AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023683.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023683.01.T01 MTR_8g099415 96.859 382 12 0 5 386 2 383 0.0 750
MsG0480023683.01.T01 MTR_8g099415 96.859 382 12 0 5 386 2 383 0.0 748
MsG0480023683.01.T01 MTR_0050s0150 65.753 73 17 2 299 370 48 113 6.90e-20 85.5
MsG0480023683.01.T01 MTR_4g116170 32.673 202 125 6 74 266 335 534 3.27e-14 74.7
MsG0480023683.01.T01 MTR_4g116170 26.277 411 240 12 6 383 53 433 2.51e-13 71.6
MsG0480023683.01.T01 MTR_4g116170 25.478 314 206 7 70 378 186 476 1.82e-12 69.3
MsG0480023683.01.T01 MTR_4g009870 29.206 315 180 10 82 383 26 310 1.64e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023683.01.T01 AT4G23840 54.922 386 171 2 4 386 2 387 1.86e-117 354
MsG0480023683.01.T01 AT1G15740 25.373 402 246 11 6 378 61 437 5.72e-12 67.8

Find 94 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATATTTCCTGTCCTTTC+TGG 0.094337 4:+88554320 MsG0480023683.01.T01:CDS
TAGATAGATCCAAGTCTTTA+AGG 0.165934 4:-88553411 None:intergenic
TCTGCTCTTTGGCCTATTTC+AGG 0.170178 4:+88553379 MsG0480023683.01.T01:CDS
AATTCCAGCATCATTAAATT+TGG 0.189072 4:-88553440 None:intergenic
TGGATTAGCTCTGCTGGATT+AGG 0.225722 4:+88554498 MsG0480023683.01.T01:CDS
TGTGATTTATGAAATGAAAT+TGG 0.227239 4:-88553036 None:intergenic
AGGCTATTCATTCCTGAAAT+AGG 0.242928 4:-88553391 None:intergenic
TTTCCTGTCCTTTCTGGACT+TGG 0.259429 4:+88554326 MsG0480023683.01.T01:CDS
GCAGAATGGATGGCATATTT+AGG 0.291883 4:+88553301 MsG0480023683.01.T01:CDS
CTGAGCAATACAAACATTAA+AGG 0.295655 4:+88554633 MsG0480023683.01.T01:CDS
TTTGGTAGTGACACTGGTTT+TGG 0.301148 4:-88553506 None:intergenic
GAATCAATTCATCTGCTCTT+TGG 0.314335 4:+88553368 MsG0480023683.01.T01:CDS
ATATGTATTTGCATACAATA+AGG 0.315071 4:-88554304 None:intergenic
ATGCGCAACTTCTCTAAATT+AGG 0.317828 4:-88553481 None:intergenic
CAAGGTTCAAATAACGTAAA+TGG 0.324021 4:-88553333 None:intergenic
ATAAGGTTTCAGCTTCATTC+AGG 0.329578 4:-88554287 None:intergenic
GGATTAGCTCTGCTGGATTA+GGG 0.336187 4:+88554499 MsG0480023683.01.T01:CDS
TGCATCTTTAGCTTCGTTGC+AGG 0.344520 4:+88553597 MsG0480023683.01.T01:CDS
TAGTCCAATCAAGATTTAGA+TGG 0.370833 4:-88554140 None:intergenic
TGACCCATCTAAATCTTGAT+TGG 0.375554 4:+88554136 MsG0480023683.01.T01:CDS
TGCTCCAAATTTAATGATGC+TGG 0.407480 4:+88553436 MsG0480023683.01.T01:CDS
GGCAAGAAGCTTGACACCTT+TGG 0.409241 4:-88553524 None:intergenic
