AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023727.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023727.01.T01 MTR_8g099985 87.833 600 47 4 1 595 1 579 0.0 1050
MsG0480023727.01.T01 MTR_8g099985 87.479 599 52 3 1 595 1 580 0.0 1048
MsG0480023727.01.T01 MTR_8g099985 90.035 572 35 3 25 595 2 552 0.0 1045
MsG0480023727.01.T01 MTR_8g099985 89.667 571 40 2 25 595 2 553 0.0 1043
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023727.01.T01 AT4G24040 54.592 588 240 7 15 595 59 626 0.0 616

Find 146 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAATCATAGCGCTTAAA+AGG 0.150099 4:-89053176 None:intergenic
GGGATTCCTACTGGGTAATT+AGG 0.188185 4:+89052044 MsG0480023727.01.T01:CDS
GTGGAACATTGCGGAGAATT+TGG 0.215201 4:+89055500 MsG0480023727.01.T01:CDS
CATACTCTGCTTCCTGTTCC+TGG 0.232512 4:+89051977 MsG0480023727.01.T01:CDS
CCTTGCATAATAGCGATTTA+AGG 0.232755 4:-89053451 None:intergenic
GCAACTTCTTTGAGTGATTC+AGG 0.233453 4:+89055163 MsG0480023727.01.T01:CDS
GCCTTCTTTGCAAATGTTAC+TGG 0.243160 4:+89054056 MsG0480023727.01.T01:CDS
CGATTAAGGTTCATTCTCTT+TGG 0.245075 4:+89051903 MsG0480023727.01.T01:CDS
CTGGCATTCTTGGAGGAGTT+TGG 0.263221 4:+89055793 MsG0480023727.01.T01:CDS
GGAAGCAGAGTATGGTAGTT+AGG 0.277116 4:-89051968 None:intergenic
TGCAGAATGTTTAGATGATA+TGG 0.287659 4:+89056046 MsG0480023727.01.T01:three_prime_UTR
TCGAGGATTTAGGAAGATTC+TGG 0.291598 4:-89051727 None:intergenic
CACACCATTGTGGACGATTC+TGG 0.297697 4:-89053489 None:intergenic
TGGCATTCTTGGAGGAGTTT+GGG 0.304022 4:+89055794 MsG0480023727.01.T01:CDS
ATTGGTTGTGATCCATCTTA+TGG 0.308508 4:-89055432 None:intergenic
ACTGAACCAGTCGAGGATTT+AGG 0.309319 4:-89051737 None:intergenic
TGGAGTTGTGCTGGCATTCT+TGG 0.309506 4:+89055783 MsG0480023727.01.T01:CDS
TTCTAACATCGGAAATTTGC+AGG 0.312438 4:-89054103 None:intergenic
ATTGCAATGCAGACTGGTTT+TGG 0.312604 4:+89055751 MsG0480023727.01.T01:intron
ATTGTGGACGATTCTGGCCT+TGG 0.323742 4:-89053483 None:intergenic
CATCCACAAAGGAACAAAAT+TGG 0.326919 4:-89054338 None:intergenic
CTTCCAGAAGGTTCAAGTTT+GGG 0.328084 4:+89054282 MsG0480023727.01.T01:intron
TACTGAAAGAGCACGAGTTT+TGG 0.328407 4:+89053253 MsG0480023727.01.T01:CDS
ACTTCCAGAAGGTTCAAGTT+TGG 0.328806 4:+89054281 MsG0480023727.01.T01:intron
TCATGAATACCTGAGTAAAA+TGG 0.329622 4:-89054364 None:intergenic
TCTGGCCTGCTTCGTGCTGC+TGG 0.332816 4:+89055136 MsG0480023727.01.T01:CDS
GGTCAGAGCATGGGCGATTA+AGG 0.337495 4:+89051889 MsG0480023727.01.T01:CDS
TGAACCAATGGCTTGATTCC+TGG 0.337512 4:+89054162 MsG0480023727.01.T01:CDS
GAATACGGGTTTGTGCTTAA+TGG 0.346920 4:+89052329 MsG0480023727.01.T01:CDS
AATGAAAGGTACAATAAGTT+TGG 0.347108 4:+89055857 MsG0480023727.01.T01:three_prime_UTR
GTTGAAGGCCTTGTAAAATC+AGG 0.348652 4:+89055374 MsG0480023727.01.T01:CDS
GTGATATAGAATTAGTTAAA+AGG 0.354626 4:+89053217 MsG0480023727.01.T01:CDS
CAAATGTTACTGGAGATAAT+AGG 0.358114 4:+89054066 MsG0480023727.01.T01:CDS
GATTTAAATGCATTTCTACT+TGG 0.364005 4:+89053930 MsG0480023727.01.T01:CDS
CTAGCATCAGCTGCTGAATC+AGG 0.368826 4:+89053645 MsG0480023727.01.T01:CDS
AGGCATCTGCTTCCAAGTTC+AGG 0.372013 4:+89053589 MsG0480023727.01.T01:CDS
ATCGCCCATGCTCTGACCTC+AGG 0.375305 4:-89051884 None:intergenic
CCTGGTTCTGTTGTTATCCC+TGG 0.380817 4:+89051995 MsG0480023727.01.T01:CDS
CAATCTCATTTCATTGATTG+AGG 0.383699 4:+89052307 MsG0480023727.01.T01:CDS
AGAAATGCATTTAAATCAAC+AGG 0.395594 4:-89053924 None:intergenic
ATTTCATTGATTGAGGAATA+CGG 0.395655 4:+89052314 MsG0480023727.01.T01:CDS
TCCAGTAACATTTGCAAAGA+AGG 0.405233 4:-89054057 None:intergenic
CAGGAACAGGAAGCAGAGTA+TGG 0.406552 4:-89051976 None:intergenic
GTAGACAATGTTGTGAAGTT+AGG 0.407549 4:-89053888 None:intergenic
TACAGTGACAGCATCAACTA+TGG 0.410643 4:+89051553 MsG0480023727.01.T01:CDS
ATTTAAATGCATTTCTACTT+GGG 0.415801 4:+89053931 MsG0480023727.01.T01:CDS
TATATTACTGGGATTCCTAC+TGG 0.417297 4:+89052035 MsG0480023727.01.T01:CDS
AGCGTGATCCGTATCGGAAA+GGG 0.420355 4:-89051702 None:intergenic
GATTTCGTGAAGTATATTAC+TGG 0.429451 4:+89052023 MsG0480023727.01.T01:CDS
GCAAATTTCCGATGTTAGAA+AGG 0.431097 4:+89054106 MsG0480023727.01.T01:CDS
CTAGAGCATACTACACTAAC+AGG 0.433578 4:+89052354 MsG0480023727.01.T01:CDS
CTCAATCAATGAAATGAGAT+TGG 0.439063 4:-89052306 None:intergenic
GAAGTGGAGCCCAACCATTC+GGG 0.440275 4:-89055340 None:intergenic
CTTCAACACATGTTAGTTGA+AGG 0.440568 4:+89055359 MsG0480023727.01.T01:CDS
TGAAGTGGAGCCCAACCATT+CGG 0.445190 4:-89055341 None:intergenic
ATAAATCATAGCGCTTAAAA+GGG 0.448110 4:-89053175 None:intergenic
TTCTGAAACAGTCCTGAACT+TGG 0.449107 4:-89053601 None:intergenic
GAAGCAGAGTATGGTAGTTA+GGG 0.453589 4:-89051967 None:intergenic
TATACATAAAGTGAACATTT+CGG 0.459139 4:+89053407 MsG0480023727.01.T01:CDS
GGCTCAGGGACAAAATCCTC+TGG 0.464693 4:-89051833 None:intergenic
ACTTCACGAAATCGCGAACC+AGG 0.465854 4:-89052013 None:intergenic
AAGGATACGAGTGGAGTTGA+AGG 0.466489 4:-89051590 None:intergenic
CTCGAAAGTCTCAAAACCTC+TGG 0.471532 4:+89055118 MsG0480023727.01.T01:CDS
CTGAAGAAATTGCCATAAGA+TGG 0.477213 4:+89055420 MsG0480023727.01.T01:CDS
GAGATAATGAAGAACTTGAT+TGG 0.477406 4:+89055990 MsG0480023727.01.T01:three_prime_UTR
