AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022890.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022890.01.T01 MTR_5g019460 40.136 294 132 5 57 311 77 365 1.29e-67 216
MsG0480022890.01.T01 MTR_8g078070 37.966 295 135 7 58 311 79 366 7.12e-65 209
MsG0480022890.01.T01 MTR_5g092910 33.784 148 90 3 63 210 46 185 5.70e-21 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022890.01.T01 AT4G38460 57.045 291 87 3 55 317 42 322 3.02e-105 311
MsG0480022890.01.T01 AT4G36810 40.264 303 133 5 52 311 68 365 2.01e-72 228
MsG0480022890.01.T01 AT2G18620 36.261 353 169 9 11 315 1 345 6.63e-71 224
MsG0480022890.01.T01 AT2G18640 35.121 373 178 13 1 316 6 371 9.53e-62 201
MsG0480022890.01.T01 AT3G20160 39.716 282 143 9 53 315 41 314 1.11e-60 196
MsG0480022890.01.T01 AT2G23800 36.667 300 142 9 58 316 83 375 1.62e-57 190
MsG0480022890.01.T01 AT3G32040 38.305 295 137 5 58 311 64 354 8.70e-57 188
MsG0480022890.01.T01 AT3G29430 37.231 325 151 9 34 311 33 351 9.87e-57 187
MsG0480022890.01.T01 AT3G20160 36.688 308 144 9 53 315 41 342 1.16e-56 187
MsG0480022890.01.T01 AT3G14550 38.384 297 134 7 58 311 64 354 2.94e-56 186
MsG0480022890.01.T01 AT3G14550 38.384 297 134 7 58 311 64 354 2.94e-56 186
MsG0480022890.01.T01 AT3G14550 38.384 297 134 7 58 311 64 354 2.94e-56 186
MsG0480022890.01.T01 AT1G49530 37.049 305 137 9 62 315 34 334 3.82e-56 186
MsG0480022890.01.T01 AT3G14530 38.983 295 135 6 58 311 64 354 2.36e-55 184
MsG0480022890.01.T01 AT3G14510 38.267 277 122 6 78 311 8 278 7.26e-52 173

Find 107 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGTTATGTAGAGGTTTA+TGG 0.097267 4:+78144192 MsG0480022890.01.T01:CDS
TCTGATTAATCTGCCAAATT+AGG 0.105478 4:-78142927 None:intergenic
CGTATTGGACTTCCCTAATT+TGG 0.207587 4:+78142914 MsG0480022890.01.T01:CDS
TTGGATGGATTTGAGAAGTA+TGG 0.258489 4:+78144270 MsG0480022890.01.T01:CDS
AGCAAAGGCTTTGGAGGAAT+TGG 0.259488 4:+78144251 MsG0480022890.01.T01:CDS
CGGTGTTGACATGGCAATTC+TGG 0.263672 4:+78143796 MsG0480022890.01.T01:CDS
TGCTATTGTAGATGATATTT+TGG 0.266530 4:+78144122 MsG0480022890.01.T01:CDS
GGCTCCACTGGAATGGCTGC+AGG 0.305044 4:+78143932 MsG0480022890.01.T01:CDS
AGAGTTATGTAGAGGTTTAT+GGG 0.313757 4:+78144193 MsG0480022890.01.T01:CDS
CTGATTAATCTGCCAAATTA+GGG 0.317142 4:-78142926 None:intergenic
GGCTGCTCCTTCTCCTTCTT+CGG 0.326678 4:+78142852 MsG0480022890.01.T01:CDS
GGCATTGTCGCAATTGTAAA+AGG 0.335180 4:-78142766 None:intergenic
CGTAATTCACAAAACTATAG+AGG 0.352365 4:-78144308 None:intergenic
GGATAAGATTCGGAGACTTT+CGG 0.378999 4:-78142810 None:intergenic
TGCCATGTCAACACCGTAGA+TGG 0.385514 4:-78143789 None:intergenic
CCGTAGATGGCGTGGTTTGA+GGG 0.385791 4:-78143776 None:intergenic
CAAGCAGAGATACACATAAC+AGG 0.399894 4:-78143042 None:intergenic
TTCCCATCTTTATCTCCCTC+AGG 0.406329 4:-78144159 None:intergenic
