_0164s0070 40.625 128 74 2 7 133 4 130 4.99e-24 97.8
MsG0780039576.01.T01 MTR_8g062110 32.143 224 138 6 105 323 19 233 1.81e-23 97.1
MsG0780039576.01.T01 MTR_8g062110 35.429 175 105 3 105 276 19 188 7.18e-23 94.4
MsG0780039576.01.T01 MTR_5g029990 26.866 268 172 6 8 270 12 260 7.82e-23 96.7
MsG0780039576.01.T01 MTR_6g406250 26.909 275 181 7 4 268 51 315 2.35e-20 90.9
MsG0780039576.01.T01 MTR_7g117190 31.169 231 137 9 115 326 3 230 3.36e-19 85.1
MsG0780039576.01.T01 MTR_7g074865 82.500 40 7 0 1 40 1 40 3.32e-18 78.2
MsG0780039576.01.T01 MTR_6g406250 28.910 211 135 5 4 206 51 254 3.94e-18 83.2
MsG0780039576.01.T01 MTR_3g101500 27.668 253 150 9 7 251 3 230 6.00e-16 77.4
MsG0780039576.01.T01 MTR_3g101500 27.668 253 150 9 7 251 3 230 6.36e-16 77.8
MsG0780039576.01.T01 MTR_2g013260 27.935 247 149 10 100 324 28 267 9.75e-16 76.6
MsG0780039576.01.T01 MTR_3g101500 28.421 190 116 6 7 196 3 172 2.39e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039576.01.T01 AT2G45400 48.171 328 162 5 6 326 38 364 5.19e-103 306
MsG0780039576.01.T01 AT5G42800 43.675 332 174 5 1 326 1 325 9.17e-92 278
MsG0780039576.01.T01 AT2G45400 48.582 282 138 4 6 280 38 319 4.55e-89 270
MsG0780039576.01.T01 AT2G45400 47.241 290 146 4 43 326 19 307 1.31e-86 263
MsG0780039576.01.T01 AT1G61720 39.104 335 186 8 4 326 9 337 1.07e-77 241
MsG0780039576.01.T01 AT4G35420 41.818 330 179 8 1 326 1 321 8.57e-75 233
MsG0780039576.01.T01 AT2G45400 50.691 217 101 3 6 216 38 254 2.51e-69 217
MsG0780039576.01.T01 AT1G09510 37.730 326 193 6 1 323 1 319 9.34e-57 187
MsG0780039576.01.T01 AT2G02400 36.086 327 195 8 4 326 2 318 2.66e-56 185
MsG0780039576.01.T01 AT4G27250 31.875 320 201 5 9 317 14 327 1.43e-55 184
MsG0780039576.01.T01 AT1G09480 36.778 329 198 7 1 326 1 322 4.45e-54 180
MsG0780039576.01.T01 AT4G27250 31.098 328 203 5 9 317 14 337 4.54e-54 181
MsG0780039576.01.T01 AT1G51410 34.242 330 203 7 2 326 3 323 6.43e-54 179
MsG0780039576.01.T01 AT5G19440 35.061 328 198 7 4 325 5 323 1.08e-53 179
MsG0780039576.01.T01 AT1G09480 36.778 329 198 7 1 326 48 369 1.14e-53 180
MsG0780039576.01.T01 AT1G09490 36.170 329 200 7 1 326 1 322 1.14e-53 179
MsG0780039576.01.T01 AT1G66800 35.185 324 201 8 4 326 3 318 1.27e-53 178
MsG0780039576.01.T01 AT1G68540 34.472 322 200 7 10 326 6 321 3.98e-51 172
MsG0780039576.01.T01 AT5G58490 34.985 323 198 8 8 326 9 323 8.52e-51 171
MsG0780039576.01.T01 AT1G09500 36.786 280 168 5 1 276 1 275 1.49e-49 167
MsG0780039576.01.T01 AT1G25460 34.579 321 199 6 10 326 6 319 1.59e-49 168
MsG0780039576.01.T01 AT1G09500 36.491 285 172 5 1 281 1 280 4.60e-49 167
MsG0780039576.01.T01 AT2G33590 35.714 322 184 12 5 318 6 312 2.76e-44 154