TTTCATTGATTGAGGAATAC+GGG 0.491455 4:+89052315 MsG0480023727.01.T01:CDS
TAGGGACTTCCCGAATGGTT+GGG 0.494523 4:+89055331 MsG0480023727.01.T01:intron
ATAACAACAGAACCAGGAAC+AGG 0.502133 4:-89051989 None:intergenic
CTGGAAAGCGTGATCCGTAT+CGG 0.508838 4:-89051708 None:intergenic
CTGGTCAAATGGAGTTGTGC+TGG 0.514815 4:+89055774 MsG0480023727.01.T01:CDS
CATTCTTGGAGGAGTTTGGG+TGG 0.515798 4:+89055797 MsG0480023727.01.T01:CDS
TGCGGAGAATTTGGAGGTGG+GGG 0.515962 4:+89055509 MsG0480023727.01.T01:CDS
TTGAAGGCCTTGTAAAATCA+GGG 0.517177 4:+89055375 MsG0480023727.01.T01:CDS
TCGTGCTCTTTCAGTAGTGC+AGG 0.522605 4:-89053246 None:intergenic
CAGCAGCTGATGCTAGTTCA+CGG 0.526218 4:-89053638 None:intergenic
CAACTCCAGCAGCACGAAGC+AGG 0.532599 4:-89055141 None:intergenic
GACAATGTTGTGAAGTTAGG+AGG 0.536747 4:-89053885 None:intergenic
CACACCGCATTCAACACATT+CGG 0.536936 4:+89051629 MsG0480023727.01.T01:CDS
ATAGGGACTTCCCGAATGGT+TGG 0.537673 4:+89055330 MsG0480023727.01.T01:intron
AATTGCCTCCTTTCTAACAT+CGG 0.541772 4:-89054114 None:intergenic
TTTAAATGCATTTCTACTTG+GGG 0.544167 4:+89053932 MsG0480023727.01.T01:CDS
AGCAGCACGAAGCAGGCCAG+AGG 0.544937 4:-89055134 None:intergenic
TCAACTAACATGTGTTGAAG+TGG 0.545752 4:-89055356 None:intergenic
CATCAGCTGCTGAATCAGGA+TGG 0.547532 4:+89053649 MsG0480023727.01.T01:CDS
ATTTCGTGAAGTATATTACT+GGG 0.547731 4:+89052024 MsG0480023727.01.T01:CDS
CATTGCGGAGAATTTGGAGG+TGG 0.549996 4:+89055506 MsG0480023727.01.T01:CDS
AGGCCTTGTAAAATCAGGGT+TGG 0.550849 4:+89055379 MsG0480023727.01.T01:CDS
TAGCGCTTAAAAGGGGAGGC+TGG 0.552660 4:-89053167 None:intergenic
TAGAAAGGAGGCAATTAACT+CGG 0.554148 4:+89054121 MsG0480023727.01.T01:CDS
TCGCCCATGCTCTGACCTCA+GGG 0.556142 4:-89051883 None:intergenic
ACAATGTTGTGAAGTTAGGA+GGG 0.558386 4:-89053884 None:intergenic
AGTTGTGCTGGCATTCTTGG+AGG 0.560594 4:+89055786 MsG0480023727.01.T01:CDS
GTGTTGGAGAATTTCGAGAA+AGG 0.563419 4:-89051609 None:intergenic
CCAGGGATAACAACAGAACC+AGG 0.567138 4:-89051995 None:intergenic
GTGAACATTTCGGATGCTCA+AGG 0.569724 4:+89053417 MsG0480023727.01.T01:CDS
GAACATTGCGGAGAATTTGG+AGG 0.573813 4:+89055503 MsG0480023727.01.T01:CDS
GATGGGATTTCAGCACAAGA+TGG 0.574741 4:+89053667 MsG0480023727.01.T01:CDS
TGAGCCAGGAATCAAGCCAT+TGG 0.576256 4:-89054166 None:intergenic
ATGTGTGGTATTGCTGAGCC+AGG 0.578031 4:-89054180 None:intergenic
ATATTACTGGGATTCCTACT+GGG 0.578376 4:+89052036 MsG0480023727.01.T01:CDS
TGCAATAGGGACTTCCCGAA+TGG 0.582422 4:+89055326 MsG0480023727.01.T01:intron
ACGCTAAGCAGCAATGGCCA+AGG 0.586201 4:+89051493 None:intergenic
AAGCGTGATCCGTATCGGAA+AGG 0.588837 4:-89051703 None:intergenic
GCGTGATCCGTATCGGAAAG+GGG 0.591271 4:-89051701 None:intergenic
ATCAGCTGCTGAATCAGGAT+GGG 0.594438 4:+89053650 MsG0480023727.01.T01:CDS
AAACCCTGAGGTCAGAGCAT+GGG 0.598300 4:+89051880 MsG0480023727.01.T01:CDS
AATCTTCCTAAATCCTCGAC+TGG 0.599150 4:+89051731 MsG0480023727.01.T01:CDS
CCTTAAATCGCTATTATGCA+AGG 0.603776 4:+89053451 MsG0480023727.01.T01:CDS
AAAACCCTGAGGTCAGAGCA+TGG 0.605362 4:+89051879 MsG0480023727.01.T01:CDS
AACGGACACTGAACCAGTCG+AGG 0.607852 4:-89051744 None:intergenic
ATTGCGGAGAATTTGGAGGT+GGG 0.609969 4:+89055507 MsG0480023727.01.T01:CDS
TATGAGATATACGCTAGGAC+TGG 0.610537 4:+89053195 MsG0480023727.01.T01:CDS
GGAATGCAAACATGAACCAA+TGG 0.611077 4:+89054150 MsG0480023727.01.T01:CDS
GTTGGAAGAAGCAAGGTCGT+TGG 0.612218 4:+89055397 MsG0480023727.01.T01:CDS
AAAACGATTCAAATCATGAA+CGG 0.617469 4:-89051762 None:intergenic
ATCATAGCGCTTAAAAGGGG+AGG 0.618174 4:-89053171 None:intergenic
AATTTCCGATGTTAGAAAGG+AGG 0.620169 4:+89054109 MsG0480023727.01.T01:CDS
TTGCGGAGAATTTGGAGGTG+GGG 0.625168 4:+89055508 MsG0480023727.01.T01:CDS
ATGTGTTGAATGCGGTGTGT+TGG 0.625546 4:-89051625 None:intergenic
ATTTCAGCACAAGATGGATG+AGG 0.627854 4:+89053673 MsG0480023727.01.T01:CDS
TTTGAGAGGTAAATCGACGT+AGG 0.628012 4:-89051675 None:intergenic
ATGCAAGGTGGGACAAACCA+AGG 0.631432 4:+89053466 MsG0480023727.01.T01:CDS
TGATTTATGAGATATACGCT+AGG 0.633128 4:+89053190 MsG0480023727.01.T01:CDS
ATTTCGAGAAAGGATACGAG+TGG 0.636358 4:-89051599 None:intergenic
ACATACCACACACACCATTG+TGG 0.636727 4:-89053499 None:intergenic
AAATCGCTATTATGCAAGGT+GGG 0.639450 4:+89053455 MsG0480023727.01.T01:CDS
CTTCACGAAATCGCGAACCA+GGG 0.640218 4:-89052012 None:intergenic
TAAATCGCTATTATGCAAGG+TGG 0.642260 4:+89053454 MsG0480023727.01.T01:CDS
TAAATCATAGCGCTTAAAAG+GGG 0.643981 4:-89053174 None:intergenic
AAGTTTGACGTGGAACATTG+CGG 0.648225 4:+89055491 MsG0480023727.01.T01:CDS
TAAAATGGCTTCATCCACAA+AGG 0.649607 4:-89054349 None:intergenic
AACAAACCTAATTACCCAGT+AGG 0.651976 4:-89052050 None:intergenic
TGAGTGATTCAGGACAGCAG+TGG 0.659605 4:+89055173 MsG0480023727.01.T01:CDS
AGTTGATGCTGTCACTGTAA+CGG 0.661317 4:-89051549 None:intergenic
AATCAGGGTTGGAAGAAGCA+AGG 0.661754 4:+89055390 MsG0480023727.01.T01:CDS
ACTTGAAAATACCTCATGTG+TGG 0.670842 4:-89054195 None:intergenic
CGTGATCCGTATCGGAAAGG+GGG 0.673238 4:-89051700 None:intergenic
ATGATATGGAAAGTGCTGCA+TGG 0.685991 4:+89056060 MsG0480023727.01.T01:three_prime_UTR
TCTCGTGTACTCTGATCCAG+AGG 0.686829 4:+89051817 MsG0480023727.01.T01:CDS
AAGGCCAGAATCGTCCACAA+TGG 0.691379 4:+89053485 MsG0480023727.01.T01:CDS
GCTCAGCAATACCACACATG+AGG 0.698303 4:+89054184 MsG0480023727.01.T01:CDS
GAGCATACTACACTAACAGG+AGG 0.711397 4:+89052357 MsG0480023727.01.T01:CDS
AATGCATGAAAAGTTTGACG+TGG 0.715752 4:+89055481 MsG0480023727.01.T01:CDS
AGGGTGAGTCTTGACCTCAG+TGG 0.753249 4:-89051948 None:intergenic
ATTGCCGAATGTGTTGAATG+CGG 0.761724 4:-89051633 None:intergenic
GAGTAGGAAAGTATCCACTG+AGG 0.796738 4:+89051934 MsG0480023727.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAACATCGAATAT+TGG - Chr4:89056021-89056040 None:intergenic 15.0%
!! AAAACAAAACAAATTCAAAA+AGG - Chr4:89052828-89052847 None:intergenic 15.0%
!! AATATTTAATGTTCAACTTT+GGG + Chr4:89053546-89053565 MsG0480023727.01.T01:intron 15.0%
!! AGATATATTGAAAATATACT+AGG - Chr4:89055660-89055679 None:intergenic 15.0%
!! ATATTATTTCATTTATACCT+CGG - Chr4:89053531-89053550 None:intergenic 15.0%
!! TAATATTTAATGTTCAACTT+TGG + Chr4:89053545-89053564 MsG0480023727.01.T01:intron 15.0%
!!! GTCATTTATTGATTTATAAT+AGG + Chr4:89054838-89054857 MsG0480023727.01.T01:intron 15.0%
!!! TTTATAGAAACTTATTTTGA+TGG + Chr4:89051782-89051801 MsG0480023727.01.T01:CDS 15.0%
!!! TTTATTGATTTATAATAGGA+AGG + Chr4:89054842-89054861 MsG0480023727.01.T01:intron 15.0%
!!! TTTTTTGTAAACGATATAAT+TGG - Chr4:89055453-89055472 None:intergenic 15.0%
!! AAAAAAAATAAGTGCAGAAA+AGG - Chr4:89052934-89052953 None:intergenic 20.0%
!! AGTATTCAACTTTAAACATT+TGG + Chr4:89054609-89054628 MsG0480023727.01.T01:intron 20.0%
!! ATAGAATGCTAAATAATTTG+AGG + Chr4:89054632-89054651 MsG0480023727.01.T01:intron 20.0%
!! ATATTAAGCATATAGACTTA+AGG - Chr4:89054684-89054703 None:intergenic 20.0%
!! ATCAGTTAAAATTAAAATGC+TGG - Chr4:89052432-89052451 None:intergenic 20.0%
!! ATTTAAATGCATTTCTACTT+GGG + Chr4:89053931-89053950 MsG0480023727.01.T01:CDS 20.0%
!! ATTTAGATGACTCATATATA+AGG - Chr4:89053704-89053723 None:intergenic 20.0%
!! GATATGTTAAAAAGAATTTC+AGG + Chr4:89055032-89055051 MsG0480023727.01.T01:intron 20.0%
!! GTGATATAGAATTAGTTAAA+AGG + Chr4:89053217-89053236 MsG0480023727.01.T01:CDS 20.0%
!! TAAAATGTATGAAAAATCCT+TGG - Chr4:89051513-89051532 None:intergenic 20.0%
!! TATACATAAAGTGAACATTT+CGG + Chr4:89053407-89053426 MsG0480023727.01.T01:CDS 20.0%
!! TATATCGTTTACAAAAAAAC+AGG + Chr4:89055455-89055474 MsG0480023727.01.T01:CDS 20.0%
!! TCAGTTAAAATTAAAATGCT+GGG - Chr4:89052431-89052450 None:intergenic 20.0%
!!! AACTTTTTTCTACATATGTA+GGG + Chr4:89055237-89055256 MsG0480023727.01.T01:intron 20.0%
!!! ATAATTAGTTTGATTGCAAA+AGG - Chr4:89053069-89053088 None:intergenic 20.0%
!!! ATCATTTCTGTTTTTATCTT+TGG + Chr4:89052229-89052248 MsG0480023727.01.T01:intron 20.0%
!!! TACTTTATCATTGTGATTTT+TGG + Chr4:89055571-89055590 MsG0480023727.01.T01:intron 20.0%
!!! TTCTGTTATTTGAACAAATA+AGG + Chr4:89052095-89052114 MsG0480023727.01.T01:intron 20.0%
! AAAACGATTCAAATCATGAA+CGG - Chr4:89051765-89051784 None:intergenic 25.0%
! AAAGGTAAAACAATGAACAT+GGG - Chr4:89053373-89053392 None:intergenic 25.0%
! AAATTACAGAAAGTAATAGC+AGG - Chr4:89052386-89052405 None:intergenic 25.0%
! AAGATAAAGTCATTGTGTAA+AGG - Chr4:89055005-89055024 None:intergenic 25.0%
! AATAAACTCACAAGTGATAT+AGG - Chr4:89053306-89053325 None:intergenic 25.0%
! AATCAATAATAAGTCATGGA+TGG - Chr4:89054571-89054590 None:intergenic 25.0%
! AATTACAGAAAGTAATAGCA+GGG - Chr4:89052385-89052404 None:intergenic 25.0%
! ACAACCAATATTAGAAACTT+GGG - Chr4:89052203-89052222 None:intergenic 25.0%
! ACTTGTATAAATCTACCATA+TGG + Chr4:89054221-89054240 MsG0480023727.01.T01:intron 25.0%
! ACTTGTGAGTTTATTATCTA+AGG + Chr4:89053311-89053330 MsG0480023727.01.T01:intron 25.0%
! AGAAATGCATTTAAATCAAC+AGG - Chr4:89053927-89053946 None:intergenic 25.0%
! AGTTAAAATTAAAATGCTGG+GGG - Chr4:89052429-89052448 None:intergenic 25.0%
! ATAAATCATAGCGCTTAAAA+GGG - Chr4:89053178-89053197 None:intergenic 25.0%
! ATAGTTAACACAGTTCAAAT+AGG - Chr4:89052166-89052185 None:intergenic 25.0%
! ATGCATATCTATGGAAAATT+AGG + Chr4:89054506-89054525 MsG0480023727.01.T01:intron 25.0%
! ATGTAATCGATATATGTTTG+TGG - Chr4:89054969-89054988 None:intergenic 25.0%
! ATTTCGTGAAGTATATTACT+GGG + Chr4:89052024-89052043 MsG0480023727.01.T01:CDS 25.0%
! CAGTTAAAATTAAAATGCTG+GGG - Chr4:89052430-89052449 None:intergenic 25.0%
! CATCTAAATGTGTGTTTATT+AGG + Chr4:89053715-89053734 MsG0480023727.01.T01:intron 25.0%
! CTAATGTGCTAAAAAATGAA+AGG + Chr4:89055843-89055862 MsG0480023727.01.T01:exon 25.0%
! CTTGTATAAATCTACCATAT+GGG + Chr4:89054222-89054241 MsG0480023727.01.T01:intron 25.0%
! GATTTAAATGCATTTCTACT+TGG + Chr4:89053930-89053949 MsG0480023727.01.T01:CDS 25.0%
! GTTATATGATCTCAAATCAA+AGG - Chr4:89052675-89052694 None:intergenic 25.0%
! TAACTGTGTTAATAAACTTC+AGG - Chr4:89054474-89054493 None:intergenic 25.0%
! TACAACCAATATTAGAAACT+TGG - Chr4:89052204-89052223 None:intergenic 25.0%
! TATATCTATAAGACGATGAA+AGG - Chr4:89053391-89053410 None:intergenic 25.0%
! TCACAATCAATAATAAGTCA+TGG - Chr4:89054575-89054594 None:intergenic 25.0%
! TTGTATAAATCTACCATATG+GGG + Chr4:89054223-89054242 MsG0480023727.01.T01:intron 25.0%
! TTTAAATGCATTTCTACTTG+GGG + Chr4:89053932-89053951 MsG0480023727.01.T01:CDS 25.0%
!! AAATCAATTTTTCCACAAGT+GGG + Chr4:89055903-89055922 MsG0480023727.01.T01:three_prime_UTR 25.0%
!! AATGAAAGGTACAATAAGTT+TGG + Chr4:89055857-89055876 MsG0480023727.01.T01:three_prime_UTR 25.0%
!! ACGTGTATTCTTATTTCAAA+GGG + Chr4:89055683-89055702 MsG0480023727.01.T01:intron 25.0%
!! AGTAATAAGCAATTTGGAAT+TGG + Chr4:89055198-89055217 MsG0480023727.01.T01:intron 25.0%
!! ATTTCATTGATTGAGGAATA+CGG + Chr4:89052314-89052333 MsG0480023727.01.T01:CDS 25.0%
!! GTAATTTTATCCATTGTCAT+TGG + Chr4:89052399-89052418 MsG0480023727.01.T01:intron 25.0%
!! GTTCATGATTTTCTATTCAA+CGG + Chr4:89054788-89054807 MsG0480023727.01.T01:intron 25.0%
!! TAAATCAATTTTTCCACAAG+TGG + Chr4:89055902-89055921 MsG0480023727.01.T01:three_prime_UTR 25.0%
!! TACGTGTATTCTTATTTCAA+AGG + Chr4:89055682-89055701 MsG0480023727.01.T01:intron 25.0%
!! TATACATGTTTTCTAGATGT+TGG + Chr4:89054741-89054760 MsG0480023727.01.T01:intron 25.0%
!! TCAAAGGTGTAGATTATTTA+AGG - Chr4:89052659-89052678 None:intergenic 25.0%
!! TGTTTGAAAGTGCAAAAATT+AGG - Chr4:89053112-89053131 None:intergenic 25.0%
!!! AAGCAAATACATTTTGATTC+TGG - Chr4:89054318-89054337 None:intergenic 25.0%
!!! ACTATTTTGAGAGTTATTCA+CGG - Chr4:89052746-89052765 None:intergenic 25.0%
!!! GAACTTTTTTCTACATATGT+AGG + Chr4:89055236-89055255 MsG0480023727.01.T01:intron 25.0%
!!! GTTTTTATCTTTGGTTTTCA+GGG + Chr4:89052238-89052257 MsG0480023727.01.T01:intron 25.0%
!!! TGTTTTTATCTTTGGTTTTC+AGG + Chr4:89052237-89052256 MsG0480023727.01.T01:intron 25.0%
!!! TTTTTATCTTTGGTTTTCAG+GGG + Chr4:89052239-89052258 MsG0480023727.01.T01:intron 25.0%
AACTGATACTAGAGTTAATG+TGG - Chr4:89054398-89054417 None:intergenic 30.0%
ACAAATCGATCTCAAATGAA+TGG - Chr4:89052617-89052636 None:intergenic 30.0%
ACTCATATGAAACTTGCAAT+AGG + Chr4:89055312-89055331 MsG0480023727.01.T01:intron 30.0%
AGAATAAGATACTGCTAATG+TGG + Chr4:89052507-89052526 MsG0480023727.01.T01:intron 30.0%
CAAATGTTACTGGAGATAAT+AGG + Chr4:89054066-89054085 MsG0480023727.01.T01:CDS 30.0%
CAGAAACAAAAGAGTAAGAA+AGG - Chr4:89052080-89052099 None:intergenic 30.0%
CATAAATCATAGCGCTTAAA+AGG - Chr4:89053179-89053198 None:intergenic 30.0%
CTATGGAAAATTAGGAACTT+AGG + Chr4:89054514-89054533 MsG0480023727.01.T01:intron 30.0%
CTCAATCAATGAAATGAGAT+TGG - Chr4:89052309-89052328 None:intergenic 30.0%
CTCATATGAAACTTGCAATA+GGG + Chr4:89055313-89055332 MsG0480023727.01.T01:intron 30.0%
GAAAGGTAAAACAATGAACA+TGG - Chr4:89053374-89053393 None:intergenic 30.0%
GAGATAATGAAGAACTTGAT+TGG + Chr4:89055990-89056009 MsG0480023727.01.T01:three_prime_UTR 30.0%
GATCAAAGAATTTAATGAGC+AGG - Chr4:89054008-89054027 None:intergenic 30.0%
GATTTCGTGAAGTATATTAC+TGG + Chr4:89052023-89052042 MsG0480023727.01.T01:CDS 30.0%
GTGGTAAGTAATAAGCAATT+TGG + Chr4:89055192-89055211 MsG0480023727.01.T01:intron 30.0%
TAAATCATAGCGCTTAAAAG+GGG - Chr4:89053177-89053196 None:intergenic 30.0%
TATCAGTTAAATTGAGTGCA+TGG + Chr4:89054410-89054429 MsG0480023727.01.T01:intron 30.0%
TCATGAATACCTGAGTAAAA+TGG - Chr4:89054367-89054386 None:intergenic 30.0%
TGATTTATGAGATATACGCT+AGG + Chr4:89053190-89053209 MsG0480023727.01.T01:CDS 30.0%
TGCAGAATGTTTAGATGATA+TGG + Chr4:89056046-89056065 MsG0480023727.01.T01:three_prime_UTR 30.0%
TTTCTGTTAAATGCACATGA+AGG + Chr4:89054867-89054886 MsG0480023727.01.T01:intron 30.0%
! AATAAGCAATTTGGAATTGG+TGG + Chr4:89055201-89055220 MsG0480023727.01.T01:intron 30.0%
! ATTTGTTAACACAGAGAATC+TGG - Chr4:89052563-89052582 None:intergenic 30.0%
! CAATCTCATTTCATTGATTG+AGG + Chr4:89052307-89052326 MsG0480023727.01.T01:CDS 30.0%
! CATTCTATTTTACGATCTTC+GGG - Chr4:89055823-89055842 None:intergenic 30.0%
! GCATTCTATTTTACGATCTT+CGG - Chr4:89055824-89055843 None:intergenic 30.0%
! GTGAGTTTATTATCTAAGGT+TGG + Chr4:89053315-89053334 MsG0480023727.01.T01:intron 30.0%
! TTATTGATTGTGATCGTCTT+CGG + Chr4:89054582-89054601 MsG0480023727.01.T01:intron 30.0%
! TTTCATTGATTGAGGAATAC+GGG + Chr4:89052315-89052334 MsG0480023727.01.T01:CDS 30.0%
! TTTGAGTACCTTTTATAGCT+AGG + Chr4:89052864-89052883 MsG0480023727.01.T01:intron 30.0%
!! GGTTGCAGAATACTTATTTT+AGG - Chr4:89053987-89054006 None:intergenic 30.0%
!! TTGATCATCATTGATTCAGA+TGG + Chr4:89054022-89054041 MsG0480023727.01.T01:intron 30.0%
!!! TTTTATCTTTGGTTTTCAGG+GGG + Chr4:89052240-89052259 MsG0480023727.01.T01:intron 30.0%
AAATCGCTATTATGCAAGGT+GGG + Chr4:89053455-89053474 MsG0480023727.01.T01:CDS 35.0%
AACAAACCTAATTACCCAGT+AGG - Chr4:89052053-89052072 None:intergenic 35.0%
AATGCATGAAAAGTTTGACG+TGG + Chr4:89055481-89055500 MsG0480023727.01.T01:CDS 35.0%
AATTGCCTCCTTTCTAACAT+CGG - Chr4:89054117-89054136 None:intergenic 35.0%
AATTTCCGATGTTAGAAAGG+AGG + Chr4:89054109-89054128 MsG0480023727.01.T01:CDS 35.0%
ACAATGTTGTGAAGTTAGGA+GGG - Chr4:89053887-89053906 None:intergenic 35.0%
ACACCAATCCTAGCTATAAA+AGG - Chr4:89052875-89052894 None:intergenic 35.0%
ACTTGAAAATACCTCATGTG+TGG - Chr4:89054198-89054217 None:intergenic 35.0%
ATACACAAAAGTCACATCCT+AGG - Chr4:89055618-89055637 None:intergenic 35.0%
ATAGTCACAATGTCATACCT+GGG - Chr4:89055546-89055565 None:intergenic 35.0%
ATATTACTGGGATTCCTACT+GGG + Chr4:89052036-89052055 MsG0480023727.01.T01:CDS 35.0%
ATTGGTTGTGATCCATCTTA+TGG - Chr4:89055435-89055454 None:intergenic 35.0%
CAAGTGCCAAAATTAATCAC+AGG - Chr4:89052127-89052146 None:intergenic 35.0%
CATCCACAAAGGAACAAAAT+TGG - Chr4:89054341-89054360 None:intergenic 35.0%
CCTTAAATCGCTATTATGCA+AGG + Chr4:89053451-89053470 MsG0480023727.01.T01:CDS 35.0%
CCTTGCATAATAGCGATTTA+AGG - Chr4:89053454-89053473 None:intergenic 35.0%
CGATTAAGGTTCATTCTCTT+TGG + Chr4:89051903-89051922 MsG0480023727.01.T01:CDS 35.0%
CTGAAGAAATTGCCATAAGA+TGG + Chr4:89055420-89055439 MsG0480023727.01.T01:CDS 35.0%
CTTCAACACATGTTAGTTGA+AGG + Chr4:89055359-89055378 MsG0480023727.01.T01:CDS 35.0%
CTTGAATATACACACCTCTT+AGG + Chr4:89053344-89053363 MsG0480023727.01.T01:intron 35.0%
GATATGATCACGGTAAAACA+AGG - Chr4:89053032-89053051 None:intergenic 35.0%
GCAAATTTCCGATGTTAGAA+AGG + Chr4:89054106-89054125 MsG0480023727.01.T01:CDS 35.0%
GTAGACAATGTTGTGAAGTT+AGG - Chr4:89053891-89053910 None:intergenic 35.0%
GTGCAGTATAGATATGATCA+CGG - Chr4:89053042-89053061 None:intergenic 35.0%
TAAAATGGCTTCATCCACAA+AGG - Chr4:89054352-89054371 None:intergenic 35.0%
TAAATCGCTATTATGCAAGG+TGG + Chr4:89053454-89053473 MsG0480023727.01.T01:CDS 35.0%
TACAATCAGTCAGATTCATG+TGG - Chr4:89055732-89055751 None:intergenic 35.0%
TAGAAAGGAGGCAATTAACT+CGG + Chr4:89054121-89054140 MsG0480023727.01.T01:CDS 35.0%
TAGATATGCATGCACATTCA+AGG - Chr4:89054497-89054516 None:intergenic 35.0%
TATATTACTGGGATTCCTAC+TGG + Chr4:89052035-89052054 MsG0480023727.01.T01:CDS 35.0%
TCAACTAACATGTGTTGAAG+TGG - Chr4:89055359-89055378 None:intergenic 35.0%
TCCAGTAACATTTGCAAAGA+AGG - Chr4:89054060-89054079 None:intergenic 35.0%
TGAAAAAGACAGTTAGCAGA+AGG - Chr4:89054260-89054279 None:intergenic 35.0%
TGAATGTGCATGCATATCTA+TGG + Chr4:89054497-89054516 MsG0480023727.01.T01:intron 35.0%
TTCTAACATCGGAAATTTGC+AGG - Chr4:89054106-89054125 None:intergenic 35.0%
TTGAGAGTTATTCACGGATT+TGG - Chr4:89052740-89052759 None:intergenic 35.0%
! AATTTTTCTTCACCCACTTG+TGG - Chr4:89055918-89055937 None:intergenic 35.0%
! AGTGATATAGGCACACATTT+TGG - Chr4:89053294-89053313 None:intergenic 35.0%
! CAGTTAGACTAGTCATTTGA+TGG - Chr4:89052787-89052806 None:intergenic 35.0%
! CTCTTTGGAAAAACTTGAGT+AGG + Chr4:89051918-89051937 MsG0480023727.01.T01:CDS 35.0%
! CTTCCAATTTTGTTCCTTTG+TGG + Chr4:89054335-89054354 MsG0480023727.01.T01:CDS 35.0%
! GTACCTTTTATAGCTAGGAT+TGG + Chr4:89052869-89052888 MsG0480023727.01.T01:intron 35.0%
! TCCATGCCTGTGATTAATTT+TGG + Chr4:89052118-89052137 MsG0480023727.01.T01:intron 35.0%
! TGACTTTTGTGTATGATGAC+TGG + Chr4:89055624-89055643 MsG0480023727.01.T01:intron 35.0%
! TTAGGTCATCTTTTACTCCA+TGG - Chr4:89053969-89053988 None:intergenic 35.0%
! TTGAAGGCCTTGTAAAATCA+GGG + Chr4:89055375-89055394 MsG0480023727.01.T01:CDS 35.0%
!! GTCTTTTTCATACTTCCAGA+AGG + Chr4:89054270-89054289 MsG0480023727.01.T01:intron 35.0%
!!! ACCTCAGGGTTTTTTACTTT+AGG - Chr4:89051872-89051891 None:intergenic 35.0%
!!! ATACATTTTGATTCTGGTGC+AGG - Chr4:89054312-89054331 None:intergenic 35.0%
!!! ATCATTGTGATTTTTGGTCC+AGG + Chr4:89055577-89055596 MsG0480023727.01.T01:intron 35.0%
!!! GAAACTTATTTTGATGGTGC+AGG + Chr4:89051788-89051807 MsG0480023727.01.T01:CDS 35.0%
!!! TACATTTTGATTCTGGTGCA+GGG - Chr4:89054311-89054330 None:intergenic 35.0%
!!! TCATTGTGATTTTTGGTCCA+GGG + Chr4:89055578-89055597 MsG0480023727.01.T01:intron 35.0%
AATCTTCCTAAATCCTCGAC+TGG + Chr4:89051731-89051750 MsG0480023727.01.T01:CDS 40.0%
AATGTGGAATCAATGTGCTG+TGG + Chr4:89052523-89052542 MsG0480023727.01.T01:intron 40.0%
ACATATGTAGGGAGCAGAAA+AGG + Chr4:89055248-89055267 MsG0480023727.01.T01:intron 40.0%
ACCAATCAACAGCGTAATCT+AGG - Chr4:89054722-89054741 None:intergenic 40.0%
ACTTTAGGCAAAAAACCCTC+AGG - Chr4:89051857-89051876 None:intergenic 40.0%
AGGTTTCTCATATGTTTCCC+TGG - Chr4:89055598-89055617 None:intergenic 40.0%
ATAACAACAGAACCAGGAAC+AGG - Chr4:89051992-89052011 None:intergenic 40.0%
ATCAACAGCGTAATCTAGGA+CGG - Chr4:89054718-89054737 None:intergenic 40.0%
ATCAGTCAGATTCATGTGGA+AGG - Chr4:89055728-89055747 None:intergenic 40.0%
ATGTGCTGTGGTGTGAAATA+CGG + Chr4:89052535-89052554 MsG0480023727.01.T01:intron 40.0%
ATTGCCGAATGTGTTGAATG+CGG - Chr4:89051636-89051655 None:intergenic 40.0%
ATTTCAGCACAAGATGGATG+AGG + Chr4:89053673-89053692 MsG0480023727.01.T01:CDS 40.0%
ATTTCGAGAAAGGATACGAG+TGG - Chr4:89051602-89051621 None:intergenic 40.0%
CAGGTATGACATTGTGACTA+TGG + Chr4:89055545-89055564 MsG0480023727.01.T01:intron 40.0%
CATAGTCACAATGTCATACC+TGG - Chr4:89055547-89055566 None:intergenic 40.0%
CTAGAGCATACTACACTAAC+AGG + Chr4:89052354-89052373 MsG0480023727.01.T01:CDS 40.0%
GAAGCAGAGTATGGTAGTTA+GGG - Chr4:89051970-89051989 None:intergenic 40.0%
GAATACGGGTTTGTGCTTAA+TGG + Chr4:89052329-89052348 MsG0480023727.01.T01:CDS 40.0%
GACAATGTTGTGAAGTTAGG+AGG - Chr4:89053888-89053907 None:intergenic 40.0%
GATTCCACGCATTAAATGCA+TGG - Chr4:89052718-89052737 None:intergenic 40.0%
GATTGTATTGCAATGCAGAC+TGG + Chr4:89055745-89055764 MsG0480023727.01.T01:intron 40.0%
GCAACTTCTTTGAGTGATTC+AGG + Chr4:89055163-89055182 MsG0480023727.01.T01:CDS 40.0%
GCCAAAATTAATCACAGGCA+TGG - Chr4:89052122-89052141 None:intergenic 40.0%
GCCTAAAGTAAAAAACCCTG+AGG + Chr4:89051868-89051887 MsG0480023727.01.T01:CDS 40.0%
GCCTTCTTTGCAAATGTTAC+TGG + Chr4:89054056-89054075 MsG0480023727.01.T01:CDS 40.0%
GGAATGCAAACATGAACCAA+TGG + Chr4:89054150-89054169 MsG0480023727.01.T01:CDS 40.0%
GGGAAACATATGAGAAACCT+AGG + Chr4:89055598-89055617 MsG0480023727.01.T01:intron 40.0%
GTCGCCCAAGTTTCTAATAT+TGG + Chr4:89052196-89052215 MsG0480023727.01.T01:intron 40.0%
GTGTGGTATGTTAATAACCG+AGG + Chr4:89053511-89053530 MsG0480023727.01.T01:intron 40.0%
GTGTTGGAGAATTTCGAGAA+AGG - Chr4:89051612-89051631 None:intergenic 40.0%
TAATTCCATGCCATAGGACA+AGG + Chr4:89053569-89053588 MsG0480023727.01.T01:intron 40.0%
TACAGTGACAGCATCAACTA+TGG + Chr4:89051553-89051572 MsG0480023727.01.T01:CDS 40.0%
TAGTCACAATGTCATACCTG+GGG - Chr4:89055545-89055564 None:intergenic 40.0%
TATCCCAAACTTGAACCTTC+TGG - Chr4:89054288-89054307 None:intergenic 40.0%
TATGAGATATACGCTAGGAC+TGG + Chr4:89053195-89053214 MsG0480023727.01.T01:CDS 40.0%
TCCTAGATTACGCTGTTGAT+TGG + Chr4:89054718-89054737 MsG0480023727.01.T01:intron 40.0%
TCGAGGATTTAGGAAGATTC+TGG - Chr4:89051730-89051749 None:intergenic 40.0%
TTTGAGAGGTAAATCGACGT+AGG - Chr4:89051678-89051697 None:intergenic 40.0%
TTTGGGTAATTCCATGCCAT+AGG + Chr4:89053563-89053582 MsG0480023727.01.T01:intron 40.0%
! ACTTCCAGAAGGTTCAAGTT+TGG + Chr4:89054281-89054300 MsG0480023727.01.T01:intron 40.0%
! AGGCAATTAACTCGGTTTTC+TGG + Chr4:89054129-89054148 MsG0480023727.01.T01:CDS 40.0%
! AGTTGATGCTGTCACTGTAA+CGG - Chr4:89051552-89051571 None:intergenic 40.0%
! CGATATATGTTTGTGGACTG+CGG - Chr4:89054962-89054981 None:intergenic 40.0%
! CTTCCAACCCTGATTTTACA+AGG - Chr4:89055385-89055404 None:intergenic 40.0%
! CTTCCAGAAGGTTCAAGTTT+GGG + Chr4:89054282-89054301 MsG0480023727.01.T01:intron 40.0%
! CTTTTGTGTATGATGACTGG+AGG + Chr4:89055627-89055646 MsG0480023727.01.T01:intron 40.0%
! GGTAAATCGACGTAGGTTTT+AGG - Chr4:89051671-89051690 None:intergenic 40.0%
! GTTGAAGGCCTTGTAAAATC+AGG + Chr4:89055374-89055393 MsG0480023727.01.T01:CDS 40.0%
!! ATGATATGGAAAGTGCTGCA+TGG + Chr4:89056060-89056079 MsG0480023727.01.T01:three_prime_UTR 40.0%
!! TACTGAAAGAGCACGAGTTT+TGG + Chr4:89053253-89053272 MsG0480023727.01.T01:CDS 40.0%
!! TGGATGAAGCCATTTTACTC+AGG + Chr4:89054355-89054374 MsG0480023727.01.T01:CDS 40.0%
!! TTCTGAAACAGTCCTGAACT+TGG - Chr4:89053604-89053623 None:intergenic 40.0%
!!! ATTGCAATGCAGACTGGTTT+TGG + Chr4:89055751-89055770 MsG0480023727.01.T01:intron 40.0%
AAGGATACGAGTGGAGTTGA+AGG - Chr4:89051593-89051612 None:intergenic 45.0%
AATCAGGGTTGGAAGAAGCA+AGG + Chr4:89055390-89055409 MsG0480023727.01.T01:CDS 45.0%
ACATACCACACACACCATTG+TGG - Chr4:89053502-89053521 None:intergenic 45.0%
ACTGAACCAGTCGAGGATTT+AGG - Chr4:89051740-89051759 None:intergenic 45.0%
AGGTACTCAAATAAGTCGCG+TGG - Chr4:89052855-89052874 None:intergenic 45.0%
ATCAGCTGCTGAATCAGGAT+GGG + Chr4:89053650-89053669 MsG0480023727.01.T01:CDS 45.0%
ATCATAGCGCTTAAAAGGGG+AGG - Chr4:89053174-89053193 None:intergenic 45.0%
ATGAACATGGGCAACCTAAG+AGG - Chr4:89053361-89053380 None:intergenic 45.0%
ATGTGTTGAATGCGGTGTGT+TGG - Chr4:89051628-89051647 None:intergenic 45.0%
ATTGCGGAGAATTTGGAGGT+GGG + Chr4:89055507-89055526 MsG0480023727.01.T01:CDS 45.0%
CAAATTCCCCCTTTCCGATA+CGG + Chr4:89051694-89051713 MsG0480023727.01.T01:CDS 45.0%
CACACCGCATTCAACACATT+CGG + Chr4:89051629-89051648 MsG0480023727.01.T01:CDS 45.0%
CATGGCGTAGCAATTCATCT+TGG - Chr4:89052700-89052719 None:intergenic 45.0%
CTCGAAAGTCTCAAAACCTC+TGG + Chr4:89055118-89055137 MsG0480023727.01.T01:CDS 45.0%
GAGCATACTACACTAACAGG+AGG + Chr4:89052357-89052376 MsG0480023727.01.T01:CDS 45.0%
GATGGGATTTCAGCACAAGA+TGG + Chr4:89053667-89053686 MsG0480023727.01.T01:CDS 45.0%
GGAAGCAGAGTATGGTAGTT+AGG - Chr4:89051971-89051990 None:intergenic 45.0%
GGGATTCCTACTGGGTAATT+AGG + Chr4:89052044-89052063 MsG0480023727.01.T01:CDS 45.0%
GTGAACATTTCGGATGCTCA+AGG + Chr4:89053417-89053436 MsG0480023727.01.T01:CDS 45.0%
GTGCATTGCTTACACACACT+AGG - Chr4:89053744-89053763 None:intergenic 45.0%
TACGCCATGCATTTAATGCG+TGG + Chr4:89052711-89052730 MsG0480023727.01.T01:intron 45.0%
TGAACCAATGGCTTGATTCC+TGG + Chr4:89054162-89054181 MsG0480023727.01.T01:CDS 45.0%
TGGCATTCTTGGAGGAGTTT+GGG + Chr4:89055794-89055813 MsG0480023727.01.T01:CDS 45.0%
! AGGCCTTGTAAAATCAGGGT+TGG + Chr4:89055379-89055398 MsG0480023727.01.T01:CDS 45.0%
!! GAGTAGGAAAGTATCCACTG+AGG + Chr4:89051934-89051953 MsG0480023727.01.T01:CDS 45.0%
!!! ACTGGTTTTGGCTGGTCAAA+TGG + Chr4:89055763-89055782 MsG0480023727.01.T01:CDS 45.0%
!!! GAGCACGAGTTTTGGAATTC+AGG + Chr4:89053261-89053280 MsG0480023727.01.T01:CDS 45.0%
!!! TTTGGTTTTCAGGGGGTTGT+TGG + Chr4:89052247-89052266 MsG0480023727.01.T01:intron 45.0%
AAAACCCTGAGGTCAGAGCA+TGG + Chr4:89051879-89051898 MsG0480023727.01.T01:CDS 50.0%
AAACCCTGAGGTCAGAGCAT+GGG + Chr4:89051880-89051899 MsG0480023727.01.T01:CDS 50.0%
AAGCGTGATCCGTATCGGAA+AGG - Chr4:89051706-89051725 None:intergenic 50.0%
AAGGCCAGAATCGTCCACAA+TGG + Chr4:89053485-89053504 MsG0480023727.01.T01:CDS 50.0%
ACTTCACGAAATCGCGAACC+AGG - Chr4:89052016-89052035 None:intergenic 50.0%
AGATGCCTTGTCCTATGGCA+TGG - Chr4:89053577-89053596 None:intergenic 50.0%
AGCGTGATCCGTATCGGAAA+GGG - Chr4:89051705-89051724 None:intergenic 50.0%
AGGCATCTGCTTCCAAGTTC+AGG + Chr4:89053589-89053608 MsG0480023727.01.T01:CDS 50.0%
ATAGGGACTTCCCGAATGGT+TGG + Chr4:89055330-89055349 MsG0480023727.01.T01:intron 50.0%
ATCGTCCACAATGGTGTGTG+TGG + Chr4:89053494-89053513 MsG0480023727.01.T01:intron 50.0%
ATGCAAGGTGGGACAAACCA+AGG + Chr4:89053466-89053485 MsG0480023727.01.T01:CDS 50.0%
ATGTGTGGTATTGCTGAGCC+AGG - Chr4:89054183-89054202 None:intergenic 50.0%
ATTGTGGACGATTCTGGCCT+TGG - Chr4:89053486-89053505 None:intergenic 50.0%
CACACCATTGTGGACGATTC+TGG - Chr4:89053492-89053511 None:intergenic 50.0%
CAGCAGCTGATGCTAGTTCA+CGG - Chr4:89053641-89053660 None:intergenic 50.0%
CAGGAACAGGAAGCAGAGTA+TGG - Chr4:89051979-89051998 None:intergenic 50.0%
CATACTCTGCTTCCTGTTCC+TGG + Chr4:89051977-89051996 MsG0480023727.01.T01:CDS 50.0%
CATCAGCTGCTGAATCAGGA+TGG + Chr4:89053649-89053668 MsG0480023727.01.T01:CDS 50.0%
CATTCTTGGAGGAGTTTGGG+TGG + Chr4:89055797-89055816 MsG0480023727.01.T01:CDS 50.0%
CATTGCGGAGAATTTGGAGG+TGG + Chr4:89055506-89055525 MsG0480023727.01.T01:CDS 50.0%
CCAGGGATAACAACAGAACC+AGG - Chr4:89051998-89052017 None:intergenic 50.0%
CTAGCATCAGCTGCTGAATC+AGG + Chr4:89053645-89053664 MsG0480023727.01.T01:CDS 50.0%
CTGGCATTCTTGGAGGAGTT+TGG + Chr4:89055793-89055812 MsG0480023727.01.T01:CDS 50.0%
CTGGTCAAATGGAGTTGTGC+TGG + Chr4:89055774-89055793 MsG0480023727.01.T01:CDS 50.0%
CTTCACGAAATCGCGAACCA+GGG - Chr4:89052015-89052034 None:intergenic 50.0%
GAAGCAGATGCCTTGTCCTA+TGG - Chr4:89053582-89053601 None:intergenic 50.0%
GCAAAAAACCCTCAGGCTCA+GGG - Chr4:89051850-89051869 None:intergenic 50.0%
GCTCAGCAATACCACACATG+AGG + Chr4:89054184-89054203 MsG0480023727.01.T01:CDS 50.0%
GTTGGAAGAAGCAAGGTCGT+TGG + Chr4:89055397-89055416 MsG0480023727.01.T01:CDS 50.0%
TAGGGACTTCCCGAATGGTT+GGG + Chr4:89055331-89055350 MsG0480023727.01.T01:intron 50.0%
TCGGAAAGGGGGAATTTGAG+AGG - Chr4:89051692-89051711 None:intergenic 50.0%
TCGTGCTCTTTCAGTAGTGC+AGG - Chr4:89053249-89053268 None:intergenic 50.0%
TCTCGTGTACTCTGATCCAG+AGG + Chr4:89051817-89051836 MsG0480023727.01.T01:CDS 50.0%
TGAAGTGGAGCCCAACCATT+CGG - Chr4:89055344-89055363 None:intergenic 50.0%
TGAGCCAGGAATCAAGCCAT+TGG - Chr4:89054169-89054188 None:intergenic 50.0%
TGAGTGATTCAGGACAGCAG+TGG + Chr4:89055173-89055192 MsG0480023727.01.T01:CDS 50.0%
TGCAATAGGGACTTCCCGAA+TGG + Chr4:89055326-89055345 MsG0480023727.01.T01:intron 50.0%
TTGCGGAGAATTTGGAGGTG+GGG + Chr4:89055508-89055527 MsG0480023727.01.T01:CDS 50.0%
TTGGGGTAAGTTGCAGACCA+TGG + Chr4:89053949-89053968 MsG0480023727.01.T01:intron 50.0%
! AGTTGTGCTGGCATTCTTGG+AGG + Chr4:89055786-89055805 MsG0480023727.01.T01:CDS 50.0%
! CTGGAAAGCGTGATCCGTAT+CGG - Chr4:89051711-89051730 None:intergenic 50.0%
! GATTTTGTCCCTGAGCCTGA+GGG + Chr4:89051839-89051858 MsG0480023727.01.T01:CDS 50.0%
! TGGAGTTGTGCTGGCATTCT+TGG + Chr4:89055783-89055802 MsG0480023727.01.T01:CDS 50.0%
!! CCTGGTTCTGTTGTTATCCC+TGG + Chr4:89051995-89052014 MsG0480023727.01.T01:CDS 50.0%
!!! CAATGCAGACTGGTTTTGGC+TGG + Chr4:89055755-89055774 MsG0480023727.01.T01:intron 50.0%
AACGGACACTGAACCAGTCG+AGG - Chr4:89051747-89051766 None:intergenic 55.0%
AGGGTGAGTCTTGACCTCAG+TGG - Chr4:89051951-89051970 None:intergenic 55.0%
CGTGATCCGTATCGGAAAGG+GGG - Chr4:89051703-89051722 None:intergenic 55.0%
GAAGTGGAGCCCAACCATTC+GGG - Chr4:89055343-89055362 None:intergenic 55.0%
GCGTGATCCGTATCGGAAAG+GGG - Chr4:89051704-89051723 None:intergenic 55.0%
GGCAAAAAACCCTCAGGCTC+AGG - Chr4:89051851-89051870 None:intergenic 55.0%
GGCTAAGACAGCTCCCCATA+TGG - Chr4:89054239-89054258 None:intergenic 55.0%
GGCTCAGGGACAAAATCCTC+TGG - Chr4:89051836-89051855 None:intergenic 55.0%
GGTCAGAGCATGGGCGATTA+AGG + Chr4:89051889-89051908 MsG0480023727.01.T01:CDS 55.0%
TAGCGCTTAAAAGGGGAGGC+TGG - Chr4:89053170-89053189 None:intergenic 55.0%
TGCGGAGAATTTGGAGGTGG+GGG + Chr4:89055509-89055528 MsG0480023727.01.T01:CDS 55.0%
TGGGGGTGAATATGTACCCC+AGG + Chr4:89055526-89055545 MsG0480023727.01.T01:CDS 55.0%
! GGATTTTGTCCCTGAGCCTG+AGG + Chr4:89051838-89051857 MsG0480023727.01.T01:CDS 55.0%
! TGGGGGTGCACCAATGACAA+TGG - Chr4:89052412-89052431 None:intergenic 55.0%
! TGTGGACTGCGGTGCATGTT+TGG - Chr4:89054951-89054970 None:intergenic 55.0%
ATCGCCCATGCTCTGACCTC+AGG - Chr4:89051887-89051906 None:intergenic 60.0%
CAACTCCAGCAGCACGAAGC+AGG - Chr4:89055144-89055163 None:intergenic 60.0%
TCGCCCATGCTCTGACCTCA+GGG - Chr4:89051886-89051905 None:intergenic 60.0%
AGCAGCACGAAGCAGGCCAG+AGG - Chr4:89055137-89055156 None:intergenic 65.0%
TCTGGCCTGCTTCGTGCTGC+TGG + Chr4:89055136-89055155 MsG0480023727.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 89051506 89056121 89051506 ID=MsG0480023727.01;Name=MsG0480023727.01