ACTTTGATTTGAAGACGTAT+TGG 0.408292 4:+78142899 MsG0480022890.01.T01:CDS
ACACGAAGTACACGGGGTTC+AGG 0.414466 4:-78143884 None:intergenic
ATAGAGAGACTGAGGAGGTA+TGG 0.421597 4:+78144078 MsG0480022890.01.T01:CDS
AGAACTTAGAGCAAAGGCTT+TGG 0.423144 4:+78144242 MsG0480022890.01.T01:CDS
GCCCGCTGTGTGGGCTCCAC+TGG 0.424889 4:+78143920 MsG0480022890.01.T01:CDS
GAAAGAAGATTACCATTTCA+AGG 0.432327 4:-78143113 None:intergenic
GCAGCCATGGAGCAGCGAAT+TGG 0.434085 4:-78142835 None:intergenic
GGTGATGCACTCTTTCCCCT+TGG 0.434286 4:+78143821 MsG0480022890.01.T01:CDS
TGCAGTGTGTGGAGGGTTGT+TGG 0.437777 4:+78144036 MsG0480022890.01.T01:intron
AGATGGCGTGGTTTGAGGGC+TGG 0.460200 4:-78143772 None:intergenic
ACTTAGAGCAAAGGCTTTGG+AGG 0.466634 4:+78144245 MsG0480022890.01.T01:CDS
CGAATTGGAAGGATAAGATT+CGG 0.471835 4:-78142820 None:intergenic
TTGAGGGAACTGAACTTCAA+TGG 0.473114 4:-78142962 None:intergenic
CTGTGTGGGCTCCACTGGAA+TGG 0.474784 4:+78143925 MsG0480022890.01.T01:CDS
TCTCTCTATCTCATCATCTT+CGG 0.478860 4:-78144064 None:intergenic
CACTGCATGTGCCCTTGAAA+TGG 0.480852 4:+78143101 MsG0480022890.01.T01:CDS
CGGTATTCTGCCCTTGCTAA+AGG 0.483034 4:+78143003 MsG0480022890.01.T01:CDS
AAACCTGAGGGAGATAAAGA+TGG 0.484680 4:+78144156 MsG0480022890.01.T01:CDS
CAATGCCCTCATTAAACATC+GGG 0.486811 4:+78142782 MsG0480022890.01.T01:CDS
TCCAGTGGAGCCCACACAGC+GGG 0.487936 4:-78143921 None:intergenic
TTGACGAGGCCAGTAGATGA+TGG 0.492007 4:+78144352 MsG0480022890.01.T01:CDS
ACCGTAGATGGCGTGGTTTG+AGG 0.494704 4:-78143777 None:intergenic
CCCTCAAACCACGCCATCTA+CGG 0.495109 4:+78143776 MsG0480022890.01.T01:CDS
AGAAGGAGAAGGAGCAGCCA+TGG 0.495191 4:-78142848 None:intergenic
AGGAGGTATGGTAGAGCTGT+TGG 0.495677 4:+78144090 MsG0480022890.01.T01:CDS
CGTGGTTTGAGGGCTGGCCA+CGG 0.508134 4:-78143766 None:intergenic
CCTTCCAATTCGCTGCTCCA+TGG 0.517982 4:+78142831 MsG0480022890.01.T01:CDS
ATCGCTTAGCACCTTTAGCA+AGG 0.521626 4:-78143014 None:intergenic
CGCCATCTACGGTGTTGACA+TGG 0.522018 4:+78143787 MsG0480022890.01.T01:CDS
ATGATGAGATAGAGAGACTG+AGG 0.525344 4:+78144070 MsG0480022890.01.T01:CDS
TTCAAGAACCCATCATCTAC+TGG 0.527028 4:-78144361 None:intergenic
GCTCCACTGGAATGGCTGCA+GGG 0.527665 4:+78143933 MsG0480022890.01.T01:CDS
GTAATTCACAAAACTATAGA+GGG 0.531875 4:-78144307 None:intergenic
GGGCTGGCCACGGCGTGACA+AGG 0.532295 4:-78143756 None:intergenic
TGACAAGGAGTCATCCATGC+AGG 0.533253 4:-78143741 None:intergenic
ATAGCTTCATATATCTGTTG+AGG 0.536580 4:-78142979 None:intergenic
CAGAGGGAAGAGTTATGTAG+AGG 0.537549 4:+78144185 MsG0480022890.01.T01:CDS
GATCGGATGGAAACCGAAGA+AGG 0.542003 4:-78142865 None:intergenic
GAAACACCCGATGTTTAATG+AGG 0.542457 4:-78142788 None:intergenic
GAGTTATGTAGAGGTTTATG+GGG 0.542842 4:+78144194 MsG0480022890.01.T01:CDS
AACAATGTGTTGAAATCCAA+GGG 0.546111 4:-78143837 None:intergenic
CATTTCAAGGGCACATGCAG+TGG 0.547793 4:-78143100 None:intergenic