MsG0780039576.01.T01 AT1G15950 34.268 321 198 9 8 326 13 322 9.25e-44 154
MsG0780039576.01.T01 AT1G15950 34.268 321 198 9 8 326 13 322 9.25e-44 154
MsG0780039576.01.T01 AT1G76470 33.333 315 203 5 5 317 4 313 3.69e-43 151
MsG0780039576.01.T01 AT1G80820 34.049 326 192 12 8 326 8 317 2.78e-42 149
MsG0780039576.01.T01 AT2G33600 36.646 322 181 11 5 318 6 312 4.10e-42 149
MsG0780039576.01.T01 AT1G15950 34.304 309 191 8 8 314 13 311 6.80e-42 148
MsG0780039576.01.T01 AT1G15950 35.897 273 163 8 8 278 13 275 1.45e-38 138
MsG0780039576.01.T01 AT1G15950 35.897 273 163 8 8 278 13 275 2.17e-38 138
MsG0780039576.01.T01 AT1G09490 33.559 295 187 6 35 326 3 291 2.27e-38 138
MsG0780039576.01.T01 AT1G15950 35.897 273 163 8 8 278 13 275 2.65e-38 138
MsG0780039576.01.T01 AT1G80820 35.612 278 157 11 8 278 8 270 2.79e-37 134
MsG0780039576.01.T01 AT1G09500 34.855 241 149 5 40 276 5 241 3.48e-33 124
MsG0780039576.01.T01 AT5G14700 30.479 292 168 10 4 276 51 326 3.24e-25 104
MsG0780039576.01.T01 AT1G68540 31.050 219 142 5 112 326 1 214 1.52e-24 99.4
MsG0780039576.01.T01 AT2G23910 28.339 307 193 10 9 303 11 302 2.08e-24 101
MsG0780039576.01.T01 AT2G23910 28.044 271 177 8 9 272 11 270 1.01e-21 93.2
MsG0780039576.01.T01 AT2G23910 28.044 271 177 8 9 272 11 270 1.02e-21 93.2
MsG0780039576.01.T01 AT5G14700 32.195 205 120 6 4 196 51 248 5.82e-21 91.3
MsG0780039576.01.T01 AT4G30470 27.244 312 187 12 9 302 11 300 3.11e-19 87.0
MsG0780039576.01.T01 AT1G15950 30.357 224 149 5 105 326 6 224 3.97e-17 80.1
MsG0780039576.01.T01 AT2G23910 26.966 267 169 9 49 303 16 268 1.39e-15 75.9
MsG0780039576.01.T01 AT4G33360 27.778 252 151 9 7 251 2 229 4.22e-15 75.5
MsG0780039576.01.T01 AT4G33360 27.778 252 151 9 7 251 14 241 4.39e-15 75.1
MsG0780039576.01.T01 AT4G33360 27.778 252 151 9 7 251 14 241 5.55e-15 75.1

Find 67 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTGATATTCTGGATATT+TGG 0.178162 7:+66077946 None:intergenic
GAGAAAGCTGTTCTTGAATT+TGG 0.206019 7:-66078508 MsG0780039576.01.T01:CDS
ACTGTTAGTATTTGATATTC+TGG 0.207664 7:+66077938 None:intergenic
CTTGAATTTGGTGAACAAAA+TGG 0.220583 7:-66078496 MsG0780039576.01.T01:CDS
ACAAAACGACCAACAATAAA+AGG 0.257121 7:+66078448 None:intergenic
ATCAAGAGTCTCCTTGAAAA+TGG 0.290608 7:-66079630 MsG0780039576.01.T01:CDS
GATGAGTTGAAGGAAATTAA+AGG 0.307837 7:-66077914 MsG0780039576.01.T01:CDS
TATTGAGAAGGCTCTTGTTT+TGG 0.324795 7:-66078404 MsG0780039576.01.T01:CDS
GGTTCTGCTGTTTCATTCAA+TGG 0.327787 7:-66078634 MsG0780039576.01.T01:CDS
ATTGCTGCAGCGAAACTGTC+TGG 0.328131 7:+66078817 None:intergenic
AGTTTCTTCGTGTTTAAATC+TGG 0.331608 7:+66077881 None:intergenic