GTTTGAATCTGAGTGGTACT+TGG 0.409722 4:+88554478 MsG0480023683.01.T01:CDS
TTTCTGGACTTGGCCCATAC+CGG 0.410855 4:+88554336 MsG0480023683.01.T01:CDS
GTTGAGATGGTTGCATGTAT+TGG 0.420766 4:+88554441 MsG0480023683.01.T01:CDS
AGTGAAAGAATTTCAAGATT+GGG 0.421491 4:-88554540 None:intergenic
CATTCAAGAGATGTTAAATC+AGG 0.434747 4:-88554177 None:intergenic
ATCTACAACACATTGAACTC+TGG 0.436553 4:+88554061 MsG0480023683.01.T01:CDS
AGAGCGTCGGCGAGAGGAGA+AGG 0.439082 4:-88553175 None:intergenic
ATTGATTCTATTCTCAAAGA+TGG 0.441394 4:+88554222 MsG0480023683.01.T01:CDS
GGTACTTGGATTAGCTCTGC+TGG 0.447910 4:+88554492 MsG0480023683.01.T01:CDS
CAGCATGATGCCTTCATTGA+AGG 0.448423 4:+88554602 MsG0480023683.01.T01:CDS
TTCTGGACTTGGCCCATACC+GGG 0.448686 4:+88554337 MsG0480023683.01.T01:CDS
TAGTGAAAGAATTTCAAGAT+TGG 0.448765 4:-88554541 None:intergenic
ACACTTATCTCTTCTTGACT+TGG 0.459460 4:+88553555 MsG0480023683.01.T01:CDS
CACTGTGTTTGAAAACTTCG+AGG 0.465342 4:-88553240 None:intergenic
AAGATTTAGATGGGTCAACT+TGG 0.467493 4:-88554130 None:intergenic
GCATCATGCTGATATATAAG+AGG 0.469264 4:-88554590 None:intergenic
CAATCTCAGCTCATGTATGA+TGG 0.479343 4:+88554407 MsG0480023683.01.T01:CDS
AAATCAAATGGAAATGGAAA+AGG 0.480048 4:-88552988 None:intergenic
TTGGAATTTAGAAGAAGAAG+AGG 0.481118 4:-88553017 None:intergenic
TTTCAAACACAGTGTGGAAG+AGG 0.481180 4:+88553249 MsG0480023683.01.T01:CDS
CACTTATCTCTTCTTGACTT+GGG 0.484518 4:+88553556 MsG0480023683.01.T01:CDS
GCAGAGAAACCGTTGACAAA+TGG 0.495158 4:+88553122 MsG0480023683.01.T01:CDS
AGATTTAGATGGGTCAACTT+GGG 0.495805 4:-88554129 None:intergenic
AGAACTTGTCAAGCCCGGTA+TGG 0.498020 4:-88554350 None:intergenic
ATCTTTGAGAATAGAATCAA+TGG 0.499257 4:-88554220 None:intergenic
TTGAAAACTTCGAGGAGAGA+TGG 0.499508 4:-88553232 None:intergenic
TCTACAACACATTGAACTCT+GGG 0.501526 4:+88554062 MsG0480023683.01.T01:CDS
GACACCTTTGGTAGTGACAC+TGG 0.506567 4:-88553512 None:intergenic
GAACTTGTCAAGCCCGGTAT+GGG 0.508514 4:-88554349 None:intergenic
GATGAAGAGCGAAATCTCAT+TGG 0.512541 4:+88553069 MsG0480023683.01.T01:exon
CGGAGAAGAGCGTCGGCGAG+AGG 0.520250 4:-88553181 None:intergenic
GTGGAAGAGGTTGATTTGAG+AGG 0.522015 4:+88553262 MsG0480023683.01.T01:CDS
CTCCGTGGATGCAGAATGGA+TGG 0.526759 4:+88553291 MsG0480023683.01.T01:CDS
TGAAAACTTCGAGGAGAGAT+GGG 0.529159 4:-88553231 None:intergenic
GAAGAAGAACTTGTCAAGCC+CGG 0.529842 4:-88554355 None:intergenic
GGAGAGATGGGTGGAGGAGA+CGG 0.531642 4:-88553219 None:intergenic