TAGCTTCATATATCTGTTGA+GGG 0.547993 4:-78142978 None:intergenic
AAGGCTTTGGAGGAATTGGA+TGG 0.548932 4:+78144255 MsG0480022890.01.T01:CDS
GAGTGTTCTGCAGTGTGTGG+AGG 0.552684 4:+78144028 MsG0480022890.01.T01:intron
AAGGGCACATGCAGTGGGGA+AGG 0.558957 4:-78143094 None:intergenic
AAAGAAGATTACCATTTCAA+GGG 0.560180 4:-78143112 None:intergenic
GTACACGGGGTTCAGGTACA+AGG 0.565661 4:-78143877 None:intergenic
ATCATCATGTATCAATGAAG+CGG 0.568247 4:-78143714 None:intergenic
ATGCAGTGGGGAAGGCAGCA+AGG 0.568393 4:-78143086 None:intergenic
AACCTGAGGGAGATAAAGAT+GGG 0.571753 4:+78144157 MsG0480022890.01.T01:CDS
ATGAGATAGAGAGACTGAGG+AGG 0.573192 4:+78144073 MsG0480022890.01.T01:CDS
ATTTCAAGGGCACATGCAGT+GGG 0.576737 4:-78143099 None:intergenic
CAGCAATGACACGAAGTACA+CGG 0.576879 4:-78143892 None:intergenic
AGTGTTCTGCAGTGTGTGGA+GGG 0.579045 4:+78144029 MsG0480022890.01.T01:intron
GGCTGAAGAACTTAGAGCAA+AGG 0.579804 4:+78144236 MsG0480022890.01.T01:CDS
CTGCCCTGCAGCCATTCCAG+TGG 0.580181 4:-78143936 None:intergenic
GCTGAGATAGCCCGCTGTGT+GGG 0.580286 4:+78143911 MsG0480022890.01.T01:CDS
AGCAATGACACGAAGTACAC+GGG 0.582072 4:-78143891 None:intergenic
GTTGACATGGCAATTCTGGC+GGG 0.592172 4:+78143800 MsG0480022890.01.T01:CDS
TCGCTTAGCACCTTTAGCAA+GGG 0.604739 4:-78143013 None:intergenic
CTATCTCATCATCTTCGGCA+CGG 0.604926 4:-78144059 None:intergenic
ACATGATGATCTTCCCTGCA+TGG 0.608437 4:+78143727 MsG0480022890.01.T01:CDS
ACAATGCCCTCATTAAACAT+CGG 0.612387 4:+78142781 MsG0480022890.01.T01:CDS
GGGTTCAGGTACAAGGTCAG+AGG 0.613058 4:-78143870 None:intergenic
CCATGGAGCAGCGAATTGGA+AGG 0.614799 4:-78142831 None:intergenic
ATGGAAACCGAAGAAGGAGA+AGG 0.615829 4:-78142859 None:intergenic
TGTTGACATGGCAATTCTGG+CGG 0.616197 4:+78143799 MsG0480022890.01.T01:CDS
AAACAATGTGTTGAAATCCA+AGG 0.617990 4:-78143838 None:intergenic
AAGCAGAGATACACATAACA+GGG 0.618552 4:-78143041 None:intergenic
GGAAGAGAGACTGAAACCTG+AGG 0.622933 4:+78144143 MsG0480022890.01.T01:CDS
GATGACTCCTTGTCACGCCG+TGG 0.624688 4:+78143749 MsG0480022890.01.T01:CDS
GACAAGGAGTCATCCATGCA+GGG 0.630249 4:-78143740 None:intergenic
TGCTGAGATAGCCCGCTGTG+TGG 0.636542 4:+78143910 MsG0480022890.01.T01:CDS
GAAGAGAGACTGAAACCTGA+GGG 0.638321 4:+78144144 MsG0480022890.01.T01:CDS
AAACACCCGATGTTTAATGA+GGG 0.640367 4:-78142787 None:intergenic
TGTCAACACCGTAGATGGCG+TGG 0.643803 4:-78143784 None:intergenic
GCAGAGATACACATAACAGG+GGG 0.650726 4:-78143039 None:intergenic
AGAGATACACATAACAGGGG+GGG 0.650807 4:-78143037 None:intergenic
TAGAAGTTTCAATGTTGACG+AGG 0.655023 4:+78144338 MsG0480022890.01.T01:CDS
GGTTCAGGTACAAGGTCAGA+GGG 0.665434 4:-78143869 None:intergenic
AACAGATATATGAAGCTATG+CGG 0.703508 4:+78142983 MsG0480022890.01.T01:CDS
TAATTCACAAAACTATAGAG+GGG 0.709745 4:-78144306 None:intergenic
AGCAGAGATACACATAACAG+GGG 0.710591 4:-78143040 None:intergenic
TTCCAGTGGAGCCCACACAG+CGG 0.722527 4:-78143922 None:intergenic