CTTAGAAGTGTTAAACCATT+TGG 0.332594 7:-66078562 MsG0780039576.01.T01:CDS
AGAACCGTCGATGGCGCATT+AGG 0.342006 7:-66078715 MsG0780039576.01.T01:CDS
AATAGTAGAGGTTGAGGAAA+AGG 0.351033 7:-66079749 MsG0780039576.01.T01:five_prime_UTR
TTATGCTGTTTCTAAGACTT+TGG 0.354833 7:-66078533 MsG0780039576.01.T01:CDS
AAAGGAAGAGTATGTGTAAC+TGG 0.362480 7:-66079681 MsG0780039576.01.T01:CDS
TCAATAGAATCAGGAAGCTT+AGG 0.377093 7:+66078421 None:intergenic
TTGAATTTGGTGAACAAAAT+GGG 0.381597 7:-66078495 MsG0780039576.01.T01:CDS
CTGCTTGAGAATTCTGTTCC+AGG 0.394830 7:-66078031 MsG0780039576.01.T01:CDS
CATTAGCCATCATTGATCTT+AGG 0.400690 7:+66077705 None:intergenic
TGACATTAACAGAACGTAAG+AGG 0.420276 7:-66078912 MsG0780039576.01.T01:intron
TCACTCACGGCGAAGTCAAT+TGG 0.434477 7:+66078760 None:intergenic
AGTTGAGACATCTCTTCAAT+AGG 0.440279 7:+66077977 None:intergenic
CAATAGAATCAGGAAGCTTA+GGG 0.444039 7:+66078422 None:intergenic
AGAGCCTTCTCAATAGAATC+AGG 0.454202 7:+66078412 None:intergenic
ACTAACAGTAGATGAGTTGA+AGG 0.472358 7:-66077924 MsG0780039576.01.T01:CDS
ATGTGTTGGATGAGAGTGAT+TGG 0.477053 7:-66078600 MsG0780039576.01.T01:CDS
ACAGCATAATTCCAACCAAA+TGG 0.484910 7:+66078547 None:intergenic
ACTGTCTGGGTTGCTTAGAT+CGG 0.487171 7:+66078831 None:intergenic
GAAGTGTTAAACCATTTGGT+TGG 0.489175 7:-66078558 MsG0780039576.01.T01:CDS
ATGCACCGGGTAGATTTGTC+AGG 0.495956 7:+66078878 None:intergenic
GTCCAAATGGCTGAAGGAAA+AGG 0.516695 7:-66079699 MsG0780039576.01.T01:exon
AAAGTTAATAGTAGAGGTTG+AGG 0.520504 7:-66079755 MsG0780039576.01.T01:five_prime_UTR
TCTTCAATAGGTACAATGAA+TGG 0.521628 7:+66077989 None:intergenic
CAGCAATCAAAGGATGTGTC+GGG 0.524506 7:-66078801 MsG0780039576.01.T01:CDS
GAGCAATTGTATCTACCTCC+TGG 0.524842 7:+66078013 None:intergenic
ATTCAATGTTGCAAGGAGAA+AGG 0.530160 7:-66077803 MsG0780039576.01.T01:CDS
AGTATGTGTAACTGGAGGTA+CGG 0.533565 7:-66079673 MsG0780039576.01.T01:CDS
ACCTGGATCAGCTCTAATAG+TGG 0.533677 7:+66079593 None:intergenic
GCTTCCTGATTCTATTGAGA+AGG 0.537211 7:-66078416 MsG0780039576.01.T01:CDS
TTGCTGCAGCGAAACTGTCT+GGG 0.539457 7:+66078818 None:intergenic
ACGAAGAAACTCGTGGATGC+TGG 0.539479 7:-66077869 MsG0780039576.01.T01:CDS
TATTTCTTCTGGTTCACTCA+CGG 0.542470 7:+66078747 None:intergenic
AATGTGCCTAAGATCAATGA+TGG 0.549030 7:-66077711 MsG0780039576.01.T01:three_prime_UTR
TGGAAAAGACAATGATGTGT+TGG 0.554067 7:-66078614 MsG0780039576.01.T01:CDS
TGAAGGAAATTAAAGGTGCA+AGG 0.554380 7:-66077907 MsG0780039576.01.T01:CDS
ACCACTATTAGAGCTGATCC+AGG 0.558931 7:-66079594 MsG0780039576.01.T01:intron
GCAGCAATCAAAGGATGTGT+CGG 0.561014 7:-66078802 MsG0780039576.01.T01:CDS
AATGCCTAATGCGCCATCGA+CGG 0.565238 7:+66078711 None:intergenic
