AlfalfaGEDB | MsG0180000293.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000293.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000293.01.T01	XP_003589128.1	97.351	151	4	0	1	151	379	529	2.33E-95	296
MsG0180000293.01.T02	XP_003589128.1	96.078	102	4	0	1	102	428	529	4.41E-49	174

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000293.01.T01	Q9S9X4	61.644	146	54	1	2	147	390	533	1.40E-48	167
MsG0180000293.01.T02	Q9S9X4	56.122	98	41	1	1	98	438	533	4.53E-23	95.5

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000293.01.T01	Q2HTR2	97.351	151	4	0	1	151	379	529	1.11e-95	296
MsG0180000293.01.T02	Q2HTR2	96.078	102	4	0	1	102	428	529	2.11e-49	174

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049059.01	MsG0180000293.01	0.867928	9.530605e-66	3.385286e-62
MsG0180000235.01	MsG0180000293.01	0.810775	9.744923e-51	5.927396e-48
MsG0180000293.01	MsG0180001294.01	0.814537	1.464555e-51	9.853549e-49
MsG0180000293.01	MsG0180001551.01	0.854088	1.553308e-61	3.429882e-58
MsG0180000293.01	MsG0180001599.01	0.802753	4.831401e-49	2.385773e-46
MsG0180000293.01	MsG0180002489.01	0.844824	5.952402e-59	9.727373e-56
MsG0180000293.01	MsG0180002491.01	0.855491	6.087581e-62	1.407923e-58
MsG0180000293.01	MsG0180002912.01	0.821720	3.474671e-53	2.849391e-50
MsG0180000293.01	MsG0180003337.01	0.849320	3.488251e-60	6.588088e-57
MsG0180000293.01	MsG0180003409.01	0.810861	9.337836e-51	5.692863e-48
MsG0180000293.01	MsG0180003744.01	0.824772	6.735214e-54	6.024033e-51
MsG0180000293.01	MsG0180003864.01	0.834710	2.560524e-56	3.063026e-53
MsG0180000293.01	MsG0180003948.01	0.829368	5.354553e-55	5.469486e-52
MsG0180000293.01	MsG0180004005.01	0.855419	6.387993e-62	1.473992e-58
MsG0180000293.01	MsG0180004050.01	0.803915	2.775267e-49	1.411937e-46
MsG0180000293.01	MsG0180004060.01	0.800620	1.323023e-48	6.188865e-46
MsG0180000293.01	MsG0180004162.01	0.820875	5.443357e-53	4.359864e-50
MsG0180000293.01	MsG0180004651.01	0.838499	2.774047e-57	3.722329e-54
MsG0180000293.01	MsG0180004762.01	0.812811	3.513943e-51	2.256056e-48
MsG0180000293.01	MsG0180004767.01	0.801761	7.728570e-49	3.721027e-46
MsG0180000293.01	MsG0180005125.01	0.834216	3.406536e-56	4.015565e-53
MsG0180000293.01	MsG0180005407.01	0.804513	2.083381e-49	1.076222e-46
MsG0180000293.01	MsG0180005614.01	0.841452	4.711569e-58	6.926556e-55
MsG0180000293.01	MsG0180005765.01	0.833141	6.324312e-56	7.219254e-53
MsG0180000293.01	MsG0180005813.01	0.819682	1.021499e-52	7.914317e-50
MsG0180000293.01	MsG0180005842.01	0.839083	1.958858e-57	2.675765e-54
MsG0180000293.01	MsG0180005878.01	0.861021	1.374389e-63	3.832779e-60
MsG0180000293.01	MsG0180005949.01	0.805162	1.525247e-49	8.012260e-47
MsG0180000293.01	MsG0180006016.01	0.856389	3.325109e-62	7.923908e-59
MsG0180000293.01	MsG0180006069.01	0.856441	3.211064e-62	7.665352e-59
MsG0180000293.01	MsG0180006097.01	0.805705	1.173427e-49	6.251209e-47
MsG0180000293.01	MsG0180006106.01	0.814388	1.580716e-51	1.059262e-48
MsG0180000293.01	MsG0180006235.01	0.813501	2.479387e-51	1.621966e-48
MsG0180000293.01	MsG0280006313.01	0.832609	8.572031e-56	9.630134e-53
MsG0180000293.01	MsG0280006356.01	0.827779	1.295417e-54	1.262988e-51
MsG0180000293.01	MsG0280006544.01	0.810500	1.117889e-50	6.749396e-48
MsG0180000293.01	MsG0280006595.01	0.854130	1.511012e-61	3.341176e-58