ACAATGTGTTGAAATCCAAG+GGG 0.726426 4:-78143836 None:intergenic
CAGAGATACACATAACAGGG+GGG 0.735594 4:-78143038 None:intergenic
TTTCAAGGGCACATGCAGTG+GGG 0.742785 4:-78143098 None:intergenic
GCAATGACACGAAGTACACG+GGG 0.769728 4:-78143890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACTCTATAAGAAAAAAA+AGG - Chr4:78142738-78142757 None:intergenic 15.0%
!! ACAATAGAATGAATATTAAG+TGG - Chr4:78143148-78143167 None:intergenic 20.0%
!! TTATGTTTGGTATTTCTTAT+TGG + Chr4:78143575-78143594 MsG0480022890.01.T01:intron 20.0%
!! TTGATACAAGATAAAAAGTT+TGG + Chr4:78143995-78144014 MsG0480022890.01.T01:intron 20.0%
!!! ATGATAAACTGTATGAATTT+TGG + Chr4:78143660-78143679 MsG0480022890.01.T01:intron 20.0%
!!! TTTTCTTATAGAGTTAAAGA+TGG + Chr4:78142741-78142760 MsG0480022890.01.T01:CDS 20.0%
! AAAGAAGATTACCATTTCAA+GGG - Chr4:78143115-78143134 None:intergenic 25.0%
! AATATTCAGAGACACATTTA+AGG - Chr4:78143556-78143575 None:intergenic 25.0%
! AATCAAAATTGGAAAGAGAA+AGG - Chr4:78143343-78143362 None:intergenic 25.0%
! GATAGATAAAAGTAAAACTC+TGG - Chr4:78143260-78143279 None:intergenic 25.0%
! GTAATTCACAAAACTATAGA+GGG - Chr4:78144310-78144329 None:intergenic 25.0%
! TAATTCACAAAACTATAGAG+GGG - Chr4:78144309-78144328 None:intergenic 25.0%
! TGTCTCTGAATATTTATGTT+TGG + Chr4:78143562-78143581 MsG0480022890.01.T01:intron 25.0%
!! AGATAAAAAGTTTGGTGAAA+TGG + Chr4:78144003-78144022 MsG0480022890.01.T01:intron 25.0%
!! TGCTATTGTAGATGATATTT+TGG + Chr4:78144122-78144141 MsG0480022890.01.T01:CDS 25.0%
!!! ATAGTACATACTTTGACTTT+TGG + Chr4:78143501-78143520 MsG0480022890.01.T01:intron 25.0%
AAACAATGTGTTGAAATCCA+AGG - Chr4:78143841-78143860 None:intergenic 30.0%
AACAATGTGTTGAAATCCAA+GGG - Chr4:78143840-78143859 None:intergenic 30.0%
AACAGATATATGAAGCTATG+CGG + Chr4:78142983-78143002 MsG0480022890.01.T01:CDS 30.0%
AAGAGTTATGTAGAGGTTTA+TGG + Chr4:78144192-78144211 MsG0480022890.01.T01:CDS 30.0%
AGAGTTATGTAGAGGTTTAT+GGG + Chr4:78144193-78144212 MsG0480022890.01.T01:CDS 30.0%
ATAAAGATGGGAAAAACAGA+GGG + Chr4:78144169-78144188 MsG0480022890.01.T01:CDS 30.0%
ATAGCTTCATATATCTGTTG+AGG - Chr4:78142982-78143001 None:intergenic 30.0%
ATCATCATGTATCAATGAAG+CGG - Chr4:78143717-78143736 None:intergenic 30.0%
CAGATACAACTAGCTAAAAA+TGG - Chr4:78143475-78143494 None:intergenic 30.0%
CGTAATTCACAAAACTATAG+AGG - Chr4:78144311-78144330 None:intergenic 30.0%
CTGATTAATCTGCCAAATTA+GGG - Chr4:78142929-78142948 None:intergenic 30.0%
GAAAGAAGATTACCATTTCA+AGG - Chr4:78143116-78143135 None:intergenic 30.0%
TAGCTTCATATATCTGTTGA+GGG - Chr4:78142981-78143000 None:intergenic 30.0%
TCTGATTAATCTGCCAAATT+AGG - Chr4:78142930-78142949 None:intergenic 30.0%
! TAAAAAGTTTGGTGAAATGG+CGG + Chr4:78144006-78144025 MsG0480022890.01.T01:intron 30.0%
!! ACTTTGATTTGAAGACGTAT+TGG + Chr4:78142899-78142918 MsG0480022890.01.T01:CDS 30.0%