Chr4 mRNA 89051506 89056121 89051506 ID=MsG0480023727.01.T01;Parent=MsG0480023727.01;Name=MsG0480023727.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0.8|0.63|1|0.8|0.72|11|275|595
Chr4 exon 89051506 89052065 89051506 ID=MsG0480023727.01.T01:exon:4942;Parent=MsG0480023727.01.T01
Chr4 exon 89052259 89052378 89052259 ID=MsG0480023727.01.T01:exon:4943;Parent=MsG0480023727.01.T01
Chr4 exon 89053167 89053282 89053167 ID=MsG0480023727.01.T01:exon:4944;Parent=MsG0480023727.01.T01
Chr4 exon 89053406 89053506 89053406 ID=MsG0480023727.01.T01:exon:4945;Parent=MsG0480023727.01.T01
Chr4 exon 89053585 89053694 89053585 ID=MsG0480023727.01.T01:exon:4946;Parent=MsG0480023727.01.T01
Chr4 exon 89053881 89053953 89053881 ID=MsG0480023727.01.T01:exon:4947;Parent=MsG0480023727.01.T01
Chr4 exon 89054041 89054224 89054041 ID=MsG0480023727.01.T01:exon:4948;Parent=MsG0480023727.01.T01
Chr4 exon 89054292 89054376 89054292 ID=MsG0480023727.01.T01:exon:4949;Parent=MsG0480023727.01.T01
Chr4 exon 89055054 89055194 89055054 ID=MsG0480023727.01.T01:exon:4950;Parent=MsG0480023727.01.T01
Chr4 exon 89055334 89055547 89055334 ID=MsG0480023727.01.T01:exon:4951;Parent=MsG0480023727.01.T01
Chr4 exon 89055763 89056121 89055763 ID=MsG0480023727.01.T01:exon:4952;Parent=MsG0480023727.01.T01
Chr4 CDS 89051506 89052065 89051506 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 CDS 89052259 89052378 89052259 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 CDS 89053167 89053282 89053167 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 CDS 89053406 89053506 89053406 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 CDS 89053585 89053694 89053585 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 CDS 89053881 89053953 89053881 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 CDS 89054041 89054224 89054041 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 CDS 89054292 89054376 89054292 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 CDS 89055054 89055194 89055054 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 CDS 89055334 89055547 89055334 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 CDS 89055763 89055846 89055763 ID=MsG0480023727.01.T01:cds;Parent=MsG0480023727.01.T01
Chr4 three_prime_UTR 89055847 89056121 89055847 ID=MsG0480023727.01.T01:three_prime_utr;Parent=MsG0480023727.01.T01
Gene Sequence

>MsG0480023727.01.T01

ATGGCCAAGGATTTTTCATACATTTTACTAACATTATTCTTCACCGTTACAGTGACAGCATCAACTATGGACGACGACGTGAAGCCTTCAACTCCACTCGTATCCTTTCTCGAAATTCTCCAACACACCGCATTCAACACATTCGGCAATCACAATTTCGATCCTAAAACCTACGTCGATTTACCTCTCAAATTCCCCCTTTCCGATACGGATCACGCTTTCCAGAATCTTCCTAAATCCTCGACTGGTTCAGTGTCCGTTCATGATTTGAATCGTTTTATAGAAACTTATTTTGATGGTGCAGGTGATGATCTCGTGTACTCTGATCCAGAGGATTTTGTCCCTGAGCCTGAGGGTTTTTTGCCTAAAGTAAAAAACCCTGAGGTCAGAGCATGGGCGATTAAGGTTCATTCTCTTTGGAAAAACTTGAGTAGGAAAGTATCCACTGAGGTCAAGACTCACCCTAACTACCATACTCTGCTTCCTGTTCCTGGTTCTGTTGTTATCCCTGGTTCGCGATTTCGTGAAGTATATTACTGGGATTCCTACTGGGTAATTAGGGGGTTGTTGGCGAGTAAAATGTATAAGACTGCTAAATCTATTGTCACCAATCTCATTTCATTGATTGAGGAATACGGGTTTGTGCTTAATGGTGCTAGAGCATACTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCTATGATTTATGAGATATACGCTAGGACTGGTGATATAGAATTAGTTAAAAGGTCTCTGCCTGCACTACTGAAAGAGCACGAGTTTTGGAATTCAGATATACATAAAGTGAACATTTCGGATGCTCAAGGTTGCACTCGCACCTTAAATCGCTATTATGCAAGGTGGGACAAACCAAGGCCAGAATCGTCCACAATGGACAAGGCATCTGCTTCCAAGTTCAGGACTGTTTCAGAAAAACAACATTTTTACCGTGAACTAGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACAAGATGGATGAGACACCCTCCTAACTTCACAACATTGTCTACAACATCAGTGATACCTGTTGATTTAAATGCATTTCTACTTGGGATGGAACTTAATATTGCCTTCTTTGCAAATGTTACTGGAGATAATAGGACTGCTGAACACTTCCTGCAAATTTCCGATGTTAGAAAGGAGGCAATTAACTCGGTTTTCTGGAATGCAAACATGAACCAATGGCTTGATTCCTGGCTCAGCAATACCACACATGAGGTATTTTCAAGTGCTACTTGTTCAAGTTTGGGATACCCTGCACCAGAATCAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAGCCATTTTACTCAGGTATTTTGTGTTGATGATTAATGTGTTTTATATTTATCAAGATGCTTTGCTAGTGAGTAATGTTCTCGAAAGTCTCAAAACCTCTGGCCTGCTTCGTGCTGCTGGAGTTGCAACTTCTTTGAGTGATTCAGGACAGCAGTGGGACTTCCCGAATGGTTGGGCTCCACTTCAACACATGTTAGTTGAAGGCCTTGTAAAATCAGGGTTGGAAGAAGCAAGGTCGTTGGCTGAAGAAATTGCCATAAGATGGATCACAACCAATTATATCGTTTACAAAAAAACAGGTGTAATGCATGAAAAGTTTGACGTGGAACATTGCGGAGAATTTGGAGGTGGGGGTGAATATGTACCCCAGACTGGTTTTGGCTGGTCAAATGGAGTTGTGCTGGCATTCTTGGAGGAGTTTGGGTGGCCCGAAGATCGTAAAATAGAATGCTAA
Protein sequence

>MsG0480023727.01.T01

MAKDFSYILLTLFFTVTVTASTMDDDVKPSTPLVSFLEILQHTAFNTFGNHNFDPKTYVDLPLKFPLSDTDHAFQNLPKSSTGSVSVHDLNRFIETYFDGAGDDLVYSDPEDFVPEPEGFLPKVKNPEVRAWAIKVHSLWKNLSRKVSTEVKTHPNYHTLLPVPGSVVIPGSRFREVYYWDSYWVIRGLLASKMYKTAKSIVTNLISLIEEYGFVLNGARAYYTNRSQPPLLSAMIYEIYARTGDIELVKRSLPALLKEHEFWNSDIHKVNISDAQGCTRTLNRYYARWDKPRPESSTMDKASASKFRTVSEKQHFYRELASAAESGWDFSTRWMRHPPNFTTLSTTSVIPVDLNAFLLGMELNIAFFANVTGDNRTAEHFLQISDVRKEAINSVFWNANMNQWLDSWLSNTTHEVFSSATCSSLGYPAPESKCICFQFCSFVDEAILLRYFVLMINVFYIYQDALLVSNVLESLKTSGLLRAAGVATSLSDSGQQWDFPNGWAPLQHMLVEGLVKSGLEEARSLAEEIAIRWITTNYIVYKKTGVMHEKFDVEHCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRKIEC*