AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023610.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023610.01.T01 MTR_8g096950 85.978 271 9 3 1 243 1 270 5.14e-162 450
MsG0480023610.01.T01 MTR_5g010620 65.314 271 51 4 1 243 1 256 1.67e-112 324
MsG0480023610.01.T01 MTR_5g010620 65.314 271 51 4 1 243 33 288 3.42e-112 325
MsG0480023610.01.T01 MTR_3g110015 88.235 85 9 1 1 84 1 85 8.51e-45 145
MsG0480023610.01.T01 MTR_3g109978 88.235 85 9 1 1 84 92 176 2.29e-44 148
MsG0480023610.01.T01 MTR_7g055620 61.194 134 13 2 1 134 166 260 7.35e-43 149
MsG0480023610.01.T01 MTR_0411s0050 83.929 56 9 0 88 143 15 70 2.51e-27 101
MsG0480023610.01.T02 MTR_8g096950 85.978 271 9 3 1 243 1 270 5.14e-162 450
MsG0480023610.01.T02 MTR_5g010620 65.314 271 51 4 1 243 1 256 1.67e-112 324
MsG0480023610.01.T02 MTR_5g010620 65.314 271 51 4 1 243 33 288 3.42e-112 325
MsG0480023610.01.T02 MTR_3g110015 88.235 85 9 1 1 84 1 85 8.51e-45 145
MsG0480023610.01.T02 MTR_3g109978 88.235 85 9 1 1 84 92 176 2.29e-44 148
MsG0480023610.01.T02 MTR_7g055620 61.194 134 13 2 1 134 166 260 7.35e-43 149
MsG0480023610.01.T02 MTR_0411s0050 83.929 56 9 0 88 143 15 70 2.51e-27 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023610.01.T01 AT4G20330 57.249 269 88 3 1 243 1 268 3.52e-90 268
MsG0480023610.01.T01 AT4G21010 49.823 283 100 7 1 249 1 275 7.49e-69 214
MsG0480023610.01.T02 AT4G20330 57.249 269 88 3 1 243 1 268 3.52e-90 268
MsG0480023610.01.T02 AT4G21010 49.823 283 100 7 1 249 1 275 7.49e-69 214

Find 24 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACGATACATTACATATT+TGG 0.106263 4:-87613193 None:intergenic
GCAGCCACCACCGGAGTATT+AGG 0.268237 4:-87613629 None:intergenic
TTGTGAACAATCCTTTATTC+AGG 0.278647 4:+87613469 MsG0480023610.01.T01:intron
TAACGATACATTACATATTT+GGG 0.319051 4:-87613192 None:intergenic
GAACAACTTCACCTGAATAA+AGG 0.368670 4:-87613480 None:intergenic
CGCTTCATCTGAGCACCAAC+GGG 0.368774 4:-87613746 None:intergenic
AGCATTGCGTCGAGCAAAGT+TGG 0.452004 4:+87613596 MsG0480023610.01.T01:CDS
TCAGTGGATCTGCTGGTCAC+TGG 0.473850 4:-87613277 None:intergenic
CGGTTACTCAGTGGATCTGC+TGG 0.487745 4:-87613284 None:intergenic
GATGCATTTGCAGCCACCAC+CGG 0.494981 4:-87613638 None:intergenic
GCTGCAAATGCATCAGCAAA+TGG 0.504031 4:+87613647 MsG0480023610.01.T01:CDS
CTCTGCAAGAGCAACTAGAT+AGG 0.523289 4:+87613534 MsG0480023610.01.T01:CDS
TGTTATTGATCTATTGCTTG+AGG 0.558507 4:+87613769 MsG0480023610.01.T01:CDS
AAAACCTAATACTCCGGTGG+TGG 0.582600 4:+87613625 MsG0480023610.01.T01:CDS
TAGCAGAAAACCTAATACTC+CGG 0.589094 4:+87613619 MsG0480023610.01.T01:CDS
ACGCTTCATCTGAGCACCAA+CGG 0.595575 4:-87613747 None:intergenic
TCTGCTGGTCACTGGCTGTG+TGG 0.600374 4:-87613269 None:intergenic
AATTCTCAAGTGACACTGAG+AGG 0.626331 4:+87613693 MsG0480023610.01.T01:CDS