!!! CTTATATTTTAGTTGCAAGC+AGG + Chr4:78143685-78143704 MsG0480022890.01.T01:intron 30.0%
AAACACCCGATGTTTAATGA+GGG - Chr4:78142790-78142809 None:intergenic 35.0%
AAGCAGAGATACACATAACA+GGG - Chr4:78143044-78143063 None:intergenic 35.0%
ACAATGCCCTCATTAAACAT+CGG + Chr4:78142781-78142800 MsG0480022890.01.T01:CDS 35.0%
ACAATGTGTTGAAATCCAAG+GGG - Chr4:78143839-78143858 None:intergenic 35.0%
CGAATTGGAAGGATAAGATT+CGG - Chr4:78142823-78142842 None:intergenic 35.0%
GAGTTATGTAGAGGTTTATG+GGG + Chr4:78144194-78144213 MsG0480022890.01.T01:CDS 35.0%
GATAAAGATGGGAAAAACAG+AGG + Chr4:78144168-78144187 MsG0480022890.01.T01:CDS 35.0%
GTATCAATCCAACTGCATTT+GGG - Chr4:78143982-78144001 None:intergenic 35.0%
TAGAAGTTTCAATGTTGACG+AGG + Chr4:78144338-78144357 MsG0480022890.01.T01:CDS 35.0%
TCTCTCTATCTCATCATCTT+CGG - Chr4:78144067-78144086 None:intergenic 35.0%
TGTATCAATCCAACTGCATT+TGG - Chr4:78143983-78144002 None:intergenic 35.0%
! ATCTCTGCTTGTGAACTTTT+CGG + Chr4:78143054-78143073 MsG0480022890.01.T01:CDS 35.0%
! CAAAGTGAACAGCTTTTGAT+CGG - Chr4:78142885-78142904 None:intergenic 35.0%
! GGATGAGCTTTCTTTTTCTT+TGG + Chr4:78143313-78143332 MsG0480022890.01.T01:intron 35.0%
! TTGGATGGATTTGAGAAGTA+TGG + Chr4:78144270-78144289 MsG0480022890.01.T01:CDS 35.0%
AAACCTGAGGGAGATAAAGA+TGG + Chr4:78144156-78144175 MsG0480022890.01.T01:CDS 40.0%
AAAGAAAGCTCATCCTCTCA+CGG - Chr4:78143308-78143327 None:intergenic 40.0%
AACCTGAGGGAGATAAAGAT+GGG + Chr4:78144157-78144176 MsG0480022890.01.T01:CDS 40.0%
AGAACTTAGAGCAAAGGCTT+TGG + Chr4:78144242-78144261 MsG0480022890.01.T01:CDS 40.0%
AGCAGAGATACACATAACAG+GGG - Chr4:78143043-78143062 None:intergenic 40.0%
ATGATGAGATAGAGAGACTG+AGG + Chr4:78144070-78144089 MsG0480022890.01.T01:CDS 40.0%
CAAGCAGAGATACACATAAC+AGG - Chr4:78143045-78143064 None:intergenic 40.0%
CAATGCCCTCATTAAACATC+GGG + Chr4:78142782-78142801 MsG0480022890.01.T01:CDS 40.0%
CGTATTGGACTTCCCTAATT+TGG + Chr4:78142914-78142933 MsG0480022890.01.T01:CDS 40.0%
GAAACACCCGATGTTTAATG+AGG - Chr4:78142791-78142810 None:intergenic 40.0%
GACAATGATAGACCAATCTC+TGG - Chr4:78143208-78143227 None:intergenic 40.0%
GGATAAGATTCGGAGACTTT+CGG - Chr4:78142813-78142832 None:intergenic 40.0%
GGCATTGTCGCAATTGTAAA+AGG - Chr4:78142769-78142788 None:intergenic 40.0%
TTGAGGGAACTGAACTTCAA+TGG - Chr4:78142965-78142984 None:intergenic 40.0%
ACATGATGATCTTCCCTGCA+TGG + Chr4:78143727-78143746 MsG0480022890.01.T01:CDS 45.0%
AGAGATACACATAACAGGGG+GGG - Chr4:78143040-78143059 None:intergenic 45.0%
AGCAATGACACGAAGTACAC+GGG - Chr4:78143894-78143913 None:intergenic 45.0%
ATAGAGAGACTGAGGAGGTA+TGG + Chr4:78144078-78144097 MsG0480022890.01.T01:CDS 45.0%
ATCGCTTAGCACCTTTAGCA+AGG - Chr4:78143017-78143036 None:intergenic 45.0%
ATGAGATAGAGAGACTGAGG+AGG + Chr4:78144073-78144092 MsG0480022890.01.T01:CDS 45.0%