GACATTAACAGAACGTAAGA+GGG 0.566904 7:-66078911 MsG0780039576.01.T01:intron
CAGAACAAAGTTAATAGTAG+AGG 0.567084 7:-66079761 MsG0780039576.01.T01:five_prime_UTR
TTTCCACATGGTACATGTTG+AGG 0.569682 7:-66078077 MsG0780039576.01.T01:CDS
GTATGTGTAACTGGAGGTAC+GGG 0.572789 7:-66079672 MsG0780039576.01.T01:CDS
CATGGTACATGTTGAGGATG+TGG 0.574986 7:-66078071 MsG0780039576.01.T01:CDS
AGTTTCGCTGCAGCAATCAA+AGG 0.584297 7:-66078811 MsG0780039576.01.T01:CDS
AAGAGTGTCCAAATGGCTGA+AGG 0.588094 7:-66079705 MsG0780039576.01.T01:exon
AGGTTTATATACACTTCAAG+TGG 0.594598 7:-66078655 MsG0780039576.01.T01:CDS
GGCGAAGTCAATTGGTGAAG+CGG 0.597111 7:+66078768 None:intergenic
TGGTGTGACACGTTTCCACA+TGG 0.600639 7:-66078089 MsG0780039576.01.T01:CDS
TGAATTCAAAGACAGTGAAG+AGG 0.602314 7:-66078675 MsG0780039576.01.T01:CDS
CGATGCAATTCAATGTTGCA+AGG 0.602642 7:-66077810 MsG0780039576.01.T01:CDS
AGTCAATTGGTGAAGCGGTG+TGG 0.629454 7:+66078773 None:intergenic
AGCTTCCTGACAAATCTACC+CGG 0.636776 7:-66078883 MsG0780039576.01.T01:CDS
TTTAAACACGAAGAAACTCG+TGG 0.659776 7:-66077876 MsG0780039576.01.T01:CDS
CTTGAGAATTCTGTTCCAGG+AGG 0.688166 7:-66078028 MsG0780039576.01.T01:CDS
GGAAGAGTATGTGTAACTGG+AGG 0.698516 7:-66079678 MsG0780039576.01.T01:CDS
CATCCTCAACATGTACCATG+TGG 0.710484 7:+66078074 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTGAAAATATTAAAATAAAA+AGG + Chr7:66077828-66077847 None:intergenic 10.0%
!! AATTAACTATATTGTGTGTT+TGG - Chr7:66077864-66077883 MsG0780039576.01.T01:CDS 20.0%
!! GTATATAGAAACAACTATAA+AGG + Chr7:66077998-66078017 None:intergenic 20.0%
!! TATTTGATATTCTGGATATT+TGG + Chr7:66079441-66079460 None:intergenic 20.0%
!! TGAATTTGACAAGATTATAA+TGG + Chr7:66078132-66078151 None:intergenic 20.0%
!!! ACATCAATTTATTTTCACTT+AGG + Chr7:66079255-66079274 None:intergenic 20.0%
! AAATTCACAGTAATTCTGTT+AGG - Chr7:66078145-66078164 MsG0780039576.01.T01:intron 25.0%
! AATTGTGGTAAAAACTTCTT+TGG - Chr7:66078085-66078104 MsG0780039576.01.T01:CDS 25.0%
! ACTGTTAGTATTTGATATTC+TGG + Chr7:66079449-66079468 None:intergenic 25.0%
! GAAAAAACATGAGTAGAATA+AGG + Chr7:66079026-66079045 None:intergenic 25.0%
! GGAAATTATAAGCATTTGTT+TGG + Chr7:66078444-66078463 None:intergenic 25.0%
! TCTGTTAATGTCAAAAACAT+AGG + Chr7:66078465-66078484 None:intergenic 25.0%
!! AGAAGTTTTTACCACAATTA+CGG + Chr7:66078084-66078103 None:intergenic 25.0%
!! GTCAATTTAAAACCTAAACT+CGG - Chr7:66079167-66079186 MsG0780039576.01.T01:intron 25.0%
!! TTGAATTTGGTGAACAAAAT+GGG - Chr7:66078889-66078908 MsG0780039576.01.T01:CDS 25.0%
!! TTGATTCTTCCTTTTATTGT+TGG - Chr7:66078927-66078946 MsG0780039576.01.T01:intron 25.0%
AAAAGGGTAATAAATTCACC+TGG + Chr7:66077811-66077830 None:intergenic 30.0%