GGCACCTTTCGGTTACTCAG+TGG 0.639375 4:-87613293 None:intergenic
TGGCTGTGTGCAATCAATGA+CGG 0.655075 4:-87613249 None:intergenic
GCTTCATCTGAGCACCAACG+GGG 0.666699 4:-87613745 None:intergenic
AGATCCACTGAGTAACCGAA+AGG 0.686502 4:+87613289 MsG0480023610.01.T01:five_prime_UTR
CTTCATCTGAGCACCAACGG+GGG 0.696908 4:-87613744 None:intergenic
CAGAAAACCTAATACTCCGG+TGG 0.697637 4:+87613622 MsG0480023610.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACCTTAATTTATAATAA+TGG - Chr4:87615203-87615222 None:intergenic 10.0%
!! AAATAAACAAAACAAATGAT+AGG - Chr4:87615333-87615352 None:intergenic 15.0%
!! TTAATTTATAATAATGGCAA+CGG - Chr4:87615197-87615216 None:intergenic 15.0%
!!! TTTTAGAGGATTTTTAAAAA+AGG - Chr4:87613389-87613408 None:intergenic 15.0%
!! AATTAAGTTCTCAATATGTT+AGG - Chr4:87614145-87614164 None:intergenic 20.0%
!! ACTTAAATAGATGTCATAAA+GGG + Chr4:87614224-87614243 MsG0480023610.01.T01:intron 20.0%
!! ATAAATTAAGGTTAATACTG+AGG + Chr4:87615208-87615227 MsG0480023610.01.T01:intron 20.0%
!! ATTAAGTTCTCAATATGTTA+GGG - Chr4:87614144-87614163 None:intergenic 20.0%
!! CAAATTGAAACTAATATGTT+TGG + Chr4:87614004-87614023 MsG0480023610.01.T01:intron 20.0%
!! GATGTGAAAATAAAAAGTAA+CGG - Chr4:87613345-87613364 None:intergenic 20.0%
!! GTTGCCATTATTATAAATTA+AGG + Chr4:87615196-87615215 MsG0480023610.01.T01:intron 20.0%
!! TTAATGTTTGTCTTGAAATA+TGG + Chr4:87615425-87615444 MsG0480023610.01.T01:intron 20.0%
!!! AAAAATCCTCTAAAAACTTA+GGG + Chr4:87613394-87613413 MsG0480023610.01.T01:intron 20.0%
!!! AAGAAGATCAAATGTTTTAT+GGG + Chr4:87615098-87615117 MsG0480023610.01.T01:intron 20.0%
!!! GTTATTTGTTTTTTGTCTAT+AGG + Chr4:87614780-87614799 MsG0480023610.01.T01:intron 20.0%
!!! TAAAAATCCTCTAAAAACTT+AGG + Chr4:87613393-87613412 MsG0480023610.01.T01:intron 20.0%
!!! TATTAGTTTCAATTTGCAAT+TGG - Chr4:87614000-87614019 None:intergenic 20.0%
!!! TTTTTAAAAAAGGAATGGTT+AGG - Chr4:87613379-87613398 None:intergenic 20.0%
! AACATTTGATCTTCTTCAAA+AGG - Chr4:87615094-87615113 None:intergenic 25.0%
! AATGGAAGAAATTCAAAAAC+TGG + Chr4:87613665-87613684 MsG0480023610.01.T01:CDS 25.0%
! ATAATAACATTGCACATTAG+TGG + Chr4:87615125-87615144 MsG0480023610.01.T01:intron 25.0%
! ATACTCTTAATCAATGTTCA+CGG - Chr4:87614337-87614356 None:intergenic 25.0%
! ATGGAAATAGAGATTATAGA+TGG + Chr4:87615444-87615463 MsG0480023610.01.T01:intron 25.0%
! GACTTAAATAGATGTCATAA+AGG + Chr4:87614223-87614242 MsG0480023610.01.T01:intron 25.0%
! GTCAAAATCTTGTATATAGT+TGG + Chr4:87615520-87615539 MsG0480023610.01.T01:intron 25.0%
! TAATAACATTGCACATTAGT+GGG + Chr4:87615126-87615145 MsG0480023610.01.T01:intron 25.0%
! TGATATGATTGATATAGAGA+AGG + Chr4:87615722-87615741 MsG0480023610.01.T01:CDS 25.0%
! TTACATATCCTTATGTAGAA+TGG + Chr4:87614284-87614303 MsG0480023610.01.T01:intron 25.0%