ATGGAAACCGAAGAAGGAGA+AGG - Chr4:78142862-78142881 None:intergenic 45.0%
CAGAGATACACATAACAGGG+GGG - Chr4:78143041-78143060 None:intergenic 45.0%
CAGAGGGAAGAGTTATGTAG+AGG + Chr4:78144185-78144204 MsG0480022890.01.T01:CDS 45.0%
CAGCAATGACACGAAGTACA+CGG - Chr4:78143895-78143914 None:intergenic 45.0%
CTATCTCATCATCTTCGGCA+CGG - Chr4:78144062-78144081 None:intergenic 45.0%
GAAGAGAGACTGAAACCTGA+GGG + Chr4:78144144-78144163 MsG0480022890.01.T01:CDS 45.0%
GCAGAGATACACATAACAGG+GGG - Chr4:78143042-78143061 None:intergenic 45.0%
GGCTGAAGAACTTAGAGCAA+AGG + Chr4:78144236-78144255 MsG0480022890.01.T01:CDS 45.0%
TCGCTTAGCACCTTTAGCAA+GGG - Chr4:78143016-78143035 None:intergenic 45.0%
TGTTGACATGGCAATTCTGG+CGG + Chr4:78143799-78143818 MsG0480022890.01.T01:CDS 45.0%
TTCCCATCTTTATCTCCCTC+AGG - Chr4:78144162-78144181 None:intergenic 45.0%
! ACTTAGAGCAAAGGCTTTGG+AGG + Chr4:78144245-78144264 MsG0480022890.01.T01:CDS 45.0%
! ATTTCAAGGGCACATGCAGT+GGG - Chr4:78143102-78143121 None:intergenic 45.0%
! GTGAACAGCTTTTGATCGGA+TGG - Chr4:78142881-78142900 None:intergenic 45.0%
! TCTGCTTGTGAACTTTTCGG+AGG + Chr4:78143057-78143076 MsG0480022890.01.T01:CDS 45.0%
!! AAGGCTTTGGAGGAATTGGA+TGG + Chr4:78144255-78144274 MsG0480022890.01.T01:CDS 45.0%
!! AGCAAAGGCTTTGGAGGAAT+TGG + Chr4:78144251-78144270 MsG0480022890.01.T01:CDS 45.0%
!!! TTATTTTAATAAATCAAAAT+TGG - Chr4:78143354-78143373 None:intergenic 5.0%
AAAGCTCATCCTCTCACGGT+AGG - Chr4:78143304-78143323 None:intergenic 50.0%
AGTGTTCTGCAGTGTGTGGA+GGG + Chr4:78144029-78144048 MsG0480022890.01.T01:intron 50.0%
CACTGCATGTGCCCTTGAAA+TGG + Chr4:78143101-78143120 MsG0480022890.01.T01:CDS 50.0%
CAGTTCTTGGACCTTGAAGG+GGG + Chr4:78143956-78143975 MsG0480022890.01.T01:intron 50.0%
CGGTATTCTGCCCTTGCTAA+AGG + Chr4:78143003-78143022 MsG0480022890.01.T01:CDS 50.0%
GACAAGGAGTCATCCATGCA+GGG - Chr4:78143743-78143762 None:intergenic 50.0%
GATCGGATGGAAACCGAAGA+AGG - Chr4:78142868-78142887 None:intergenic 50.0%
GCAATGACACGAAGTACACG+GGG - Chr4:78143893-78143912 None:intergenic 50.0%
GCAGTTCTTGGACCTTGAAG+GGG + Chr4:78143955-78143974 MsG0480022890.01.T01:intron 50.0%
GCTAAGAACTCGCCAGAGAT+TGG + Chr4:78143193-78143212 MsG0480022890.01.T01:intron 50.0%
GGAAGAGAGACTGAAACCTG+AGG + Chr4:78144143-78144162 MsG0480022890.01.T01:CDS 50.0%
GGCAGTTCTTGGACCTTGAA+GGG + Chr4:78143954-78143973 MsG0480022890.01.T01:intron 50.0%
GGTTCAGGTACAAGGTCAGA+GGG - Chr4:78143872-78143891 None:intergenic 50.0%
GGTTGAAAAAGCAGCAGAGG+TGG + Chr4:78144215-78144234 MsG0480022890.01.T01:CDS 50.0%
GTTGACATGGCAATTCTGGC+GGG + Chr4:78143800-78143819 MsG0480022890.01.T01:CDS 50.0%
TCACGGTAGGCAGTTAGGAA+TGG - Chr4:78143291-78143310 None:intergenic 50.0%
TGACAAGGAGTCATCCATGC+AGG - Chr4:78143744-78143763 None:intergenic 50.0%
TGCCATGTCAACACCGTAGA+TGG - Chr4:78143792-78143811 None:intergenic 50.0%