AAAGTTAATAGTAGAGGTTG+AGG - Chr7:66077629-66077648 MsG0780039576.01.T01:three_prime_UTR 30.0%
ACAAAACGACCAACAATAAA+AGG + Chr7:66078939-66078958 None:intergenic 30.0%
AGGTTTATATACACTTCAAG+TGG - Chr7:66078729-66078748 MsG0780039576.01.T01:CDS 30.0%
AGTTTCTTCGTGTTTAAATC+TGG + Chr7:66079506-66079525 None:intergenic 30.0%
CAGAACAAAGTTAATAGTAG+AGG - Chr7:66077623-66077642 MsG0780039576.01.T01:three_prime_UTR 30.0%
CATATACAATTAGAGTCGTT+GGG + Chr7:66079214-66079233 None:intergenic 30.0%
GTGAAAATAAATTGATGTGC+AGG - Chr7:66079257-66079276 MsG0780039576.01.T01:intron 30.0%
TCTTCAATAGGTACAATGAA+TGG + Chr7:66079398-66079417 None:intergenic 30.0%
TTCACAAATAGAGTAAAACC+TGG + Chr7:66077945-66077964 None:intergenic 30.0%
! ATGAGATCGTTGATAAAGAT+TGG - Chr7:66079119-66079138 MsG0780039576.01.T01:intron 30.0%
! CTTGAATTTGGTGAACAAAA+TGG - Chr7:66078888-66078907 MsG0780039576.01.T01:CDS 30.0%
! GATGAGTTGAAGGAAATTAA+AGG - Chr7:66079470-66079489 MsG0780039576.01.T01:intron 30.0%
! GGTTTTACTCTATTTGTGAA+TGG - Chr7:66077945-66077964 MsG0780039576.01.T01:CDS 30.0%
! GTTGAAGAAATGTAGCTTTT+CGG + Chr7:66078532-66078551 None:intergenic 30.0%
! TTCCAAGTCGATAAACTTTT+TGG + Chr7:66078171-66078190 None:intergenic 30.0%
!! AATGGTCATTAGTCTTGATT+TGG - Chr7:66077963-66077982 MsG0780039576.01.T01:CDS 30.0%
!! ATGGTCATTAGTCTTGATTT+GGG - Chr7:66077964-66077983 MsG0780039576.01.T01:CDS 30.0%
!! CTTAGAAGTGTTAAACCATT+TGG - Chr7:66078822-66078841 MsG0780039576.01.T01:CDS 30.0%
!! CTTTTTGTCACTATTTCTTC+TGG + Chr7:66078651-66078670 None:intergenic 30.0%
!! TATATTGTGTGTTTGGTTTG+TGG - Chr7:66077871-66077890 MsG0780039576.01.T01:CDS 30.0%
!! TTATGCTGTTTCTAAGACTT+TGG - Chr7:66078851-66078870 MsG0780039576.01.T01:CDS 30.0%
!!! CATTTTTGTTTAACTTGACC+AGG - Chr7:66077924-66077943 MsG0780039576.01.T01:CDS 30.0%
AACGTTCATATTCCGAGTTT+AGG + Chr7:66079182-66079201 None:intergenic 35.0%
AATAGTAGAGGTTGAGGAAA+AGG - Chr7:66077635-66077654 MsG0780039576.01.T01:three_prime_UTR 35.0%
AATGTGCCTAAGATCAATGA+TGG - Chr7:66079673-66079692 MsG0780039576.01.T01:CDS 35.0%
ACAGCATAATTCCAACCAAA+TGG + Chr7:66078840-66078859 None:intergenic 35.0%
AGTTGAGACATCTCTTCAAT+AGG + Chr7:66079410-66079429 None:intergenic 35.0%
ATCAAGAGTCTCCTTGAAAA+TGG - Chr7:66077754-66077773 MsG0780039576.01.T01:three_prime_UTR 35.0%
ATTCAATGTTGCAAGGAGAA+AGG - Chr7:66079581-66079600 MsG0780039576.01.T01:intron 35.0%
CAATAGAATCAGGAAGCTTA+GGG + Chr7:66078965-66078984 None:intergenic 35.0%
CATTAGCCATCATTGATCTT+AGG + Chr7:66079682-66079701 None:intergenic 35.0%
CTCGTATATATCTGAGTTCA+CGG - Chr7:66078030-66078049 MsG0780039576.01.T01:CDS 35.0%
GACATTAACAGAACGTAAGA+GGG - Chr7:66078473-66078492 MsG0780039576.01.T01:CDS 35.0%
