AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022990.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022990.01.T01 MTR_8g080880 87.961 515 62 0 1 515 1 515 0.0 920
MsG0480022990.01.T01 MTR_8g080840 85.687 517 68 2 1 515 3 515 0.0 908
MsG0480022990.01.T01 MTR_8g097220 85.853 516 69 2 1 515 1 513 0.0 905
MsG0480022990.01.T01 MTR_8g080890 86.576 514 68 1 1 513 1 514 0.0 902
MsG0480022990.01.T01 MTR_8g080870 85.421 487 70 1 30 515 1 487 0.0 855
MsG0480022990.01.T01 MTR_4g074030 58.648 503 197 8 13 508 9 507 0.0 560
MsG0480022990.01.T01 MTR_4g073970 57.566 304 117 7 205 499 1 301 1.86e-113 338
MsG0480022990.01.T01 MTR_4g073980 61.871 139 50 2 44 181 26 162 3.97e-48 164
MsG0480022990.01.T01 MTR_8g080850 89.744 78 8 0 438 515 1 78 3.38e-42 145
MsG0480022990.01.T01 MTR_8g095600 31.727 249 155 6 40 287 162 396 1.34e-29 122
MsG0480022990.01.T01 MTR_8g095600 31.727 249 155 6 40 287 162 396 6.28e-29 120
MsG0480022990.01.T01 MTR_8g095600 31.727 249 155 6 40 287 162 396 7.33e-29 120
MsG0480022990.01.T01 MTR_8g095600 31.727 249 155 6 40 287 178 412 7.54e-29 120
MsG0480022990.01.T01 MTR_3g048950 33.086 269 171 5 44 309 46 308 1.44e-26 113
MsG0480022990.01.T01 MTR_2g010180 29.617 287 189 6 32 313 121 399 6.77e-23 102
MsG0480022990.01.T01 MTR_2g010180 29.617 287 189 6 32 313 121 399 7.73e-23 102
MsG0480022990.01.T01 MTR_2g010180 29.617 287 189 6 32 313 135 413 8.16e-23 102
MsG0480022990.01.T01 MTR_3g096980 25.455 495 321 19 40 515 135 600 2.02e-20 95.1
MsG0480022990.01.T01 MTR_1g082750 38.655 119 67 2 140 257 63 176 2.97e-14 75.1
MsG0480022990.01.T01 MTR_8g094740 28.516 256 166 6 26 271 117 365 1.56e-12 70.1
MsG0480022990.01.T01 MTR_8g094740 28.516 256 166 6 26 271 117 365 1.68e-12 70.5
MsG0480022990.01.T01 MTR_4g094205 34.507 142 87 2 138 278 107 243 1.12e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022990.01.T01 AT4G34880 60.887 496 180 5 18 508 22 508 0.0 568
MsG0480022990.01.T01 AT4G34880 53.535 495 172 5 18 508 22 462 3.88e-175 501
MsG0480022990.01.T01 AT5G07360 31.687 243 155 5 40 281 204 436 3.55e-27 116
MsG0480022990.01.T01 AT5G07360 31.687 243 155 5 40 281 204 436 3.55e-27 116
MsG0480022990.01.T01 AT3G25660 32.881 295 181 8 52 340 57 340 1.07e-25 110
MsG0480022990.01.T01 AT5G07360 31.276 243 149 6 40 281 204 429 4.89e-24 106
MsG0480022990.01.T01 AT5G64440 23.705 502 326 15 35 508 125 597 6.00e-20 93.6
MsG0480022990.01.T01 AT1G08980 41.176 119 64 2 140 257 64 177 2.40e-15 78.6
MsG0480022990.01.T01 AT5G09420 38.462 117 66 2 138 253 105 216 2.74e-11 66.6

Find 121 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATATACTCACCAATTT+TGG 0.124167 4:+79480371 None:intergenic
GTGAGACTGTACTACAATTT+TGG 0.196580 4:-79480728 MsG0480022990.01.T01:CDS
GTTGCATGGAATACCTATTT+TGG 0.222876 4:-79482091 MsG0480022990.01.T01:CDS
AAAGTTGGGGCTATCATATT+AGG 0.223239 4:-79481961 MsG0480022990.01.T01:CDS
GTGAAACAACTAAATCTTTC+AGG 0.228755 4:+79480438 None:intergenic
AAAGCAGCAGGTTCTCTTTC+AGG 0.230296 4:-79482114 MsG0480022990.01.T01:CDS
ATGACAAGATGGTCACAAAA+TGG 0.286173 4:-79480189 MsG0480022990.01.T01:CDS
GTGTCTTGCCTTGGGCTAAT+TGG 0.286345 4:+79481061 None:intergenic
CAGGCAAAGAGGTGCAGTTT+TGG 0.290583 4:-79480558 MsG0480022990.01.T01:CDS
TTGATGTTAACTGCTTTCTT+TGG 0.290637 4:+79482259 None:intergenic
TGTAACTAACAGAAGTATTA+TGG 0.292613 4:+79482362 None:intergenic
AATATCAGTAGCAGCAAATT+TGG 0.294381 4:-79481197 MsG0480022990.01.T01:CDS
AATTGAGCATAGCCACCTTT+TGG 0.307622 4:+79480791 None:intergenic
CAACAAGAAACACCCAAAAT+TGG 0.311801 4:-79480384 MsG0480022990.01.T01:intron
ATGTTATCCTTAACCAAAAT+AGG 0.317243 4:+79482078 None:intergenic
CAGCTTGCAGCATGAGATCT+TGG 0.321727 4:+79480259 None:intergenic
ATCTTAATTGTAGGAGAAAA+TGG 0.323871 4:-79480289 MsG0480022990.01.T01:intron
CCATTTGGAATTTGCTTTGG+AGG 0.345917 4:-79480039 MsG0480022990.01.T01:CDS
AAGGATGTTGGAAGCATAGA+AGG 0.345981 4:+79482336 None:intergenic
TACCCAACTGTGTCTTGCCT+TGG 0.349156 4:+79481052 None:intergenic
GCTGAAAAGACAAATGGAAT+TGG 0.352248 4:-79480240 MsG0480022990.01.T01:CDS
TCTGATACGGTCCTGCAAAT+TGG 0.353309 4:+79480890 None:intergenic
ACGCCGCTAAAGTATGAAAA+AGG 0.370786 4:+79480120 None:intergenic
ACCCAACTGTGTCTTGCCTT+GGG 0.375767 4:+79481053 None:intergenic
TGAAAGAGAACCTGCTGCTT+TGG 0.377922 4:+79482116 None:intergenic
ATGCCATTTGGAATTTGCTT+TGG 0.378888 4:-79480042 MsG0480022990.01.T01:CDS
TTTAGCGGCGTACTTGCTAT+TGG 0.387009 4:-79480108 MsG0480022990.01.T01:CDS
TCTAAGACTCCTTTGAGAAC+TGG 0.389957 4:+79482192 None:intergenic
ATCTTTCAGGTATGAGTTCA+AGG 0.394296 4:+79480451 None:intergenic
TATGAAAAGGGCATGCCATT+TGG 0.394570 4:-79480054 MsG0480022990.01.T01:CDS
TCTGCATGTGCTAATGCATC+TGG 0.394818 4:+79482162 None:intergenic
CTTGCTATTGGAGGTTATCC+TGG 0.409552 4:-79480096 MsG0480022990.01.T01:CDS
TAAGGATAACATTGCAACTA+AGG 0.417159 4:-79482067 MsG0480022990.01.T01:CDS
TTAGCAGGTTAAGGAAAGTT+GGG 0.419376 4:-79481975 MsG0480022990.01.T01:CDS
AAGCAGCAGGTTCTCTTTCA+GGG 0.420978 4:-79482113 MsG0480022990.01.T01:CDS
TTCTATGCTTCCAACATCCT+TGG 0.422281 4:-79482334 MsG0480022990.01.T01:CDS
TTGTAGGAGAAAATGGAGTA+TGG 0.423860 4:-79480282 MsG0480022990.01.T01:intron
CTAAGACTCCTTTGAGAACT+GGG 0.435475 4:+79482193 None:intergenic
CTGAAAAGACAAATGGAATT+GGG 0.436484 4:-79480239 MsG0480022990.01.T01:CDS
GTTAGCAGGTTAAGGAAAGT+TGG 0.441622 4:-79481976 MsG0480022990.01.T01:CDS
CTGGCGTAGTTAGCAGGTTA+AGG 0.445156 4:-79481984 MsG0480022990.01.T01:CDS
CAAGGATCATCCAATGTGTA+TGG 0.446045 4:+79481241 None:intergenic
AAGTTGGGGCTATCATATTA+GGG 0.451734 4:-79481960 MsG0480022990.01.T01:CDS
AATTCAGAATACTGCAGTAT+AGG 0.456209 4:-79482453 MsG0480022990.01.T01:five_prime_UTR
CTAACTACGCCAGCATCTCT+TGG 0.471908 4:+79481994 None:intergenic
GCCCAAGGCAAGACACAGTT+GGG 0.473558 4:-79481054 MsG0480022990.01.T01:intron
ACTACTGAGTTCATACTTGA+AGG 0.474985 4:+79481130 None:intergenic
AGTTCTCAAAGGAGTCTTAG+AGG 0.475499 4:-79482190 MsG0480022990.01.T01:CDS
TGACAAGATGGTCACAAAAT+GGG 0.477152 4:-79480188 MsG0480022990.01.T01:CDS
TCAAGTATGAACTCAGTAGT+AGG 0.480266 4:-79481127 MsG0480022990.01.T01:CDS
AGCGGCGTACTTGCTATTGG+AGG 0.487808 4:-79480105 MsG0480022990.01.T01:CDS
TGTTCCAGCAGGATATGAAA+AGG 0.490531 4:-79480067 MsG0480022990.01.T01:CDS
ATTTGCTTTGGAGGTTTGAA+AGG 0.493826 4:-79480030 MsG0480022990.01.T01:CDS
CTGCAAGCTGAAAAGACAAA+TGG 0.495604 4:-79480246 MsG0480022990.01.T01:CDS
GAGATGCTGGCGTAGTTAGC+AGG 0.503203 4:-79481990 MsG0480022990.01.T01:CDS
TCAGTAGTGCCAAGAGATGC+TGG 0.504508 4:-79482003 MsG0480022990.01.T01:CDS
TAAGCAATTTCAATTAACTT+CGG 0.513290 4:+79480000 None:intergenic
GGTTCTCTTTCAGGGTTGCA+TGG 0.513466 4:-79482105 MsG0480022990.01.T01:CDS
TTTGTATATTGATTTGGTTG+AGG 0.514206 4:+79482217 None:intergenic
CTAAAGAAAGACGGACTAAG+AGG 0.516133 4:-79480767 MsG0480022990.01.T01:CDS
CCTGGAGTCATTGTTCCAGC+AGG 0.517601 4:-79480078 MsG0480022990.01.T01:CDS
GCATCAAAGTATATCCCAAA+AGG 0.517964 4:-79480806 MsG0480022990.01.T01:CDS
CATACTTGAAGGGCATAAGA+TGG 0.523653 4:+79481141 None:intergenic
CTTCCAACATCCTTGGCTAG+TGG 0.524164 4:-79482327 MsG0480022990.01.T01:CDS
AATACTGCAGTATAGGTACT+AGG 0.533031 4:-79482446 MsG0480022990.01.T01:five_prime_UTR
TCTGATGTGACCACTCACTC+AGG 0.535215 4:+79481929 None:intergenic
CCTCCAAAGCAAATTCCAAA+TGG 0.541500 4:+79480039 None:intergenic
GAGAGAAGGACCAAAGCAGC+AGG 0.543175 4:-79482126 MsG0480022990.01.T01:CDS
CTACTGAGTTCATACTTGAA+GGG 0.545399 4:+79481131 None:intergenic
GATCCTTGTGGTTCAAGTAG+TGG 0.552399 4:-79481226 MsG0480022990.01.T01:CDS
GATAAGCTAAACACTACTGC+AGG 0.552473 4:-79482045 MsG0480022990.01.T01:CDS
TATGTTCTTGAAACCATAGC+AGG 0.553334 4:-79480860 MsG0480022990.01.T01:CDS
GGCTAGTGGATTCTCAATCA+AGG 0.555061 4:-79482313 MsG0480022990.01.T01:CDS
AGCCCAAGGCAAGACACAGT+TGG 0.555092 4:-79481055 MsG0480022990.01.T01:CDS
CTTTATTGAACATGACAAGA+TGG 0.556585 4:-79480200 MsG0480022990.01.T01:CDS
CCTGCTGGAACAATGACTCC+AGG 0.556829 4:+79480078 None:intergenic
GTTGGTCTCACTAGTAGAGC+AGG 0.557670 4:-79481091 MsG0480022990.01.T01:CDS
AATCCACTAGCCAAGGATGT+TGG 0.560632 4:+79482324 None:intergenic
CTAGTGAAGCTCCTAGTGGT+TGG 0.561059 4:-79481903 MsG0480022990.01.T01:CDS
TCTAACTTTCGAAGCGGAGG+GGG 0.561714 4:+79479946 None:intergenic
GTTCCAGCAGGATATGAAAA+GGG 0.561856 4:-79480066 MsG0480022990.01.T01:CDS
TGCTAGAGGTGGACAAGGAA+AGG 0.563245 4:-79481878 MsG0480022990.01.T01:intron
TTTGTCAAAATCAGGCAAAG+AGG 0.571847 4:-79480569 MsG0480022990.01.T01:intron
AACATAAGCAGCATCTGATA+CGG 0.572591 4:+79480877 None:intergenic
TAAAGCGTCTATGCCTGCTA+TGG 0.572957 4:+79480847 None:intergenic
CTTCTAACTTTCGAAGCGGA+GGG 0.575136 4:+79479944 None:intergenic
GTTTCAACTTTCAAGACACA+TGG 0.578997 4:-79482421 MsG0480022990.01.T01:exon
TGTTTCACCAGTGAAAAGCT+TGG 0.582494 4:-79480423 MsG0480022990.01.T01:CDS
GCTCAATTTCTAAAGAAAGA+CGG 0.585283 4:-79480776 MsG0480022990.01.T01:CDS
AAGAAATAAACTTGATGCTG+TGG 0.585547 4:-79480148 MsG0480022990.01.T01:CDS
ACTTCTAACTTTCGAAGCGG+AGG 0.591701 4:+79479943 None:intergenic
TTCTAACTTTCGAAGCGGAG+GGG 0.592564 4:+79479945 None:intergenic
GATTGAGAATCCACTAGCCA+AGG 0.599130 4:+79482317 None:intergenic
CTGATGTGACCACTCACTCA+GGG 0.604738 4:+79481930 None:intergenic
TTGTGGTTCAAGTAGTGGAT+CGG 0.605165 4:-79481221 MsG0480022990.01.T01:CDS
ATACAAAACCCAGTTCTCAA+AGG 0.608040 4:-79482201 MsG0480022990.01.T01:CDS
CACACTTCTAACTTTCGAAG+CGG 0.611010 4:+79479940 None:intergenic
GGAAGGCCACCCTGAGTGAG+TGG 0.620599 4:-79481939 MsG0480022990.01.T01:CDS
CCTCTAGCATTCCAACCACT+AGG 0.623602 4:+79481892 None:intergenic
CCTAGTGGTTGGAATGCTAG+AGG 0.624711 4:-79481892 MsG0480022990.01.T01:CDS
AACATTGATCAAATTATCAG+TGG 0.625881 4:-79480515 MsG0480022990.01.T01:CDS
TAGCAGGTTAAGGAAAGTTG+GGG 0.626810 4:-79481974 MsG0480022990.01.T01:CDS
TGGGGCTATCATATTAGGGA+AGG 0.629817 4:-79481956 MsG0480022990.01.T01:CDS
TCAAAGTATATCCCAAAAGG+TGG 0.630247 4:-79480803 MsG0480022990.01.T01:CDS
CTACTAGTGAGACCAACTGT+TGG 0.631026 4:+79481097 None:intergenic
ATAGAGCTGATCAAGAGAGA+AGG 0.635895 4:-79482140 MsG0480022990.01.T01:CDS
CTAACAGAAGTATTATGGAA+AGG 0.639092 4:+79482367 None:intergenic
AGGGCATAAGATGGAGCCGT+CGG 0.639961 4:+79481150 None:intergenic
TGAGTGAGTGGTCACATCAG+AGG 0.640749 4:-79481927 MsG0480022990.01.T01:CDS
TGGAATGCTAGAGGTGGACA+AGG 0.642036 4:-79481883 MsG0480022990.01.T01:CDS
AGGATGTTGGAAGCATAGAA+GGG 0.642867 4:+79482337 None:intergenic
AATTTGGTGACTGTGTCACT+TGG 0.645354 4:-79481181 MsG0480022990.01.T01:CDS
GTAGGCATCAAACCAACAGT+TGG 0.645953 4:-79481109 MsG0480022990.01.T01:CDS
GTGTAATTCCAATTAGCCCA+AGG 0.647537 4:-79481069 MsG0480022990.01.T01:CDS
AGTGGTTGGAATGCTAGAGG+TGG 0.654914 4:-79481889 MsG0480022990.01.T01:CDS
TACACATTGGATGATCCTTG+TGG 0.659008 4:-79481238 MsG0480022990.01.T01:CDS
AGGTCTAGTGAAGCTCCTAG+TGG 0.675570 4:-79481907 MsG0480022990.01.T01:CDS
ATGTGACCACTCACTCAGGG+TGG 0.680087 4:+79481933 None:intergenic
TCACTTGGTACTGAAACCGA+CGG 0.682947 4:-79481166 MsG0480022990.01.T01:CDS
TGTGCAGAATCCATACACAT+TGG 0.705508 4:-79481251 MsG0480022990.01.T01:intron
GATCCACTACTTGAACCACA+AGG 0.767744 4:+79481223 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGACTAAAATATAAGCAAAA+AGG + Chr4:79480900-79480919 None:intergenic 20.0%
!! CTTATACTTATAATTGAGTA+TGG + Chr4:79480762-79480781 None:intergenic 20.0%
!! TAAGCAATTTCAATTAACTT+CGG + Chr4:79482420-79482439 None:intergenic 20.0%
!!! ATATATATACTCACCAATTT+TGG + Chr4:79482049-79482068 None:intergenic 20.0%
!!! ATATGAATTAGTATTGATCA+AGG - Chr4:79482101-79482120 MsG0480022990.01.T01:CDS 20.0%
!!! TATATATACTCACCAATTTT+GGG + Chr4:79482048-79482067 None:intergenic 20.0%
!!! TTATTTTTTGACTTGCAATT+AGG + Chr4:79480943-79480962 None:intergenic 20.0%
! AACATTGATCAAATTATCAG+TGG - Chr4:79481902-79481921 MsG0480022990.01.T01:CDS 25.0%
! AACTCATTTGATATTTCTCT+CGG + Chr4:79481069-79481088 None:intergenic 25.0%
! AGTCTATATATATGGCAAAT+TGG - Chr4:79481388-79481407 MsG0480022990.01.T01:intron 25.0%
! ATACTTATAATTGAGTATGG+AGG + Chr4:79480759-79480778 None:intergenic 25.0%
! ATCTTAATTGTAGGAGAAAA+TGG - Chr4:79482128-79482147 MsG0480022990.01.T01:CDS 25.0%
! ATGAATGATTCTTGAAAATG+AGG - Chr4:79481120-79481139 MsG0480022990.01.T01:CDS 25.0%
! ATGTTATCCTTAACCAAAAT+AGG + Chr4:79480342-79480361 None:intergenic 25.0%
! GCAGAAGAAAATAAACAAAA+GGG + Chr4:79482081-79482100 None:intergenic 25.0%
! TACACACAAACTAAAAATAG+TGG - Chr4:79480790-79480809 MsG0480022990.01.T01:CDS 25.0%
! TACTTATAATTGAGTATGGA+GGG + Chr4:79480758-79480777 None:intergenic 25.0%
! TGCAGAAGAAAATAAACAAA+AGG + Chr4:79482082-79482101 None:intergenic 25.0%
!! ATAGATAAATGTCTTTTGAC+AGG + Chr4:79481469-79481488 None:intergenic 25.0%
!! CATATTCTTTTGTCAAAATC+AGG - Chr4:79481840-79481859 MsG0480022990.01.T01:intron 25.0%
!! TAGATAAATGTCTTTTGACA+GGG + Chr4:79481468-79481487 None:intergenic 25.0%
!!! TGTAACTAACAGAAGTATTA+TGG + Chr4:79480058-79480077 None:intergenic 25.0%
!!! TTTGTATATTGATTTGGTTG+AGG + Chr4:79480203-79480222 None:intergenic 25.0%
AAAAAGGTAGTCATATTTGG+TGG + Chr4:79480884-79480903 None:intergenic 30.0%
AAACTAGTATCTGTCAAGTA+CGG - Chr4:79481777-79481796 MsG0480022990.01.T01:intron 30.0%
AACATTTACTGAATCATAGC+TGG - Chr4:79480961-79480980 MsG0480022990.01.T01:intron 30.0%
AAGAAATAAACTTGATGCTG+TGG - Chr4:79482269-79482288 MsG0480022990.01.T01:CDS 30.0%
AATATCAGTAGCAGCAAATT+TGG - Chr4:79481220-79481239 MsG0480022990.01.T01:CDS 30.0%
AATGATTCTTGAAAATGAGG+AGG - Chr4:79481123-79481142 MsG0480022990.01.T01:CDS 30.0%
AATTCAGAATACTGCAGTAT+AGG - Chr4:79479964-79479983 MsG0480022990.01.T01:CDS 30.0%
ACCAAAATACAAGCAAAACT+TGG + Chr4:79480861-79480880 None:intergenic 30.0%
AGCAAAAAGGTAGTCATATT+TGG + Chr4:79480887-79480906 None:intergenic 30.0%
CCAAAATACAAGCAAAACTT+GGG + Chr4:79480860-79480879 None:intergenic 30.0%
CTGAAAAGACAAATGGAATT+GGG - Chr4:79482178-79482197 MsG0480022990.01.T01:CDS 30.0%
CTTTATTGAACATGACAAGA+TGG - Chr4:79482217-79482236 MsG0480022990.01.T01:CDS 30.0%
GAGAGAAATATCAAATGAGT+TGG - Chr4:79481068-79481087 MsG0480022990.01.T01:CDS 30.0%
GTGAAACAACTAAATCTTTC+AGG + Chr4:79481982-79482001 None:intergenic 30.0%
GTTGGGTAAGTCTATATATA+TGG - Chr4:79481380-79481399 MsG0480022990.01.T01:intron 30.0%
TAAGGATAACATTGCAACTA+AGG - Chr4:79480350-79480369 MsG0480022990.01.T01:intron 30.0%
TGTTGATATAAAGCAATCGT+AGG + Chr4:79481419-79481438 None:intergenic 30.0%
TTCAAGAATCATTCATGAGT+AGG + Chr4:79481116-79481135 None:intergenic 30.0%
TTGATGTTAACTGCTTTCTT+TGG + Chr4:79480161-79480180 None:intergenic 30.0%
TTTACGTATTCCTGTACATT+TGG - Chr4:79480724-79480743 MsG0480022990.01.T01:CDS 30.0%
! GCTCAATTTCTAAAGAAAGA+CGG - Chr4:79481641-79481660 MsG0480022990.01.T01:intron 30.0%
! TTAGTTACCTCAACGTTTTT+AGG + Chr4:79481751-79481770 None:intergenic 30.0%
!! AAATGAGTTGGTTAAAACCA+TGG - Chr4:79481080-79481099 MsG0480022990.01.T01:CDS 30.0%
!! ACACCTTTTTCATACTTTAG+CGG - Chr4:79482294-79482313 MsG0480022990.01.T01:CDS 30.0%
!! CTAACAGAAGTATTATGGAA+AGG + Chr4:79480053-79480072 None:intergenic 30.0%
!! CTGGGTTTTGTATATTGATT+TGG + Chr4:79480209-79480228 None:intergenic 30.0%
!!! TGGAATACCTATTTTGGTTA+AGG - Chr4:79480332-79480351 MsG0480022990.01.T01:intron 30.0%
AAAGTTGGGGCTATCATATT+AGG - Chr4:79480456-79480475 MsG0480022990.01.T01:CDS 35.0%
AACATAAGCAGCATCTGATA+CGG + Chr4:79481543-79481562 None:intergenic 35.0%
AAGTTGGGGCTATCATATTA+GGG - Chr4:79480457-79480476 MsG0480022990.01.T01:CDS 35.0%
AATACTGCAGTATAGGTACT+AGG - Chr4:79479971-79479990 MsG0480022990.01.T01:CDS 35.0%
AATGTGCAACATTGTTTGTG+TGG - Chr4:79481493-79481512 MsG0480022990.01.T01:intron 35.0%
ACTACTGAGTTCATACTTGA+AGG + Chr4:79481290-79481309 None:intergenic 35.0%
ATACAAAACCCAGTTCTCAA+AGG - Chr4:79480216-79480235 MsG0480022990.01.T01:CDS 35.0%
ATGACAAGATGGTCACAAAA+TGG - Chr4:79482228-79482247 MsG0480022990.01.T01:CDS 35.0%
CAACAAGAAACACCCAAAAT+TGG - Chr4:79482033-79482052 MsG0480022990.01.T01:CDS 35.0%
CAAGGTAGCATCTTAATTGT+AGG - Chr4:79482119-79482138 MsG0480022990.01.T01:CDS 35.0%
CTACTGAGTTCATACTTGAA+GGG + Chr4:79481289-79481308 None:intergenic 35.0%
CTTATCATGTATTTGCCTAG+CGG - Chr4:79480658-79480677 MsG0480022990.01.T01:intron 35.0%
CTTCTTACTTAATGTGAGCT+TGG - Chr4:79480575-79480594 MsG0480022990.01.T01:intron 35.0%
GCATCAAAGTATATCCCAAA+AGG - Chr4:79481611-79481630 MsG0480022990.01.T01:intron 35.0%
GCTGAAAAGACAAATGGAAT+TGG - Chr4:79482177-79482196 MsG0480022990.01.T01:CDS 35.0%
GGACTAAGAGGAAAAAGATT+AGG - Chr4:79481662-79481681 MsG0480022990.01.T01:intron 35.0%
GTTTCAACTTTCAAGACACA+TGG - Chr4:79479996-79480015 MsG0480022990.01.T01:CDS 35.0%
TATGTTCTTGAAACCATAGC+AGG - Chr4:79481557-79481576 MsG0480022990.01.T01:intron 35.0%
TCAAAGTATATCCCAAAAGG+TGG - Chr4:79481614-79481633 MsG0480022990.01.T01:intron 35.0%
TCAAGTATGAACTCAGTAGT+AGG - Chr4:79481290-79481309 MsG0480022990.01.T01:intron 35.0%
TCATTTGATATTTCTCTCGG+TGG + Chr4:79481066-79481085 None:intergenic 35.0%
TGACAAGATGGTCACAAAAT+GGG - Chr4:79482229-79482248 MsG0480022990.01.T01:CDS 35.0%
TTAGCAGGTTAAGGAAAGTT+GGG - Chr4:79480442-79480461 MsG0480022990.01.T01:CDS 35.0%
TTGTAGGAGAAAATGGAGTA+TGG - Chr4:79482135-79482154 MsG0480022990.01.T01:CDS 35.0%
TTTGTCAAAATCAGGCAAAG+AGG - Chr4:79481848-79481867 MsG0480022990.01.T01:intron 35.0%
! ATCTTTCAGGTATGAGTTCA+AGG + Chr4:79481969-79481988 None:intergenic 35.0%
! ATGCCATTTGGAATTTGCTT+TGG - Chr4:79482375-79482394 MsG0480022990.01.T01:CDS 35.0%
! CCCAAGTTTTGCTTGTATTT+TGG - Chr4:79480857-79480876 MsG0480022990.01.T01:CDS 35.0%
! GTCAAGTACGGATACTTTTA+AGG - Chr4:79481789-79481808 MsG0480022990.01.T01:intron 35.0%
! GTGAGACTGTACTACAATTT+TGG - Chr4:79481689-79481708 MsG0480022990.01.T01:intron 35.0%
! GTTGCATGGAATACCTATTT+TGG - Chr4:79480326-79480345 MsG0480022990.01.T01:intron 35.0%
!! ATTTGCTTTGGAGGTTTGAA+AGG - Chr4:79482387-79482406 MsG0480022990.01.T01:CDS 35.0%
!!! AATCATAGCTGGCCTTTTTA+TGG - Chr4:79480972-79480991 MsG0480022990.01.T01:intron 35.0%
!!! TTGTTTGTGTGGTTTTGTAC+AGG - Chr4:79481504-79481523 MsG0480022990.01.T01:intron 35.0%
AAAATTGCGTTCGCAATGCA+TGG + Chr4:79481445-79481464 None:intergenic 40.0%
ACGCCGCTAAAGTATGAAAA+AGG + Chr4:79482300-79482319 None:intergenic 40.0%
ACGGCTCTCTAACCATAAAA+AGG + Chr4:79480987-79481006 None:intergenic 40.0%
AGCTACACCTAAAAACGTTG+AGG - Chr4:79481741-79481760 MsG0480022990.01.T01:intron 40.0%
AGTTCTCAAAGGAGTCTTAG+AGG - Chr4:79480227-79480246 MsG0480022990.01.T01:CDS 40.0%
ATAGAGCTGATCAAGAGAGA+AGG - Chr4:79480277-79480296 MsG0480022990.01.T01:CDS 40.0%
CAAGGATCATCCAATGTGTA+TGG + Chr4:79481179-79481198 None:intergenic 40.0%
CACACTTCTAACTTTCGAAG+CGG + Chr4:79482480-79482499 None:intergenic 40.0%
CCTCCAAAGCAAATTCCAAA+TGG + Chr4:79482381-79482400 None:intergenic 40.0%
CTGCAAGCTGAAAAGACAAA+TGG - Chr4:79482171-79482190 MsG0480022990.01.T01:CDS 40.0%
GATAAGCTAAACACTACTGC+AGG - Chr4:79480372-79480391 MsG0480022990.01.T01:intron 40.0%
GTGTAATTCCAATTAGCCCA+AGG - Chr4:79481348-79481367 MsG0480022990.01.T01:intron 40.0%
GTTAGCAGGTTAAGGAAAGT+TGG - Chr4:79480441-79480460 MsG0480022990.01.T01:CDS 40.0%
GTTCCAGCAGGATATGAAAA+GGG - Chr4:79482351-79482370 MsG0480022990.01.T01:CDS 40.0%
TACACATTGGATGATCCTTG+TGG - Chr4:79481179-79481198 MsG0480022990.01.T01:CDS 40.0%
TAGCAAAAAGGCTCAACCTA+CGG + Chr4:79481006-79481025 None:intergenic 40.0%
TAGCAGGTTAAGGAAAGTTG+GGG - Chr4:79480443-79480462 MsG0480022990.01.T01:CDS 40.0%
TGTGCAGAATCCATACACAT+TGG - Chr4:79481166-79481185 MsG0480022990.01.T01:CDS 40.0%
TGTTCCAGCAGGATATGAAA+AGG - Chr4:79482350-79482369 MsG0480022990.01.T01:CDS 40.0%
TGTTTCACCAGTGAAAAGCT+TGG - Chr4:79481994-79482013 MsG0480022990.01.T01:CDS 40.0%
TTCTATGCTTCCAACATCCT+TGG - Chr4:79480083-79480102 MsG0480022990.01.T01:CDS 40.0%
! AAGGATGTTGGAAGCATAGA+AGG + Chr4:79480084-79480103 None:intergenic 40.0%
! AATTGAGCATAGCCACCTTT+TGG + Chr4:79481629-79481648 None:intergenic 40.0%
! AATTTGGTGACTGTGTCACT+TGG - Chr4:79481236-79481255 MsG0480022990.01.T01:CDS 40.0%
! AGGATGTTGGAAGCATAGAA+GGG + Chr4:79480083-79480102 None:intergenic 40.0%
! ATTGAGCATAGCCACCTTTT+GGG + Chr4:79481628-79481647 None:intergenic 40.0%
! CATACTTGAAGGGCATAAGA+TGG + Chr4:79481279-79481298 None:intergenic 40.0%
! CCATTTGGAATTTGCTTTGG+AGG - Chr4:79482378-79482397 MsG0480022990.01.T01:CDS 40.0%
! CTAAGACTCCTTTGAGAACT+GGG + Chr4:79480227-79480246 None:intergenic 40.0%
! TATGAAAAGGGCATGCCATT+TGG - Chr4:79482363-79482382 MsG0480022990.01.T01:CDS 40.0%
! TCTAAGACTCCTTTGAGAAC+TGG + Chr4:79480228-79480247 None:intergenic 40.0%
! TTTTATGGTTAGAGAGCCGT+AGG - Chr4:79480987-79481006 MsG0480022990.01.T01:intron 40.0%
! TTTTGTACAGGCCAATTTGC+AGG - Chr4:79481516-79481535 MsG0480022990.01.T01:intron 40.0%
!! CTAAAGAAAGACGGACTAAG+AGG - Chr4:79481650-79481669 MsG0480022990.01.T01:intron 40.0%
!! TTGTGGTTCAAGTAGTGGAT+CGG - Chr4:79481196-79481215 MsG0480022990.01.T01:CDS 40.0%
AAAGCAGCAGGTTCTCTTTC+AGG - Chr4:79480303-79480322 MsG0480022990.01.T01:intron 45.0%
AAGCAGCAGGTTCTCTTTCA+GGG - Chr4:79480304-79480323 MsG0480022990.01.T01:intron 45.0%
AATCCACTAGCCAAGGATGT+TGG + Chr4:79480096-79480115 None:intergenic 45.0%
ACATCAGACTTTCAACCGCT+AGG + Chr4:79480676-79480695 None:intergenic 45.0%
ACTTCTAACTTTCGAAGCGG+AGG + Chr4:79482477-79482496 None:intergenic 45.0%
CTACTAGTGAGACCAACTGT+TGG + Chr4:79481323-79481342 None:intergenic 45.0%
CTTCTAACTTTCGAAGCGGA+GGG + Chr4:79482476-79482495 None:intergenic 45.0%
GATCCACTACTTGAACCACA+AGG + Chr4:79481197-79481216 None:intergenic 45.0%
GATCCTTGTGGTTCAAGTAG+TGG - Chr4:79481191-79481210 MsG0480022990.01.T01:CDS 45.0%
GATTGAGAATCCACTAGCCA+AGG + Chr4:79480103-79480122 None:intergenic 45.0%
GGACTCGTAAGCTAGCAAAA+AGG + Chr4:79481018-79481037 None:intergenic 45.0%
GGAGTAGCATCCAAATGTAC+AGG + Chr4:79480737-79480756 None:intergenic 45.0%
GTAGGCATCAAACCAACAGT+TGG - Chr4:79481308-79481327 MsG0480022990.01.T01:intron 45.0%
TCTGATACGGTCCTGCAAAT+TGG + Chr4:79481530-79481549 None:intergenic 45.0%
TCTGCATGTGCTAATGCATC+TGG + Chr4:79480258-79480277 None:intergenic 45.0%
TGGGGCTATCATATTAGGGA+AGG - Chr4:79480461-79480480 MsG0480022990.01.T01:CDS 45.0%
TTCTAACTTTCGAAGCGGAG+GGG + Chr4:79482475-79482494 None:intergenic 45.0%
! ACATCTGCCAAGCTTTTCAC+TGG + Chr4:79482004-79482023 None:intergenic 45.0%
! ATGCCCTTTTCATATCCTGC+TGG + Chr4:79482357-79482376 None:intergenic 45.0%
! TAAAGCGTCTATGCCTGCTA+TGG + Chr4:79481573-79481592 None:intergenic 45.0%
! TCACTTGGTACTGAAACCGA+CGG - Chr4:79481251-79481270 MsG0480022990.01.T01:intron 45.0%
! TGAAAGAGAACCTGCTGCTT+TGG + Chr4:79480304-79480323 None:intergenic 45.0%
!! CTTGCTATTGGAGGTTATCC+TGG - Chr4:79482321-79482340 MsG0480022990.01.T01:CDS 45.0%
!! GGCTAGTGGATTCTCAATCA+AGG - Chr4:79480104-79480123 MsG0480022990.01.T01:CDS 45.0%
!! TTTAGCGGCGTACTTGCTAT+TGG - Chr4:79482309-79482328 MsG0480022990.01.T01:CDS 45.0%
!!! TTTTTATTTTCTTTTTAATT+AGG + Chr4:79481039-79481058 None:intergenic 5.0%
ACCCAACTGTGTCTTGCCTT+GGG + Chr4:79481367-79481386 None:intergenic 50.0%
AGGTCTAGTGAAGCTCCTAG+TGG - Chr4:79480510-79480529 MsG0480022990.01.T01:CDS 50.0%
AGTGGTTGGAATGCTAGAGG+TGG - Chr4:79480528-79480547 MsG0480022990.01.T01:CDS 50.0%
CAGCTTGCAGCATGAGATCT+TGG + Chr4:79482161-79482180 None:intergenic 50.0%
CCTAGTGGTTGGAATGCTAG+AGG - Chr4:79480525-79480544 MsG0480022990.01.T01:CDS 50.0%
CCTCTAGCATTCCAACCACT+AGG + Chr4:79480528-79480547 None:intergenic 50.0%
CTAACTACGCCAGCATCTCT+TGG + Chr4:79480426-79480445 None:intergenic 50.0%
CTAGTGAAGCTCCTAGTGGT+TGG - Chr4:79480514-79480533 MsG0480022990.01.T01:CDS 50.0%
CTGATGTGACCACTCACTCA+GGG + Chr4:79480490-79480509 None:intergenic 50.0%
CTGGCGTAGTTAGCAGGTTA+AGG - Chr4:79480433-79480452 MsG0480022990.01.T01:CDS 50.0%
CTTCCAACATCCTTGGCTAG+TGG - Chr4:79480090-79480109 MsG0480022990.01.T01:CDS 50.0%
GAGTAGGCAGAATGAAGCCA+TGG + Chr4:79481100-79481119 None:intergenic 50.0%
GGTTCTCTTTCAGGGTTGCA+TGG - Chr4:79480312-79480331 MsG0480022990.01.T01:intron 50.0%
GTGTCTTGCCTTGGGCTAAT+TGG + Chr4:79481359-79481378 None:intergenic 50.0%
TACCCAACTGTGTCTTGCCT+TGG + Chr4:79481368-79481387 None:intergenic 50.0%
TCAGTAGTGCCAAGAGATGC+TGG - Chr4:79480414-79480433 MsG0480022990.01.T01:CDS 50.0%
TCTAACTTTCGAAGCGGAGG+GGG + Chr4:79482474-79482493 None:intergenic 50.0%
TCTGATGTGACCACTCACTC+AGG + Chr4:79480491-79480510 None:intergenic 50.0%
TGAGTGAGTGGTCACATCAG+AGG - Chr4:79480490-79480509 MsG0480022990.01.T01:CDS 50.0%
TGCTAGAGGTGGACAAGGAA+AGG - Chr4:79480539-79480558 MsG0480022990.01.T01:CDS 50.0%
TGGAATGCTAGAGGTGGACA+AGG - Chr4:79480534-79480553 MsG0480022990.01.T01:CDS 50.0%
! GTTGGTCTCACTAGTAGAGC+AGG - Chr4:79481326-79481345 MsG0480022990.01.T01:intron 50.0%
!! CAGGCAAAGAGGTGCAGTTT+TGG - Chr4:79481859-79481878 MsG0480022990.01.T01:intron 50.0%
AGCCCAAGGCAAGACACAGT+TGG - Chr4:79481362-79481381 MsG0480022990.01.T01:intron 55.0%
AGGGCATAAGATGGAGCCGT+CGG + Chr4:79481270-79481289 None:intergenic 55.0%
ATGTGACCACTCACTCAGGG+TGG + Chr4:79480487-79480506 None:intergenic 55.0%
CCTGCTGGAACAATGACTCC+AGG + Chr4:79482342-79482361 None:intergenic 55.0%
CCTGGAGTCATTGTTCCAGC+AGG - Chr4:79482339-79482358 MsG0480022990.01.T01:CDS 55.0%
GAGAGAAGGACCAAAGCAGC+AGG - Chr4:79480291-79480310 MsG0480022990.01.T01:intron 55.0%
GAGATGCTGGCGTAGTTAGC+AGG - Chr4:79480427-79480446 MsG0480022990.01.T01:CDS 55.0%
GCCCAAGGCAAGACACAGTT+GGG - Chr4:79481363-79481382 MsG0480022990.01.T01:intron 55.0%
! GCAGGCTCTTTTGCACTGCT+TGG - Chr4:79480390-79480409 MsG0480022990.01.T01:CDS 55.0%
!! AGCGGCGTACTTGCTATTGG+AGG - Chr4:79482312-79482331 MsG0480022990.01.T01:CDS 55.0%
GGAAGGCCACCCTGAGTGAG+TGG - Chr4:79480478-79480497 MsG0480022990.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 79479939 79482500 79479939 ID=MsG0480022990.01;Name=MsG0480022990.01
Chr4 mRNA 79479939 79482500 79479939 ID=MsG0480022990.01.T01;Parent=MsG0480022990.01;Name=MsG0480022990.01.T01;_AED=0.49;_eAED=0.49;_QI=76|1|1|1|0.8|0.66|6|0|515
Chr4 exon 79479939 79480298 79479939 ID=MsG0480022990.01.T01:exon:3926;Parent=MsG0480022990.01.T01
Chr4 exon 79480385 79480577 79480385 ID=MsG0480022990.01.T01:exon:3925;Parent=MsG0480022990.01.T01
Chr4 exon 79480677 79480913 79480677 ID=MsG0480022990.01.T01:exon:3924;Parent=MsG0480022990.01.T01
Chr4 exon 79481055 79481266 79481055 ID=MsG0480022990.01.T01:exon:3923;Parent=MsG0480022990.01.T01
Chr4 exon 79481879 79482500 79481879 ID=MsG0480022990.01.T01:exon:3922;Parent=MsG0480022990.01.T01
Chr4 five_prime_UTR 79482425 79482500 79482425 ID=MsG0480022990.01.T01:five_prime_utr;Parent=MsG0480022990.01.T01
Chr4 CDS 79481879 79482424 79481879 ID=MsG0480022990.01.T01:cds;Parent=MsG0480022990.01.T01
Chr4 CDS 79481055 79481266 79481055 ID=MsG0480022990.01.T01:cds;Parent=MsG0480022990.01.T01
Chr4 CDS 79480677 79480913 79480677 ID=MsG0480022990.01.T01:cds;Parent=MsG0480022990.01.T01
Chr4 CDS 79480385 79480577 79480385 ID=MsG0480022990.01.T01:cds;Parent=MsG0480022990.01.T01
Chr4 CDS 79479939 79480298 79479939 ID=MsG0480022990.01.T01:cds;Parent=MsG0480022990.01.T01
Gene Sequence

>MsG0480022990.01.T01

ATGGACTCAGCACGTGCTTGCTCTTTCTTCAAGTTCCTTTCCATAATACTTCTGTTAGTTACATTCCCTTCTATGCTTCCAACATCCTTGGCTAGTGGATTCTCAATCAAGGAAGCAACAGTGCAAGATCTTCAACTTGCTTTCCAAAGAAAGCAGTTAACATCAAGACAACTTGTTGAATTCTACCTCAACCAAATCAATATACAAAACCCAGTTCTCAAAGGAGTCTTAGAGGTGAATCCAGATGCATTAGCACATGCAGATAGAGCTGATCAAGAGAGAAGGACCAAAGCAGCAGGTTCTCTTTCAGGGTTGCATGGAATACCTATTTTGGTTAAGGATAACATTGCAACTAAGGATAAGCTAAACACTACTGCAGGCTCTTTTGCACTGCTTGGCTCAGTAGTGCCAAGAGATGCTGGCGTAGTTAGCAGGTTAAGGAAAGTTGGGGCTATCATATTAGGGAAGGCCACCCTGAGTGAGTGGTCACATCAGAGGTCTAGTGAAGCTCCTAGTGGTTGGAATGCTAGAGGTGGACAAGGAAAGAATCCATACACATTGGATGATCCTTGTGGTTCAAGTAGTGGATCGGCAATATCAGTAGCAGCAAATTTGGTGACTGTGTCACTTGGTACTGAAACCGACGGCTCCATCTTATGCCCTTCAAGTATGAACTCAGTAGTAGGCATCAAACCAACAGTTGGTCTCACTAGTAGAGCAGGTGTAATTCCAATTAGCCCAAGGCAAGACACAGTTGGGCCAATTTGCAGGACCGTATCAGATGCTGCTTATGTTCTTGAAACCATAGCAGGCATAGACGCTTTAGATAAGAAAACAATTGAAGCATCAAAGTATATCCCAAAAGGTGGCTATGCTCAATTTCTAAAGAAAGACGGACTAAGAGGAAAAAGATTAGGAGTAGTGAGACTGTACTACAATTTTGGAAATGACACTTTTCTGCATGAAACTTTCAAGCTACACCTAAAAACGTTGAGGCAAAGAGGTGCAGTTTTGGTTGACGATTTGAATATTGATAACATTGATCAAATTATCAGTGGTCAAAGTGAAGAGATTGCTTTGAATTTTGAATTCAAATTATCCTTGAACTCATACCTGAAAGATTTAGTTGTTTCACCAGTGAAAAGCTTGGCAGATGTGATAGTCTTCAACAAGAAACACCCAAAATTGGAGAAAATGGAGTATGGCCAAGATCTCATGCTGCAAGCTGAAAAGACAAATGGAATTGGGAAAGCAGAGAAACAAGCTTTATTGAACATGACAAGATGGTCACAAAATGGGTTTGAGAAACTGATGAAAAGAAATAAACTTGATGCTGTGGTAACACCTTTTTCATACTTTAGCGGCGTACTTGCTATTGGAGGTTATCCTGGAGTCATTGTTCCAGCAGGATATGAAAAGGGCATGCCATTTGGAATTTGCTTTGGAGGTTTGAAAGGCTCAGAGCCGAAGTTAATTGAAATTGCTTATTCATTTGAACAAGCAACTTTGATCAGAAATCCCCCTCCGCTTCGAAAGTTAGAAGTGTGA
Protein sequence

>MsG0480022990.01.T01

MDSARACSFFKFLSIILLLVTFPSMLPTSLASGFSIKEATVQDLQLAFQRKQLTSRQLVEFYLNQINIQNPVLKGVLEVNPDALAHADRADQERRTKAAGSLSGLHGIPILVKDNIATKDKLNTTAGSFALLGSVVPRDAGVVSRLRKVGAIILGKATLSEWSHQRSSEAPSGWNARGGQGKNPYTLDDPCGSSSGSAISVAANLVTVSLGTETDGSILCPSSMNSVVGIKPTVGLTSRAGVIPISPRQDTVGPICRTVSDAAYVLETIAGIDALDKKTIEASKYIPKGGYAQFLKKDGLRGKRLGVVRLYYNFGNDTFLHETFKLHLKTLRQRGAVLVDDLNIDNIDQIISGQSEEIALNFEFKLSLNSYLKDLVVSPVKSLADVIVFNKKHPKLEKMEYGQDLMLQAEKTNGIGKAEKQALLNMTRWSQNGFEKLMKRNKLDAVVTPFSYFSGVLAIGGYPGVIVPAGYEKGMPFGICFGGLKGSEPKLIEIAYSFEQATLIRNPPPLRKLEV*