AATGAATAGCCTTAAAGACT+TGG 0.533295 4:+88553402 MsG0480023683.01.T01:CDS
TGCCATCCATTCTGCATCCA+CGG 0.549889 4:-88553293 None:intergenic
AAAACTCCGTGGATGCAGAA+TGG 0.559557 4:+88553287 MsG0480023683.01.T01:CDS
GGAGGAGACGGCGAGTGATG+AGG 0.560281 4:-88553207 None:intergenic
AGATCAACATCCTTCAATGA+AGG 0.563988 4:-88554612 None:intergenic
TTGTAACCGCCATTTGTCAA+CGG 0.566491 4:-88553131 None:intergenic
TCTCTAAATTAGGAACAGAA+AGG 0.569265 4:-88553471 None:intergenic
GATTTAGATGGGTCAACTTG+GGG 0.570236 4:-88554128 None:intergenic
AGCTAAAGATGCATCATCGA+CGG 0.570525 4:-88553587 None:intergenic
CTTCGAGGAGAGATGGGTGG+AGG 0.577322 4:-88553225 None:intergenic
GCTAAAGATGCATCATCGAC+GGG 0.582086 4:-88553586 None:intergenic
AAATGGAAATGGAAAAGGAA+AGG 0.583404 4:-88552983 None:intergenic
AGTCCAATCAAGATTTAGAT+GGG 0.583656 4:-88554139 None:intergenic
AAGAGATAAGTGTTTAAGAG+AGG 0.589933 4:-88553545 None:intergenic
GGATGATGATTCAGTTGAGA+TGG 0.590659 4:+88554428 MsG0480023683.01.T01:CDS
TATTAAGAATAGCAGCACCT+TGG 0.591072 4:-88554101 None:intergenic
GAGAAAATAAGCTTTGTCAA+AGG 0.598172 4:-88554252 None:intergenic
GACGGCGAGTGATGAGGCGG+CGG 0.598638 4:-88553201 None:intergenic
AAAACCAGTGTCACTACCAA+AGG 0.603784 4:+88553508 MsG0480023683.01.T01:CDS
GGGCCAAGTCCAGAAAGGAC+AGG 0.606505 4:-88554329 None:intergenic
ACAAATGGCGGTTACAAAGA+CGG 0.609494 4:+88553137 MsG0480023683.01.T01:CDS
CATCATGCTGATATATAAGA+GGG 0.610974 4:-88554589 None:intergenic
GAGATGGTTGCATGTATTGG+TGG 0.612748 4:+88554444 MsG0480023683.01.T01:CDS
GGTATGGGCCAAGTCCAGAA+AGG 0.620167 4:-88554334 None:intergenic
TGGTGCAATTACTCATGTTG+AGG 0.626456 4:-88554200 None:intergenic
TTGAAAAGTTTGAATCTGAG+TGG 0.626815 4:+88554471 MsG0480023683.01.T01:CDS
GAGGCGGCGGAGAAGAGCGT+CGG 0.629007 4:-88553188 None:intergenic
TGATTCGATGACATTCAGCA+AGG 0.629424 4:-88553351 None:intergenic
GAGAAACCGTTGACAAATGG+CGG 0.645109 4:+88553125 MsG0480023683.01.T01:CDS
GGAGACGGCGAGTGATGAGG+CGG 0.646377 4:-88553204 None:intergenic
TTATCTCTTCTTGACTTGGG+CGG 0.649369 4:+88553559 MsG0480023683.01.T01:CDS
GACAGTAAAATATCAAACCA+AGG 0.657503 4:+88554084 MsG0480023683.01.T01:CDS
GAAATGGAAAAGGAAAGGAA+AGG 0.661033 4:-88552978 None:intergenic
AAACTTCGAGGAGAGATGGG+TGG 0.673094 4:-88553228 None:intergenic
AGTCTGACTTGAGTTTGATG+CGG 0.691945 4:-88552949 None:intergenic
