AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018127.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018127.01.T01 MTR_4g005900 98.282 291 4 1 1 291 1 290 0.0 587
MsG0480018127.01.T01 MTR_4g005900 97.595 291 4 2 1 291 1 288 0.0 578
MsG0480018127.01.T01 MTR_8g016140 32.567 261 144 6 36 285 20 259 4.66e-35 127
MsG0480018127.01.T01 MTR_5g016680 34.221 263 165 4 27 285 71 329 2.64e-34 127
MsG0480018127.01.T01 MTR_5g016680 34.848 264 161 6 27 285 71 328 1.34e-33 125
MsG0480018127.01.T01 MTR_5g016680 41.964 112 61 3 27 134 71 182 3.01e-18 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018127.01.T01 AT3G21215 64.952 311 87 1 1 289 1 311 1.92e-125 360
MsG0480018127.01.T01 AT3G21215 65.147 307 85 1 1 285 1 307 1.14e-122 354
MsG0480018127.01.T01 AT3G21215 65.147 307 85 1 1 285 1 307 1.14e-122 354
MsG0480018127.01.T01 AT3G21215 65.147 307 85 1 1 285 1 307 1.14e-122 354
MsG0480018127.01.T01 AT2G42240 36.803 269 145 9 24 289 38 284 8.95e-38 135
MsG0480018127.01.T01 AT2G42240 36.226 265 144 9 24 285 38 280 2.32e-36 132
MsG0480018127.01.T01 AT2G42240 35.985 264 144 9 24 284 38 279 2.57e-35 129
MsG0480018127.01.T01 AT3G13700 30.903 288 164 8 7 285 18 279 6.54e-32 120
MsG0480018127.01.T01 AT3G13700 28.852 305 164 8 7 284 18 296 4.08e-27 107

Find 158 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTATACATTGGTATTT+AGG 0.097707 4:-505988 MsG0480018127.01.T01:three_prime_UTR
CCTTGCAACACCCTGTTTAT+TGG 0.156343 4:-507269 MsG0480018127.01.T01:CDS
CTCATACTTTGCATTCAATT+TGG 0.213545 4:-506495 MsG0480018127.01.T01:three_prime_UTR
TCCTCCGCCACCACCTGTTT+GGG 0.218443 4:-508771 MsG0480018127.01.T01:CDS
CTTGCAACACCCTGTTTATT+GGG 0.228971 4:-507268 MsG0480018127.01.T01:CDS
TCTCTCTCTTTAACATCTTC+TGG 0.236900 4:+509559 None:intergenic
TGGTATCTGCTTCCAACTTT+AGG 0.243384 4:-505944 MsG0480018127.01.T01:three_prime_UTR
TGGTTTCTCCATTCTGTTGT+AGG 0.248963 4:-506458 MsG0480018127.01.T01:three_prime_UTR
AACCAATATTACTACATTAT+AGG 0.249534 4:-506267 MsG0480018127.01.T01:three_prime_UTR
CCGGATTTACTTCAAAAGTT+AGG 0.257743 4:-509836 MsG0480018127.01.T01:five_prime_UTR
CGCCGGCGGGAGGCCATTGC+TGG 0.257845 4:+509729 None:intergenic
TGGAAGACCCGTTATAAATA+TGG 0.265459 4:+509579 None:intergenic
TCTGTATACATTGGTATTTA+GGG 0.267237 4:-505987 MsG0480018127.01.T01:three_prime_UTR
AAAGCCATTCTCACCTGAAT+TGG 0.289777 4:+508325 None:intergenic
ATCCTCCGCCACCACCTGTT+TGG 0.292096 4:-508772 MsG0480018127.01.T01:CDS
AACTAAGTATTGGTAAATTC+AGG 0.292403 4:-506598 MsG0480018127.01.T01:three_prime_UTR
AAACACCTATGAAACTAATC+TGG 0.306027 4:+506087 None:intergenic
CACCCTGTTTATTGGGAACT+TGG 0.308237 4:-507261 MsG0480018127.01.T01:CDS
TAGCAGTTATGTTCCAATTC+AGG 0.309823 4:-508338 MsG0480018127.01.T01:intron
CAGCCCATGCCATGAAAATA+AGG 0.317290 4:+505877 None:intergenic
TTAAGCAAATGAAGATTATA+AGG 0.318083 4:-507076 MsG0480018127.01.T01:CDS
GAAGGAATAGCGGTGGGTTG+AGG 0.329734 4:+509695 None:intergenic
ATCCTATAATGTAGTAATAT+TGG 0.336175 4:+506265 None:intergenic
TTTGTTTGAAATGTGCTTTA+TGG 0.336993 4:-506022 MsG0480018127.01.T01:three_prime_UTR
ATGAGAGTGGAAAGGGTAGA+TGG 0.339157 4:+505838 None:intergenic
AATTTACCAATACTTAGTTT+TGG 0.340502 4:+506551 None:intergenic
AATTTACCAATACTTAGTTT+TGG 0.341755 4:+506602 None:intergenic
CTCCCAAGTTCCCAATAAAC+AGG 0.342043 4:+507258 None:intergenic
TTCTCTATTAACCCAGCATC+TGG 0.347556 4:-506770 MsG0480018127.01.T01:three_prime_UTR
GGTGCTGTTATCCCAAGTTC+TGG 0.347584 4:-506883 MsG0480018127.01.T01:CDS
AATATCAGACATGCATTTAT+CGG 0.357969 4:-506126 MsG0480018127.01.T01:three_prime_UTR
ATAGCGGTGGGTTGAGGAGG+AGG 0.368075 4:+509701 None:intergenic
AGCAGATACCAATGCCTGTT+TGG 0.374337 4:+505956 None:intergenic
GGTTCCCAGATTAGTTTCAT+AGG 0.376752 4:-506092 MsG0480018127.01.T01:three_prime_UTR
ATCCCAAGTTCTGGTTCAAT+TGG 0.381310 4:-506874 MsG0480018127.01.T01:CDS
GGAGGCCATTGCTGGTGGTA+AGG 0.381880 4:+509737 None:intergenic
TAGTTTCATAGGTGTTTAGA+TGG 0.388607 4:-506081 MsG0480018127.01.T01:three_prime_UTR
ACCTACCCTATGGCTGTTCC+TGG 0.389519 4:-506360 MsG0480018127.01.T01:three_prime_UTR
TGCTGCTAAAGATATTCTTC+AGG 0.389765 4:-509428 MsG0480018127.01.T01:CDS
GGCATTGGTACTTGTGCAAC+AGG 0.393304 4:+508382 None:intergenic
TTACTTCAAAAGTTAGGGTT+AGG 0.393352 4:-509830 MsG0480018127.01.T01:five_prime_UTR
CGGATTTACTTCAAAAGTTA+GGG 0.402484 4:-509835 MsG0480018127.01.T01:five_prime_UTR
GATTGATACTCATTCATTCA+TGG 0.406644 4:-509777 MsG0480018127.01.T01:exon
ATGCCAATTGAACCAGAACT+TGG 0.417682 4:+506871 None:intergenic