MsG0180000293.01	MsG0280006728.01	0.816833	4.511172e-52	3.231227e-49
MsG0180000293.01	MsG0280007071.01	0.885126	1.063398e-71	7.211100e-68
MsG0180000293.01	MsG0280007073.01	0.829560	4.807289e-55	4.937434e-52
MsG0180000293.01	MsG0280007088.01	0.831709	1.431516e-55	1.566162e-52
MsG0180000293.01	MsG0280007117.01	0.815527	8.830869e-52	6.103442e-49
MsG0180000293.01	MsG0280007191.01	0.848630	5.424129e-60	1.001543e-56
MsG0180000293.01	MsG0280007253.01	0.812146	4.910495e-51	3.097712e-48
MsG0180000293.01	MsG0280007549.01	0.823477	1.356294e-53	1.169086e-50
MsG0180000293.01	MsG0280007564.01	0.819568	1.084927e-52	8.379194e-50
MsG0180000293.01	MsG0280007585.01	0.840866	6.715682e-58	9.694164e-55
MsG0180000293.01	MsG0280007609.01	0.802042	6.767138e-49	3.281564e-46
MsG0180000293.01	MsG0280007648.01	0.847827	9.036310e-60	1.626191e-56
MsG0180000293.01	MsG0280007715.01	0.848005	8.073034e-60	1.460909e-56
MsG0180000293.01	MsG0280007815.01	0.804909	1.722689e-49	8.991701e-47
MsG0180000293.01	MsG0280007957.01	0.801136	1.038363e-48	4.921375e-46
MsG0180000293.01	MsG0280008039.01	0.808340	3.250390e-50	1.853770e-47
MsG0180000293.01	MsG0280008286.01	0.838438	2.875488e-57	3.851551e-54
MsG0180000293.01	MsG0280008327.01	0.832425	9.520687e-56	1.063734e-52
MsG0180000293.01	MsG0280008502.01	0.817587	3.052982e-52	2.232353e-49
MsG0180000293.01	MsG0280008556.01	0.809948	1.470100e-50	8.748599e-48
MsG0180000293.01	MsG0280008907.01	0.819007	1.455699e-52	1.107024e-49
MsG0180000293.01	MsG0280008971.01	0.801214	1.000864e-48	4.752810e-46
MsG0180000293.01	MsG0280009140.01	0.801091	1.060141e-48	5.019110e-46
MsG0180000293.01	MsG0280009235.01	0.835252	1.870054e-56	2.274273e-53
MsG0180000293.01	MsG0280010196.01	0.814886	1.225827e-51	8.324737e-49
MsG0180000293.01	MsG0280010389.01	0.858466	8.081226e-63	2.064399e-59
MsG0180000293.01	MsG0280010416.01	0.851868	6.705603e-61	1.375778e-57
MsG0180000293.01	MsG0280010447.01	0.830225	3.310263e-55	3.466443e-52
MsG0180000293.01	MsG0280010561.01	0.850999	1.180890e-60	2.356261e-57
MsG0180000293.01	MsG0280010614.01	0.805345	1.396406e-49	7.369937e-47
MsG0180000293.01	MsG0280011070.01	0.815669	8.213933e-52	5.699181e-49
MsG0180000293.01	MsG0280011086.01	0.819343	1.220456e-52	9.365951e-50
MsG0180000293.01	MsG0280011141.01	0.806901	6.566661e-50	3.606820e-47
MsG0180000293.01	MsG0280011220.01	0.821146	4.715408e-53	3.805241e-50
MsG0180000293.01	MsG0280011235.01	0.849996	2.258395e-60	4.360128e-57
MsG0180000293.01	MsG0280011446.01	0.828827	7.239342e-55	7.277134e-52
MsG0180000293.01	MsG0280011457.01	0.854917	8.943053e-62	2.029141e-58
MsG0180000293.01	MsG0380011729.01	0.810853	9.373069e-51	5.713237e-48
MsG0180000293.01	MsG0380011754.01	0.836398	9.580638e-57	1.205881e-53
MsG0180000293.01	MsG0380012124.01	0.826832	2.184518e-54	2.071884e-51
MsG0180000293.01	MsG0380014151.01	0.802885	4.536719e-49	2.247785e-46
MsG0180000293.01	MsG0380014259.01	0.840159	1.028712e-57	1.452787e-54
MsG0180000293.01	MsG0380014330.01	0.808080	3.691625e-50	2.090974e-47
MsG0180000293.01	MsG0380014365.01	0.879897	8.561366e-70	4.724346e-66
MsG0180000293.01	MsG0380014539.01	0.804986	1.660144e-49	8.681588e-47
MsG0180000293.01	MsG0380014541.01	0.843220	1.601739e-58	2.488718e-55
MsG0180000293.01	MsG0380014561.01	0.838302	3.117331e-57	4.157597e-54
