AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022922.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022922.01.T01 MTR_8g080000 92.696 575 9 1 1 542 1 575 0.0 1078
MsG0480022922.01.T01 MTR_8g104920 31.317 281 161 6 246 522 26 278 2.43e-39 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022922.01.T01 AT3G26000 42.639 523 218 13 1 518 1 446 8.11e-114 345
MsG0480022922.01.T01 AT3G27290 39.636 275 134 6 246 516 128 374 7.40e-50 176
MsG0480022922.01.T01 AT2G01620 31.469 286 133 8 243 522 14 242 5.78e-34 130

Find 173 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCTCACCTTGCTTAATT+TGG 0.060912 4:+78616949 None:intergenic
GTCCTCGATGTCAGAATTTA+AGG 0.095177 4:-78615720 MsG0480022922.01.T01:CDS
TTTATTCTTGTTCCCATCTT+TGG 0.160225 4:-78615013 MsG0480022922.01.T01:three_prime_UTR
CAGAAGGCTGTCAAGGGGTT+GGG 0.184855 4:-78615678 MsG0480022922.01.T01:CDS
GAGAAGCATCCTGCAGCTTT+GGG 0.194607 4:-78617369 MsG0480022922.01.T01:CDS
AGTTTGAATGATCTGATTTC+TGG 0.202678 4:-78615102 MsG0480022922.01.T01:three_prime_UTR
AAATTCGTCTCTTAGGTATC+TGG 0.213597 4:-78617203 MsG0480022922.01.T01:CDS
TCAGTGATCCTTTCATTTAA+AGG 0.217417 4:+78617085 None:intergenic
TTACACATAGGTGGCCTTTA+TGG 0.221678 4:-78615970 MsG0480022922.01.T01:CDS
TGTTTGGCATTCTTTGTATT+TGG 0.228673 4:-78615352 MsG0480022922.01.T01:three_prime_UTR
CTCTCATTGTTCTCAGCATT+TGG 0.228913 4:-78615539 MsG0480022922.01.T01:CDS
CACTGGATGGCTAGAGGATT+TGG 0.233006 4:-78617733 MsG0480022922.01.T01:CDS
GTTAAAAGCTTACAACTCTA+TGG 0.267808 4:-78616013 MsG0480022922.01.T01:CDS
AGAAGGCTGTCAAGGGGTTG+GGG 0.271840 4:-78615677 MsG0480022922.01.T01:CDS
GAGAATTACCCTTTGTTTGC+TGG 0.274541 4:-78617660 MsG0480022922.01.T01:CDS
CAGTTATAAATTCGTCTCTT+AGG 0.274570 4:-78617210 MsG0480022922.01.T01:CDS
CCTTTGCAGTTGAGTGTTCC+TGG 0.278616 4:-78616072 MsG0480022922.01.T01:intron
GATCACTGACGACATTCTTT+TGG 0.284671 4:-78617071 MsG0480022922.01.T01:CDS
AGAAGTCTTTATGAGGAATT+TGG 0.285640 4:-78615416 MsG0480022922.01.T01:three_prime_UTR
AGTTCTCCCTGAACAAAGTT+AGG 0.299805 4:-78615470 MsG0480022922.01.T01:exon
CACATGCCCTAACTTTGTTC+AGG 0.331146 4:+78615463 None:intergenic
CATTTGGTCAAACCGTTAGA+AGG 0.331730 4:-78615523 MsG0480022922.01.T01:CDS
GGAGAAGCATCCTGCAGCTT+TGG 0.339529 4:-78617370 MsG0480022922.01.T01:CDS
GAAGGGACAGTTGGAAAGAT+TGG 0.349084 4:-78615505 MsG0480022922.01.T01:CDS
ATGCTCACCTTGCTTAATTT+GGG 0.353769 4:+78616950 None:intergenic
GCAGAAGGCTGTCAAGGGGT+TGG 0.356268 4:-78615679 MsG0480022922.01.T01:CDS
TCATTTGGAATAATGCTGTT+AGG 0.357009 4:-78617629 MsG0480022922.01.T01:CDS
TGATCTGATTTCTGGACTTA+AGG 0.362404 4:-78615094 MsG0480022922.01.T01:three_prime_UTR
AAGAAGACCTTGAGCCCTAT+TGG 0.364187 4:+78617042 None:intergenic
GTGATCATCGGGGCTGCAGC+TGG 0.367968 4:-78615202 MsG0480022922.01.T01:three_prime_UTR
TTGCTGGGTTGAATTTCATT+TGG 0.372245 4:-78617644 MsG0480022922.01.T01:CDS
GAAGGCTGTCAAGGGGTTGG+GGG 0.373623 4:-78615676 MsG0480022922.01.T01:CDS
TGAACAAATAAAGCTCTTGT+TGG 0.378608 4:-78615929 MsG0480022922.01.T01:CDS
GGTAGTAGTGGTGATGGATT+TGG 0.383857 4:-78617924 MsG0480022922.01.T01:CDS
GGCATGCCACTCAGTTGTGC+AGG 0.390130 4:-78615654 MsG0480022922.01.T01:CDS
AGCATTTCTATGACTTCAAA+AGG 0.390224 4:+78615390 None:intergenic
GGAGCATAAAATGATTATCT+TGG 0.397781 4:-78614889 MsG0480022922.01.T01:three_prime_UTR
GGTGGTGGTGCTGGCGGTAG+TGG 0.398526 4:-78617945 MsG0480022922.01.T01:CDS
TAGGTGCTGCTTGACTTGTT+TGG 0.399551 4:-78615368 MsG0480022922.01.T01:three_prime_UTR
GACAAACCAGCCGAAAATAT+CGG 0.406102 4:+78618023 None:intergenic
GATAATTTGAGAATGGGAAA+TGG 0.409134 4:-78617996 MsG0480022922.01.T01:CDS
TATCATGTAAAGGATGAGAT+TGG 0.410235 4:-78617693 MsG0480022922.01.T01:CDS
ATTTCCACCTTCTCTACAAC+AGG 0.411314 4:+78615319 None:intergenic
GTCTGAGGATAATTTGAGAA+TGG 0.418589 4:-78618003 MsG0480022922.01.T01:CDS
AGAATTACCCTTTGTTTGCT+GGG 0.418876 4:-78617659 MsG0480022922.01.T01:CDS
ATAGTTGCACTGTGATCATC+GGG 0.422470 4:-78615213 MsG0480022922.01.T01:three_prime_UTR
GCATCCTGCAGCTTTGGGGC+TGG 0.426044 4:-78617364 MsG0480022922.01.T01:CDS
GAACAAATAAAGCTCTTGTT+GGG 0.429695 4:-78615928 MsG0480022922.01.T01:CDS
TCTGAGGATAATTTGAGAAT+GGG 0.430185 4:-78618002 MsG0480022922.01.T01:CDS
TCTGAGACTGGTGGTGGTGC+TGG 0.430352 4:-78617954 MsG0480022922.01.T01:CDS
GAGCATAAAATGATTATCTT+GGG 0.433847 4:-78614888 MsG0480022922.01.T01:three_prime_UTR
GTGGTGATGGATTTGGGAAT+GGG 0.435518 4:-78617917 MsG0480022922.01.T01:CDS
TTTGCAATGAAACCTTTCAT+TGG 0.435950 4:-78615169 MsG0480022922.01.T01:three_prime_UTR
GAATGCGCTCATCTCCTTCA+AGG 0.437972 4:+78617239 None:intergenic
TTGCAATGAAACCTTTCATT+GGG 0.438232 4:-78615168 MsG0480022922.01.T01:three_prime_UTR
ATAATTTGAGAATGGGAAAT+GGG 0.439041 4:-78617995 MsG0480022922.01.T01:CDS
CTTAGTATTGAAGGTATTGT+GGG 0.439226 4:-78616039 MsG0480022922.01.T01:CDS