TTTCAAAGCTGAAAAGCCTA+TGG 0.420590 4:-509485 MsG0480018127.01.T01:CDS
TACCCATGTGGTCCCCAAAC+AGG 0.424369 4:+508758 None:intergenic
GGTTCGAACCATATTTATAA+CGG 0.432197 4:-509587 MsG0480018127.01.T01:CDS
CAGTCATAAACCCCAGATGC+TGG 0.438126 4:+506758 None:intergenic
TCTCAAGTTCAAGTTGAACT+TGG 0.441983 4:+509880 None:intergenic
GGAATAGCGGTGGGTTGAGG+AGG 0.444814 4:+509698 None:intergenic
TGGCATCATATACATACATT+TGG 0.445077 4:-506161 MsG0480018127.01.T01:three_prime_UTR
TCAATGCCAAAACTAAGTAT+TGG 0.446988 4:-506557 MsG0480018127.01.T01:three_prime_UTR
TCAATGCCAAAACTAAGTAT+TGG 0.446988 4:-506608 MsG0480018127.01.T01:three_prime_UTR
TAGATGGCGTTATCATTTGT+AGG 0.452371 4:-506065 MsG0480018127.01.T01:three_prime_UTR
CCCCAAACAGGTGGTGGCGG+AGG 0.452926 4:+508770 None:intergenic
ACCCTGTTTATTGGGAACTT+GGG 0.453911 4:-507260 MsG0480018127.01.T01:CDS
GTTCGAACCATATTTATAAC+GGG 0.455076 4:-509586 MsG0480018127.01.T01:CDS
TTAGGGATGCTTATCCAAAC+AGG 0.455990 4:-505970 MsG0480018127.01.T01:three_prime_UTR
GAGGCCATTGCTGGTGGTAA+GGG 0.456679 4:+509738 None:intergenic
GGATCATACGGAGGAGGAGG+TGG 0.460265 4:+508418 None:intergenic
GCCATTGCTGGTGGTAAGGG+TGG 0.461353 4:+509741 None:intergenic
CATTGCTACTGGAGCTCCAT+TGG 0.465712 4:+506335 None:intergenic
TCATACGGAGGAGGAGGTGG+TGG 0.465780 4:+508421 None:intergenic
CAGCATCTGGGGTTTATGAC+TGG 0.465788 4:-506757 MsG0480018127.01.T01:three_prime_UTR
ACATTAATGAGGAAGAAGTC+AGG 0.470462 4:-507232 MsG0480018127.01.T01:CDS
GCTGGGGATTATAATCATAC+TGG 0.472133 4:-508818 MsG0480018127.01.T01:CDS
ATCTTCATTTGCTTAAAGCC+AGG 0.474830 4:+507083 None:intergenic
ATGACTTATCAGTAGCTTGA+AGG 0.479145 4:-506315 MsG0480018127.01.T01:three_prime_UTR
AGTAAACGGTTACGAACAGC+TGG 0.481756 4:-508836 MsG0480018127.01.T01:CDS
AACATTTGTCGATGGTTACC+TGG 0.482646 4:-509529 MsG0480018127.01.T01:CDS
GCAACAGGATAGCCTGCATA+TGG 0.482662 4:+508397 None:intergenic
GTGGTAAGGGTGGATGCCGT+TGG 0.484200 4:+509751 None:intergenic
AGGAGGAGGAGGAGCGCCGG+CGG 0.484620 4:+509715 None:intergenic
ATGGCTGTTCCTGGTGCCAA+TGG 0.485478 4:-506351 MsG0480018127.01.T01:three_prime_UTR
CATTTATCGGCAGCATGTGT+TGG 0.485795 4:-506113 MsG0480018127.01.T01:three_prime_UTR
TACTGATAAGTCATTGCTAC+TGG 0.489556 4:+506324 None:intergenic
TGTGGTCCCCAAACAGGTGG+TGG 0.492889 4:+508764 None:intergenic
ACTAAGTATTGGTAAATTCA+GGG 0.498341 4:-506597 MsG0480018127.01.T01:three_prime_UTR
ACAACACATGAACCTAAAGT+TGG 0.498571 4:+505932 None:intergenic
TCTCTATTAACCCAGCATCT+GGG 0.500261 4:-506769 MsG0480018127.01.T01:three_prime_UTR
GCAAATGAAGATTATAAGGC+AGG 0.500307 4:-507072 MsG0480018127.01.T01:CDS
AATGATAATGAGAGTGGAAA+GGG 0.506100 4:+505831 None:intergenic
ATGCTTATCCAAACAGGCAT+TGG 0.507705 4:-505964 MsG0480018127.01.T01:three_prime_UTR
GGAGGAGGAGCGCCGGCGGG+AGG 0.508456 4:+509719 None:intergenic
GGTGGTGGCGGAGGATGAAA+AGG 0.515482 4:+508779 None:intergenic
GGCGATGACTTGATAATCAA+TGG 0.515826 4:+506218 None:intergenic
CACCAGCAATGGCCTCCCGC+CGG 0.517403 4:-509731 MsG0480018127.01.T01:CDS
ATTTGGTATAAAACTGCTTG+TGG 0.517696 4:-506478 MsG0480018127.01.T01:three_prime_UTR
AAATGTGCACCACAATCTGC+AGG 0.517804 4:-506905 MsG0480018127.01.T01:CDS
GCTTTGTAATGCAGACAACC+TGG 0.519392 4:-507101 MsG0480018127.01.T01:intron
AGTACTACCTCTTCGGAAGA+AGG 0.521807 4:+509671 None:intergenic
CTCTATTAACCCAGCATCTG+GGG 0.521963 4:-506768 MsG0480018127.01.T01:three_prime_UTR
GCGGTGGGTTGAGGAGGAGG+AGG 0.522344 4:+509704 None:intergenic
GGTCCCCAAACAGGTGGTGG+CGG 0.523992 4:+508767 None:intergenic
GGTGAGATAGACACAGGAGC+AGG 0.526097 4:+508361 None:intergenic
TCTCCATTCTGTTGTAGGCA+AGG 0.527422 4:-506453 MsG0480018127.01.T01:three_prime_UTR
TGAAGGAAGTACTACCTCTT+CGG 0.528081 4:+509664 None:intergenic
TTCAAAGCTGAAAAGCCTAT+GGG 0.529789 4:-509484 MsG0480018127.01.T01:CDS
GGAGGAGGAGGAGCGCCGGC+GGG 0.531640 4:+509716 None:intergenic
TTGGCACCAGGAACAGCCAT+AGG 0.533854 4:+506354 None:intergenic
CCACCTGTTTGGGGACCACA+TGG 0.534905 4:-508761 MsG0480018127.01.T01:CDS
TGACTTATCAGTAGCTTGAA+GGG 0.534994 4:-506314 MsG0480018127.01.T01:three_prime_UTR
TCCACCCTTACCACCAGCAA+TGG 0.538447 4:-509742 MsG0480018127.01.T01:CDS
TGAAGAACAGATTTAGCCTC+GGG 0.546026 4:+509391 None:intergenic
TCCTTCTCCTTCTTCCGAAG+AGG 0.546449 4:-509678 MsG0480018127.01.T01:CDS
CGGCGGGAGGCCATTGCTGG+TGG 0.547212 4:+509732 None:intergenic
TAGCCTGCATATGGATCATA+CGG 0.548541 4:+508406 None:intergenic
TAAACAGGGTGTTGCAAGGA+GGG 0.548723 4:+507273 None:intergenic
AACATGAGCAGTGATGATAA+TGG 0.551137 4:+506197 None:intergenic
AGCATCTGGGGTTTATGACT+GGG 0.552350 4:-506756 MsG0480018127.01.T01:three_prime_UTR