! TTTCATTTATTGGAAGTTTC+TGG + Chr4:87613833-87613852 MsG0480023610.01.T01:intron 25.0%
!! ATGAAGAAGTTATTTGCTAA+AGG - Chr4:87614758-87614777 None:intergenic 25.0%
!! CATTCAATTCAATTTTGTGT+TGG + Chr4:87613808-87613827 MsG0480023610.01.T01:intron 25.0%
!! CTCATAATGATATCTTTTGT+AGG + Chr4:87615561-87615580 MsG0480023610.01.T01:intron 25.0%
!! GAAGAAGATCAAATGTTTTA+TGG + Chr4:87615097-87615116 MsG0480023610.01.T01:intron 25.0%
!!! GAGGATTTTTAAAAAAGGAA+TGG - Chr4:87613384-87613403 None:intergenic 25.0%
!!! TGTGTTGGTTTTTCATTTAT+TGG + Chr4:87613823-87613842 MsG0480023610.01.T01:intron 25.0%
!!! TTCAAGTTTTTGGTGAAAAA+TGG + Chr4:87613511-87613530 MsG0480023610.01.T01:exon 25.0%
AAAAACATCACCTATCACTA+AGG - Chr4:87615487-87615506 None:intergenic 30.0%
AACCAAAACACCAAATCATA+TGG - Chr4:87614547-87614566 None:intergenic 30.0%
AATTCTCATTTCTCACAGAT+TGG + Chr4:87615017-87615036 MsG0480023610.01.T01:intron 30.0%
ACCAATGAAATTCCACAATT+AGG + Chr4:87614505-87614524 MsG0480023610.01.T01:intron 30.0%
AGATTATAGATGGAACTATC+AGG + Chr4:87615454-87615473 MsG0480023610.01.T01:intron 30.0%
CATCAAACTCCAAAATATCT+TGG - Chr4:87614415-87614434 None:intergenic 30.0%
CATCAATGAAATTTCGAAAG+AGG - Chr4:87613439-87613458 None:intergenic 30.0%
GATTTCATTCTTCTTAGACT+TGG - Chr4:87615844-87615863 None:intergenic 30.0%
GTTTGCAAATTAAGCATACA+AGG + Chr4:87614191-87614210 MsG0480023610.01.T01:intron 30.0%
TAACCTCAAACTTAACAGAT+GGG - Chr4:87613952-87613971 None:intergenic 30.0%
TCATGTAAACTCAATGAGAA+TGG - Chr4:87615377-87615396 None:intergenic 30.0%
TCCTAATTGTGGAATTTCAT+TGG - Chr4:87614509-87614528 None:intergenic 30.0%
TCTATATCAATCATATCACG+AGG - Chr4:87615720-87615739 None:intergenic 30.0%
TGTTATTGATCTATTGCTTG+AGG + Chr4:87613769-87613788 MsG0480023610.01.T01:CDS 30.0%
TTAACCTCAAACTTAACAGA+TGG - Chr4:87613953-87613972 None:intergenic 30.0%
TTACAAAATCTTGCTCCTTA+AGG + Chr4:87615256-87615275 MsG0480023610.01.T01:intron 30.0%
TTCGTCAAAACCATATGATT+TGG + Chr4:87614534-87614553 MsG0480023610.01.T01:intron 30.0%
TTGAAACTAATATGTTTGGC+TGG + Chr4:87614008-87614027 MsG0480023610.01.T01:intron 30.0%
TTGTGAACAATCCTTTATTC+AGG + Chr4:87613469-87613488 MsG0480023610.01.T01:intron 30.0%
! AGTCATCTTCCAAGATATTT+TGG + Chr4:87614403-87614422 MsG0480023610.01.T01:intron 30.0%
! CTATTGCTTGAGGTAATTTT+TGG + Chr4:87613779-87613798 MsG0480023610.01.T01:intron 30.0%
! CTCTTACAAGGTAACTTTTA+CGG + Chr4:87614698-87614717 MsG0480023610.01.T01:intron 30.0%
! TAAGGAGCAAGATTTTGTAA+TGG - Chr4:87615256-87615275 None:intergenic 30.0%
! TCTTACAAGGTAACTTTTAC+GGG + Chr4:87614699-87614718 MsG0480023610.01.T01:intron 30.0%
! TTTTGTCTATAGGCAAAGTA+TGG + Chr4:87614790-87614809 MsG0480023610.01.T01:intron 30.0%
!!! AACCATATGATTTGGTGTTT+TGG + Chr4:87614542-87614561 MsG0480023610.01.T01:intron 30.0%