GGATAGTATTGTGATGTCTA+TGG 0.440862 4:-78614961 MsG0480022922.01.T01:three_prime_UTR
TGCTCCAGTAGTTGACTGTC+AGG 0.444505 4:+78615823 None:intergenic
AAGGCTGTCAAGGGGTTGGG+GGG 0.449978 4:-78615675 MsG0480022922.01.T01:CDS
CATAGTTGCACTGTGATCAT+CGG 0.455905 4:-78615214 MsG0480022922.01.T01:three_prime_UTR
TCTTCTTCAGTGTCTGAGCC+TGG 0.457257 4:-78617026 MsG0480022922.01.T01:CDS
CATAATCACAGCAATTGATT+CGG 0.460366 4:+78615249 None:intergenic
GGCTGGATCTTCTTGTGACA+TGG 0.460527 4:-78617347 MsG0480022922.01.T01:CDS
TGGTGTAAGTGGTGCTACTC+AGG 0.463587 4:-78617835 MsG0480022922.01.T01:CDS
TGGATACTTGTCCACATTTG+CGG 0.464618 4:+78617118 None:intergenic
TGATCCTTTCATTTAAAGGC+TGG 0.465060 4:+78617089 None:intergenic
AATTCGTCTCTTAGGTATCT+GGG 0.465632 4:-78617202 MsG0480022922.01.T01:CDS
AGAAATCAGATCATTCAAAC+TGG 0.468971 4:+78615104 None:intergenic
GTGGCTATTGCTAGCGTGTC+GGG 0.469500 4:-78617289 MsG0480022922.01.T01:CDS
AGTGGTGATGGATTTGGGAA+TGG 0.474149 4:-78617918 MsG0480022922.01.T01:CDS
AGATGGGAACAAGAATAAAC+AGG 0.475527 4:+78615017 None:intergenic
ATTCCTCATAAAGACTTCTT+CGG 0.476691 4:+78615420 None:intergenic
TGCTCCTGACAGTCAACTAC+TGG 0.477627 4:-78615827 MsG0480022922.01.T01:CDS
GCATTTCTATGACTTCAAAA+GGG 0.480669 4:+78615391 None:intergenic
GTAGTAGTGGTGATGGATTT+GGG 0.481750 4:-78617923 MsG0480022922.01.T01:CDS
ACCCCTTGACAGCCTTCTGC+AGG 0.481890 4:+78615682 None:intergenic
TGGCATTCTTTGTATTTGGT+GGG 0.484652 4:-78615348 MsG0480022922.01.T01:three_prime_UTR
TTGGCATTCTTTGTATTTGG+TGG 0.489670 4:-78615349 MsG0480022922.01.T01:three_prime_UTR
ATCTGCCCTGCGATGATGAT+CGG 0.490831 4:-78615762 MsG0480022922.01.T01:CDS
ATCACATCTAAAATCTAAAA+CGG 0.492576 4:+78617321 None:intergenic
CTGTCAGGAGCATTCTCTTG+TGG 0.493542 4:+78615838 None:intergenic
TCTGCCCTGCGATGATGATC+GGG 0.498507 4:-78615761 MsG0480022922.01.T01:CDS
ACATGCCCTAACTTTGTTCA+GGG 0.499035 4:+78615464 None:intergenic
ACTTAGTATTGAAGGTATTG+TGG 0.501632 4:-78616040 MsG0480022922.01.T01:CDS
GGTAGTGATAGATGTGATAG+AGG 0.503179 4:-78617861 MsG0480022922.01.T01:CDS
TGCACAAGACTTAGTATTGA+AGG 0.504665 4:-78616048 MsG0480022922.01.T01:CDS
AGATCCAGCCCCAAAGCTGC+AGG 0.506282 4:+78617360 None:intergenic
ATCATGTAAAGGATGAGATT+GGG 0.506445 4:-78617692 MsG0480022922.01.T01:CDS
TGCTAGCGTGTCGGGTGACA+CGG 0.508285 4:-78617281 MsG0480022922.01.T01:CDS
GCAATTGATTCGGCTCCTGC+AGG 0.511424 4:+78615259 None:intergenic
GTAATTCACTATTTCCGTGT+TGG 0.513263 4:-78615051 MsG0480022922.01.T01:three_prime_UTR
TGTCCTGCAGAAGGCTGTCA+AGG 0.516048 4:-78615685 MsG0480022922.01.T01:CDS
AACCGCACTTCTATTGCCGC+TGG 0.519787 4:-78615792 MsG0480022922.01.T01:CDS
ACGACGTTCACAGCCATCAC+TGG 0.522090 4:-78617750 MsG0480022922.01.T01:CDS
TTTCTGTCATATCCAAAGAT+GGG 0.522819 4:+78615001 None:intergenic
GATGATGTGAATTTCCTTGA+AGG 0.525351 4:-78617253 MsG0480022922.01.T01:CDS
GTGGAGGGTATTTCTGAGAC+TGG 0.525543 4:-78617966 MsG0480022922.01.T01:CDS
GGTATTTCTGAGACTGGTGG+TGG 0.527982 4:-78617960 MsG0480022922.01.T01:CDS
GAATGTGTGCATTGAAGAGA+AGG 0.529253 4:-78617583 MsG0480022922.01.T01:CDS
GTTCTCCCTGAACAAAGTTA+GGG 0.531377 4:-78615469 MsG0480022922.01.T01:exon
CTGCTACTTGAGTAACCTGC+AGG 0.533015 4:-78615274 MsG0480022922.01.T01:three_prime_UTR
CTGTTCGTGATCCGCAAATG+TGG 0.535717 4:-78617129 MsG0480022922.01.T01:CDS
ATACCGAAGAAGTCTTTATG+AGG 0.541343 4:-78615423 MsG0480022922.01.T01:three_prime_UTR
TGAGCCTGGTGGAGTGCACT+AGG 0.542803 4:-78617012 MsG0480022922.01.T01:CDS
TTTCCAACTGTCCCTTCTAA+CGG 0.544045 4:+78615511 None:intergenic
TTAAAAGCTTACAACTCTAT+GGG 0.545680 4:-78616012 MsG0480022922.01.T01:CDS
CTGCGATGATGATCGGGACC+TGG 0.545784 4:-78615755 MsG0480022922.01.T01:CDS
TTGACCAGCCTTTAAATGAA+AGG 0.546607 4:-78617093 MsG0480022922.01.T01:CDS
GAATTAACCAATAGGGCTCA+AGG 0.547705 4:-78617049 MsG0480022922.01.T01:CDS
TACTCAGGATTCTGTTTCGA+AGG 0.548769 4:-78617820 MsG0480022922.01.T01:CDS
TCTGAAAGTGACCCAATGAA+AGG 0.549843 4:+78615157 None:intergenic
TAGATGTGATTATAAAGATG+TGG 0.551152 4:-78617308 MsG0480022922.01.T01:CDS
TTTGAAGTCATAGAAATGCT+AGG 0.552261 4:-78615387 MsG0480022922.01.T01:three_prime_UTR
TTATCCTAGTGCACTCCACC+AGG 0.553545 4:+78617008 None:intergenic
CAGGTCCCGATCATCATCGC+AGG 0.554326 4:+78615756 None:intergenic
GTAGTGATAGATGTGATAGA+GGG 0.554527 4:-78617860 MsG0480022922.01.T01:CDS
ACAAGAATAAACAGGTTACA+TGG 0.555399 4:+78615025 None:intergenic
AATTCAACCCAGCAAACAAA+GGG 0.559439 4:+78617652 None:intergenic
AACACGCCTCAGACCATCAT+CGG 0.559608 4:+78616985 None:intergenic
GGAAATGGGTATAGAGTGGA+GGG 0.559714 4:-78617981 MsG0480022922.01.T01:CDS
ATTTGGTCAAACCGTTAGAA+GGG 0.559898 4:-78615522 MsG0480022922.01.T01:CDS
GTGATGGATTTGGGAATGGG+TGG 0.564109 4:-78617914 MsG0480022922.01.T01:CDS
GTCCTGCAGAAGGCTGTCAA+GGG 0.566367 4:-78615684 MsG0480022922.01.T01:CDS