CCTCCGCCACCACCTGTTTG+GGG 0.555676 4:-508770 MsG0480018127.01.T01:CDS
AACTGAGAAGCTTCAAAACC+AGG 0.556577 4:+509511 None:intergenic
CCTCCGTATGATCCATATGC+AGG 0.559113 4:-508409 MsG0480018127.01.T01:CDS
ATTCCTTGCCTACAACAGAA+TGG 0.560024 4:+506450 None:intergenic
ATCTGTTCTTCATACTGAGA+TGG 0.561919 4:-509380 MsG0480018127.01.T01:CDS
GAAGGAGAAGGAATAGCGGT+GGG 0.564113 4:+509689 None:intergenic
AAAAGATGGAACCTACCCTA+TGG 0.564455 4:-506370 MsG0480018127.01.T01:three_prime_UTR
AACACCTATGAAACTAATCT+GGG 0.566767 4:+506088 None:intergenic
AACTTCAAAACATTTGTCGA+TGG 0.568541 4:-509537 MsG0480018127.01.T01:CDS
TAACAGCACCCTGCAGATTG+TGG 0.570755 4:+506896 None:intergenic
CATTAATGAGGAAGAAGTCA+GGG 0.575202 4:-507231 MsG0480018127.01.T01:CDS
ATGAAGAACAGATTTAGCCT+CGG 0.577945 4:+509390 None:intergenic
AGTCATAAACCCCAGATGCT+GGG 0.579970 4:+506759 None:intergenic
TATGGATCATACGGAGGAGG+AGG 0.580137 4:+508415 None:intergenic
ATAGACACAGGAGCAGGCAT+TGG 0.580929 4:+508367 None:intergenic
CAATGATAATGAGAGTGGAA+AGG 0.592019 4:+505830 None:intergenic
GGCGGAGGATGAAAAGGAGA+CGG 0.593468 4:+508785 None:intergenic
TGAATTGGAACATAACTGCT+AGG 0.602093 4:+508340 None:intergenic
ACCTCTTCGGAAGAAGGAGA+AGG 0.602484 4:+509677 None:intergenic
CATTCATTCATGGCAGCCAA+CGG 0.603790 4:-509767 MsG0480018127.01.T01:exon
CCAATAAACAGGGTGTTGCA+AGG 0.603873 4:+507269 None:intergenic
ACTGGAGCTCCATTGGCACC+AGG 0.605650 4:+506342 None:intergenic
CTTGGGAGAGAACATTAATG+AGG 0.606113 4:-507243 MsG0480018127.01.T01:CDS
GCATATGGATCATACGGAGG+AGG 0.606969 4:+508412 None:intergenic
TGAAGATTATAAGGCAGGAG+AGG 0.609049 4:-507067 MsG0480018127.01.T01:CDS
TGCCAATTGAACCAGAACTT+GGG 0.610282 4:+506872 None:intergenic
TTTGTGTTAGTTTACCCATG+TGG 0.614238 4:+508746 None:intergenic
GACTTATCAGTAGCTTGAAG+GGG 0.615446 4:-506313 MsG0480018127.01.T01:three_prime_UTR
TGGCACCAGGAACAGCCATA+GGG 0.617677 4:+506355 None:intergenic
TTGAAGAGAGCAAAACCCAT+AGG 0.622823 4:+509469 None:intergenic
TTAGCAGCAATAGCTTGATG+AGG 0.625830 4:+509442 None:intergenic
AGAAGGAGAAGGAATAGCGG+TGG 0.646815 4:+509688 None:intergenic
AAACAAATGAAAGAAACTCA+CGG 0.653052 4:+506644 None:intergenic
CCATGTGGTCCCCAAACAGG+TGG 0.654893 4:+508761 None:intergenic
CACCTGTTTGGGGACCACAT+GGG 0.665991 4:-508760 MsG0480018127.01.T01:intron
TGTTTAGAGTAAAACGACAC+CGG 0.666550 4:-509855 MsG0480018127.01.T01:five_prime_UTR
TCCCAAGTTCCCAATAAACA+GGG 0.668529 4:+507259 None:intergenic
GTTCTGGTTCAATTGGCATG+CGG 0.674324 4:-506867 MsG0480018127.01.T01:CDS
AATGTGCACCACAATCTGCA+GGG 0.681242 4:-506904 MsG0480018127.01.T01:CDS
GTAAACGGTTACGAACAGCT+GGG 0.684153 4:-508835 MsG0480018127.01.T01:CDS
TAAACGGTTACGAACAGCTG+GGG 0.691927 4:-508834 MsG0480018127.01.T01:CDS
CTGCTAGGTGAGATAGACAC+AGG 0.695547 4:+508355 None:intergenic
ATAAACAGGGTGTTGCAAGG+AGG 0.695618 4:+507272 None:intergenic
ACCAGGAACAGCCATAGGGT+AGG 0.709355 4:+506359 None:intergenic
ATTAATGAGGAAGAAGTCAG+GGG 0.719468 4:-507230 MsG0480018127.01.T01:CDS
GGAAGAAGGAGAAGGAATAG+CGG 0.729192 4:+509685 None:intergenic
CCTGCATATGGATCATACGG+AGG 0.734736 4:+508409 None:intergenic
TCATGTTAATGAATGCACAG+TGG 0.853491 4:-506181 MsG0480018127.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATTGATAAATAATATTAA+CGG + Chr4:508448-508467 None:intergenic 10.0%
!!! TTATTTTGATTTTTTTTTGT+AGG - Chr4:506908-506927 MsG0480018127.01.T01:CDS 10.0%
!! GAAAAAATATGATGTTTAAA+GGG - Chr4:508310-508329 MsG0480018127.01.T01:intron 15.0%
!!! TACAATATCCTTTTTTATTA+TGG - Chr4:508955-508974 MsG0480018127.01.T01:intron 15.0%
!!! TCAATTTTTATTCAATTATG+TGG - Chr4:506496-506515 MsG0480018127.01.T01:three_prime_UTR 15.0%
!! AACCAATATTACTACATTAT+AGG - Chr4:509531-509550 MsG0480018127.01.T01:CDS 20.0%
!! AGAAAAAAATCAAGAAAACA+AGG + Chr4:508992-509011 None:intergenic 20.0%
!! ATCCTATAATGTAGTAATAT+TGG + Chr4:509536-509555 None:intergenic 20.0%
!! ATGAAAAATACATGGTAAAT+TGG + Chr4:509120-509139 None:intergenic 20.0%
!! CAAACTTTCAGTTAATAATA+TGG + Chr4:507329-507348 None:intergenic 20.0%
!! GGAAAAAATATGATGTTTAA+AGG - Chr4:508309-508328 MsG0480018127.01.T01:intron 20.0%
!! TTAAGCAAATGAAGATTATA+AGG - Chr4:508722-508741 MsG0480018127.01.T01:intron 20.0%
!! TTTAGACTAAATTATGGTAT+TGG - Chr4:506753-506772 MsG0480018127.01.T01:three_prime_UTR 20.0%
!!! AATTTACCAATACTTAGTTT+TGG + Chr4:509199-509218 None:intergenic 20.0%
!!! GTTTTTCTCTAATAAAGTAA+GGG - Chr4:507821-507840 MsG0480018127.01.T01:intron 20.0%
!!! TGAAAGTTTGTTTGTTTTTA+TGG - Chr4:507339-507358 MsG0480018127.01.T01:intron 20.0%
!!! TGATTTTTTTTTGTAGGAAT+AGG - Chr4:506914-506933 MsG0480018127.01.T01:CDS 20.0%
!!! TGTTTTTCTCTAATAAAGTA+AGG - Chr4:507820-507839 MsG0480018127.01.T01:intron 20.0%
!!! TTTAAAATAATCACATGTGT+CGG + Chr4:506626-506645 None:intergenic 20.0%
!!! TTTTGGCATTGAAAAATATA+AGG + Chr4:509233-509252 None:intergenic 20.0%
! AAAAATCTCTTTGTTAAACG+AGG - Chr4:506446-506465 MsG0480018127.01.T01:three_prime_UTR 25.0%
! AAAACAATGTTGTCAAATAG+TGG - Chr4:507118-507137 MsG0480018127.01.T01:intron 25.0%
! AAACAAATGAAAGAAACTCA+CGG + Chr4:509157-509176 None:intergenic 25.0%
! AATAAATAGAAGAAGAGTGA+AGG + Chr4:506154-506173 None:intergenic 25.0%
! AATATCAGACATGCATTTAT+CGG - Chr4:509672-509691 MsG0480018127.01.T01:intron 25.0%
! AGATATTCCAAAAATCCATT+TGG - Chr4:509399-509418 MsG0480018127.01.T01:CDS 25.0%
! ATCAATTTCTAACAGTTGAA+TGG + Chr4:508006-508025 None:intergenic 25.0%
! ATTGTATCTCAAAGTGAATA+TGG - Chr4:508101-508120 MsG0480018127.01.T01:intron 25.0%
! TATCAGTGATGAAAAATACA+TGG + Chr4:509128-509147 None:intergenic 25.0%
! TCTGTATACATTGGTATTTA+GGG - Chr4:509811-509830 MsG0480018127.01.T01:five_prime_UTR 25.0%
! TTCTGTATACATTGGTATTT+AGG - Chr4:509810-509829 MsG0480018127.01.T01:five_prime_UTR 25.0%
! TTGTATCTCAAAGTGAATAT+GGG - Chr4:508102-508121 MsG0480018127.01.T01:intron 25.0%
! TTTATCAATGTTGACAATTG+CGG + Chr4:507282-507301 None:intergenic 25.0%
! TTTGAATTCAGAGTTAAGTT+TGG + Chr4:506848-506867 None:intergenic 25.0%
!! GGATTGATATTTTCTCTTTT+TGG - Chr4:507969-507988 MsG0480018127.01.T01:intron 25.0%
!! GTTTTTATGGTCTAGATATA+TGG - Chr4:507352-507371 MsG0480018127.01.T01:intron 25.0%
!! TTAAACTGTTAATGCTACTT+TGG - Chr4:507494-507513 MsG0480018127.01.T01:intron 25.0%
!! TTAGACTTTTCTGTATACAT+TGG - Chr4:509802-509821 MsG0480018127.01.T01:five_prime_UTR 25.0%
!! TTTGTTTGAAATGTGCTTTA+TGG - Chr4:509776-509795 MsG0480018127.01.T01:exon 25.0%
!!! AACATCATATTTTTTCCAGT+AGG + Chr4:508306-508325 None:intergenic 25.0%
!!! AACTAAGTATTGGTAAATTC+AGG - Chr4:509200-509219 MsG0480018127.01.T01:intron 25.0%
!!! ACTAAGTATTGGTAAATTCA+GGG - Chr4:509201-509220 MsG0480018127.01.T01:intron 25.0%
!!! CAATTCAATTATGCTTTTTC+AGG - Chr4:506190-506209 MsG0480018127.01.T01:three_prime_UTR 25.0%
!!! TCTATTTTAACTACCAAAGA+AGG - Chr4:508218-508237 MsG0480018127.01.T01:intron 25.0%
!!! TCTTTTTCCAAATGGATTTT+TGG + Chr4:509409-509428 None:intergenic 25.0%
!!! TTGCTTTTGATCAAAGTAAA+CGG - Chr4:506948-506967 MsG0480018127.01.T01:intron 25.0%
AAACACCTATGAAACTAATC+TGG + Chr4:509714-509733 None:intergenic 30.0%
AACACCTATGAAACTAATCT+GGG + Chr4:509713-509732 None:intergenic 30.0%
AACTTCAAAACATTTGTCGA+TGG - Chr4:506261-506280 MsG0480018127.01.T01:three_prime_UTR 30.0%
AAGTGACACTCATTATGAAA+CGG + Chr4:507670-507689 None:intergenic 30.0%
ACATTCATTCAGCAATTTAG+AGG + Chr4:508264-508283 None:intergenic 30.0%
ATTACAGAGCTTATAGCTAA+CGG + Chr4:507616-507635 None:intergenic 30.0%
ATTTGGTATAAAACTGCTTG+TGG - Chr4:509320-509339 MsG0480018127.01.T01:intron 30.0%
CAGATGCTCCATAATAAAAA+AGG + Chr4:508966-508985 None:intergenic 30.0%
CCATTTGGAAAAAGAAAAGA+TGG - Chr4:509414-509433 MsG0480018127.01.T01:CDS 30.0%
CGGATTTACTTCAAAAGTTA+GGG - Chr4:505963-505982 MsG0480018127.01.T01:three_prime_UTR 30.0%
CGGTGATTTAGACTAAATTA+TGG - Chr4:506747-506766 MsG0480018127.01.T01:three_prime_UTR 30.0%
CGTGATTTATAAAGATAAGG+CGG - Chr4:507576-507595 MsG0480018127.01.T01:intron 30.0%
CTCATACTTTGCATTCAATT+TGG - Chr4:509303-509322 MsG0480018127.01.T01:intron 30.0%
CTTAATTGCTATATTCTGCT+TGG - Chr4:508166-508185 MsG0480018127.01.T01:intron 30.0%
GAAAAGATCCAGACAATAAA+AGG + Chr4:508810-508829 None:intergenic 30.0%
GATTGATACTCATTCATTCA+TGG - Chr4:506021-506040 MsG0480018127.01.T01:three_prime_UTR 30.0%
GCTCGTGATTTATAAAGATA+AGG - Chr4:507573-507592 MsG0480018127.01.T01:intron 30.0%
GGTTCGAACCATATTTATAA+CGG - Chr4:506211-506230 MsG0480018127.01.T01:three_prime_UTR 30.0%
GTTCGAACCATATTTATAAC+GGG - Chr4:506212-506231 MsG0480018127.01.T01:three_prime_UTR 30.0%
GTTCGAAGTATATTCATAGT+TGG - Chr4:508352-508371 MsG0480018127.01.T01:CDS 30.0%
GTTGTGAAATAGTTGCTATA+GGG - Chr4:507204-507223 MsG0480018127.01.T01:intron 30.0%
TAGTTTCATAGGTGTTTAGA+TGG - Chr4:509717-509736 MsG0480018127.01.T01:CDS 30.0%
TCAATGCCAAAACTAAGTAT+TGG - Chr4:509190-509209 MsG0480018127.01.T01:intron 30.0%
TCACTGCATGATAATAACTA+AGG + Chr4:508383-508402 None:intergenic 30.0%
TCTTAATCTATGTGCCAAAA+TGG - Chr4:507888-507907 MsG0480018127.01.T01:intron 30.0%
TGGCATCATATACATACATT+TGG - Chr4:509637-509656 MsG0480018127.01.T01:intron 30.0%