TTTGAGAGGAGAAAACTCCG+TGG 0.736015 4:+88553276 MsG0480023683.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAATAAAATTTGATAT+TGG - Chr4:88553737-88553756 None:intergenic 10.0%
!!! GTAGTTTTTTTTTTTTTTTC+AGG + Chr4:88553910-88553929 MsG0480023683.01.T01:intron 15.0%
!! AAACAAAAATCAAATGGAAA+TGG - Chr4:88552997-88553016 None:intergenic 20.0%
!! ATATGTATTTGCATACAATA+AGG - Chr4:88554307-88554326 None:intergenic 20.0%
!! TGTGATTTATGAAATGAAAT+TGG - Chr4:88553039-88553058 None:intergenic 20.0%
! AAATCAAATGGAAATGGAAA+AGG - Chr4:88552991-88553010 None:intergenic 25.0%
! AAGAGGAAACAAAAATCAAA+TGG - Chr4:88553003-88553022 None:intergenic 25.0%
! AATTCCAGCATCATTAAATT+TGG - Chr4:88553443-88553462 None:intergenic 25.0%
! AGTGAAAGAATTTCAAGATT+GGG - Chr4:88554543-88554562 None:intergenic 25.0%
! TAGTGAAAGAATTTCAAGAT+TGG - Chr4:88554544-88554563 None:intergenic 25.0%
! TCGATCTCAATCAAAATAAA+CGG - Chr4:88553667-88553686 None:intergenic 25.0%
! TTGTAATCTGTTACTCAATT+GGG + Chr4:88553774-88553793 MsG0480023683.01.T01:intron 25.0%
!! ATCTTTGAGAATAGAATCAA+TGG - Chr4:88554223-88554242 None:intergenic 25.0%
!! ATTGATTCTATTCTCAAAGA+TGG + Chr4:88554222-88554241 MsG0480023683.01.T01:CDS 25.0%
!!! CTTCATTGTTTGTTTTAGTT+AGG + Chr4:88553877-88553896 MsG0480023683.01.T01:intron 25.0%
AAATGGAAATGGAAAAGGAA+AGG - Chr4:88552986-88553005 None:intergenic 30.0%
AAGAGATAAGTGTTTAAGAG+AGG - Chr4:88553548-88553567 None:intergenic 30.0%
ACACAATCACAGTTCAAAAA+CGG - Chr4:88553812-88553831 None:intergenic 30.0%
AGTAACAGATTACAACTAAC+TGG - Chr4:88553769-88553788 None:intergenic 30.0%
AGTCCAATCAAGATTTAGAT+GGG - Chr4:88554142-88554161 None:intergenic 30.0%
ATGAAGTCTAACAGTGAATT+CGG - Chr4:88553863-88553882 None:intergenic 30.0%
ATTAACAACACAGACTTGTA+TGG - Chr4:88553972-88553991 None:intergenic 30.0%
CAAGGTTCAAATAACGTAAA+TGG - Chr4:88553336-88553355 None:intergenic 30.0%
CATCATGCTGATATATAAGA+GGG - Chr4:88554592-88554611 None:intergenic 30.0%
CATTCAAGAGATGTTAAATC+AGG - Chr4:88554180-88554199 None:intergenic 30.0%
CTGAGCAATACAAACATTAA+AGG + Chr4:88554633-88554652 MsG0480023683.01.T01:CDS 30.0%
GACAGTAAAATATCAAACCA+AGG + Chr4:88554084-88554103 MsG0480023683.01.T01:CDS 30.0%
GTTGTAATCTGTTACTCAAT+TGG + Chr4:88553773-88553792 MsG0480023683.01.T01:intron 30.0%
TAGATAGATCCAAGTCTTTA+AGG - Chr4:88553414-88553433 None:intergenic 30.0%
TAGTCCAATCAAGATTTAGA+TGG - Chr4:88554143-88554162 None:intergenic 30.0%
TCTCTAAATTAGGAACAGAA+AGG - Chr4:88553474-88553493 None:intergenic 30.0%
TTGAAAAGTTTGAATCTGAG+TGG + Chr4:88554471-88554490 MsG0480023683.01.T01:CDS 30.0%
TTGGAATTTAGAAGAAGAAG+AGG - Chr4:88553020-88553039 None:intergenic 30.0%
! AATGAATAGCCTTAAAGACT+TGG + Chr4:88553402-88553421 MsG0480023683.01.T01:CDS 30.0%
! GAGAAAATAAGCTTTGTCAA+AGG - Chr4:88554255-88554274 None:intergenic 30.0%
!! TGACAAAGCTTATTTTCTCT+GGG + Chr4:88554256-88554275 MsG0480023683.01.T01:CDS 30.0%
!! TTGACAAAGCTTATTTTCTC+TGG + Chr4:88554255-88554274 MsG0480023683.01.T01:CDS 30.0%
!!! TCGTTGCAGGTATATTTTTT+GGG + Chr4:88553610-88553629 MsG0480023683.01.T01:intron 30.0%
!!! TTCGTTGCAGGTATATTTTT+TGG + Chr4:88553609-88553628 MsG0480023683.01.T01:intron 30.0%
AAGATTTAGATGGGTCAACT+TGG - Chr4:88554133-88554152 None:intergenic 35.0%
ACACTTATCTCTTCTTGACT+TGG + Chr4:88553555-88553574 MsG0480023683.01.T01:CDS 35.0%
AGATCAACATCCTTCAATGA+AGG - Chr4:88554615-88554634 None:intergenic 35.0%
AGATTTAGATGGGTCAACTT+GGG - Chr4:88554132-88554151 None:intergenic 35.0%
AGGCTATTCATTCCTGAAAT+AGG - Chr4:88553394-88553413 None:intergenic 35.0%
ATAAGGTTTCAGCTTCATTC+AGG - Chr4:88554290-88554309 None:intergenic 35.0%
ATCTACAACACATTGAACTC+TGG + Chr4:88554061-88554080 MsG0480023683.01.T01:CDS 35.0%
ATCTGTTACTCAATTGGGTT+TGG + Chr4:88553779-88553798 MsG0480023683.01.T01:intron 35.0%
ATGCGCAACTTCTCTAAATT+AGG - Chr4:88553484-88553503 None:intergenic 35.0%
CACTTATCTCTTCTTGACTT+GGG + Chr4:88553556-88553575 MsG0480023683.01.T01:CDS 35.0%
GAAATGGAAAAGGAAAGGAA+AGG - Chr4:88552981-88553000 None:intergenic 35.0%
GAATCAATTCATCTGCTCTT+TGG + Chr4:88553368-88553387 MsG0480023683.01.T01:CDS 35.0%
GCATCATGCTGATATATAAG+AGG - Chr4:88554593-88554612 None:intergenic 35.0%
TACATATTTCCTGTCCTTTC+TGG + Chr4:88554320-88554339 MsG0480023683.01.T01:CDS 35.0%
TATTAAGAATAGCAGCACCT+TGG - Chr4:88554104-88554123 None:intergenic 35.0%
TCTACAACACATTGAACTCT+GGG + Chr4:88554062-88554081 MsG0480023683.01.T01:CDS 35.0%
TGACCCATCTAAATCTTGAT+TGG + Chr4:88554136-88554155 MsG0480023683.01.T01:CDS 35.0%
TGCTCCAAATTTAATGATGC+TGG + Chr4:88553436-88553455 MsG0480023683.01.T01:CDS 35.0%
TTTGTGTTCTGCATTGTTCA+TGG + Chr4:88553639-88553658 MsG0480023683.01.T01:intron 35.0%
! ATGTAGTGGTCTTGAATTAC+TGG + Chr4:88553837-88553856 MsG0480023683.01.T01:intron 35.0%
! TGTGTATGTTGTTGGTTACT+TGG + Chr4:88553935-88553954 MsG0480023683.01.T01:intron 35.0%
!! TGATTGTGTTGCTTATGTAG+TGG + Chr4:88553823-88553842 MsG0480023683.01.T01:intron 35.0%
ACAAATGGCGGTTACAAAGA+CGG + Chr4:88553137-88553156 MsG0480023683.01.T01:CDS 40.0%
AGCTAAAGATGCATCATCGA+CGG - Chr4:88553590-88553609 None:intergenic 40.0%
CAATCTCAGCTCATGTATGA+TGG + Chr4:88554407-88554426 MsG0480023683.01.T01:CDS 40.0%
CACTGTGTTTGAAAACTTCG+AGG - Chr4:88553243-88553262 None:intergenic 40.0%
GATGAAGAGCGAAATCTCAT+TGG + Chr4:88553069-88553088 MsG0480023683.01.T01:exon 40.0%
GATTTAGATGGGTCAACTTG+GGG - Chr4:88554131-88554150 None:intergenic 40.0%
GCAGAATGGATGGCATATTT+AGG + Chr4:88553301-88553320 MsG0480023683.01.T01:CDS 40.0%
GGATGATGATTCAGTTGAGA+TGG + Chr4:88554428-88554447 MsG0480023683.01.T01:CDS 40.0%
GTTGAGATGGTTGCATGTAT+TGG + Chr4:88554441-88554460 MsG0480023683.01.T01:CDS 40.0%
GTTTGAATCTGAGTGGTACT+TGG + Chr4:88554478-88554497 MsG0480023683.01.T01:CDS 40.0%
TGAAAACTTCGAGGAGAGAT+GGG - Chr4:88553234-88553253 None:intergenic 40.0%
TGATTCGATGACATTCAGCA+AGG - Chr4:88553354-88553373 None:intergenic 40.0%
TGGTGCAATTACTCATGTTG+AGG - Chr4:88554203-88554222 None:intergenic 40.0%
TTACAACTAACTGGCAACAC+TGG - Chr4:88553760-88553779 None:intergenic 40.0%
TTGAAAACTTCGAGGAGAGA+TGG - Chr4:88553235-88553254 None:intergenic 40.0%
TTGTAACCGCCATTTGTCAA+CGG - Chr4:88553134-88553153 None:intergenic 40.0%
TTTCAAACACAGTGTGGAAG+AGG + Chr4:88553249-88553268 MsG0480023683.01.T01:CDS 40.0%
! AAAACCAGTGTCACTACCAA+AGG + Chr4:88553508-88553527 MsG0480023683.01.T01:CDS 40.0%
! AGTCTGACTTGAGTTTGATG+CGG - Chr4:88552952-88552971 None:intergenic 40.0%
! CGAAGTTTTCAAACACAGTG+TGG + Chr4:88553243-88553262 MsG0480023683.01.T01:CDS 40.0%
! TTCAGGAGTGTGTATGTTGT+TGG + Chr4:88553927-88553946 MsG0480023683.01.T01:intron 40.0%
!! TTATCTCTTCTTGACTTGGG+CGG + Chr4:88553559-88553578 MsG0480023683.01.T01:CDS 40.0%
!!! TTTGGTAGTGACACTGGTTT+TGG - Chr4:88553509-88553528 None:intergenic 40.0%
AAAACTCCGTGGATGCAGAA+TGG + Chr4:88553287-88553306 MsG0480023683.01.T01:CDS 45.0%
ACCTAGAACAAGTGTTTCGC+AGG - Chr4:88554033-88554052 None:intergenic 45.0%
CAGCATGATGCCTTCATTGA+AGG + Chr4:88554602-88554621 MsG0480023683.01.T01:CDS 45.0%
GAAGAAGAACTTGTCAAGCC+CGG - Chr4:88554358-88554377 None:intergenic 45.0%
GAGAAACCGTTGACAAATGG+CGG + Chr4:88553125-88553144 MsG0480023683.01.T01:CDS 45.0%
GAGATGGTTGCATGTATTGG+TGG + Chr4:88554444-88554463 MsG0480023683.01.T01:CDS 45.0%
GCAGAGAAACCGTTGACAAA+TGG + Chr4:88553122-88553141 MsG0480023683.01.T01:CDS 45.0%
GCTAAAGATGCATCATCGAC+GGG - Chr4:88553589-88553608 None:intergenic 45.0%
TCCTGCGAAACACTTGTTCT+AGG + Chr4:88554029-88554048 MsG0480023683.01.T01:intron 45.0%
TCTGCTCTTTGGCCTATTTC+AGG + Chr4:88553379-88553398 MsG0480023683.01.T01:CDS 45.0%
TTTCCTGTCCTTTCTGGACT+TGG + Chr4:88554326-88554345 MsG0480023683.01.T01:CDS 45.0%
TTTGAGAGGAGAAAACTCCG+TGG + Chr4:88553276-88553295 MsG0480023683.01.T01:CDS 45.0%
! TGCATCTTTAGCTTCGTTGC+AGG + Chr4:88553597-88553616 MsG0480023683.01.T01:CDS 45.0%
!! GCTGGATTAGGGATTTTAGC+TGG + Chr4:88554510-88554529 MsG0480023683.01.T01:CDS 45.0%
!! GGATTAGCTCTGCTGGATTA+GGG + Chr4:88554499-88554518 MsG0480023683.01.T01:CDS 45.0%
!! GTGGAAGAGGTTGATTTGAG+AGG + Chr4:88553262-88553281 MsG0480023683.01.T01:CDS 45.0%
!! TGGATTAGCTCTGCTGGATT+AGG + Chr4:88554498-88554517 MsG0480023683.01.T01:CDS 45.0%
AAACTTCGAGGAGAGATGGG+TGG - Chr4:88553231-88553250 None:intergenic 50.0%
AGAACTTGTCAAGCCCGGTA+TGG - Chr4:88554353-88554372 None:intergenic 50.0%
GAACTTGTCAAGCCCGGTAT+GGG - Chr4:88554352-88554371 None:intergenic 50.0%
GGCAAGAAGCTTGACACCTT+TGG - Chr4:88553527-88553546 None:intergenic 50.0%
TGCCATCCATTCTGCATCCA+CGG - Chr4:88553296-88553315 None:intergenic 50.0%
TTTCTGGACTTGGCCCATAC+CGG + Chr4:88554336-88554355 MsG0480023683.01.T01:CDS 50.0%
!! GACACCTTTGGTAGTGACAC+TGG - Chr4:88553515-88553534 None:intergenic 50.0%
!! GGTACTTGGATTAGCTCTGC+TGG + Chr4:88554492-88554511 MsG0480023683.01.T01:CDS 50.0%
CTCCGTGGATGCAGAATGGA+TGG + Chr4:88553291-88553310 MsG0480023683.01.T01:CDS 55.0%
GGTATGGGCCAAGTCCAGAA+AGG - Chr4:88554337-88554356 None:intergenic 55.0%
TTCTGGACTTGGCCCATACC+GGG + Chr4:88554337-88554356 MsG0480023683.01.T01:CDS 55.0%
CTTCGAGGAGAGATGGGTGG+AGG - Chr4:88553228-88553247 None:intergenic 60.0%
GGAGAGATGGGTGGAGGAGA+CGG - Chr4:88553222-88553241 None:intergenic 60.0%
GGGCCAAGTCCAGAAAGGAC+AGG - Chr4:88554332-88554351 None:intergenic 60.0%
GGAGACGGCGAGTGATGAGG+CGG - Chr4:88553207-88553226 None:intergenic 65.0%
GGAGGAGACGGCGAGTGATG+AGG - Chr4:88553210-88553229 None:intergenic 65.0%
!! AGAGCGTCGGCGAGAGGAGA+AGG - Chr4:88553178-88553197 None:intergenic 65.0%
GACGGCGAGTGATGAGGCGG+CGG - Chr4:88553204-88553223 None:intergenic 70.0%
! GAGGCGGCGGAGAAGAGCGT+CGG - Chr4:88553191-88553210 None:intergenic 70.0%
!! CGGAGAAGAGCGTCGGCGAG+AGG - Chr4:88553184-88553203 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 88552948 88554662 88552948 ID=MsG0480023683.01;Name=MsG0480023683.01
Chr4 mRNA 88552948 88554662 88552948 ID=MsG0480023683.01.T01;Parent=MsG0480023683.01;Name=MsG0480023683.01.T01;_AED=0.34;_eAED=0.34;_QI=122|1|0.5|1|1|1|2|0|386
Chr4 exon 88552948 88553618 88552948 ID=MsG0480023683.01.T01:exon:12398;Parent=MsG0480023683.01.T01
Chr4 exon 88554051 88554662 88554051 ID=MsG0480023683.01.T01:exon:12399;Parent=MsG0480023683.01.T01
Chr4 five_prime_UTR 88552948 88553069 88552948 ID=MsG0480023683.01.T01:five_prime_utr;Parent=MsG0480023683.01.T01
Chr4 CDS 88553070 88553618 88553070 ID=MsG0480023683.01.T01:cds;Parent=MsG0480023683.01.T01
Chr4 CDS 88554051 88554662 88554051 ID=MsG0480023683.01.T01:cds;Parent=MsG0480023683.01.T01
Gene Sequence

>MsG0480023683.01.T01

ATGAAGAGCGAAATCTCATTGGTTGAACTCTGCATAGACGCAGCTTGTAAAAGCAGAGAAACCGTTGACAAATGGCGGTTACAAAGACGGTCTCTCGATTGCTTACCTTCTCCTCTCGCCGACGCTCTTCTCCGCCGCCTCATCACTCGCCGTCTCCTCCACCCATCTCTCCTCGAAGTTTTCAAACACAGTGTGGAAGAGGTTGATTTGAGAGGAGAAAACTCCGTGGATGCAGAATGGATGGCATATTTAGGAGCATTTCGCCATTTACGTTATTTGAACCTTGCTGAATGTCATCGAATCAATTCATCTGCTCTTTGGCCTATTTCAGGAATGAATAGCCTTAAAGACTTGGATCTATCTAGATGCTCCAAATTTAATGATGCTGGAATTAATCATATCCTTTCTGTTCCTAATTTAGAGAAGTTGCGCATTTCCAAAACCAGTGTCACTACCAAAGGTGTCAAGCTTCTTGCCTCTCTTAAACACTTATCTCTTCTTGACTTGGGCGGTTTGCCCGTCGATGATGCATCTTTAGCTTCGTTGCAGGTACTGAAAAATCTACAACACATTGAACTCTGGGACAGTAAAATATCAAACCAAGGTGCTGCTATTCTTAATACGTTCCCCAAGTTGACCCATCTAAATCTTGATTGGACTAGCGTCACAAAATTGCCTGATTTAACATCTCTTGAATGCCTCAACATGAGTAATTGCACCATTGATTCTATTCTCAAAGATGGTAAAGCTCCTTTGACAAAGCTTATTTTCTCTGGGTCTACATTCCTGAATGAAGCTGAAACCTTATTGTATGCAAATACATATTTCCTGTCCTTTCTGGACTTGGCCCATACCGGGCTTGACAAGTTCTTCTTCTTAAGTAAGCTGAAAGTAATTGAACATCTCAATCTCAGCTCATGTATGATGGATGATGATTCAGTTGAGATGGTTGCATGTATTGGTGGAAAATTGAAAAGTTTGAATCTGAGTGGTACTTGGATTAGCTCTGCTGGATTAGGGATTTTAGCTGGACATGTTCCCAATCTTGAAATTCTTTCACTATCTCAGACATCAGTCGATGATACTGCCCTCTTATATATCAGCATGATGCCTTCATTGAAGGATGTTGATCTGAGCAATACAAACATTAAAGGTATTTGA
Protein sequence

>MsG0480023683.01.T01

MKSEISLVELCIDAACKSRETVDKWRLQRRSLDCLPSPLADALLRRLITRRLLHPSLLEVFKHSVEEVDLRGENSVDAEWMAYLGAFRHLRYLNLAECHRINSSALWPISGMNSLKDLDLSRCSKFNDAGINHILSVPNLEKLRISKTSVTTKGVKLLASLKHLSLLDLGGLPVDDASLASLQVLKNLQHIELWDSKISNQGAAILNTFPKLTHLNLDWTSVTKLPDLTSLECLNMSNCTIDSILKDGKAPLTKLIFSGSTFLNEAETLLYANTYFLSFLDLAHTGLDKFFFLSKLKVIEHLNLSSCMMDDDSVEMVACIGGKLKSLNLSGTWISSAGLGILAGHVPNLEILSLSQTSVDDTALLYISMMPSLKDVDLSNTNIKGI*