MsG0180000293.01	MsG0380015181.01	0.855404	6.453081e-62	1.488273e-58
MsG0180000293.01	MsG0380015564.01	0.825014	5.906027e-54	5.318973e-51
MsG0180000293.01	MsG0380015713.01	0.808517	2.978847e-50	1.706767e-47
MsG0180000293.01	MsG0380015922.01	0.844279	8.339222e-59	1.339582e-55
MsG0180000293.01	MsG0380016348.01	0.810814	9.557209e-51	5.819127e-48
MsG0180000293.01	MsG0380016581.01	0.800208	1.605568e-48	7.432334e-46
MsG0180000293.01	MsG0380016752.01	0.818360	2.041688e-52	1.525084e-49
MsG0180000293.01	MsG0380017140.01	0.804726	1.880858e-49	9.770781e-47
MsG0180000293.01	MsG0380017285.01	0.848013	8.034378e-60	1.454208e-56
MsG0180000293.01	MsG0380017403.01	0.854947	8.764197e-62	1.990539e-58
MsG0180000293.01	MsG0380017719.01	0.801406	9.141182e-49	4.361935e-46
MsG0180000293.01	MsG0380017998.01	0.809530	1.808214e-50	1.064254e-47
MsG0180000293.01	MsG0480018126.01	0.880044	7.586870e-70	4.211863e-66
MsG0180000293.01	MsG0480018160.01	0.846196	2.527563e-59	4.316171e-56
MsG0180000293.01	MsG0480018333.01	0.838619	2.581659e-57	3.477216e-54
MsG0180000293.01	MsG0480018462.01	0.826367	2.819758e-54	2.639183e-51
MsG0180000293.01	MsG0480019816.01	0.871003	9.515741e-67	3.777864e-63
MsG0180000293.01	MsG0480020065.01	0.866956	1.950853e-65	6.696407e-62
MsG0180000293.01	MsG0480020090.01	0.859306	4.531067e-63	1.191221e-59
MsG0180000293.01	MsG0480020372.01	0.809694	1.667529e-50	9.857448e-48
MsG0180000293.01	MsG0480020416.01	0.857870	1.215315e-62	3.043190e-59
MsG0180000293.01	MsG0480020445.01	0.819760	9.806100e-53	7.614413e-50
MsG0180000293.01	MsG0480020791.01	0.846295	2.376528e-59	4.071308e-56
MsG0180000293.01	MsG0480021240.01	0.842462	2.548075e-58	3.866684e-55
MsG0180000293.01	MsG0480021298.01	0.841244	5.343865e-58	7.803941e-55
MsG0180000293.01	MsG0480021695.01	0.837438	5.199074e-57	6.753388e-54
MsG0180000293.01	MsG0480021731.01	0.821812	3.308764e-53	2.720543e-50
MsG0180000293.01	MsG0480021772.01	0.835104	2.037216e-56	2.466102e-53
MsG0180000293.01	MsG0480021842.01	0.807921	3.990151e-50	2.250557e-47
MsG0180000293.01	MsG0480021953.01	0.844724	6.331588e-59	1.031459e-55
MsG0180000293.01	MsG0480022104.01	0.814558	1.449595e-51	9.758225e-49
MsG0180000293.01	MsG0480022146.01	0.800860	1.182270e-48	5.564349e-46
MsG0180000293.01	MsG0480022183.01	0.841929	3.525701e-58	5.260537e-55
MsG0180000293.01	MsG0480022467.01	0.819249	1.282451e-52	9.817009e-50
MsG0180000293.01	MsG0480022480.01	0.864587	1.092300e-64	3.447746e-61
MsG0180000293.01	MsG0480022551.01	0.817269	3.599148e-52	2.608876e-49
MsG0180000293.01	MsG0480022678.01	0.826619	2.455660e-54	2.314852e-51
MsG0180000293.01	MsG0480022717.01	0.817001	4.135282e-52	2.975874e-49
MsG0180000293.01	MsG0480022922.01	0.833589	4.889179e-56	5.655911e-53
MsG0180000293.01	MsG0480022971.01	0.826948	2.049581e-54	1.950599e-51
MsG0180000293.01	MsG0480023014.01	0.856230	3.701253e-62	8.772675e-59
MsG0180000293.01	MsG0480023088.01	0.838245	3.223936e-57	4.292366e-54
MsG0180000293.01	MsG0480023224.01	0.868112	8.315155e-66	2.973052e-62
MsG0180000293.01	MsG0480023245.01	0.846339	2.311690e-59	3.965858e-56
MsG0180000293.01	MsG0480023270.01	0.805840	1.099263e-49	5.876238e-47
MsG0180000293.01	MsG0480023412.01	0.818730	1.682777e-52	1.269791e-49
MsG0180000293.01	MsG0480023517.01	0.825649	4.176942e-54	3.830212e-51
MsG0180000293.01	MsG0480023733.01	0.817277	3.585085e-52	2.599198e-49
MsG0180000293.01	MsG0480023847.01	0.827721	1.337617e-54	1.302014e-51
MsG0180000293.01	MsG0580024353.01	0.845958	2.934021e-59	4.972747e-56
MsG0180000293.01	MsG0580024575.01	0.831383	1.722446e-55	1.866117e-52
MsG0180000293.01	MsG0580024618.01	0.822354	2.478172e-53	2.069316e-50
MsG0180000293.01	MsG0580025115.01	0.849693	2.745679e-60	5.248606e-57
MsG0180000293.01	MsG0580025134.01	0.848530	5.779495e-60	1.063840e-56
MsG0180000293.01	MsG0580025143.01	0.809427	1.902920e-50	1.116941e-47
MsG0180000293.01	MsG0580025489.01	0.825122	5.568147e-54	5.029956e-51
MsG0180000293.01	MsG0580025749.01	0.814649	1.383231e-51	9.334546e-49
MsG0180000293.01	MsG0580025989.01	0.898129	7.179102e-77	8.375896e-73
MsG0180000293.01	MsG0580026225.01	0.815102	1.097958e-51	7.499988e-49
MsG0180000293.01	MsG0580026533.01	0.827712	1.344939e-54	1.308772e-51
MsG0180000293.01	MsG0580027129.01	0.807161	5.786822e-50	3.199987e-47
MsG0180000293.01	MsG0580027345.01	0.879426	1.258461e-69	6.820553e-66
MsG0180000293.01	MsG0580028185.01	0.869908	2.175528e-66	8.302880e-63
MsG0180000293.01	MsG0580029189.01	0.835982	1.222019e-56	1.518977e-53
MsG0180000293.01	MsG0580029594.01	0.818009	2.450704e-52	1.812864e-49
MsG0180000293.01	MsG0580029658.01	0.857110	2.040846e-62	4.981538e-59
MsG0180000293.01	MsG0580029661.01	0.883105	5.945811e-71	3.719086e-67
MsG0180000293.01	MsG0580029762.01	0.811535	6.669779e-51	4.139253e-48
MsG0180000293.01	MsG0580030235.01	0.835626	1.504187e-56	1.849658e-53
MsG0180000293.01	MsG0680030684.01	0.809539	1.800349e-50	1.059877e-47
MsG0180000293.01	MsG0680030685.01	0.834963	2.211039e-56	2.665716e-53
MsG0180000293.01	MsG0680030841.01	0.811858	5.672239e-51	3.550313e-48
MsG0180000293.01	MsG0680031538.01	0.823437	1.386045e-53	1.193333e-50
MsG0180000293.01	MsG0680031651.01	0.826495	2.629674e-54	2.470008e-51
MsG0180000293.01	MsG0680033971.01	0.826365	2.823656e-54	2.642576e-51
MsG0180000293.01	MsG0680034037.01	0.803809	2.920193e-49	1.481495e-46
MsG0180000293.01	MsG0680034061.01	0.815013	1.148714e-51	7.828534e-49
MsG0180000293.01	MsG0680035740.01	0.824046	9.976874e-54	8.738681e-51
MsG0180000293.01	MsG0680035777.01	0.845225	4.636605e-59	7.674105e-56
MsG0180000293.01	MsG0780037515.01	0.817633	2.980589e-52	2.182186e-49
MsG0180000293.01	MsG0780037895.01	0.871537	6.339095e-67	2.566181e-63
MsG0180000293.01	MsG0780038444.01	0.803898	2.798781e-49	1.423231e-46
MsG0180000293.01	MsG0780038911.01	0.803400	3.549711e-49	1.782113e-46
MsG0180000293.01	MsG0780039354.01	-0.834687	2.594364e-56	3.101384e-53
MsG0180000293.01	MsG0780039452.01	0.826094	3.276266e-54	3.042452e-51
MsG0180000293.01	MsG0780039900.01	0.803137	4.024304e-49	2.006672e-46
MsG0180000293.01	MsG0780039985.01	0.803337	3.657954e-49	1.833388e-46
MsG0180000293.01	MsG0780040312.01	0.809405	1.923159e-50	1.128188e-47
MsG0180000293.01	MsG0780040360.01	0.889568	2.155332e-73	1.748304e-69
MsG0180000293.01	MsG0780040411.01	0.817098	3.932404e-52	2.837196e-49
MsG0180000293.01	MsG0780040442.01	0.860492	1.988542e-63	5.445954e-60
MsG0180000293.01	MsG0780040691.01	0.895072	1.355796e-75	1.384985e-71
MsG0180000293.01	MsG0780040845.01	0.817126	3.876932e-52	2.799265e-49
MsG0180000293.01	MsG0780040861.01	0.813301	2.743796e-51	1.785088e-48
MsG0180000293.01	MsG0780040929.01	0.801375	9.274544e-49	4.422195e-46
MsG0180000293.01	MsG0780041357.01	0.801984	6.955920e-49	3.368035e-46
MsG0180000293.01	MsG0780041370.01	0.803023	4.247499e-49	2.111773e-46
MsG0180000293.01	MsG0780041399.01	0.862120	6.347083e-64	1.838022e-60
MsG0180000293.01	MsG0780041469.01	0.811177	7.975517e-51	4.902972e-48
MsG0180000293.01	MsG0780041490.01	0.840157	1.029491e-57	1.453824e-54
MsG0180000293.01	MsG0780041498.01	0.815561	8.678265e-52	6.003530e-49
MsG0180000293.01	MsG0780041754.01	0.882114	1.366844e-70	8.220915e-67
MsG0180000293.01	MsG0780041796.01	0.811736	6.029667e-51	3.761947e-48
MsG0180000293.01	MsG0880041883.01	0.850869	1.284585e-60	2.551954e-57
MsG0180000293.01	MsG0880041969.01	0.857520	1.543358e-62	3.819892e-59
MsG0180000293.01	MsG0880042052.01	0.843734	1.167711e-58	1.844103e-55
MsG0180000293.01	MsG0880042811.01	0.845509	3.885899e-59	6.490508e-56
MsG0180000293.01	MsG0880042843.01	0.809984	1.444371e-50	8.603811e-48
MsG0180000293.01	MsG0880042848.01	0.830763	2.445148e-55	2.600923e-52
MsG0180000293.01	MsG0880042967.01	0.806138	9.514112e-50	5.124700e-47
MsG0180000293.01	MsG0880042972.01	0.845575	3.727347e-59	6.238882e-56
MsG0180000293.01	MsG0880043001.01	0.814799	1.281427e-51	8.682478e-49
MsG0180000293.01	MsG0880043082.01	0.860123	2.571200e-63	6.953673e-60
MsG0180000293.01	MsG0880043465.01	0.825356	4.900924e-54	4.456638e-51
MsG0180000293.01	MsG0880043745.01	0.875030	4.246231e-68	1.953869e-64
MsG0180000293.01	MsG0880043804.01	0.801827	7.492971e-49	3.613794e-46
MsG0180000293.01	MsG0880044075.01	0.803309	3.706608e-49	1.856438e-46
MsG0180000293.01	MsG0880044546.01	0.805744	1.151462e-49	6.140346e-47
MsG0180000293.01	MsG0880044917.01	0.802345	5.864202e-49	2.865819e-46
MsG0180000293.01	MsG0880045106.01	0.846427	2.187482e-59	3.764017e-56
MsG0180000293.01	MsG0880045118.01	0.825651	4.173571e-54	3.827317e-51
MsG0180000293.01	MsG0880045619.01	0.814505	1.489192e-51	1.001101e-48
MsG0180000293.01	MsG0880046047.01	0.840909	6.544200e-58	9.459321e-55
MsG0180000293.01	MsG0880046058.01	0.819577	1.079409e-52	8.338984e-50
MsG0180000293.01	MsG0880046077.01	0.835920	1.266597e-56	1.571397e-53
MsG0180000293.01	MsG0880046113.01	0.845728	3.388943e-59	5.701261e-56
MsG0180000293.01	MsG0880046214.01	0.853920	1.737110e-61	3.813823e-58
MsG0180000293.01	MsG0880046317.01	0.846992	1.532304e-59	2.684765e-56
MsG0180000293.01	MsG0880046329.01	0.817917	2.571963e-52	1.897782e-49
MsG0180000293.01	MsG0880046532.01	0.840541	8.170052e-58	1.167509e-54
MsG0180000293.01	MsG0880046733.01	0.871310	7.533849e-67	3.025232e-63
MsG0180000293.01	MsG0880046753.01	0.803955	2.722914e-49	1.386694e-46
MsG0180000293.01	MsG0880047016.01	0.821515	3.875458e-53	3.159575e-50
MsG0180000293.01	MsG0880047148.01	0.808287	3.335903e-50	1.899875e-47
MsG0180000293.01	MsG0880047191.01	0.819542	1.099439e-52	8.485301e-50
MsG0180000293.01	MsG0880047497.01	0.837584	4.769127e-57	6.223001e-54
MsG0180000293.01	MsG0880047590.01	0.880388	5.719254e-70	3.216341e-66
MsG0180000293.01	MsG0880047742.01	0.805831	1.103701e-49	5.898635e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000293.01.T01	MTR_1g018790	97.351	151	4	0	1	151	379	529	2.83e-99	296
MsG0180000293.01.T01	MTR_4g094932	47.297	148	77	1	2	148	365	512	4.17e-36	130
MsG0180000293.01.T02	MTR_1g018790	96.078	102	4	0	1	102	428	529	5.34e-53	174
MsG0180000293.01.T02	MTR_4g094932	40.000	100	59	1	1	99	413	512	2.81e-15	70.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000293.01.T01	AT4G07400	61.644	146	54	1	2	147	390	533	1.42e-49	167
MsG0180000293.01.T01	AT1G47056	58.170	153	60	2	1	151	356	506	1.10e-47	161
MsG0180000293.01.T01	AT5G67250	50.658	152	70	2	2	151	361	509	1.89e-30	115
MsG0180000293.01.T01	AT3G50080	46.405	153	77	2	2	151	355	505	3.48e-28	108
MsG0180000293.01.T02	AT4G07400	56.122	98	41	1	1	98	438	533	4.61e-24	95.5
MsG0180000293.01.T02	AT1G47056	50.000	104	48	2	1	102	405	506	3.81e-20	84.3

Find 47 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACCTTCACTTTCACCAAAT+TGG	0.167556	1:+4062461	None:intergenic
AGTTGTCCTGTTTCTGATCT+TGG	0.260446	1:-4062510	MsG0180000293.01.T01:CDS
GCCGCGGAGCCGGGCATTGC+AGG	0.275184	1:+4062291	None:intergenic
GGCAAATGGGTGTCCCAATT+TGG	0.327661	1:-4062475	MsG0180000293.01.T01:CDS
ACCTTCACTTTCACCAAATT+GGG	0.329278	1:+4062462	None:intergenic
TGATCTTGGGATGGAAGCTT+TGG	0.344571	1:-4062496	MsG0180000293.01.T01:CDS
GTTGTCCTGTTTCTGATCTT+GGG	0.350129	1:-4062509	MsG0180000293.01.T01:CDS
TTGCATTGCTGCAAAGTGTT+TGG	0.356470	1:-4062556	MsG0180000293.01.T01:CDS
CTCAACCAATCCCCACCTTC+AGG	0.369729	1:+4062417	None:intergenic
AGTTCATTCAAGCAAAGGTT+AGG	0.388373	1:-4062225	MsG0180000293.01.T01:CDS
GGGATTGGTTGAGGCACACT+AGG	0.389313	1:-4062407	MsG0180000293.01.T01:CDS
AAAGCCAATCTCTCTAGATT+CGG	0.392075	1:+4062615	None:intergenic
GGGATGGAAGCTTTGGCAAA+TGG	0.408413	1:-4062489	MsG0180000293.01.T01:CDS
CGATGTAGATGCCGCGGAGC+CGG	0.410875	1:+4062281	None:intergenic
GGTTTCTGTAGCTGTGAATC+TGG	0.425023	1:-4062385	MsG0180000293.01.T01:CDS
GATGTAGATGCCGCGGAGCC+GGG	0.436914	1:+4062282	None:intergenic
TTACACCTGAAGGTGGGGAT+TGG	0.440333	1:-4062422	MsG0180000293.01.T01:CDS
TTGCCCGAATCTAGAGAGAT+TGG	0.454730	1:-4062619	MsG0180000293.01.T01:CDS
TCCTGTTTCTGATCTTGGGA+TGG	0.465939	1:-4062505	MsG0180000293.01.T01:CDS
GGATGGAAGCTTTGGCAAAT+GGG	0.471037	1:-4062488	MsG0180000293.01.T01:CDS
TCCATCCCAAGATCAGAAAC+AGG	0.475671	1:+4062504	None:intergenic
AGTGAAGGTCAAGAAGTGTA+AGG	0.477496	1:-4062448	MsG0180000293.01.T01:CDS
ATTGAATTTCCTGCAATGCC+CGG	0.481428	1:-4062300	MsG0180000293.01.T01:CDS
AAGCCAATCTCTCTAGATTC+GGG	0.481744	1:+4062616	None:intergenic
GATGGTGGAGCACAAGAGAA+TGG	0.489500	1:-4062324	MsG0180000293.01.T01:CDS
GATCGAGTTCATTCAAGCAA+AGG	0.510836	1:-4062230	MsG0180000293.01.T01:CDS
GCAGCAATGCAAGATATCTC+AGG	0.514016	1:+4062567	None:intergenic
CGGCTCCGCGGCATCTACAT+CGG	0.517144	1:-4062280	MsG0180000293.01.T01:CDS
ATGGTGGAGCACAAGAGAAT+GGG	0.527565	1:-4062323	MsG0180000293.01.T01:CDS
CTGAAGGTGGGGATTGGTTG+AGG	0.528050	1:-4062416	MsG0180000293.01.T01:CDS
TCCTGCAATGCCCGGCTCCG+CGG	0.534211	1:-4062292	MsG0180000293.01.T01:CDS
GGATTGGTTGAGGCACACTA+GGG	0.546523	1:-4062406	MsG0180000293.01.T01:CDS
GTTCATTCAAGCAAAGGTTA+GGG	0.551510	1:-4062224	MsG0180000293.01.T01:CDS
CAAAGGTTAGGGCTACTGTC+CGG	0.585207	1:-4062213	MsG0180000293.01.T01:CDS
AGGGTGTTACACCTGAAGGT+GGG	0.590987	1:-4062428	MsG0180000293.01.T01:CDS
GTGAAGGTCAAGAAGTGTAA+GGG	0.606922	1:-4062447	MsG0180000293.01.T01:CDS
TGTAAGGGTGTTACACCTGA+AGG	0.612165	1:-4062432	MsG0180000293.01.T01:CDS
GATGCTAGTGCTAGTGATGG+TGG	0.613432	1:-4062339	MsG0180000293.01.T01:CDS
TGTAGCTGTGAATCTGGACG+CGG	0.617383	1:-4062379	MsG0180000293.01.T01:CDS
TACTGTCCGGAGGAAAATTG+TGG	0.618876	1:-4062200	MsG0180000293.01.T01:CDS
GGGTGTTACACCTGAAGGTG+GGG	0.621074	1:-4062427	MsG0180000293.01.T01:CDS
TCCCAATTTGGTGAAAGTGA+AGG	0.632374	1:-4062463	MsG0180000293.01.T01:CDS
TTGTGTGCAAGTGATACTGT+TGG	0.633448	1:-4062594	MsG0180000293.01.T01:CDS
AAGGGTGTTACACCTGAAGG+TGG	0.641667	1:-4062429	MsG0180000293.01.T01:CDS
ATTTGCCGATGTAGATGCCG+CGG	0.660814	1:+4062275	None:intergenic
AGGTTAGGGCTACTGTCCGG+AGG	0.681434	1:-4062210	MsG0180000293.01.T01:CDS
CAAGATGCTAGTGCTAGTGA+TGG	0.682263	1:-4062342	MsG0180000293.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AAAGCCAATCTCTCTAGATT+CGG	+	Chr1:4062209-4062228	None:intergenic	35.0%
	ACCTTCACTTTCACCAAATT+GGG	+	Chr1:4062362-4062381	None:intergenic	35.0%
	AGTTCATTCAAGCAAAGGTT+AGG	-	Chr1:4062596-4062615	MsG0180000293.01.T01:CDS	35.0%
	GTTCATTCAAGCAAAGGTTA+GGG	-	Chr1:4062597-4062616	MsG0180000293.01.T01:CDS	35.0%
	AAGCCAATCTCTCTAGATTC+GGG	+	Chr1:4062208-4062227	None:intergenic	40.0%
	ATTGAATTTCCTGCAATGCC+CGG	-	Chr1:4062521-4062540	MsG0180000293.01.T01:CDS	40.0%
	GACCTTCACTTTCACCAAAT+TGG	+	Chr1:4062363-4062382	None:intergenic	40.0%
	GATCGAGTTCATTCAAGCAA+AGG	-	Chr1:4062591-4062610	MsG0180000293.01.T01:CDS	40.0%
	TTGTGTGCAAGTGATACTGT+TGG	-	Chr1:4062227-4062246	MsG0180000293.01.T01:CDS	40.0%
!	AGTGAAGGTCAAGAAGTGTA+AGG	-	Chr1:4062373-4062392	MsG0180000293.01.T01:CDS	40.0%
!	GTGAAGGTCAAGAAGTGTAA+GGG	-	Chr1:4062374-4062393	MsG0180000293.01.T01:CDS	40.0%
!	TCCCAATTTGGTGAAAGTGA+AGG	-	Chr1:4062358-4062377	MsG0180000293.01.T01:CDS	40.0%
!	TTGCATTGCTGCAAAGTGTT+TGG	-	Chr1:4062265-4062284	MsG0180000293.01.T01:CDS	40.0%
!!	AGTTGTCCTGTTTCTGATCT+TGG	-	Chr1:4062311-4062330	MsG0180000293.01.T01:CDS	40.0%
!!	GTTGTCCTGTTTCTGATCTT+GGG	-	Chr1:4062312-4062331	MsG0180000293.01.T01:CDS	40.0%
	CAAGATGCTAGTGCTAGTGA+TGG	-	Chr1:4062479-4062498	MsG0180000293.01.T01:CDS	45.0%
	GCAGCAATGCAAGATATCTC+AGG	+	Chr1:4062257-4062276	None:intergenic	45.0%
	GGTTTCTGTAGCTGTGAATC+TGG	-	Chr1:4062436-4062455	MsG0180000293.01.T01:CDS	45.0%
	TACTGTCCGGAGGAAAATTG+TGG	-	Chr1:4062621-4062640	MsG0180000293.01.T01:CDS	45.0%
	TCCATCCCAAGATCAGAAAC+AGG	+	Chr1:4062320-4062339	None:intergenic	45.0%
	TGATCTTGGGATGGAAGCTT+TGG	-	Chr1:4062325-4062344	MsG0180000293.01.T01:CDS	45.0%
	TTGCCCGAATCTAGAGAGAT+TGG	-	Chr1:4062202-4062221	MsG0180000293.01.T01:CDS	45.0%
!	ATGGTGGAGCACAAGAGAAT+GGG	-	Chr1:4062498-4062517	MsG0180000293.01.T01:CDS	45.0%
!	GGATGGAAGCTTTGGCAAAT+GGG	-	Chr1:4062333-4062352	MsG0180000293.01.T01:CDS	45.0%
!	TGCTAGCCACAATTTTCCTC+CGG	+	Chr1:4062630-4062649	None:intergenic	45.0%
!!	TCCTGTTTCTGATCTTGGGA+TGG	-	Chr1:4062316-4062335	MsG0180000293.01.T01:CDS	45.0%
!!	TGTAAGGGTGTTACACCTGA+AGG	-	Chr1:4062389-4062408	MsG0180000293.01.T01:CDS	45.0%
	ATTTGCCGATGTAGATGCCG+CGG	+	Chr1:4062549-4062568	None:intergenic	50.0%
	CAAAGGTTAGGGCTACTGTC+CGG	-	Chr1:4062608-4062627	MsG0180000293.01.T01:CDS	50.0%
	GATGCTAGTGCTAGTGATGG+TGG	-	Chr1:4062482-4062501	MsG0180000293.01.T01:CDS	50.0%
	GGCAAATGGGTGTCCCAATT+TGG	-	Chr1:4062346-4062365	MsG0180000293.01.T01:CDS	50.0%
	TGTAGCTGTGAATCTGGACG+CGG	-	Chr1:4062442-4062461	MsG0180000293.01.T01:CDS	50.0%
	TTACACCTGAAGGTGGGGAT+TGG	-	Chr1:4062399-4062418	MsG0180000293.01.T01:CDS	50.0%
!	AGGGTGTTACACCTGAAGGT+GGG	-	Chr1:4062393-4062412	MsG0180000293.01.T01:CDS	50.0%
!	GGGATGGAAGCTTTGGCAAA+TGG	-	Chr1:4062332-4062351	MsG0180000293.01.T01:CDS	50.0%
!!	AAGGGTGTTACACCTGAAGG+TGG	-	Chr1:4062392-4062411	MsG0180000293.01.T01:CDS	50.0%
!!	GATGGTGGAGCACAAGAGAA+TGG	-	Chr1:4062497-4062516	MsG0180000293.01.T01:CDS	50.0%
!!	GGATTGGTTGAGGCACACTA+GGG	-	Chr1:4062415-4062434	MsG0180000293.01.T01:CDS	50.0%
	CTCAACCAATCCCCACCTTC+AGG	+	Chr1:4062407-4062426	None:intergenic	55.0%
!	GGGTGTTACACCTGAAGGTG+GGG	-	Chr1:4062394-4062413	MsG0180000293.01.T01:CDS	55.0%
!!	CTGAAGGTGGGGATTGGTTG+AGG	-	Chr1:4062405-4062424	MsG0180000293.01.T01:CDS	55.0%
!!	GGGATTGGTTGAGGCACACT+AGG	-	Chr1:4062414-4062433	MsG0180000293.01.T01:CDS	55.0%
	AGGTTAGGGCTACTGTCCGG+AGG	-	Chr1:4062611-4062630	MsG0180000293.01.T01:CDS	60.0%
	CGATGTAGATGCCGCGGAGC+CGG	+	Chr1:4062543-4062562	None:intergenic	65.0%
	CGGCTCCGCGGCATCTACAT+CGG	-	Chr1:4062541-4062560	MsG0180000293.01.T01:CDS	65.0%
	GATGTAGATGCCGCGGAGCC+GGG	+	Chr1:4062542-4062561	None:intergenic	65.0%
	TCCTGCAATGCCCGGCTCCG+CGG	-	Chr1:4062529-4062548	MsG0180000293.01.T01:CDS	70.0%
!!	GCCGCGGAGCCGGGCATTGC+AGG	+	Chr1:4062533-4062552	None:intergenic	80.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	4062188	4062655	4062188	ID=MsG0180000293.01;Name=MsG0180000293.01
Chr1	mRNA	4062188	4062655	4062188	ID=MsG0180000293.01.T01;Parent=MsG0180000293.01;Name=MsG0180000293.01.T01;_AED=0.40;_eAED=0.40;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|155
Chr1	exon	4062188	4062655	4062188	ID=MsG0180000293.01.T01:exon:5753;Parent=MsG0180000293.01.T01
Chr1	CDS	4062188	4062655	4062188	ID=MsG0180000293.01.T01:cds;Parent=MsG0180000293.01.T01
Chr1	mRNA	4062188	4062508	4062188	ID=MsG0180000293.01.T02;Parent=MsG0180000293.01;Name=MsG0180000293.01.T02;_AED=0.43;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|106
Chr1	exon	4062188	4062508	4062188	ID=MsG0180000293.01.T02:exon:5754;Parent=MsG0180000293.01.T02
Chr1	CDS	4062188	4062508	4062188	ID=MsG0180000293.01.T02:cds;Parent=MsG0180000293.01.T02

Gene Sequence

>MsG0180000293.01.T01

ATGTTGGCATCGAATTGCCCGAATCTAGAGAGATTGGCTTTGTGTGCAAGTGATACTGTTGGTGATCCTGAGATATCTTGCATTGCTGCAAAGTGTTTGGCTTTGAAGAAACTTTGCATCAAGAGTTGTCCTGTTTCTGATCTTGGGATGGAAGCTTTGGCAAATGGGTGTCCCAATTTGGTGAAAGTGAAGGTCAAGAAGTGTAAGGGTGTTACACCTGAAGGTGGGGATTGGTTGAGGCACACTAGGGTTTCTGTAGCTGTGAATCTGGACGCGGTTGAAGCAGAACTTCAAGATGCTAGTGCTAGTGATGGTGGAGCACAAGAGAATGGGATTGAATTTCCTGCAATGCCCGGCTCCGCGGCATCTACATCGGCAAATATTGCATCGAGAAGTACTGTTCGATCGAGTTCATTCAAGCAAAGGTTAGGGCTACTGTCCGGAGGAAAATTGTGGCTAGCACTTTGA

>MsG0180000293.01.T02

ATGGAAGCTTTGGCAAATGGGTGTCCCAATTTGGTGAAAGTGAAGGTCAAGAAGTGTAAGGGTGTTACACCTGAAGGTGGGGATTGGTTGAGGCACACTAGGGTTTCTGTAGCTGTGAATCTGGACGCGGTTGAAGCAGAACTTCAAGATGCTAGTGCTAGTGATGGTGGAGCACAAGAGAATGGGATTGAATTTCCTGCAATGCCCGGCTCCGCGGCATCTACATCGGCAAATATTGCATCGAGAAGTACTGTTCGATCGAGTTCATTCAAGCAAAGGTTAGGGCTACTGTCCGGAGGAAAATTGTGGCTAGCACTTTGA

Protein sequence

>MsG0180000293.01.T01

MLASNCPNLERLALCASDTVGDPEISCIAAKCLALKKLCIKSCPVSDLGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRHTRVSVAVNLDAVEAELQDASASDGGAQENGIEFPAMPGSAASTSANIASRSTVRSSSFKQRLGLLSGGKLWLAL*

>MsG0180000293.01.T02

MEALANGCPNLVKVKVKKCKGVTPEGGDWLRHTRVSVAVNLDAVEAELQDASASDGGAQENGIEFPAMPGSAASTSANIASRSTVRSSSFKQRLGLLSGGKLWLAL*