TGGGGTTGAAAAAGCAGCAG+AGG + Chr4:78144212-78144231 MsG0480022890.01.T01:CDS 50.0%
! AGGAGGTATGGTAGAGCTGT+TGG + Chr4:78144090-78144109 MsG0480022890.01.T01:CDS 50.0%
! CATTTCAAGGGCACATGCAG+TGG - Chr4:78143103-78143122 None:intergenic 50.0%
! TTTCAAGGGCACATGCAGTG+GGG - Chr4:78143101-78143120 None:intergenic 50.0%
!! CGGTGTTGACATGGCAATTC+TGG + Chr4:78143796-78143815 MsG0480022890.01.T01:CDS 50.0%
AATGGCTGCAGGGCAGTTCT+TGG + Chr4:78143943-78143962 MsG0480022890.01.T01:intron 55.0%
ACACGAAGTACACGGGGTTC+AGG - Chr4:78143887-78143906 None:intergenic 55.0%
ACCGTAGATGGCGTGGTTTG+AGG - Chr4:78143780-78143799 None:intergenic 55.0%
AGAAGGAGAAGGAGCAGCCA+TGG - Chr4:78142851-78142870 None:intergenic 55.0%
CCATGGAGCAGCGAATTGGA+AGG - Chr4:78142834-78142853 None:intergenic 55.0%
CCCTCAAACCACGCCATCTA+CGG + Chr4:78143776-78143795 MsG0480022890.01.T01:CDS 55.0%
CCGTAGATGGCGTGGTTTGA+GGG - Chr4:78143779-78143798 None:intergenic 55.0%
CCTTCCAATTCGCTGCTCCA+TGG + Chr4:78142831-78142850 MsG0480022890.01.T01:CDS 55.0%
GAGTGTTCTGCAGTGTGTGG+AGG + Chr4:78144028-78144047 MsG0480022890.01.T01:intron 55.0%
GGCTGCTCCTTCTCCTTCTT+CGG + Chr4:78142852-78142871 MsG0480022890.01.T01:CDS 55.0%
GGGCAGTTCTTGGACCTTGA+AGG + Chr4:78143953-78143972 MsG0480022890.01.T01:intron 55.0%
GGGTTCAGGTACAAGGTCAG+AGG - Chr4:78143873-78143892 None:intergenic 55.0%
GGTGATGCACTCTTTCCCCT+TGG + Chr4:78143821-78143840 MsG0480022890.01.T01:CDS 55.0%
GTACACGGGGTTCAGGTACA+AGG - Chr4:78143880-78143899 None:intergenic 55.0%
TCCTAACTGCCTACCGTGAG+AGG + Chr4:78143292-78143311 MsG0480022890.01.T01:intron 55.0%
TCCTCTCACGGTAGGCAGTT+AGG - Chr4:78143296-78143315 None:intergenic 55.0%
TGCAGTGTGTGGAGGGTTGT+TGG + Chr4:78144036-78144055 MsG0480022890.01.T01:intron 55.0%
TGTCAACACCGTAGATGGCG+TGG - Chr4:78143787-78143806 None:intergenic 55.0%
!! CGCCATCTACGGTGTTGACA+TGG + Chr4:78143787-78143806 MsG0480022890.01.T01:CDS 55.0%
AGATGGCGTGGTTTGAGGGC+TGG - Chr4:78143775-78143794 None:intergenic 60.0%
ATGCAGTGGGGAAGGCAGCA+AGG - Chr4:78143089-78143108 None:intergenic 60.0%
CTGCATTTGGGCCCCCTTCA+AGG - Chr4:78143970-78143989 None:intergenic 60.0%
CTGTGTGGGCTCCACTGGAA+TGG + Chr4:78143925-78143944 MsG0480022890.01.T01:CDS 60.0%
GAAGGGGGCCCAAATGCAGT+TGG + Chr4:78143971-78143990 MsG0480022890.01.T01:intron 60.0%
GATGACTCCTTGTCACGCCG+TGG + Chr4:78143749-78143768 MsG0480022890.01.T01:CDS 60.0%
GCAGCCATGGAGCAGCGAAT+TGG - Chr4:78142838-78142857 None:intergenic 60.0%
GCTCCACTGGAATGGCTGCA+GGG + Chr4:78143933-78143952 MsG0480022890.01.T01:CDS 60.0%
GCTGAGATAGCCCGCTGTGT+GGG + Chr4:78143911-78143930 MsG0480022890.01.T01:CDS 60.0%
TGCTGAGATAGCCCGCTGTG+TGG + Chr4:78143910-78143929 MsG0480022890.01.T01:CDS 60.0%
TTCCAGTGGAGCCCACACAG+CGG - Chr4:78143925-78143944 None:intergenic 60.0%
! AAGGGCACATGCAGTGGGGA+AGG - Chr4:78143097-78143116 None:intergenic 60.0%
! GCGGAGTGTTCTGCAGTGTG+TGG + Chr4:78144025-78144044 MsG0480022890.01.T01:intron 60.0%
CTGCCCTGCAGCCATTCCAG+TGG - Chr4:78143939-78143958 None:intergenic 65.0%
GGCTCCACTGGAATGGCTGC+AGG + Chr4:78143932-78143951 MsG0480022890.01.T01:CDS 65.0%
TCCAGTGGAGCCCACACAGC+GGG - Chr4:78143924-78143943 None:intergenic 65.0%
!! CGTGGTTTGAGGGCTGGCCA+CGG - Chr4:78143769-78143788 None:intergenic 65.0%
GCCCGCTGTGTGGGCTCCAC+TGG + Chr4:78143920-78143939 MsG0480022890.01.T01:CDS 75.0%
!! GGGCTGGCCACGGCGTGACA+AGG - Chr4:78143759-78143778 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 78142730 78144371 78142730 ID=MsG0480022890.01;Name=MsG0480022890.01
Chr4 mRNA 78142730 78144371 78142730 ID=MsG0480022890.01.T01;Parent=MsG0480022890.01;Name=MsG0480022890.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0.5|0|1|1|1|3|0|324
Chr4 exon 78142730 78143122 78142730 ID=MsG0480022890.01.T01:exon:8671;Parent=MsG0480022890.01.T01
Chr4 exon 78143707 78143957 78143707 ID=MsG0480022890.01.T01:exon:8672;Parent=MsG0480022890.01.T01
Chr4 exon 78144041 78144371 78144041 ID=MsG0480022890.01.T01:exon:8673;Parent=MsG0480022890.01.T01
Chr4 CDS 78142730 78143122 78142730 ID=MsG0480022890.01.T01:cds;Parent=MsG0480022890.01.T01
Chr4 CDS 78143707 78143957 78143707 ID=MsG0480022890.01.T01:cds;Parent=MsG0480022890.01.T01
Chr4 CDS 78144041 78144371 78144041 ID=MsG0480022890.01.T01:cds;Parent=MsG0480022890.01.T01
Gene Sequence

>MsG0480022890.01.T01

TTGTTCCTTTTTTTTCTTATAGAGTTAAAGATGGCTCCTTTTACAATTGCGACAATGCCCTCATTAAACATCGGGTGTTTCCGAAAGTCTCCGAATCTTATCCTTCCAATTCGCTGCTCCATGGCTGCTCCTTCTCCTTCTTCGGTTTCCATCCGATCAAAAGCTGTTCACTTTGATTTGAAGACGTATTGGACTTCCCTAATTTGGCAGATTAATCAGAAGCTCGATGAAGCCATTGAAGTTCAGTTCCCTCAACAGATATATGAAGCTATGCGGTATTCTGCCCTTGCTAAAGGTGCTAAGCGATCCCCCCCTGTTATGTGTATCTCTGCTTGTGAACTTTTCGGAGGCAGTCGCCTTGCTGCCTTCCCCACTGCATGTGCCCTTGAAATGGTTCATGCCGCTTCATTGATACATGATGATCTTCCCTGCATGGATGACTCCTTGTCACGCCGTGGCCAGCCCTCAAACCACGCCATCTACGGTGTTGACATGGCAATTCTGGCGGGTGATGCACTCTTTCCCCTTGGATTTCAACACATTGTTTCACATACTCCCTCTGACCTTGTACCTGAACCCCGTGTACTTCGTGTCATTGCTGAGATAGCCCGCTGTGTGGGCTCCACTGGAATGGCTGCAGGGCATGTGTGGAGGGTTGTTGGCCGTGCCGAAGATGATGAGATAGAGAGACTGAGGAGGTATGGTAGAGCTGTTGGAGTATTGTATGCTATTGTAGATGATATTTTGGAAGAGAGACTGAAACCTGAGGGAGATAAAGATGGGAAAAACAGAGGGAAGAGTTATGTAGAGGTTTATGGGGTTGAAAAAGCAGCAGAGGTGGCTGAAGAACTTAGAGCAAAGGCTTTGGAGGAATTGGATGGATTTGAGAAGTATGGAGATCAAGTGTTGCCCCTCTATAGTTTTGTGAATTACGCTATTGATAGAAGTTTCAATGTTGACGAGGCCAGTAGATGA
Protein sequence

>MsG0480022890.01.T01

LFLFFLIELKMAPFTIATMPSLNIGCFRKSPNLILPIRCSMAAPSPSSVSIRSKAVHFDLKTYWTSLIWQINQKLDEAIEVQFPQQIYEAMRYSALAKGAKRSPPVMCISACELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSLSRRGQPSNHAIYGVDMAILAGDALFPLGFQHIVSHTPSDLVPEPRVLRVIAEIARCVGSTGMAAGHVWRVVGRAEDDEIERLRRYGRAVGVLYAIVDDILEERLKPEGDKDGKNRGKSYVEVYGVEKAAEVAEELRAKALEELDGFEKYGDQVLPLYSFVNYAIDRSFNVDEASR*