GAATCTTCCTGTTGTAGAGA+AGG 0.571836 4:-78615326 MsG0480022922.01.T01:three_prime_UTR
GTACTGATATCCATACCAAA+AGG 0.573066 4:+78617771 None:intergenic
ATACTAAGTCTTGTGCATCC+AGG 0.574076 4:+78616054 None:intergenic
ATCCTCTAGCCATCCAGTGA+TGG 0.576800 4:+78617737 None:intergenic
TCTTCCTGTTGTAGAGAAGG+TGG 0.579725 4:-78615323 MsG0480022922.01.T01:three_prime_UTR
TGCACTAGGATAACCGATGA+TGG 0.582665 4:-78616998 MsG0480022922.01.T01:CDS
AGAAGCATCCTGCAGCTTTG+GGG 0.582763 4:-78617368 MsG0480022922.01.T01:CDS
CAACTCTATGGGTACACAGA+AGG 0.582770 4:-78616001 MsG0480022922.01.T01:CDS
GTATATGATTGTCCTGCAGA+AGG 0.585437 4:-78615694 MsG0480022922.01.T01:CDS
TGTGGCTATTGCTAGCGTGT+CGG 0.587475 4:-78617290 MsG0480022922.01.T01:CDS
ATTTAATCCCAAATTAAGCA+AGG 0.588446 4:-78616957 MsG0480022922.01.T01:intron
AATGGGAAATGGGTATAGAG+TGG 0.588737 4:-78617985 MsG0480022922.01.T01:CDS
GAGGACAAACTTCAATATCC+AGG 0.591262 4:+78615737 None:intergenic
GCATGCCACTCAGTTGTGCA+GGG 0.591272 4:-78615653 MsG0480022922.01.T01:CDS
TCTTCAGTGTCTGAGCCTGG+TGG 0.602632 4:-78617023 MsG0480022922.01.T01:CDS
AAACCGTTAGAAGGGACAGT+TGG 0.602978 4:-78615514 MsG0480022922.01.T01:CDS
TCCATACCAAAAGGATCCGA+AGG 0.603441 4:+78617780 None:intergenic
CATTTAAAGGCTGGTCAATG+TGG 0.605303 4:+78617098 None:intergenic
CATTTCTATGACTTCAAAAG+GGG 0.606303 4:+78615392 None:intergenic
AAATTCAACCCAGCAAACAA+AGG 0.606843 4:+78617651 None:intergenic
TCACAGTGCAACTATGCAGT+AGG 0.610752 4:+78615221 None:intergenic
CGTTCACAGCCATCACTGGA+TGG 0.612700 4:-78617746 MsG0480022922.01.T01:CDS
GGGCACTGACAAGAAACGAC+AGG 0.613349 4:-78615908 MsG0480022922.01.T01:CDS
GGGAAATGGGTATAGAGTGG+AGG 0.618569 4:-78617982 MsG0480022922.01.T01:CDS
AGCCATCACTGGATGGCTAG+AGG 0.621316 4:-78617739 MsG0480022922.01.T01:CDS
GAGACTGGTGGTGGTGCTGG+CGG 0.621724 4:-78617951 MsG0480022922.01.T01:CDS
CGTGTCGGGTGACACGGACA+TGG 0.624570 4:-78617275 MsG0480022922.01.T01:CDS
GAGGGTATTTCTGAGACTGG+TGG 0.625319 4:-78617963 MsG0480022922.01.T01:CDS
ACTCGCTGTCATTGATGCAG+CGG 0.642117 4:+78615593 None:intergenic
GGTAGTGGTAGTAGTGGTGA+TGG 0.643123 4:-78617930 MsG0480022922.01.T01:CDS
TTATGGTGGATATCATGTAA+AGG 0.645973 4:-78617703 MsG0480022922.01.T01:CDS
GTGAAGCATTTACACATAGG+TGG 0.646486 4:-78615979 MsG0480022922.01.T01:CDS
AGGTCCCGATCATCATCGCA+GGG 0.647035 4:+78615757 None:intergenic
AGGTTACATGGACTCCAACA+CGG 0.648787 4:+78615037 None:intergenic
TCCTGCAGAAGGCTGTCAAG+GGG 0.650944 4:-78615683 MsG0480022922.01.T01:CDS
TTCCAGCGGCAATAGAAGTG+CGG 0.659146 4:+78615790 None:intergenic
AAGGTGAAGCATTTACACAT+AGG 0.661135 4:-78615982 MsG0480022922.01.T01:CDS
AAGGATGAGATTGGGACGAG+TGG 0.669294 4:-78617684 MsG0480022922.01.T01:CDS
CTGTCACGAGCATTCTCATG+TGG 0.669779 4:+78615865 None:intergenic
GGATAACCGATGATGGTCTG+AGG 0.672266 4:-78616991 MsG0480022922.01.T01:CDS
AGGGCAGATACAAGTTCCAG+CGG 0.677265 4:+78615776 None:intergenic
GCACGCCCTGCACAACTGAG+TGG 0.690902 4:+78615648 None:intergenic
TAGTGATAGATGTGATAGAG+GGG 0.699577 4:-78617859 MsG0480022922.01.T01:CDS
AGCCTTAAATTCTGACATCG+AGG 0.700082 4:+78615718 None:intergenic
GCTGGCGGTAGTGGTAGTAG+TGG 0.702600 4:-78617936 MsG0480022922.01.T01:CDS
AGTGATAGATGTGATAGAGG+GGG 0.714639 4:-78617858 MsG0480022922.01.T01:CDS
ATACCGCGATGTAGTCAGTG+TGG 0.768376 4:-78615616 MsG0480022922.01.T01:CDS
CGGCCACACTGACTACATCG+CGG 0.811033 4:+78615613 None:intergenic
TAGTTGCACTGTGATCATCG+GGG 0.827698 4:-78615212 MsG0480022922.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAAATAAAAAAATAAG+TGG - Chr4:78617944-78617963 MsG0480022922.01.T01:CDS 10.0%
!! AATAAGTTTACGTATATTAT+TGG - Chr4:78616656-78616675 MsG0480022922.01.T01:intron 15.0%
!! ACTTAATAAAAATAAAGCAA+CGG + Chr4:78616094-78616113 None:intergenic 15.0%
!!! AATGATGTTAATTTTTTCTT+TGG - Chr4:78616827-78616846 MsG0480022922.01.T01:intron 15.0%
!! CTTATTATACTTTATCATTC+TGG - Chr4:78616006-78616025 MsG0480022922.01.T01:CDS 20.0%
!!! ATCACATCTAAAATCTAAAA+CGG + Chr4:78615608-78615627 None:intergenic 20.0%
!!! GTTGATAATTGTTTTGATTA+TGG - Chr4:78615041-78615060 MsG0480022922.01.T01:three_prime_UTR 20.0%
!!! GTTGCTTTATTTTTATTAAG+TGG - Chr4:78616093-78616112 MsG0480022922.01.T01:intron 20.0%
!!! TCATTATAGAAGTTGATTTA+AGG - Chr4:78616248-78616267 MsG0480022922.01.T01:intron 20.0%
! AAGCTACAATGAGATAAATA+TGG + Chr4:78616454-78616473 None:intergenic 25.0%
! ATAATTTGAGAATGGGAAAT+GGG - Chr4:78614931-78614950 MsG0480022922.01.T01:three_prime_UTR 25.0%
! ATTTAATCCCAAATTAAGCA+AGG - Chr4:78615969-78615988 MsG0480022922.01.T01:CDS 25.0%
! ATTTATCTCATTGTAGCTTT+AGG - Chr4:78616455-78616474 MsG0480022922.01.T01:intron 25.0%
! GAGCATAAAATGATTATCTT+GGG - Chr4:78618038-78618057 MsG0480022922.01.T01:CDS 25.0%
! TAGATGTGATTATAAAGATG+TGG - Chr4:78615618-78615637 MsG0480022922.01.T01:CDS 25.0%
! TATGTAATGTGATTTAGTGT+TGG - Chr4:78616687-78616706 MsG0480022922.01.T01:intron 25.0%