TGTTGTGAAATAGTTGCTAT+AGG - Chr4:507203-507222 MsG0480018127.01.T01:intron 30.0%
TTACTTCAAAAGTTAGGGTT+AGG - Chr4:505968-505987 MsG0480018127.01.T01:three_prime_UTR 30.0%
TTATGTGTTTGTGTCATGTT+TGG - Chr4:506669-506688 MsG0480018127.01.T01:three_prime_UTR 30.0%
TTCTATGCTGTGTCATATAT+TGG - Chr4:508656-508675 MsG0480018127.01.T01:intron 30.0%
TTGGATTAATCTGTTGAACT+TGG - Chr4:508675-508694 MsG0480018127.01.T01:intron 30.0%
TTGGCACATAGATTAAGAAA+TGG + Chr4:507886-507905 None:intergenic 30.0%
TTGTGAAATAGTTGCTATAG+GGG - Chr4:507205-507224 MsG0480018127.01.T01:intron 30.0%
! AAAAGTTGGAGTACTTATTG+AGG + Chr4:507770-507789 None:intergenic 30.0%
! AAAGTTGGAGTACTTATTGA+GGG + Chr4:507769-507788 None:intergenic 30.0%
! CCATCTTTTCTTTTTCCAAA+TGG + Chr4:509417-509436 None:intergenic 30.0%
! GAAAATTCTGAGAGAAAAGT+TGG + Chr4:507784-507803 None:intergenic 30.0%
! GTATTTTTCATCACTGATAC+TGG - Chr4:509129-509148 MsG0480018127.01.T01:intron 30.0%
! GTTTTACATACACACTGAAA+AGG + Chr4:508594-508613 None:intergenic 30.0%
! TATTTGTGCCTTTTATTGTC+TGG - Chr4:508799-508818 MsG0480018127.01.T01:CDS 30.0%
!! TCATAATGAGTGTCACTTTA+GGG - Chr4:507672-507691 MsG0480018127.01.T01:intron 30.0%
!! TTCATAATGAGTGTCACTTT+AGG - Chr4:507671-507690 MsG0480018127.01.T01:intron 30.0%
!!! AGCATTTGTCTTTGTTTTGT+CGG - Chr4:508131-508150 MsG0480018127.01.T01:intron 30.0%
!!! CCTAACTTTTGAAGTAAATC+CGG + Chr4:505965-505984 None:intergenic 30.0%
!!! TGATGCTTTCCTTATTTTCA+TGG - Chr4:509912-509931 MsG0480018127.01.T01:five_prime_UTR 30.0%
!!! TTTCCTTATTTTCATGGCAT+GGG - Chr4:509918-509937 MsG0480018127.01.T01:five_prime_UTR 30.0%
AAACGACACTCATTGTGAAA+TGG - Chr4:507929-507948 MsG0480018127.01.T01:intron 35.0%
AACATGAGCAGTGATGATAA+TGG + Chr4:509604-509623 None:intergenic 35.0%
AATCTATGTGCCAAAATGGA+GGG - Chr4:507892-507911 MsG0480018127.01.T01:intron 35.0%
ACAACACATGAACCTAAAGT+TGG + Chr4:509869-509888 None:intergenic 35.0%
ACATTAATGAGGAAGAAGTC+AGG - Chr4:508566-508585 MsG0480018127.01.T01:intron 35.0%
ATCTCAAAGTGAATATGGGA+GGG - Chr4:508106-508125 MsG0480018127.01.T01:intron 35.0%
ATCTGTTCTTCATACTGAGA+TGG - Chr4:506418-506437 MsG0480018127.01.T01:three_prime_UTR 35.0%
ATCTTCATTTGCTTAAAGCC+AGG + Chr4:508718-508737 None:intergenic 35.0%
ATGAAGAACAGATTTAGCCT+CGG + Chr4:506411-506430 None:intergenic 35.0%
ATGACTTATCAGTAGCTTGA+AGG - Chr4:509483-509502 MsG0480018127.01.T01:CDS 35.0%
ATGTGTTATGTACATCCTAC+TGG - Chr4:508288-508307 MsG0480018127.01.T01:intron 35.0%
ATTAATGAGGAAGAAGTCAG+GGG - Chr4:508568-508587 MsG0480018127.01.T01:intron 35.0%
ATTTGAACAAACCTCTACCT+TGG + Chr4:506802-506821 None:intergenic 35.0%
CACACACACATATATAGATG+AGG + Chr4:507078-507097 None:intergenic 35.0%
CATTAATGAGGAAGAAGTCA+GGG - Chr4:508567-508586 MsG0480018127.01.T01:intron 35.0%
CCGGATTTACTTCAAAAGTT+AGG - Chr4:505962-505981 MsG0480018127.01.T01:three_prime_UTR 35.0%
CTTATGGTTACGCTAATACT+TGG - Chr4:508833-508852 MsG0480018127.01.T01:CDS 35.0%
CTTGGAGTTTCAACAAATCA+CGG + Chr4:506784-506803 None:intergenic 35.0%
GCAAATGAAGATTATAAGGC+AGG - Chr4:508726-508745 MsG0480018127.01.T01:intron 35.0%
TAATCTATGTGCCAAAATGG+AGG - Chr4:507891-507910 MsG0480018127.01.T01:intron 35.0%
TACTGATAAGTCATTGCTAC+TGG + Chr4:509477-509496 None:intergenic 35.0%
TAGATGGCGTTATCATTTGT+AGG - Chr4:509733-509752 MsG0480018127.01.T01:CDS 35.0%
TAGCAGTTATGTTCCAATTC+AGG - Chr4:507460-507479 MsG0480018127.01.T01:intron 35.0%
TATCTCAAAGTGAATATGGG+AGG - Chr4:508105-508124 MsG0480018127.01.T01:intron 35.0%
TCAACTATGAATCACGTACA+AGG + Chr4:506698-506717 None:intergenic 35.0%
TCATGTTAATGAATGCACAG+TGG - Chr4:509617-509636 MsG0480018127.01.T01:intron 35.0%
TCTCACAATAAGTGCATGTT+TGG - Chr4:506719-506738 MsG0480018127.01.T01:three_prime_UTR 35.0%
TCTCTCTCTTTAACATCTTC+TGG + Chr4:506242-506261 None:intergenic 35.0%
TGAATTGGAACATAACTGCT+AGG + Chr4:507461-507480 None:intergenic 35.0%
TGACTTATCAGTAGCTTGAA+GGG - Chr4:509484-509503 MsG0480018127.01.T01:CDS 35.0%
TGCTGCTAAAGATATTCTTC+AGG - Chr4:506370-506389 MsG0480018127.01.T01:three_prime_UTR 35.0%
TGCTTTAATCTTGCCTTCTT+TGG + Chr4:508234-508253 None:intergenic 35.0%
TGGAAGACCCGTTATAAATA+TGG + Chr4:506222-506241 None:intergenic 35.0%
TTCAAAGCTGAAAAGCCTAT+GGG - Chr4:506314-506333 MsG0480018127.01.T01:three_prime_UTR 35.0%
TTTCAAAGCTGAAAAGCCTA+TGG - Chr4:506313-506332 MsG0480018127.01.T01:three_prime_UTR 35.0%
! AGAAAAACCGATATTTTCCG+CGG - Chr4:507255-507274 MsG0480018127.01.T01:CDS 35.0%
! GTAGAGGTTTGTTCAAATCA+TGG - Chr4:506804-506823 MsG0480018127.01.T01:three_prime_UTR 35.0%