GAGAAAGCTGTTCTTGAATT+TGG - Chr7:66078876-66078895 MsG0780039576.01.T01:CDS 35.0%
GCAGGCAAAAAAGAACAAAT+TGG - Chr7:66079275-66079294 MsG0780039576.01.T01:intron 35.0%
GCATATACAATTAGAGTCGT+TGG + Chr7:66079215-66079234 None:intergenic 35.0%
TAGAGAAACTGCAAAGGATT+TGG - Chr7:66078291-66078310 MsG0780039576.01.T01:intron 35.0%
TCAATAGAATCAGGAAGCTT+AGG + Chr7:66078966-66078985 None:intergenic 35.0%
TGAATTCAAAGACAGTGAAG+AGG - Chr7:66078709-66078728 MsG0780039576.01.T01:CDS 35.0%
TGACATTAACAGAACGTAAG+AGG - Chr7:66078472-66078491 MsG0780039576.01.T01:CDS 35.0%
TGGAAAAGACAATGATGTGT+TGG - Chr7:66078770-66078789 MsG0780039576.01.T01:CDS 35.0%
TTTAAACACGAAGAAACTCG+TGG - Chr7:66079508-66079527 MsG0780039576.01.T01:intron 35.0%
! AAAGGAAGAGTATGTGTAAC+TGG - Chr7:66077703-66077722 MsG0780039576.01.T01:three_prime_UTR 35.0%
! ACTAACAGTAGATGAGTTGA+AGG - Chr7:66079460-66079479 MsG0780039576.01.T01:intron 35.0%
! GAAGTGTTAAACCATTTGGT+TGG - Chr7:66078826-66078845 MsG0780039576.01.T01:CDS 35.0%
! TGAAGGAAATTAAAGGTGCA+AGG - Chr7:66079477-66079496 MsG0780039576.01.T01:intron 35.0%
!! ACAGAAAAAGAGTGTCCAAA+TGG - Chr7:66077672-66077691 MsG0780039576.01.T01:three_prime_UTR 35.0%
!! GTGTTTGGTTTGTGGAATAT+GGG - Chr7:66077879-66077898 MsG0780039576.01.T01:CDS 35.0%
!! TATTGAGAAGGCTCTTGTTT+TGG - Chr7:66078980-66078999 MsG0780039576.01.T01:intron 35.0%
!! TATTTCTTCTGGTTCACTCA+CGG + Chr7:66078640-66078659 None:intergenic 35.0%
!! TGAATCCATCGACTGATTTT+AGG - Chr7:66078267-66078286 MsG0780039576.01.T01:intron 35.0%
!! TGACAGAGTATCCATTTTCA+AGG + Chr7:66077768-66077787 None:intergenic 35.0%
!! TGTGTTTGGTTTGTGGAATA+TGG - Chr7:66077878-66077897 MsG0780039576.01.T01:CDS 35.0%
!!! AAGGCTCTTGTTTTGGTATT+AGG - Chr7:66078987-66079006 MsG0780039576.01.T01:intron 35.0%
AGAGCCTTCTCAATAGAATC+AGG + Chr7:66078975-66078994 None:intergenic 40.0%
AGTATGTGTAACTGGAGGTA+CGG - Chr7:66077711-66077730 MsG0780039576.01.T01:three_prime_UTR 40.0%
ATGTGTTGGATGAGAGTGAT+TGG - Chr7:66078784-66078803 MsG0780039576.01.T01:CDS 40.0%
CGATGCAATTCAATGTTGCA+AGG - Chr7:66079574-66079593 MsG0780039576.01.T01:intron 40.0%
GCTTCCTGATTCTATTGAGA+AGG - Chr7:66078968-66078987 MsG0780039576.01.T01:intron 40.0%
TCTAGCCTAAAATCAGTCGA+TGG + Chr7:66078275-66078294 None:intergenic 40.0%
TTAGGCTAGAGAAACTGCAA+AGG - Chr7:66078285-66078304 MsG0780039576.01.T01:intron 40.0%
TTTCCACATGGTACATGTTG+AGG - Chr7:66079307-66079326 MsG0780039576.01.T01:intron 40.0%
! GGCCAAAAAGTTTATCGACT+TGG - Chr7:66078166-66078185 MsG0780039576.01.T01:intron 40.0%
! TTCCTTTTCCTTCAGCCATT+TGG + Chr7:66077690-66077709 None:intergenic 40.0%