! TCATTGTTTGCAAAAAGATA+TGG + Chr4:78616812-78616831 None:intergenic 25.0%
! TCTGAAAGAAAAATAGATTG+TGG - Chr4:78616504-78616523 MsG0480022922.01.T01:intron 25.0%
! TTAAAAGCTTACAACTCTAT+GGG - Chr4:78616914-78616933 MsG0480022922.01.T01:intron 25.0%
! TTAAAATGAAGCATGTATTG+TGG - Chr4:78616031-78616050 MsG0480022922.01.T01:CDS 25.0%
!! AGAATTAGTTTAAACACTGT+TGG - Chr4:78616136-78616155 MsG0480022922.01.T01:intron 25.0%
!! CAACTGTTTAGTCTTTAATA+TGG - Chr4:78616063-78616082 MsG0480022922.01.T01:CDS 25.0%
!!! GATAATTGTTTTGATTATGG+TGG - Chr4:78615044-78615063 MsG0480022922.01.T01:three_prime_UTR 25.0%
!!! TCTTTTGGAATTAACCAATA+GGG - Chr4:78615870-78615889 MsG0480022922.01.T01:CDS 25.0%
!!! TTATTTTAGCTTGTATCAAG+TGG - Chr4:78617999-78618018 MsG0480022922.01.T01:CDS 25.0%
!!! TTCTTTTGGAATTAACCAAT+AGG - Chr4:78615869-78615888 MsG0480022922.01.T01:CDS 25.0%
AATAACAGTTAGACAATGTC+AGG + Chr4:78616727-78616746 None:intergenic 30.0%
ACAAGAATAAACAGGTTACA+TGG + Chr4:78617904-78617923 None:intergenic 30.0%
ACCACTTCCTACATATAAAT+CGG + Chr4:78616325-78616344 None:intergenic 30.0%
AGAAATCAGATCATTCAAAC+TGG + Chr4:78617825-78617844 None:intergenic 30.0%
AGAAGTCTTTATGAGGAATT+TGG - Chr4:78617510-78617529 MsG0480022922.01.T01:CDS 30.0%
AGCATTTCTATGACTTCAAA+AGG + Chr4:78617539-78617558 None:intergenic 30.0%
AGTTTGAATGATCTGATTTC+TGG - Chr4:78617824-78617843 MsG0480022922.01.T01:CDS 30.0%
ATCATGTAAAGGATGAGATT+GGG - Chr4:78615234-78615253 MsG0480022922.01.T01:three_prime_UTR 30.0%
ATTCCTCATAAAGACTTCTT+CGG + Chr4:78617509-78617528 None:intergenic 30.0%
CAGTTATAAATTCGTCTCTT+AGG - Chr4:78615716-78615735 MsG0480022922.01.T01:CDS 30.0%
CATAATCACAGCAATTGATT+CGG + Chr4:78617680-78617699 None:intergenic 30.0%
CATTTCTATGACTTCAAAAG+GGG + Chr4:78617537-78617556 None:intergenic 30.0%
CATTTCTTACTAATGCATGT+TGG + Chr4:78616429-78616448 None:intergenic 30.0%
GAACAAATAAAGCTCTTGTT+GGG - Chr4:78616998-78617017 MsG0480022922.01.T01:CDS 30.0%
GATAATTTGAGAATGGGAAA+TGG - Chr4:78614930-78614949 MsG0480022922.01.T01:three_prime_UTR 30.0%
GCATTTCTATGACTTCAAAA+GGG + Chr4:78617538-78617557 None:intergenic 30.0%
GGAGCATAAAATGATTATCT+TGG - Chr4:78618037-78618056 MsG0480022922.01.T01:CDS 30.0%
GTTAAAAGCTTACAACTCTA+TGG - Chr4:78616913-78616932 MsG0480022922.01.T01:intron 30.0%
TAAATCCCTATTTGAAGAGA+AGG - Chr4:78616481-78616500 MsG0480022922.01.T01:intron 30.0%
TAAGTGGTGAATAAGTGAAT+TGG - Chr4:78616109-78616128 MsG0480022922.01.T01:intron 30.0%
TATCATGTAAAGGATGAGAT+TGG - Chr4:78615233-78615252 MsG0480022922.01.T01:three_prime_UTR 30.0%
TCAGTGATCCTTTCATTTAA+AGG + Chr4:78615844-78615863 None:intergenic 30.0%
TCTGAGGATAATTTGAGAAT+GGG - Chr4:78614924-78614943 MsG0480022922.01.T01:three_prime_UTR 30.0%
TGAACAAATAAAGCTCTTGT+TGG - Chr4:78616997-78617016 MsG0480022922.01.T01:CDS 30.0%
TGTTTGGCATTCTTTGTATT+TGG - Chr4:78617574-78617593 MsG0480022922.01.T01:CDS 30.0%
TTGCAATGAAACCTTTCATT+GGG - Chr4:78617758-78617777 MsG0480022922.01.T01:CDS 30.0%
TTTATTCTTGTTCCCATCTT+TGG - Chr4:78617913-78617932 MsG0480022922.01.T01:CDS 30.0%
TTTCTGTCATATCCAAAGAT+GGG + Chr4:78617928-78617947 None:intergenic 30.0%
TTTGCAATGAAACCTTTCAT+TGG - Chr4:78617757-78617776 MsG0480022922.01.T01:CDS 30.0%
! GTTATTCTAGATTTTGCTCT+AGG - Chr4:78616270-78616289 MsG0480022922.01.T01:intron 30.0%
! TAAACTTATTTCAAAGTGCC+AGG + Chr4:78616646-78616665 None:intergenic 30.0%
! TATTCTTGATCTTTTGCCTT+CGG - Chr4:78615130-78615149 MsG0480022922.01.T01:three_prime_UTR 30.0%
! TCATTTGGAATAATGCTGTT+AGG - Chr4:78615297-78615316 MsG0480022922.01.T01:three_prime_UTR 30.0%
! TCTAGGATACTATCATTTGT+TGG - Chr4:78616287-78616306 MsG0480022922.01.T01:intron 30.0%
! TTTGAAGTCATAGAAATGCT+AGG - Chr4:78617539-78617558 MsG0480022922.01.T01:CDS 30.0%
! TTTTCTGTCATATCCAAAGA+TGG + Chr4:78617929-78617948 None:intergenic 30.0%
!! ACTTAGTATTGAAGGTATTG+TGG - Chr4:78616886-78616905 MsG0480022922.01.T01:intron 30.0%
!! CTTAGTATTGAAGGTATTGT+GGG - Chr4:78616887-78616906 MsG0480022922.01.T01:intron 30.0%
!! TTATGGTGGATATCATGTAA+AGG - Chr4:78615223-78615242 MsG0480022922.01.T01:three_prime_UTR 30.0%
!!! GAGGATTTGGATTTTGATTA+TGG - Chr4:78615206-78615225 MsG0480022922.01.T01:three_prime_UTR 30.0%
!!! GATTTGGATTTTGATTATGG+TGG - Chr4:78615209-78615228 MsG0480022922.01.T01:three_prime_UTR 30.0%
AAATTCAACCCAGCAAACAA+AGG + Chr4:78615278-78615297 None:intergenic 35.0%
AAATTCGTCTCTTAGGTATC+TGG - Chr4:78615723-78615742 MsG0480022922.01.T01:CDS 35.0%
AATAATGTGCCTCAACTACT+TGG + Chr4:78616531-78616550 None:intergenic 35.0%
AATTCAACCCAGCAAACAAA+GGG + Chr4:78615277-78615296 None:intergenic 35.0%
AATTCGTCTCTTAGGTATCT+GGG - Chr4:78615724-78615743 MsG0480022922.01.T01:CDS 35.0%
AGATGGGAACAAGAATAAAC+AGG + Chr4:78617912-78617931 None:intergenic 35.0%