! TAAGTGCATGTTTGGAATGA+CGG - Chr4:506727-506746 MsG0480018127.01.T01:three_prime_UTR 35.0%
! TCTGGATCTTTTCTGACTTA+TGG - Chr4:508817-508836 MsG0480018127.01.T01:CDS 35.0%
! TGTTTAGAGTAAAACGACAC+CGG - Chr4:505943-505962 MsG0480018127.01.T01:three_prime_UTR 35.0%
! TTTGTGTTAGTTTACCCATG+TGG + Chr4:507055-507074 None:intergenic 35.0%
!! TCTCAAGTTCAAGTTGAACT+TGG + Chr4:505921-505940 None:intergenic 35.0%
!! TTCACAATGAGTGTCGTTTA+AGG + Chr4:507928-507947 None:intergenic 35.0%
!!! CTTTCCTTATTTTCATGGCA+TGG - Chr4:509917-509936 MsG0480018127.01.T01:five_prime_UTR 35.0%
AAAAGATGGAACCTACCCTA+TGG - Chr4:509428-509447 MsG0480018127.01.T01:CDS 40.0%
AAAGCCATTCTCACCTGAAT+TGG + Chr4:507476-507495 None:intergenic 40.0%
AACATTTGTCGATGGTTACC+TGG - Chr4:506269-506288 MsG0480018127.01.T01:three_prime_UTR 40.0%
AACTGAGAAGCTTCAAAACC+AGG + Chr4:506290-506309 None:intergenic 40.0%
AATGGAGGGAGTAGTTGAAA+AGG - Chr4:507947-507966 MsG0480018127.01.T01:intron 40.0%
ACCCTGTTTATTGGGAACTT+GGG - Chr4:508538-508557 MsG0480018127.01.T01:intron 40.0%
ATGCCAATTGAACCAGAACT+TGG + Chr4:508930-508949 None:intergenic 40.0%
ATGCTTATCCAAACAGGCAT+TGG - Chr4:509834-509853 MsG0480018127.01.T01:five_prime_UTR 40.0%
ATGGAGGGAGTAGTTGAAAA+GGG - Chr4:507948-507967 MsG0480018127.01.T01:intron 40.0%
ATTCCTTGCCTACAACAGAA+TGG + Chr4:509351-509370 None:intergenic 40.0%
CACATCCTGCAATAGGTTAT+TGG + Chr4:508862-508881 None:intergenic 40.0%
CACTATTCACATCCTGCAAT+AGG + Chr4:508869-508888 None:intergenic 40.0%
CTAGTTGCACTGAACAATAG+TGG + Chr4:507237-507256 None:intergenic 40.0%
CTTGCAACACCCTGTTTATT+GGG - Chr4:508530-508549 MsG0480018127.01.T01:intron 40.0%
CTTGGGAGAGAACATTAATG+AGG - Chr4:508555-508574 MsG0480018127.01.T01:intron 40.0%
GACACTCATTATGAAACGGA+AGG + Chr4:507666-507685 None:intergenic 40.0%
GACACTCATTGTGAAATGGA+GGG - Chr4:507933-507952 MsG0480018127.01.T01:intron 40.0%
GACTTATCAGTAGCTTGAAG+GGG - Chr4:509485-509504 MsG0480018127.01.T01:CDS 40.0%
GCTGGGGATTATAATCATAC+TGG - Chr4:506980-506999 MsG0480018127.01.T01:intron 40.0%
GGTATCCAATAACCTATTGC+AGG - Chr4:508854-508873 MsG0480018127.01.T01:CDS 40.0%
GTACTTATTGAGGGCAAAGT+TGG + Chr4:507760-507779 None:intergenic 40.0%
TAGCCTGCATATGGATCATA+CGG + Chr4:507395-507414 None:intergenic 40.0%
TCCCAAGTTCCCAATAAACA+GGG + Chr4:508542-508561 None:intergenic 40.0%
TCTCAAAGTGAATATGGGAG+GGG - Chr4:508107-508126 MsG0480018127.01.T01:intron 40.0%
TCTCTATTAACCCAGCATCT+GGG - Chr4:509029-509048 MsG0480018127.01.T01:intron 40.0%
TGAAGAACAGATTTAGCCTC+GGG + Chr4:506410-506429 None:intergenic 40.0%
TGAAGATTATAAGGCAGGAG+AGG - Chr4:508731-508750 MsG0480018127.01.T01:intron 40.0%
TGCCAATTGAACCAGAACTT+GGG + Chr4:508929-508948 None:intergenic 40.0%
TGGTATCTGCTTCCAACTTT+AGG - Chr4:509854-509873 MsG0480018127.01.T01:five_prime_UTR 40.0%
TGGTTTCTCCATTCTGTTGT+AGG - Chr4:509340-509359 MsG0480018127.01.T01:intron 40.0%
TGTCAATGTCGGTATTGTGT+CGG + Chr4:506573-506592 None:intergenic 40.0%
TGTTCCAATTCAGGTGAGAA+TGG - Chr4:507469-507488 MsG0480018127.01.T01:intron 40.0%
TTAGCAGCAATAGCTTGATG+AGG + Chr4:506359-506378 None:intergenic 40.0%
TTAGGGATGCTTATCCAAAC+AGG - Chr4:509828-509847 MsG0480018127.01.T01:five_prime_UTR 40.0%
TTCTCTATTAACCCAGCATC+TGG - Chr4:509028-509047 MsG0480018127.01.T01:intron 40.0%
TTGAAGAGAGCAAAACCCAT+AGG + Chr4:506332-506351 None:intergenic 40.0%
TTGTTGAAACTCCAAGGTAG+AGG - Chr4:506788-506807 MsG0480018127.01.T01:three_prime_UTR 40.0%
! GGCGATGACTTGATAATCAA+TGG + Chr4:509583-509602 None:intergenic 40.0%
! TTGTCTTTCTCCCTCCATTT+TGG + Chr4:507905-507924 None:intergenic 40.0%
!! ATCAGCAGAAGTGTCAATGT+CGG + Chr4:506584-506603 None:intergenic 40.0%
!! ATCCCAAGTTCTGGTTCAAT+TGG - Chr4:508924-508943 MsG0480018127.01.T01:intron 40.0%
!! CGTGATTTGTTGAAACTCCA+AGG - Chr4:506782-506801 MsG0480018127.01.T01:three_prime_UTR 40.0%
!! GGTTCCCAGATTAGTTTCAT+AGG - Chr4:509706-509725 MsG0480018127.01.T01:CDS 40.0%
!! TGAAGGAAGTACTACCTCTT+CGG + Chr4:506137-506156 None:intergenic 40.0%
AAATGTGCACCACAATCTGC+AGG - Chr4:508893-508912 MsG0480018127.01.T01:intron 45.0%
AATGTGCACCACAATCTGCA+GGG - Chr4:508894-508913 MsG0480018127.01.T01:intron 45.0%
AGCAGATACCAATGCCTGTT+TGG + Chr4:509845-509864 None:intergenic 45.0%
AGTAAACGGTTACGAACAGC+TGG - Chr4:506962-506981 MsG0480018127.01.T01:intron 45.0%
AGTACTACCTCTTCGGAAGA+AGG + Chr4:506130-506149 None:intergenic 45.0%
AGTCATAAACCCCAGATGCT+GGG + Chr4:509042-509061 None:intergenic 45.0%
CACCCTGTTTATTGGGAACT+TGG - Chr4:508537-508556 MsG0480018127.01.T01:intron 45.0%