!!! CAAGATATTTTGGAGTTTGA+TGG + Chr4:87614413-87614432 MsG0480023610.01.T01:intron 30.0%
!!! TAGTTGGCTTTTCAATGAAT+AGG + Chr4:87615536-87615555 MsG0480023610.01.T01:intron 30.0%
AACCCAAAAGTAGAATACGA+CGG + Chr4:87614666-87614685 MsG0480023610.01.T01:CDS 35.0%
AAGCATGCTATGTTGATATG+AGG + Chr4:87614610-87614629 MsG0480023610.01.T01:CDS 35.0%
AAGTTCTCAATATGTTAGGG+TGG - Chr4:87614141-87614160 None:intergenic 35.0%
ACATGATACCAGGACATTAA+GGG + Chr4:87615391-87615410 MsG0480023610.01.T01:intron 35.0%
ACATTTCTTACAGCACCTTA+AGG - Chr4:87615274-87615293 None:intergenic 35.0%
AGCATGCTATGTTGATATGA+GGG + Chr4:87614611-87614630 MsG0480023610.01.T01:CDS 35.0%
AGCTTCTTCAACTTATACGT+AGG + Chr4:87614830-87614849 MsG0480023610.01.T01:CDS 35.0%
AGGTAGAATGACTTCTGTTA+GGG + Chr4:87614917-87614936 MsG0480023610.01.T01:intron 35.0%
AGTTCTCAATATGTTAGGGT+GGG - Chr4:87614140-87614159 None:intergenic 35.0%
ATCCACCTTAATGTTTGCTT+TGG - Chr4:87615661-87615680 None:intergenic 35.0%
ATGCATCTTGTAGATCGTTA+TGG - Chr4:87614366-87614385 None:intergenic 35.0%
ATTCTTCTTAGACTTGGACT+TGG - Chr4:87615838-87615857 None:intergenic 35.0%
CAAATTAAGCATACAAGGTC+AGG + Chr4:87614196-87614215 MsG0480023610.01.T01:intron 35.0%
CATGCTTCATTTATTTGCTC+TGG - Chr4:87614597-87614616 None:intergenic 35.0%
CATTGAGTTTACATGATACC+AGG + Chr4:87615381-87615400 MsG0480023610.01.T01:intron 35.0%
GAACAACTTCACCTGAATAA+AGG - Chr4:87613483-87613502 None:intergenic 35.0%
GACGAATCAATTCCTAATTG+TGG - Chr4:87614520-87614539 None:intergenic 35.0%
GAGAAGGATCTTCAAAAGAA+TGG + Chr4:87615738-87615757 MsG0480023610.01.T01:CDS 35.0%
GTAAGCTATCTTAAGTAGCA+TGG - Chr4:87614487-87614506 None:intergenic 35.0%
TAACGATCTACAAGATGCAT+AGG + Chr4:87614366-87614385 MsG0480023610.01.T01:intron 35.0%
TACATGATACCAGGACATTA+AGG + Chr4:87615390-87615409 MsG0480023610.01.T01:intron 35.0%
TAGCAGAAAACCTAATACTC+CGG + Chr4:87613619-87613638 MsG0480023610.01.T01:CDS 35.0%
TATCCTTATGTAGAATGGTG+TGG + Chr4:87614289-87614308 MsG0480023610.01.T01:intron 35.0%
TCAATGAGAATGGAAGCAAA+AGG - Chr4:87615367-87615386 None:intergenic 35.0%
TCCACCTTAATGTTTGCTTT+GGG - Chr4:87615660-87615679 None:intergenic 35.0%
TGAAAACATGGCGTTGTTAA+CGG - Chr4:87613317-87613336 None:intergenic 35.0%
TGATAGGAAGTGAATGAACA+AGG - Chr4:87615317-87615336 None:intergenic 35.0%
! ATAGGCAAAGTATGGTCTTA+AGG + Chr4:87614798-87614817 MsG0480023610.01.T01:intron 35.0%
! CATTTATTGGAAGTTTCTGG+TGG + Chr4:87613836-87613855 MsG0480023610.01.T01:intron 35.0%
! GAGTTTGATGGATGTTATGT+TGG + Chr4:87614425-87614444 MsG0480023610.01.T01:intron 35.0%
! GTAACGGAAGATTGAAAACA+TGG - Chr4:87613329-87613348 None:intergenic 35.0%
!! AAGATGTTTTTGAGAGTCTG+AGG + Chr4:87614640-87614659 MsG0480023610.01.T01:CDS 35.0%
!! GACAAACCCTAAGTTTTTAG+AGG - Chr4:87613403-87613422 None:intergenic 35.0%
!! TTAAGGTGCTGTAAGAAATG+TGG + Chr4:87615273-87615292 MsG0480023610.01.T01:intron 35.0%
!!! TTTTCCACTTTTTCAACCCT+TGG + Chr4:87615163-87615182 MsG0480023610.01.T01:intron 35.0%
AAGCCCATCTGTTAAGTTTG+AGG + Chr4:87613946-87613965 MsG0480023610.01.T01:intron 40.0%
AATGCCAAGGGTTGAAAAAG+TGG - Chr4:87615170-87615189 None:intergenic 40.0%
AATTCTCAAGTGACACTGAG+AGG + Chr4:87613693-87613712 MsG0480023610.01.T01:CDS 40.0%
ACATTGGGTAAGCATCCTTT+AGG - Chr4:87614883-87614902 None:intergenic 40.0%
ACCCAAAAGTAGAATACGAC+GGG + Chr4:87614667-87614686 MsG0480023610.01.T01:CDS 40.0%
ACTTATACGTAGGTATCCAG+AGG + Chr4:87614840-87614859 MsG0480023610.01.T01:intron 40.0%
AGGATATGTAAACGAACCTG+TGG - Chr4:87614275-87614294 None:intergenic 40.0%
AGGTCATATGCCTTAGTGAT+AGG + Chr4:87615474-87615493 MsG0480023610.01.T01:intron 40.0%
ATGACCTAAAGCAGCTGTTT+CGG + Chr4:87615682-87615701 MsG0480023610.01.T01:CDS 40.0%
ATGAGAATGGAAGCAAAAGG+AGG - Chr4:87615364-87615383 None:intergenic 40.0%
CAGGTAGAATGACTTCTGTT+AGG + Chr4:87614916-87614935 MsG0480023610.01.T01:intron 40.0%
CCACCTTAATGTTTGCTTTG+GGG - Chr4:87615659-87615678 None:intergenic 40.0%
CTTATACGTAGGTATCCAGA+GGG + Chr4:87614841-87614860 MsG0480023610.01.T01:intron 40.0%
CTTTAGGTCAAAACACAGCA+AGG - Chr4:87614867-87614886 None:intergenic 40.0%
GTACCACACCATTCTACATA+AGG - Chr4:87614295-87614314 None:intergenic 40.0%
TGACCCCAAAGCAAACATTA+AGG + Chr4:87615653-87615672 MsG0480023610.01.T01:CDS 40.0%
TGAGTTTGGCTAATCACTGT+GGG + Chr4:87614035-87614054 MsG0480023610.01.T01:intron 40.0%
TGCAAGTCTTCCATCACATT+GGG - Chr4:87614898-87614917 None:intergenic 40.0%
TGCTGTCAACTTTGATTCAC+AGG + Chr4:87615611-87615630 MsG0480023610.01.T01:CDS 40.0%
! AATTGTCAGCTTGGTTCTCT+TGG - Chr4:87615868-87615887 None:intergenic 40.0%
! TTAACAGATGGGCTTCTCAA+AGG - Chr4:87613941-87613960 None:intergenic 40.0%
!! ATGTTTGCTTTGGGGTCATT+CGG - Chr4:87615651-87615670 None:intergenic 40.0%
!!! CTTGCTGTGTTTTGACCTAA+AGG + Chr4:87614865-87614884 MsG0480023610.01.T01:intron 40.0%
!!! TCGTGCGACTTTCAAGTTTT+TGG + Chr4:87613501-87613520 MsG0480023610.01.T01:five_prime_UTR 40.0%
AAAACCTAATACTCCGGTGG+TGG + Chr4:87613625-87613644 MsG0480023610.01.T01:CDS 45.0%
AAGTAGAATACGACGGGCAA+CGG + Chr4:87614673-87614692 MsG0480023610.01.T01:CDS 45.0%
AAGTGAATGAACAAGGTCGC+AGG - Chr4:87615310-87615329 None:intergenic 45.0%
AATATACGTAAAGCCCCCGT+TGG + Chr4:87613731-87613750 MsG0480023610.01.T01:CDS 45.0%
AATGAACAAGGTCGCAGGAA+AGG - Chr4:87615305-87615324 None:intergenic 45.0%
AGATCCACTGAGTAACCGAA+AGG + Chr4:87613289-87613308 MsG0480023610.01.T01:five_prime_UTR 45.0%
AGCTGACAATTCCCATCTTC+CGG + Chr4:87615877-87615896 MsG0480023610.01.T01:CDS 45.0%
AGGACTGCAGCACAAATTGA+TGG + Chr4:87615792-87615811 MsG0480023610.01.T01:CDS 45.0%
AGGATGCTTACCCAATGTGA+TGG + Chr4:87614885-87614904 MsG0480023610.01.T01:intron 45.0%
ATGAACAAGGTCGCAGGAAA+GGG - Chr4:87615304-87615323 None:intergenic 45.0%
CAGAAAACCTAATACTCCGG+TGG + Chr4:87613622-87613641 MsG0480023610.01.T01:CDS 45.0%
CCCCAAAGCAAACATTAAGG+TGG + Chr4:87615656-87615675 MsG0480023610.01.T01:CDS 45.0%
CTCTGCAAGAGCAACTAGAT+AGG + Chr4:87613534-87613553 MsG0480023610.01.T01:CDS 45.0%
CTGAAAAAGCTCCGGAAGAT+GGG - Chr4:87615891-87615910 None:intergenic 45.0%
CTGAAAACGTCGTCAGGAAA+TGG - Chr4:87614964-87614983 None:intergenic 45.0%
CTGAGTTTGGCTAATCACTG+TGG + Chr4:87614034-87614053 MsG0480023610.01.T01:intron 45.0%
CTGCAAGTCTTCCATCACAT+TGG - Chr4:87614899-87614918 None:intergenic 45.0%
CTTAGACTTGGACTTGGACT+TGG - Chr4:87615832-87615851 None:intergenic 45.0%
GAAGATGGGAATTGTCAGCT+TGG - Chr4:87615877-87615896 None:intergenic 45.0%
GAGTTTGGCTAATCACTGTG+GGG + Chr4:87614036-87614055 MsG0480023610.01.T01:intron 45.0%
GATTTCGATGCATGAGACGA+GGG + Chr4:87613870-87613889 MsG0480023610.01.T01:intron 45.0%
GCTGCAAATGCATCAGCAAA+TGG + Chr4:87613647-87613666 MsG0480023610.01.T01:CDS 45.0%
GTCTCATGCATCGAAATCAC+TGG - Chr4:87613868-87613887 None:intergenic 45.0%
TATGTAAACGAACCTGTGGC+AGG - Chr4:87614271-87614290 None:intergenic 45.0%
TCACTCTTCCCTTAATGTCC+TGG - Chr4:87615402-87615421 None:intergenic 45.0%
TCTCAATATGTTAGGGTGGG+CGG - Chr4:87614137-87614156 None:intergenic 45.0%
TCTGAAAAAGCTCCGGAAGA+TGG - Chr4:87615892-87615911 None:intergenic 45.0%
TGATTTCGATGCATGAGACG+AGG + Chr4:87613869-87613888 MsG0480023610.01.T01:intron 45.0%
TGGCTGTGTGCAATCAATGA+CGG - Chr4:87613252-87613271 None:intergenic 45.0%
! CAATGTGATGGAAGACTTGC+AGG + Chr4:87614897-87614916 MsG0480023610.01.T01:intron 45.0%
! TACTCCGAAACAGCTGCTTT+AGG - Chr4:87615689-87615708 None:intergenic 45.0%
! TGCCCGTCGTATTCTACTTT+TGG - Chr4:87614672-87614691 None:intergenic 45.0%
!! GCCCGTCGTATTCTACTTTT+GGG - Chr4:87614671-87614690 None:intergenic 45.0%
!! GGCAACGGTTTTAATGCCAA+GGG - Chr4:87615182-87615201 None:intergenic 45.0%
!! TGGCAACGGTTTTAATGCCA+AGG - Chr4:87615183-87615202 None:intergenic 45.0%
!! TGTAGGCTTTGAAAGCTGCA+GGG + Chr4:87615578-87615597 MsG0480023610.01.T01:intron 45.0%
!! TGTTTGCTTTGGGGTCATTC+GGG - Chr4:87615650-87615669 None:intergenic 45.0%
!! TTGTAGGCTTTGAAAGCTGC+AGG + Chr4:87615577-87615596 MsG0480023610.01.T01:intron 45.0%
AAACGAACCTGTGGCAGGAT+TGG - Chr4:87614266-87614285 None:intergenic 50.0%
AACGAACCTGTGGCAGGATT+GGG - Chr4:87614265-87614284 None:intergenic 50.0%
ACGCTTCATCTGAGCACCAA+CGG - Chr4:87613750-87613769 None:intergenic 50.0%
AGCATTGCGTCGAGCAAAGT+TGG + Chr4:87613596-87613615 MsG0480023610.01.T01:CDS 50.0%
AGTCCTCCTCTTTGCAGTGT+TGG - Chr4:87615778-87615797 None:intergenic 50.0%
CTACCAACACTGCAAAGAGG+AGG + Chr4:87615772-87615791 MsG0480023610.01.T01:CDS 50.0%