ATACCGAAGAAGTCTTTATG+AGG - Chr4:78617503-78617522 MsG0480022922.01.T01:CDS 35.0%
ATGCTCACCTTGCTTAATTT+GGG + Chr4:78615979-78615998 None:intergenic 35.0%
ATTTGGTCAAACCGTTAGAA+GGG - Chr4:78617404-78617423 MsG0480022922.01.T01:intron 35.0%
GATATGGATGTGAAAAACTC+TGG + Chr4:78616796-78616815 None:intergenic 35.0%
GATGATGTGAATTTCCTTGA+AGG - Chr4:78615673-78615692 MsG0480022922.01.T01:CDS 35.0%
GGATAGTATTGTGATGTCTA+TGG - Chr4:78617965-78617984 MsG0480022922.01.T01:CDS 35.0%
GTAATTCACTATTTCCGTGT+TGG - Chr4:78617875-78617894 MsG0480022922.01.T01:CDS 35.0%
GTAGTGATAGATGTGATAGA+GGG - Chr4:78615066-78615085 MsG0480022922.01.T01:three_prime_UTR 35.0%
GTCTGAGGATAATTTGAGAA+TGG - Chr4:78614923-78614942 MsG0480022922.01.T01:three_prime_UTR 35.0%
TAAAAGCAGAGATGATGCAA+AGG + Chr4:78616218-78616237 None:intergenic 35.0%
TAGTGATAGATGTGATAGAG+GGG - Chr4:78615067-78615086 MsG0480022922.01.T01:three_prime_UTR 35.0%
TCAACTGTCAACTTTGATTC+AGG - Chr4:78616558-78616577 MsG0480022922.01.T01:intron 35.0%
TCAGACCTTCTCTTCAAATA+GGG + Chr4:78616489-78616508 None:intergenic 35.0%
TGATCCTTTCATTTAAAGGC+TGG + Chr4:78615840-78615859 None:intergenic 35.0%
TGGCATTCTTTGTATTTGGT+GGG - Chr4:78617578-78617597 MsG0480022922.01.T01:CDS 35.0%
TTCAGACCTTCTCTTCAAAT+AGG + Chr4:78616490-78616509 None:intergenic 35.0%
TTGACCAGCCTTTAAATGAA+AGG - Chr4:78615833-78615852 MsG0480022922.01.T01:CDS 35.0%
TTGGCATTCTTTGTATTTGG+TGG - Chr4:78617577-78617596 MsG0480022922.01.T01:CDS 35.0%
! AAGGTGAAGCATTTACACAT+AGG - Chr4:78616944-78616963 MsG0480022922.01.T01:intron 35.0%
! AAGTGGAACTCATTTTACTG+TGG - Chr4:78618016-78618035 MsG0480022922.01.T01:CDS 35.0%
! AGAATTACCCTTTGTTTGCT+GGG - Chr4:78615267-78615286 MsG0480022922.01.T01:three_prime_UTR 35.0%
! ATTGAAGAGAAGGATTTTCG+TGG - Chr4:78615353-78615372 MsG0480022922.01.T01:three_prime_UTR 35.0%
! CTTTTACCTTTGATAGATCC+TGG - Chr4:78616625-78616644 MsG0480022922.01.T01:intron 35.0%
! GTACGAAGAAACATTTTGTC+TGG - Chr4:78617354-78617373 MsG0480022922.01.T01:CDS 35.0%
! GTACTGATATCCATACCAAA+AGG + Chr4:78615158-78615177 None:intergenic 35.0%
! TGATCTGATTTCTGGACTTA+AGG - Chr4:78617832-78617851 MsG0480022922.01.T01:CDS 35.0%
! TGCACAAGACTTAGTATTGA+AGG - Chr4:78616878-78616897 MsG0480022922.01.T01:intron 35.0%
! TGCAGCGAGAAATTTTTCAT+GGG - Chr4:78615425-78615444 MsG0480022922.01.T01:three_prime_UTR 35.0%
! TTGAAGAGAAGGATTTTCGT+GGG - Chr4:78615354-78615373 MsG0480022922.01.T01:three_prime_UTR 35.0%
! TTGCTGGGTTGAATTTCATT+TGG - Chr4:78615282-78615301 MsG0480022922.01.T01:three_prime_UTR 35.0%
!! AAGAATTTTCAAGGGATGAG+TGG - Chr4:78615505-78615524 MsG0480022922.01.T01:CDS 35.0%
!! GAATTTTCTAGGAGAGAAGT+TGG - Chr4:78615535-78615554 MsG0480022922.01.T01:CDS 35.0%
!!! GTGGATTTGGTGAATTTTCT+AGG - Chr4:78615524-78615543 MsG0480022922.01.T01:CDS 35.0%
AAAGGACACATGCTCAAAAC+AGG + Chr4:78616200-78616219 None:intergenic 40.0%
AATGGGAAATGGGTATAGAG+TGG - Chr4:78614941-78614960 MsG0480022922.01.T01:three_prime_UTR 40.0%
ACATGCCCTAACTTTGTTCA+GGG + Chr4:78617465-78617484 None:intergenic 40.0%
AGCCTTAAATTCTGACATCG+AGG + Chr4:78617211-78617230 None:intergenic 40.0%
AGTGATAGATGTGATAGAGG+GGG - Chr4:78615068-78615087 MsG0480022922.01.T01:three_prime_UTR 40.0%
AGTTCTCCCTGAACAAAGTT+AGG - Chr4:78617456-78617475 MsG0480022922.01.T01:intron 40.0%
ATAGTTGCACTGTGATCATC+GGG - Chr4:78617713-78617732 MsG0480022922.01.T01:CDS 40.0%
ATTTCCACCTTCTCTACAAC+AGG + Chr4:78617610-78617629 None:intergenic 40.0%
CATAGTTGCACTGTGATCAT+CGG - Chr4:78617712-78617731 MsG0480022922.01.T01:CDS 40.0%
CATGAAAAATTTCTCGCTGC+AGG + Chr4:78615426-78615445 None:intergenic 40.0%
CATGCTCACCTTGCTTAATT+TGG + Chr4:78615980-78615999 None:intergenic 40.0%
CATTTGGTCAAACCGTTAGA+AGG - Chr4:78617403-78617422 MsG0480022922.01.T01:intron 40.0%
CTCTCATTGTTCTCAGCATT+TGG - Chr4:78617387-78617406 MsG0480022922.01.T01:intron 40.0%
GAAATACACAGTTGCAGTGA+AGG + Chr4:78616390-78616409 None:intergenic 40.0%
GAATCTTCCTGTTGTAGAGA+AGG - Chr4:78617600-78617619 MsG0480022922.01.T01:CDS 40.0%
GAATGTGTGCATTGAAGAGA+AGG - Chr4:78615343-78615362 MsG0480022922.01.T01:three_prime_UTR 40.0%
GAATTAACCAATAGGGCTCA+AGG - Chr4:78615877-78615896 MsG0480022922.01.T01:CDS 40.0%
GACAAACCAGCCGAAAATAT+CGG + Chr4:78614906-78614925 None:intergenic 40.0%
GAGGACAAACTTCAATATCC+AGG + Chr4:78617192-78617211 None:intergenic 40.0%
GGTAGTGATAGATGTGATAG+AGG - Chr4:78615065-78615084 MsG0480022922.01.T01:three_prime_UTR 40.0%
GTATATGATTGTCCTGCAGA+AGG - Chr4:78617232-78617251 MsG0480022922.01.T01:CDS 40.0%
GTCCTCGATGTCAGAATTTA+AGG - Chr4:78617206-78617225 MsG0480022922.01.T01:CDS 40.0%
GTTCTCCCTGAACAAAGTTA+GGG - Chr4:78617457-78617476 MsG0480022922.01.T01:intron 40.0%
TACTCAGGATTCTGTTTCGA+AGG - Chr4:78615106-78615125 MsG0480022922.01.T01:three_prime_UTR 40.0%
TCATTTAACCCAAACGCATC+TGG + Chr4:78616603-78616622 None:intergenic 40.0%
TCTGAAAGTGACCCAATGAA+AGG + Chr4:78617772-78617791 None:intergenic 40.0%
TGGATACTTGTCCACATTTG+CGG + Chr4:78615811-78615830 None:intergenic 40.0%
TTACACATAGGTGGCCTTTA+TGG - Chr4:78616956-78616975 MsG0480022922.01.T01:intron 40.0%
TTTACTGTCCAGATGCGTTT+GGG - Chr4:78616592-78616611 MsG0480022922.01.T01:intron 40.0%
TTTCCAACTGTCCCTTCTAA+CGG + Chr4:78617418-78617437 None:intergenic 40.0%
! AAAGTGCCAGGATCTATCAA+AGG + Chr4:78616634-78616653 None:intergenic 40.0%
! ATACTAAGTCTTGTGCATCC+AGG + Chr4:78616875-78616894 None:intergenic 40.0%
! CATTTAAAGGCTGGTCAATG+TGG + Chr4:78615831-78615850 None:intergenic 40.0%
! CTCTCATCGACCGATATTTT+CGG - Chr4:78614893-78614912 MsG0480022922.01.T01:three_prime_UTR 40.0%
! CTGCAGCGAGAAATTTTTCA+TGG - Chr4:78615424-78615443 MsG0480022922.01.T01:three_prime_UTR 40.0%
! GAAATTTTTCATGGGGTGAG+TGG - Chr4:78615433-78615452 MsG0480022922.01.T01:three_prime_UTR 40.0%
! GAGAATTACCCTTTGTTTGC+TGG - Chr4:78615266-78615285 MsG0480022922.01.T01:three_prime_UTR 40.0%
! GATCACTGACGACATTCTTT+TGG - Chr4:78615855-78615874 MsG0480022922.01.T01:CDS 40.0%
! GCAGCGAGAAATTTTTCATG+GGG - Chr4:78615426-78615445 MsG0480022922.01.T01:three_prime_UTR 40.0%
! GCAGCGAGAAGAATTTTCAA+GGG - Chr4:78615497-78615516 MsG0480022922.01.T01:CDS 40.0%
! GCCGATTTATATGTAGGAAG+TGG - Chr4:78616321-78616340 MsG0480022922.01.T01:intron 40.0%
! GCTTTTGTGTAACGCCATAA+AGG + Chr4:78616973-78616992 None:intergenic 40.0%
! GTGAAGCATTTACACATAGG+TGG - Chr4:78616947-78616966 MsG0480022922.01.T01:intron 40.0%
! TGAAGAGAAGGATTTTCGTG+GGG - Chr4:78615355-78615374 MsG0480022922.01.T01:three_prime_UTR 40.0%
! TGCAGCGAGAAGAATTTTCA+AGG - Chr4:78615496-78615515 MsG0480022922.01.T01:CDS 40.0%
! TTTCAAGGGATGAGTGGATT+TGG - Chr4:78615511-78615530 MsG0480022922.01.T01:CDS 40.0%
! TTTTACTGTCCAGATGCGTT+TGG - Chr4:78616591-78616610 MsG0480022922.01.T01:intron 40.0%
!! ACGCATGCCGATTTATATGT+AGG - Chr4:78616315-78616334 MsG0480022922.01.T01:intron 40.0%
!! GTAGTAGTGGTGATGGATTT+GGG - Chr4:78615003-78615022 MsG0480022922.01.T01:three_prime_UTR 40.0%
!! TGATTTAGTGTTGGTACGCT+TGG - Chr4:78616696-78616715 MsG0480022922.01.T01:intron 40.0%
AAACCGTTAGAAGGGACAGT+TGG - Chr4:78617412-78617431 MsG0480022922.01.T01:intron 45.0%
AAGAAGACCTTGAGCCCTAT+TGG + Chr4:78615887-78615906 None:intergenic 45.0%
AGGTTACATGGACTCCAACA+CGG + Chr4:78617892-78617911 None:intergenic 45.0%
CAACTCTATGGGTACACAGA+AGG - Chr4:78616925-78616944 MsG0480022922.01.T01:intron 45.0%
CACATGCCCTAACTTTGTTC+AGG + Chr4:78617466-78617485 None:intergenic 45.0%
GAAGGGACAGTTGGAAAGAT+TGG - Chr4:78617421-78617440 MsG0480022922.01.T01:intron 45.0%
GATTGTGGACCAAGTAGTTG+AGG - Chr4:78616519-78616538 MsG0480022922.01.T01:intron 45.0%
GGAAATGGGTATAGAGTGGA+GGG - Chr4:78614945-78614964 MsG0480022922.01.T01:three_prime_UTR 45.0%
TAGTTGCACTGTGATCATCG+GGG - Chr4:78617714-78617733 MsG0480022922.01.T01:CDS 45.0%
TCACAGTGCAACTATGCAGT+AGG + Chr4:78617708-78617727 None:intergenic 45.0%
TCCATACCAAAAGGATCCGA+AGG + Chr4:78615149-78615168 None:intergenic 45.0%
TCTTCCTGTTGTAGAGAAGG+TGG - Chr4:78617603-78617622 MsG0480022922.01.T01:CDS 45.0%
TGCACTAGGATAACCGATGA+TGG - Chr4:78615928-78615947 MsG0480022922.01.T01:CDS 45.0%
! AGGTTCCACACTTTTCCTCA+AGG - Chr4:78615317-78615336 MsG0480022922.01.T01:three_prime_UTR 45.0%
! CTTTTGCCTTCGGATCCTTT+TGG - Chr4:78615140-78615159 MsG0480022922.01.T01:three_prime_UTR 45.0%
! GAGTTTTCTCGGAGAGAAGT+TGG - Chr4:78615463-78615482 MsG0480022922.01.T01:exon 45.0%
! GAGTTTTCTCGTAGAGAAGC+TGG - Chr4:78615392-78615411 MsG0480022922.01.T01:three_prime_UTR 45.0%
! GGTTCCACACTTTTCCTCAA+GGG - Chr4:78615318-78615337 MsG0480022922.01.T01:three_prime_UTR 45.0%
! GTTCCACACTTTTCCTCAAG+GGG - Chr4:78615319-78615338 MsG0480022922.01.T01:three_prime_UTR 45.0%
! TTCCACACTTTTCCTCAAGG+GGG - Chr4:78615320-78615339 MsG0480022922.01.T01:three_prime_UTR 45.0%
! TTTCATGGGGTGAGTGGATT+CGG - Chr4:78615439-78615458 MsG0480022922.01.T01:three_prime_UTR 45.0%
!! AGTGGTGATGGATTTGGGAA+TGG - Chr4:78615008-78615027 MsG0480022922.01.T01:three_prime_UTR 45.0%
!! GGTAGTAGTGGTGATGGATT+TGG - Chr4:78615002-78615021 MsG0480022922.01.T01:three_prime_UTR 45.0%
!! GTGGTGATGGATTTGGGAAT+GGG - Chr4:78615009-78615028 MsG0480022922.01.T01:three_prime_UTR 45.0%
!! TAGGTGCTGCTTGACTTGTT+TGG - Chr4:78617558-78617577 MsG0480022922.01.T01:CDS 45.0%
!!! ATTTTCGGCTGGTTTGTCTG+AGG - Chr4:78614908-78614927 MsG0480022922.01.T01:three_prime_UTR 45.0%
!!! GTGGATTCGGTGAGTTTTCT+CGG - Chr4:78615452-78615471 MsG0480022922.01.T01:exon 45.0%
AACACGCCTCAGACCATCAT+CGG + Chr4:78615944-78615963 None:intergenic 50.0%
AAGGATGAGATTGGGACGAG+TGG - Chr4:78615242-78615261 MsG0480022922.01.T01:three_prime_UTR 50.0%
ACTCGCTGTCATTGATGCAG+CGG + Chr4:78617336-78617355 None:intergenic 50.0%
AGGGCAGATACAAGTTCCAG+CGG + Chr4:78617153-78617172 None:intergenic 50.0%
ATACCGCGATGTAGTCAGTG+TGG - Chr4:78617310-78617329 MsG0480022922.01.T01:CDS 50.0%
ATCCTCTAGCCATCCAGTGA+TGG + Chr4:78615192-78615211 None:intergenic 50.0%
ATCTGCCCTGCGATGATGAT+CGG - Chr4:78617164-78617183 MsG0480022922.01.T01:CDS 50.0%
CACTGGATGGCTAGAGGATT+TGG - Chr4:78615193-78615212 MsG0480022922.01.T01:three_prime_UTR 50.0%
CCAGGAACACTCAACTGCAA+AGG + Chr4:78616857-78616876 None:intergenic 50.0%
CCTTTGCAGTTGAGTGTTCC+TGG - Chr4:78616854-78616873 MsG0480022922.01.T01:intron 50.0%
CTGTCACGAGCATTCTCATG+TGG + Chr4:78617064-78617083 None:intergenic 50.0%
CTGTTCGTGATCCGCAAATG+TGG - Chr4:78615797-78615816 MsG0480022922.01.T01:CDS 50.0%
GAATGCGCTCATCTCCTTCA+AGG + Chr4:78615690-78615709 None:intergenic 50.0%
GATAGATGTGATAGAGGGGG+TGG - Chr4:78615071-78615090 MsG0480022922.01.T01:three_prime_UTR 50.0%
GGCTGGATCTTCTTGTGACA+TGG - Chr4:78615579-78615598 MsG0480022922.01.T01:CDS 50.0%
GGGAAATGGGTATAGAGTGG+AGG - Chr4:78614944-78614963 MsG0480022922.01.T01:three_prime_UTR 50.0%
TCTTCTTCAGTGTCTGAGCC+TGG - Chr4:78615900-78615919 MsG0480022922.01.T01:CDS 50.0%
TGCTCCAGTAGTTGACTGTC+AGG + Chr4:78617106-78617125 None:intergenic 50.0%
TGCTCCTGACAGTCAACTAC+TGG - Chr4:78617099-78617118 MsG0480022922.01.T01:CDS 50.0%
TGTGGCTATTGCTAGCGTGT+CGG - Chr4:78615636-78615655 MsG0480022922.01.T01:CDS 50.0%
TTATCCTAGTGCACTCCACC+AGG + Chr4:78615921-78615940 None:intergenic 50.0%
TTCCAGCGGCAATAGAAGTG+CGG + Chr4:78617139-78617158 None:intergenic 50.0%
TTCTCGGAGAGAAGTTGGAG+AGG - Chr4:78615468-78615487 MsG0480022922.01.T01:exon 50.0%
! AAGGATTTTCGTGGGGTGAG+TGG - Chr4:78615362-78615381 MsG0480022922.01.T01:three_prime_UTR 50.0%
! CATCGACCGATATTTTCGGC+TGG - Chr4:78614897-78614916 MsG0480022922.01.T01:three_prime_UTR 50.0%
! CTGCTACTTGAGTAACCTGC+AGG - Chr4:78617652-78617671 MsG0480022922.01.T01:CDS 50.0%
! GCCTTCGGATCCTTTTGGTA+TGG - Chr4:78615145-78615164 MsG0480022922.01.T01:three_prime_UTR 50.0%
! GGATAACCGATGATGGTCTG+AGG - Chr4:78615935-78615954 MsG0480022922.01.T01:CDS 50.0%
! GGTAGTGGTAGTAGTGGTGA+TGG - Chr4:78614996-78615015 MsG0480022922.01.T01:three_prime_UTR 50.0%
! TCCACACTTTTCCTCAAGGG+GGG - Chr4:78615321-78615340 MsG0480022922.01.T01:three_prime_UTR 50.0%
!! AGAAGCATCCTGCAGCTTTG+GGG - Chr4:78615558-78615577 MsG0480022922.01.T01:CDS 50.0%
!! CTGTCAGGAGCATTCTCTTG+TGG + Chr4:78617091-78617110 None:intergenic 50.0%
!! GAGAAGCATCCTGCAGCTTT+GGG - Chr4:78615557-78615576 MsG0480022922.01.T01:CDS 50.0%
!! GAGGGTATTTCTGAGACTGG+TGG - Chr4:78614963-78614982 MsG0480022922.01.T01:three_prime_UTR 50.0%
!! GGTATTTCTGAGACTGGTGG+TGG - Chr4:78614966-78614985 MsG0480022922.01.T01:three_prime_UTR 50.0%
!! GTGATGGATTTGGGAATGGG+TGG - Chr4:78615012-78615031 MsG0480022922.01.T01:three_prime_UTR 50.0%
!! GTGGAGGGTATTTCTGAGAC+TGG - Chr4:78614960-78614979 MsG0480022922.01.T01:three_prime_UTR 50.0%
!! TGGTGTAAGTGGTGCTACTC+AGG - Chr4:78615091-78615110 MsG0480022922.01.T01:three_prime_UTR 50.0%
AACCGCACTTCTATTGCCGC+TGG - Chr4:78617134-78617153 MsG0480022922.01.T01:CDS 55.0%
ACGACGTTCACAGCCATCAC+TGG - Chr4:78615176-78615195 MsG0480022922.01.T01:three_prime_UTR 55.0%
AGAAGGCTGTCAAGGGGTTG+GGG - Chr4:78617249-78617268 MsG0480022922.01.T01:CDS 55.0%
AGCCATCACTGGATGGCTAG+AGG - Chr4:78615187-78615206 MsG0480022922.01.T01:three_prime_UTR 55.0%
AGGTCCCGATCATCATCGCA+GGG + Chr4:78617172-78617191 None:intergenic 55.0%
ATGCACACATTCCCCCCTTG+AGG + Chr4:78615335-78615354 None:intergenic 55.0%
CAGAAGGCTGTCAAGGGGTT+GGG - Chr4:78617248-78617267 MsG0480022922.01.T01:CDS 55.0%
CGTTCACAGCCATCACTGGA+TGG - Chr4:78615180-78615199 MsG0480022922.01.T01:three_prime_UTR 55.0%
GATAGAGGGGGTGGTGTAAG+TGG - Chr4:78615080-78615099 MsG0480022922.01.T01:three_prime_UTR 55.0%
GCATGCCACTCAGTTGTGCA+GGG - Chr4:78617273-78617292 MsG0480022922.01.T01:CDS 55.0%
GTCCTGCAGAAGGCTGTCAA+GGG - Chr4:78617242-78617261 MsG0480022922.01.T01:CDS 55.0%
GTGGCTATTGCTAGCGTGTC+GGG - Chr4:78615637-78615656 MsG0480022922.01.T01:CDS 55.0%
TCCCCCCTTGAGGAAAAGTG+TGG + Chr4:78615325-78615344 None:intergenic 55.0%
TCCTGCAGAAGGCTGTCAAG+GGG - Chr4:78617243-78617262 MsG0480022922.01.T01:CDS 55.0%
TCTGCCCTGCGATGATGATC+GGG - Chr4:78617165-78617184 MsG0480022922.01.T01:CDS 55.0%
TCTTCAGTGTCTGAGCCTGG+TGG - Chr4:78615903-78615922 MsG0480022922.01.T01:CDS 55.0%
TGTCCTGCAGAAGGCTGTCA+AGG - Chr4:78617241-78617260 MsG0480022922.01.T01:CDS 55.0%
!! GCAATTGATTCGGCTCCTGC+AGG + Chr4:78617670-78617689 None:intergenic 55.0%
!! GGAGAAGCATCCTGCAGCTT+TGG - Chr4:78615556-78615575 MsG0480022922.01.T01:CDS 55.0%
!! GGGCACTGACAAGAAACGAC+AGG - Chr4:78617018-78617037 MsG0480022922.01.T01:CDS 55.0%
AAGGCTGTCAAGGGGTTGGG+GGG - Chr4:78617251-78617270 MsG0480022922.01.T01:CDS 60.0%
ACCCCTTGACAGCCTTCTGC+AGG + Chr4:78617247-78617266 None:intergenic 60.0%
AGATCCAGCCCCAAAGCTGC+AGG + Chr4:78615569-78615588 None:intergenic 60.0%
CAGGTCCCGATCATCATCGC+AGG + Chr4:78617173-78617192 None:intergenic 60.0%
CTGCGATGATGATCGGGACC+TGG - Chr4:78617171-78617190 MsG0480022922.01.T01:CDS 60.0%
GAAGGCTGTCAAGGGGTTGG+GGG - Chr4:78617250-78617269 MsG0480022922.01.T01:CDS 60.0%
GCAGAAGGCTGTCAAGGGGT+TGG - Chr4:78617247-78617266 MsG0480022922.01.T01:CDS 60.0%
GGCATGCCACTCAGTTGTGC+AGG - Chr4:78617272-78617291 MsG0480022922.01.T01:CDS 60.0%
TGAGCCTGGTGGAGTGCACT+AGG - Chr4:78615914-78615933 MsG0480022922.01.T01:CDS 60.0%
TGCTAGCGTGTCGGGTGACA+CGG - Chr4:78615645-78615664 MsG0480022922.01.T01:CDS 60.0%
! CGGCCACACTGACTACATCG+CGG + Chr4:78617316-78617335 None:intergenic 60.0%
! GCTGGCGGTAGTGGTAGTAG+TGG - Chr4:78614990-78615009 MsG0480022922.01.T01:three_prime_UTR 60.0%
!! TCTGAGACTGGTGGTGGTGC+TGG - Chr4:78614972-78614991 MsG0480022922.01.T01:three_prime_UTR 60.0%
CGTGTCGGGTGACACGGACA+TGG - Chr4:78615651-78615670 MsG0480022922.01.T01:CDS 65.0%
GCACGCCCTGCACAACTGAG+TGG + Chr4:78617281-78617300 None:intergenic 65.0%
GTGATCATCGGGGCTGCAGC+TGG - Chr4:78617724-78617743 MsG0480022922.01.T01:CDS 65.0%
!! GAGACTGGTGGTGGTGCTGG+CGG - Chr4:78614975-78614994 MsG0480022922.01.T01:three_prime_UTR 65.0%
!! GCATCCTGCAGCTTTGGGGC+TGG - Chr4:78615562-78615581 MsG0480022922.01.T01:CDS 65.0%
!! GGTGGTGGTGCTGGCGGTAG+TGG - Chr4:78614981-78615000 MsG0480022922.01.T01:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 78614879 78618069 78614879 ID=MsG0480022922.01;Name=MsG0480022922.01
Chr4 mRNA 78614879 78618069 78614879 ID=MsG0480022922.01.T01;Parent=MsG0480022922.01;Name=MsG0480022922.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0.5|0.33|1|1|1|3|592|542
Chr4 exon 78614879 78616085 78614879 ID=MsG0480022922.01.T01:exon:5987;Parent=MsG0480022922.01.T01
Chr4 exon 78616958 78617402 78616958 ID=MsG0480022922.01.T01:exon:5986;Parent=MsG0480022922.01.T01
Chr4 exon 78617501 78618069 78617501 ID=MsG0480022922.01.T01:exon:5985;Parent=MsG0480022922.01.T01
Chr4 CDS 78617501 78618069 78617501 ID=MsG0480022922.01.T01:cds;Parent=MsG0480022922.01.T01
Chr4 CDS 78616958 78617402 78616958 ID=MsG0480022922.01.T01:cds;Parent=MsG0480022922.01.T01
Chr4 CDS 78615471 78616085 78615471 ID=MsG0480022922.01.T01:cds;Parent=MsG0480022922.01.T01
Chr4 three_prime_UTR 78614879 78615470 78614879 ID=MsG0480022922.01.T01:three_prime_utr;Parent=MsG0480022922.01.T01
Gene Sequence

>MsG0480022922.01.T01

ATGGCATTGAATTTCTCTCATCGACCGATATTTTCGGCTGGTTTGTCTGAGGATAATTTGAGAATGGGAAATGGGTATAGAGTGGAGGGTATTTCTGAGACTGGTGGTGGTGCTGGCGGTAGTGGTAGTAGTGGTGATGGATTTGGGAATGGGTGGCATAATGTTGATAATTGTTTTGATTATGGTGGTAGTGATAGATGTGATAGAGGGGGTGGTGTAAGTGGTGCTACTCAGGATTCTGTTTCGAAGGATATTCTTGATCTTTTGCCTTCGGATCCTTTTGGTATGGATATCAGTACGACGTTCACAGCCATCACTGGATGGCTAGAGGATTTGGATTTTGATTATGGTGGATATCATGTAAAGGATGAGATTGGGACGAGTGGTGAGAATTACCCTTTGTTTGCTGGGTTGAATTTCATTTGGAATAATGCTGTTAGGTTCCACACTTTTCCTCAAGGGGGGAATGTGTGCATTGAAGAGAAGGATTTTCGTGGGGTGAGTGGATTCAGTGAGTTTTCTCGTAGAGAAGCTGGAGAAGTATCCTGCAGCGAGAAATTTTTCATGGGGAGAGAAGTTGGAGAAGCATCCTGCAGCTTTGGGGCTGGATCTTCTTGTGACATGGATGCCGTTTTAGATTTTAGATGTGATTATAAAGATGTGGCTATTGCTAGCGTGTCGGGTGACACGGACATGGATGATGTGAATTTCCTTGAAGGAGATGAGCGCATTCTTCATTCAGTTATAAATTCGTCTCTTAGGTATCTGGGTTTGTCTGATCTTCTTGTTCTTGAGAGAGTATGTAAATCTCTGCATTCTACTGTTCGTGATCCGCAAATGTGGACAAGTATCCACATTGACCAGCCTTTAAATGAAAGGATCACTGACGACATTCTTTTGGAATTAACCAATAGGGCTCAAGGTCTTCTTCAGTGTCTGAGCCTGGTGGAGTGCACTAGGATAACCGATGATGGTCTGAGGCGTGTTCTTGAATTTAATCCCAAATTAAGCAAGTTGAGTGTTCCTGGATGCACAAGACTTAGTATTGAAGGTATTGTGGGTATGTTAAAAGCTTACAACTCTATGGGTACACAGAAGGTGAAGCATTTACACATAGGTGGCCTTTATGGCGTTACACAAAAGCATTTTGAACAAATAAAGCTCTTGTTGGGCACTGACAAGAAACGACAGGAGAATGCTCTTGACATTCAACCACATGAGAATGCTCGTGACAGTCAACCACAAGAGAATGCTCCTGACAGTCAACTACTGGAGCATTCTCACAAACCGCACTTCTATTGCCGCTGGAACTTGTATCTGCCCTGCGATGATGATCGGGACCTGGATATTGAAGTTTGTCCTCGATGTCAGAATTTAAGGCTTGTATATGATTGTCCTGCAGAAGGCTGTCAAGGGGTTGGGGGGCATGCCACTCAGTTGTGCAGGGCGTGCACTCTCTGCATACCGCGATGTAGTCAGTGTGGCCGCTGCATCAATGACAGCGAGTACGAAGAAACATTTTGTCTGGAATTGCTTTGCTCTCATTGTTCTCAGCATTTGGTCAAACCGTTAGAAGGGACAGTTGGAAAGATTGGACTAGTCAGCTCAGTTCTCCCTGAACAAAGTTAG
Protein sequence

>MsG0480022922.01.T01

MALNFSHRPIFSAGLSEDNLRMGNGYRVEGISETGGGAGGSGSSGDGFGNGWHNVDNCFDYGGSDRCDRGGGVSGATQDSVSKDILDLLPSDPFGMDISTTFTAITGWLEDLDFDYGGYHVKDEIGTSGENYPLFAGLNFIWNNAVRFHTFPQGGNVCIEEKDFRGVSGFSEFSRREAGEVSCSEKFFMGREVGEASCSFGAGSSCDMDAVLDFRCDYKDVAIASVSGDTDMDDVNFLEGDERILHSVINSSLRYLGLSDLLVLERVCKSLHSTVRDPQMWTSIHIDQPLNERITDDILLELTNRAQGLLQCLSLVECTRITDDGLRRVLEFNPKLSKLSVPGCTRLSIEGIVGMLKAYNSMGTQKVKHLHIGGLYGVTQKHFEQIKLLLGTDKKRQENALDIQPHENARDSQPQENAPDSQLLEHSHKPHFYCRWNLYLPCDDDRDLDIEVCPRCQNLRLVYDCPAEGCQGVGGHATQLCRACTLCIPRCSQCGRCINDSEYEETFCLELLCSHCSQHLVKPLEGTVGKIGLVSSVLPEQS*