CAGCCCATGCCATGAAAATA+AGG + Chr4:509924-509943 None:intergenic 45.0%
CATTCATTCATGGCAGCCAA+CGG - Chr4:506031-506050 MsG0480018127.01.T01:three_prime_UTR 45.0%
CATTTATCGGCAGCATGTGT+TGG - Chr4:509685-509704 MsG0480018127.01.T01:CDS 45.0%
CCTTGCAACACCCTGTTTAT+TGG - Chr4:508529-508548 MsG0480018127.01.T01:intron 45.0%
CGACACTCATTGTGAAATGG+AGG - Chr4:507932-507951 MsG0480018127.01.T01:intron 45.0%
CTCCCAAGTTCCCAATAAAC+AGG + Chr4:508543-508562 None:intergenic 45.0%
CTCTATTAACCCAGCATCTG+GGG - Chr4:509030-509049 MsG0480018127.01.T01:intron 45.0%
GAACAGAAGAGCTGTGTCAA+AGG + Chr4:508621-508640 None:intergenic 45.0%
GACATTGACACTTCTGCTGA+TGG - Chr4:506583-506602 MsG0480018127.01.T01:three_prime_UTR 45.0%
GAGCTCAAAATTGCACACGA+AGG + Chr4:507557-507576 None:intergenic 45.0%
GCTTTGTAATGCAGACAACC+TGG - Chr4:508697-508716 MsG0480018127.01.T01:intron 45.0%
GGAAGAAGGAGAAGGAATAG+CGG + Chr4:506116-506135 None:intergenic 45.0%
GTAAACGGTTACGAACAGCT+GGG - Chr4:506963-506982 MsG0480018127.01.T01:intron 45.0%
TAAACGGTTACGAACAGCTG+GGG - Chr4:506964-506983 MsG0480018127.01.T01:intron 45.0%
TCTCCATTCTGTTGTAGGCA+AGG - Chr4:509345-509364 MsG0480018127.01.T01:intron 45.0%
! AGCATCTGGGGTTTATGACT+GGG - Chr4:509042-509061 MsG0480018127.01.T01:intron 45.0%
!! ATAAACAGGGTGTTGCAAGG+AGG + Chr4:508529-508548 None:intergenic 45.0%
!! CCAATAAACAGGGTGTTGCA+AGG + Chr4:508532-508551 None:intergenic 45.0%
!! GGATATGCTTTTTGATCCCG+AGG - Chr4:506391-506410 MsG0480018127.01.T01:three_prime_UTR 45.0%
!! GTTCTGGTTCAATTGGCATG+CGG - Chr4:508931-508950 MsG0480018127.01.T01:intron 45.0%
!! TAAACAGGGTGTTGCAAGGA+GGG + Chr4:508528-508547 None:intergenic 45.0%
ACCTCTTCGGAAGAAGGAGA+AGG + Chr4:506124-506143 None:intergenic 50.0%
AGAAGGAGAAGGAATAGCGG+TGG + Chr4:506113-506132 None:intergenic 50.0%
ATAGACACAGGAGCAGGCAT+TGG + Chr4:507434-507453 None:intergenic 50.0%
ATGTTGACAATTGCGGACCG+CGG + Chr4:507275-507294 None:intergenic 50.0%
CAGTCATAAACCCCAGATGC+TGG + Chr4:509043-509062 None:intergenic 50.0%
CATTGCTACTGGAGCTCCAT+TGG + Chr4:509466-509485 None:intergenic 50.0%
CCTCCGTATGATCCATATGC+AGG - Chr4:507389-507408 MsG0480018127.01.T01:intron 50.0%
CCTGCATATGGATCATACGG+AGG + Chr4:507392-507411 None:intergenic 50.0%
CTGCTAGGTGAGATAGACAC+AGG + Chr4:507446-507465 None:intergenic 50.0%
CTGTCCTTGAAGTCCTGAAC+AGG - Chr4:508061-508080 MsG0480018127.01.T01:intron 50.0%
GAACTCTTCTGTGCCTGTTC+AGG + Chr4:508077-508096 None:intergenic 50.0%
GAAGGAGAAGGAATAGCGGT+GGG + Chr4:506112-506131 None:intergenic 50.0%
GCAACAGGATAGCCTGCATA+TGG + Chr4:507404-507423 None:intergenic 50.0%
GCATATGGATCATACGGAGG+AGG + Chr4:507389-507408 None:intergenic 50.0%
TAACAGCACCCTGCAGATTG+TGG + Chr4:508905-508924 None:intergenic 50.0%
TATGGATCATACGGAGGAGG+AGG + Chr4:507386-507405 None:intergenic 50.0%
TCCTTCTCCTTCTTCCGAAG+AGG - Chr4:506120-506139 MsG0480018127.01.T01:three_prime_UTR 50.0%
TGTGCCTGTTCAGGACTTCA+AGG + Chr4:508068-508087 None:intergenic 50.0%
TTGCGGACCGCGGAAAATAT+CGG + Chr4:507265-507284 None:intergenic 50.0%
! CAGCATCTGGGGTTTATGAC+TGG - Chr4:509041-509060 MsG0480018127.01.T01:intron 50.0%
!! GGCATTGGTACTTGTGCAAC+AGG + Chr4:507419-507438 None:intergenic 50.0%
!! GGTGCTGTTATCCCAAGTTC+TGG - Chr4:508915-508934 MsG0480018127.01.T01:intron 50.0%
ACCAGGAACAGCCATAGGGT+AGG + Chr4:509442-509461 None:intergenic 55.0%
ACCTACCCTATGGCTGTTCC+TGG - Chr4:509438-509457 MsG0480018127.01.T01:CDS 55.0%
CACCTGTTTGGGGACCACAT+GGG - Chr4:507038-507057 MsG0480018127.01.T01:intron 55.0%
GAGGCCATTGCTGGTGGTAA+GGG + Chr4:506063-506082 None:intergenic 55.0%
GGCGGAGGATGAAAAGGAGA+CGG + Chr4:507016-507035 None:intergenic 55.0%
GGTGAGATAGACACAGGAGC+AGG + Chr4:507440-507459 None:intergenic 55.0%
TACCCATGTGGTCCCCAAAC+AGG + Chr4:507043-507062 None:intergenic 55.0%
TCCACCCTTACCACCAGCAA+TGG - Chr4:506056-506075 MsG0480018127.01.T01:three_prime_UTR 55.0%
TGGCACCAGGAACAGCCATA+GGG + Chr4:509446-509465 None:intergenic 55.0%
TTGGCACCAGGAACAGCCAT+AGG + Chr4:509447-509466 None:intergenic 55.0%
! ATGGCTGTTCCTGGTGCCAA+TGG - Chr4:509447-509466 MsG0480018127.01.T01:CDS 55.0%
!! GAAGGAATAGCGGTGGGTTG+AGG + Chr4:506106-506125 None:intergenic 55.0%
ACTGGAGCTCCATTGGCACC+AGG + Chr4:509459-509478 None:intergenic 60.0%
ATCCTCCGCCACCACCTGTT+TGG - Chr4:507026-507045 MsG0480018127.01.T01:intron 60.0%
CCACCTGTTTGGGGACCACA+TGG - Chr4:507037-507056 MsG0480018127.01.T01:intron 60.0%
CCATGTGGTCCCCAAACAGG+TGG + Chr4:507040-507059 None:intergenic 60.0%
GCCATTGCTGGTGGTAAGGG+TGG + Chr4:506060-506079 None:intergenic 60.0%