CTGCTACCAACACTGCAAAG+AGG + Chr4:87615769-87615788 MsG0480023610.01.T01:CDS 50.0%
CTGCTACTGAAAACGTCGTC+AGG - Chr4:87614970-87614989 None:intergenic 50.0%
CTTGGACTTGGACTTGGACT+TGG - Chr4:87615826-87615845 None:intergenic 50.0%
GCGTTGTTAACGGCACCTTT+CGG - Chr4:87613307-87613326 None:intergenic 50.0%
GTTTGGCTGGACACTGAGTT+TGG + Chr4:87614021-87614040 MsG0480023610.01.T01:intron 50.0%
TCAAATCCCAATCCTGCCAC+AGG + Chr4:87614256-87614275 MsG0480023610.01.T01:intron 50.0%
TGAAAGCTGCAGGGCAGATT+TGG + Chr4:87615587-87615606 MsG0480023610.01.T01:intron 50.0%
! GACGACGTTTTCAGTAGCAG+TGG + Chr4:87614970-87614989 MsG0480023610.01.T01:intron 50.0%
!! CTCTTTGCAGTGTTGGTAGC+AGG - Chr4:87615771-87615790 None:intergenic 50.0%
CAAAACACAGCAAGGCCCTC+TGG - Chr4:87614859-87614878 None:intergenic 55.0%
CGCTTCATCTGAGCACCAAC+GGG - Chr4:87613749-87613768 None:intergenic 55.0%
CGGGCAACGGTTCTCTTACA+AGG + Chr4:87614686-87614705 MsG0480023610.01.T01:CDS 55.0%
CGGTTACTCAGTGGATCTGC+TGG - Chr4:87613287-87613306 None:intergenic 55.0%
CTTCATCTGAGCACCAACGG+GGG - Chr4:87613747-87613766 None:intergenic 55.0%
GATGCATTTGCAGCCACCAC+CGG - Chr4:87613641-87613660 None:intergenic 55.0%
GCTTCATCTGAGCACCAACG+GGG - Chr4:87613748-87613767 None:intergenic 55.0%
GGCACCTTTCGGTTACTCAG+TGG - Chr4:87613296-87613315 None:intergenic 55.0%
TCAGTGGATCTGCTGGTCAC+TGG - Chr4:87613280-87613299 None:intergenic 55.0%
! GCAGCCACCACCGGAGTATT+AGG - Chr4:87613632-87613651 None:intergenic 60.0%
! TCTGCTGGTCACTGGCTGTG+TGG - Chr4:87613272-87613291 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 87613195 87615917 87613195 ID=MsG0480023610.01;Name=MsG0480023610.01
Chr4 mRNA 87613195 87615917 87613195 ID=MsG0480023610.01.T01;Parent=MsG0480023610.01;Name=MsG0480023610.01.T01;_AED=0.45;_eAED=0.47;_QI=155|0.75|0.6|1|0.75|0.6|5|0|253
Chr4 exon 87613195 87613310 87613195 ID=MsG0480023610.01.T01:exon:1835;Parent=MsG0480023610.01.T01
Chr4 exon 87613491 87613790 87613491 ID=MsG0480023610.01.T01:exon:1836;Parent=MsG0480023610.01.T01
Chr4 five_prime_UTR 87613195 87613310 87613195 ID=MsG0480023610.01.T01:five_prime_utr;Parent=MsG0480023610.01.T01
Chr4 five_prime_UTR 87613491 87613529 87613491 ID=MsG0480023610.01.T01:five_prime_utr;Parent=MsG0480023610.01.T01
Chr4 CDS 87613530 87613790 87613530 ID=MsG0480023610.01.T01:cds;Parent=MsG0480023610.01.T01
Chr4 CDS 87614576 87614707 87614576 ID=MsG0480023610.01.T01:cds;Parent=MsG0480023610.01.T01
Chr4 CDS 87614802 87614851 87614802 ID=MsG0480023610.01.T01:cds;Parent=MsG0480023610.01.T01
Chr4 CDS 87615599 87615917 87615599 ID=MsG0480023610.01.T01:cds;Parent=MsG0480023610.01.T01
Chr4 mRNA 87613455 87615917 87613455 ID=MsG0480023610.01.T02;Parent=MsG0480023610.01;Name=MsG0480023610.01.T02;_AED=0.45;_eAED=0.47;_QI=75|0.66|0.5|1|1|1|4|0|253
Chr4 exon 87613455 87613790 87613455 ID=MsG0480023610.01.T02:exon:1840;Parent=MsG0480023610.01.T02
Chr4 five_prime_UTR 87613455 87613529 87613455 ID=MsG0480023610.01.T02:five_prime_utr;Parent=MsG0480023610.01.T02
Chr4 CDS 87613530 87613790 87613530 ID=MsG0480023610.01.T02:cds;Parent=MsG0480023610.01.T02
Chr4 CDS 87614576 87614707 87614576 ID=MsG0480023610.01.T02:cds;Parent=MsG0480023610.01.T02
Chr4 CDS 87614802 87614851 87614802 ID=MsG0480023610.01.T02:cds;Parent=MsG0480023610.01.T02
Chr4 CDS 87615599 87615917 87615599 ID=MsG0480023610.01.T02:cds;Parent=MsG0480023610.01.T02
Gene Sequence

>MsG0480023610.01.T01

ATGGCTCTGCAAGAGCAACTAGATAGGTTCAAGAAACAGCAAGAGAAGTGTCAATCGACACTCTCGAGCATTGCGTCGAGCAAAGTTGGTAGCAGAAAACCTAATACTCCGGTGGTGGCTGCAAATGCATCAGCAAATGGAAGAAATTCAAAAACTGGTGTTAAATTCTCAAGTGACACTGAGAGGCTTCAGCAGATTAATAATATACGTAAAGCCCCCGTTGGTGCTCAGATGAAGCGTGTTATTGATCTATTGCTTGAGACACGACAAGCTTTTACACCAGAGCAAATAAATGAAGCATGCTATGTTGATATGAGGGCTAACAAAGATGTTTTTGAGAGTCTGAGGAAAAACCCAAAAGTAGAATACGACGGGCAACGGTTCTCTTACAAGGCAAAGTATGGTCTTAAGGAGAAAAGCGAGCTTCTTCAACTTATACGTAGGGCAGATTTGGCTGCTGTCAACTTTGATTCACAGGACGACATTGCATACCCGAATGACCCCAAAGCAAACATTAAGGTGGATGATGACCTAAAGCAGCTGTTTCGGAGTATTGAGTTACCTCGTGATATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGAGGACTGCAGCACAAATTGATGGCGTTTCTTCCAAGTCCAAGTCCAAGTCCAAGTCTAAGAAGAATGAAATCACCAAGAGAACCAAGCTGACAATTCCCATCTTCCGGAGCTTTTTCAGAACCTAA

>MsG0480023610.01.T02

ATGGCTCTGCAAGAGCAACTAGATAGGTTCAAGAAACAGCAAGAGAAGTGTCAATCGACACTCTCGAGCATTGCGTCGAGCAAAGTTGGTAGCAGAAAACCTAATACTCCGGTGGTGGCTGCAAATGCATCAGCAAATGGAAGAAATTCAAAAACTGGTGTTAAATTCTCAAGTGACACTGAGAGGCTTCAGCAGATTAATAATATACGTAAAGCCCCCGTTGGTGCTCAGATGAAGCGTGTTATTGATCTATTGCTTGAGACACGACAAGCTTTTACACCAGAGCAAATAAATGAAGCATGCTATGTTGATATGAGGGCTAACAAAGATGTTTTTGAGAGTCTGAGGAAAAACCCAAAAGTAGAATACGACGGGCAACGGTTCTCTTACAAGGCAAAGTATGGTCTTAAGGAGAAAAGCGAGCTTCTTCAACTTATACGTAGGGCAGATTTGGCTGCTGTCAACTTTGATTCACAGGACGACATTGCATACCCGAATGACCCCAAAGCAAACATTAAGGTGGATGATGACCTAAAGCAGCTGTTTCGGAGTATTGAGTTACCTCGTGATATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGAGGACTGCAGCACAAATTGATGGCGTTTCTTCCAAGTCCAAGTCCAAGTCCAAGTCTAAGAAGAATGAAATCACCAAGAGAACCAAGCTGACAATTCCCATCTTCCGGAGCTTTTTCAGAACCTAA
Protein sequence

>MsG0480023610.01.T01

MALQEQLDRFKKQQEKCQSTLSSIASSKVGSRKPNTPVVAANASANGRNSKTGVKFSSDTERLQQINNIRKAPVGAQMKRVIDLLLETRQAFTPEQINEACYVDMRANKDVFESLRKNPKVEYDGQRFSYKAKYGLKEKSELLQLIRRADLAAVNFDSQDDIAYPNDPKANIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRTAAQIDGVSSKSKSKSKSKKNEITKRTKLTIPIFRSFFRT*

>MsG0480023610.01.T02

MALQEQLDRFKKQQEKCQSTLSSIASSKVGSRKPNTPVVAANASANGRNSKTGVKFSSDTERLQQINNIRKAPVGAQMKRVIDLLLETRQAFTPEQINEACYVDMRANKDVFESLRKNPKVEYDGQRFSYKAKYGLKEKSELLQLIRRADLAAVNFDSQDDIAYPNDPKANIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRTAAQIDGVSSKSKSKSKSKKNEITKRTKLTIPIFRSFFRT*