!! CGACTTAGATTTAGCTTGAG+AGG + Chr7:66078203-66078222 None:intergenic 40.0%
!! GGTTCTGCTGTTTCATTCAA+TGG - Chr7:66078750-66078769 MsG0780039576.01.T01:CDS 40.0%
ACCACAATTACGGTGACATG+TGG + Chr7:66078074-66078093 None:intergenic 45.0%
ACCACATGTCACCGTAATTG+TGG - Chr7:66078070-66078089 MsG0780039576.01.T01:CDS 45.0%
ACCACTATTAGAGCTGATCC+AGG - Chr7:66077790-66077809 MsG0780039576.01.T01:exon 45.0%
ACTGTCTGGGTTGCTTAGAT+CGG + Chr7:66078556-66078575 None:intergenic 45.0%
AGCTTCCTGACAAATCTACC+CGG - Chr7:66078501-66078520 MsG0780039576.01.T01:CDS 45.0%
AGTTTCGCTGCAGCAATCAA+AGG - Chr7:66078573-66078592 MsG0780039576.01.T01:CDS 45.0%
CAGCAATCAAAGGATGTGTC+GGG - Chr7:66078583-66078602 MsG0780039576.01.T01:CDS 45.0%
CATCCTCAACATGTACCATG+TGG + Chr7:66079313-66079332 None:intergenic 45.0%
CATGGTACATGTTGAGGATG+TGG - Chr7:66079313-66079332 MsG0780039576.01.T01:intron 45.0%
CTGCTTGAGAATTCTGTTCC+AGG - Chr7:66079353-66079372 MsG0780039576.01.T01:intron 45.0%
CTTGAGAATTCTGTTCCAGG+AGG - Chr7:66079356-66079375 MsG0780039576.01.T01:intron 45.0%
GAGCAATTGTATCTACCTCC+TGG + Chr7:66079374-66079393 None:intergenic 45.0%
GCAGCAATCAAAGGATGTGT+CGG - Chr7:66078582-66078601 MsG0780039576.01.T01:CDS 45.0%
GTCCAAATGGCTGAAGGAAA+AGG - Chr7:66077685-66077704 MsG0780039576.01.T01:three_prime_UTR 45.0%
GTGACAAAAAGAACCGTCGA+TGG - Chr7:66078660-66078679 MsG0780039576.01.T01:CDS 45.0%
! ACCTGGATCAGCTCTAATAG+TGG + Chr7:66077794-66077813 None:intergenic 45.0%
! ATGTAGCTTTTCGGATGCAC+CGG + Chr7:66078523-66078542 None:intergenic 45.0%
! GGAAGAGTATGTGTAACTGG+AGG - Chr7:66077706-66077725 MsG0780039576.01.T01:three_prime_UTR 45.0%
! GTACGGGTTTTCTTGGTTCA+TGG - Chr7:66077728-66077747 MsG0780039576.01.T01:three_prime_UTR 45.0%
! GTATGTGTAACTGGAGGTAC+GGG - Chr7:66077712-66077731 MsG0780039576.01.T01:three_prime_UTR 45.0%
!! AAGAGTGTCCAAATGGCTGA+AGG - Chr7:66077679-66077698 MsG0780039576.01.T01:three_prime_UTR 45.0%
!! TGAAAATATTAAAATAAAAA+GGG + Chr7:66077827-66077846 None:intergenic 5.0%
AATGCCTAATGCGCCATCGA+CGG + Chr7:66078676-66078695 None:intergenic 50.0%
ACGAAGAAACTCGTGGATGC+TGG - Chr7:66079515-66079534 MsG0780039576.01.T01:intron 50.0%
AGTCAATTGGTGAAGCGGTG+TGG + Chr7:66078614-66078633 None:intergenic 50.0%
ATGCACCGGGTAGATTTGTC+AGG + Chr7:66078509-66078528 None:intergenic 50.0%
ATTGCTGCAGCGAAACTGTC+TGG + Chr7:66078570-66078589 None:intergenic 50.0%
GGCGAAGTCAATTGGTGAAG+CGG + Chr7:66078619-66078638 None:intergenic 50.0%
TCACTCACGGCGAAGTCAAT+TGG + Chr7:66078627-66078646 None:intergenic 50.0%
TGGTGTGACACGTTTCCACA+TGG - Chr7:66079295-66079314 MsG0780039576.01.T01:intron 50.0%
TTGCTGCAGCGAAACTGTCT+GGG + Chr7:66078569-66078588 None:intergenic 50.0%
! TGTAGCTTTTCGGATGCACC+GGG + Chr7:66078522-66078541 None:intergenic 50.0%
!! ACTGGAGGTACGGGTTTTCT+TGG - Chr7:66077721-66077740 MsG0780039576.01.T01:three_prime_UTR 50.0%
AGAACCGTCGATGGCGCATT+AGG - Chr7:66078669-66078688 MsG0780039576.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 66077620 66079786 66077620 ID=MsG0780039576.01;Name=MsG0780039576.01
Chr7 mRNA 66077620 66079786 66077620 ID=MsG0780039576.01.T01;Parent=MsG0780039576.01;Name=MsG0780039576.01.T01;_AED=0.23;_eAED=0.23;_QI=71|1|1|1|1|1|3|173|326
Chr7 exon 66077620 66078127 66077620 ID=MsG0780039576.01.T01:exon:8753;Parent=MsG0780039576.01.T01
Chr7 exon 66078398 66078922 66078398 ID=MsG0780039576.01.T01:exon:8752;Parent=MsG0780039576.01.T01
Chr7 exon 66079595 66079786 66079595 ID=MsG0780039576.01.T01:exon:8751;Parent=MsG0780039576.01.T01
Chr7 five_prime_UTR 66079716 66079786 66079716 ID=MsG0780039576.01.T01:five_prime_utr;Parent=MsG0780039576.01.T01
Chr7 CDS 66079595 66079715 66079595 ID=MsG0780039576.01.T01:cds;Parent=MsG0780039576.01.T01
Chr7 CDS 66078398 66078922 66078398 ID=MsG0780039576.01.T01:cds;Parent=MsG0780039576.01.T01
Chr7 CDS 66077793 66078127 66077793 ID=MsG0780039576.01.T01:cds;Parent=MsG0780039576.01.T01
Chr7 three_prime_UTR 66077620 66077792 66077620 ID=MsG0780039576.01.T01:three_prime_utr;Parent=MsG0780039576.01.T01
Gene Sequence

>MsG0780039576.01.T01

ATGGCTGAAGGAAAAGGAAGAGTATGTGTAACTGGAGGTACGGGTTTTCTTGGTTCATGGATCATCAAGAGTCTCCTTGAAAATGGATACTCTGTCAATACCACTATTAGAGCTGATCCAGAACGTAAGAGGGATGTTAGCTTCCTGACAAATCTACCCGGTGCATCCGAAAAGCTACATTTCTTCAACGCCGATCTAAGCAACCCAGACAGTTTCGCTGCAGCAATCAAAGGATGTGTCGGGATATTCCACACCGCTTCACCAATTGACTTCGCCGTGAGTGAACCAGAAGAAATAGTGACAAAAAGAACCGTCGATGGCGCATTAGGCATTTTAAAAGCATGTGTGAATTCAAAGACAGTGAAGAGGTTTATATACACTTCAAGTGGTTCTGCTGTTTCATTCAATGGAAAAGACAATGATGTGTTGGATGAGAGTGATTGGAGTGATGTTGATTTGCTTAGAAGTGTTAAACCATTTGGTTGGAATTATGCTGTTTCTAAGACTTTGGCTGAGAAAGCTGTTCTTGAATTTGGTGAACAAAATGGGATTGATGTTGTTACTTTGATTCTTCCTTTTATTGTTGGTCGTTTTGTTTGCCCTAAGCTTCCTGATTCTATTGAGAAGGCTCTTGTTTTGGTATTAGGCAAAAAAGAACAAATTGGTGTGACACGTTTCCACATGGTACATGTTGAGGATGTGGCTAGAGCACATATATATCTGCTTGAGAATTCTGTTCCAGGAGGTAGATACAATTGCTCACCATTCATTGTACCTATTGAAGAGATGTCTCAACTTCTTTCAGCCAAATATCCAGAATATCAAATACTAACAGTAGATGAGTTGAAGGAAATTAAAGGTGCAAGGTTACCAGATTTAAACACGAAGAAACTCGTGGATGCTGGTTTCGAATTTAAGTACACTATCGAAGATATGTTCGACGATGCAATTCAATGTTGCAAGGAGAAAGGCTATCTCTAA

Protein sequence

>MsG0780039576.01.T01

MAEGKGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIKGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDNDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVEDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFEFKYTIEDMFDDAIQCCKEKGYL*