GGAGGCCATTGCTGGTGGTA+AGG + Chr4:506064-506083 None:intergenic 60.0%
GGATCATACGGAGGAGGAGG+TGG + Chr4:507383-507402 None:intergenic 60.0%
GTGGTAAGGGTGGATGCCGT+TGG + Chr4:506050-506069 None:intergenic 60.0%
TCATACGGAGGAGGAGGTGG+TGG + Chr4:507380-507399 None:intergenic 60.0%
TCCTCCGCCACCACCTGTTT+GGG - Chr4:507027-507046 MsG0480018127.01.T01:intron 60.0%
TGTGGTCCCCAAACAGGTGG+TGG + Chr4:507037-507056 None:intergenic 60.0%
!! ATAGCGGTGGGTTGAGGAGG+AGG + Chr4:506100-506119 None:intergenic 60.0%
!! GGAATAGCGGTGGGTTGAGG+AGG + Chr4:506103-506122 None:intergenic 60.0%
!! GGTGGTGGCGGAGGATGAAA+AGG + Chr4:507022-507041 None:intergenic 60.0%
CCTCCGCCACCACCTGTTTG+GGG - Chr4:507028-507047 MsG0480018127.01.T01:intron 65.0%
! GGTCCCCAAACAGGTGGTGG+CGG + Chr4:507034-507053 None:intergenic 65.0%
! TTGAGGAGGAGGAGGAGCGC+CGG + Chr4:506089-506108 None:intergenic 65.0%
CACCAGCAATGGCCTCCCGC+CGG - Chr4:506067-506086 MsG0480018127.01.T01:three_prime_UTR 70.0%
!! CCCCAAACAGGTGGTGGCGG+AGG + Chr4:507031-507050 None:intergenic 70.0%
!! GCGGTGGGTTGAGGAGGAGG+AGG + Chr4:506097-506116 None:intergenic 70.0%
CGGCGGGAGGCCATTGCTGG+TGG + Chr4:506069-506088 None:intergenic 75.0%
!! AGGAGGAGGAGGAGCGCCGG+CGG + Chr4:506086-506105 None:intergenic 75.0%
! CGCCGGCGGGAGGCCATTGC+TGG + Chr4:506072-506091 None:intergenic 80.0%
!!! GGAGGAGGAGGAGCGCCGGC+GGG + Chr4:506085-506104 None:intergenic 80.0%
!!! GGAGGAGGAGCGCCGGCGGG+AGG + Chr4:506082-506101 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr4 gene 505842 509978 505842 ID=MsG0480018127.01;Name=MsG0480018127.01
Chr4 mRNA 505842 509978 505842 ID=MsG0480018127.01.T01;Parent=MsG0480018127.01;Name=MsG0480018127.01.T01;_AED=0.41;_eAED=0.41;_QI=198|0.83|0.85|1|0.83|0.85|7|992|292
Chr4 exon 505842 506944 505842 ID=MsG0480018127.01.T01:exon:662;Parent=MsG0480018127.01.T01
Chr4 exon 507040 507109 507040 ID=MsG0480018127.01.T01:exon:661;Parent=MsG0480018127.01.T01
Chr4 exon 507218 507309 507218 ID=MsG0480018127.01.T01:exon:660;Parent=MsG0480018127.01.T01
Chr4 exon 508339 508453 508339 ID=MsG0480018127.01.T01:exon:659;Parent=MsG0480018127.01.T01
Chr4 exon 508761 508890 508761 ID=MsG0480018127.01.T01:exon:658;Parent=MsG0480018127.01.T01
Chr4 exon 509353 509608 509353 ID=MsG0480018127.01.T01:exon:657;Parent=MsG0480018127.01.T01
Chr4 exon 509676 509978 509676 ID=MsG0480018127.01.T01:exon:656;Parent=MsG0480018127.01.T01
Chr4 five_prime_UTR 509781 509978 509781 ID=MsG0480018127.01.T01:five_prime_utr;Parent=MsG0480018127.01.T01
Chr4 CDS 509676 509780 509676 ID=MsG0480018127.01.T01:cds;Parent=MsG0480018127.01.T01
Chr4 CDS 509353 509608 509353 ID=MsG0480018127.01.T01:cds;Parent=MsG0480018127.01.T01
Chr4 CDS 508761 508890 508761 ID=MsG0480018127.01.T01:cds;Parent=MsG0480018127.01.T01
Chr4 CDS 508339 508453 508339 ID=MsG0480018127.01.T01:cds;Parent=MsG0480018127.01.T01
Chr4 CDS 507218 507309 507218 ID=MsG0480018127.01.T01:cds;Parent=MsG0480018127.01.T01
Chr4 CDS 507040 507109 507040 ID=MsG0480018127.01.T01:cds;Parent=MsG0480018127.01.T01
Chr4 CDS 506834 506944 506834 ID=MsG0480018127.01.T01:cds;Parent=MsG0480018127.01.T01
Chr4 three_prime_UTR 505842 506833 505842 ID=MsG0480018127.01.T01:three_prime_utr;Parent=MsG0480018127.01.T01
Gene Sequence

>MsG0480018127.01.T01

ATGGCAGCCAACGGCATCCACCCTTACCACCAGCAATGGCCTCCCGCCGGCGCTCCTCCTCCTCCTCAACCCACCGCTATTCCTTCTCCTTCTTCCGAAGAGGTAGTTCGAACCATATTTATAACGGGTCTTCCAGAAGATGTTAAAGAGAGAGAACTTCAAAACATTTGTCGATGGTTACCTGGTTTTGAAGCTTCTCAGTTGAATTTCAAAGCTGAAAAGCCTATGGGTTTTGCTCTCTTCAATTCTCCTCATCAAGCTATTGCTGCTAAAGATATTCTTCAGGATATGCTTTTTGATCCCGAGGCTAAATCTGTTCTTCATACTGAGATGGCTAAGAAAAATCTCTTTGTTAAACGAGGAATAGGAGCTGATGCAGTTGCTTTTGATCAAAGTAAACGGTTACGAACAGCTGGGGATTATAATCATACTGGTTATGTAACTCCGTCTCCTTTTCATCCTCCGCCACCACCTGTTTGGGGACCACATGGATATATGGCTCCACCACCTCCTCCTCCGTATGATCCATATGCAGGCTATCCTGTTGCACAAGTACCAATGCCTGCTCCTGTGTCTATCTCACCTAGCAGTTATGTTCCAATTCAGAACACTAAAGATAACCCTCCTTGCAACACCCTGTTTATTGGGAACTTGGGAGAGAACATTAATGAGGAAGAAGTCAGGGGCCTTTTCAGTGTACAACCTGGCTTTAAGCAAATGAAGATTATAAGGCAGGAGAGGCATACAGTTTGCTTCATTGAGTTTGAAGATGTGAATAGTGCTACAAATGTGCACCACAATCTGCAGGGTGCTGTTATCCCAAGTTCTGGTTCAATTGGCATGCGGATACAATATCCTTTTTTATTATGGAGCATCTGA
Protein sequence

>MsG0480018127.01.T01

MAANGIHPYHQQWPPAGAPPPPQPTAIPSPSSEEVVRTIFITGLPEDVKERELQNICRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFVKRGIGADAVAFDQSKRLRTAGDYNHTGYVTPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSISPSSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYPFLLWSI*