AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023765.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023765.01.T01 MTR_8g101710 88.889 387 3 2 1 387 1 347 0.0 692
MsG0480023765.01.T01 MTR_8g101710 86.349 315 3 2 1 315 1 275 0.0 544
MsG0480023765.01.T01 MTR_1g016510 69.152 389 78 3 1 387 1 349 0.0 532
MsG0480023765.01.T01 MTR_1g081240 58.376 394 117 3 1 387 1 354 9.87e-164 463
MsG0480023765.01.T01 MTR_1g081240 55.556 324 97 3 71 387 1 284 1.16e-124 361
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023765.01.T01 AT5G56750 72.135 384 67 2 1 384 1 344 0.0 568
MsG0480023765.01.T01 AT5G56750 73.077 364 58 2 21 384 2 325 0.0 546
MsG0480023765.01.T01 AT2G19620 66.057 383 90 2 1 383 1 343 0.0 525
MsG0480023765.01.T01 AT5G11790 67.273 385 85 3 1 385 1 344 0.0 513
MsG0480023765.01.T01 AT2G19620 66.942 363 80 2 21 383 2 324 0.0 506
MsG0480023765.01.T01 AT2G19620 65.653 329 73 2 55 383 1 289 1.77e-158 447
MsG0480023765.01.T01 AT5G11790 67.372 331 67 3 55 385 1 290 6.44e-156 441

Find 120 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCGAAACACGCGTCTTTA+TGG 0.099306 4:-89556804 None:intergenic
ATTCATATTCATAATATTTA+TGG 0.105530 4:+89557135 MsG0480023765.01.T01:three_prime_UTR
CCTTATGCAAAGCACCTTCT+TGG 0.232192 4:+89555230 MsG0480023765.01.T01:CDS
AGCTTCAACCCCATGCTTTC+CGG 0.245987 4:-89556776 None:intergenic
TTTCCTTGCTCAACTTTATC+AGG 0.276417 4:+89555489 MsG0480023765.01.T01:CDS
TGATTCCGTTTCAGTTGATA+TGG 0.277119 4:+89553014 MsG0480023765.01.T01:CDS
TCTAATCCTTCTGTAATATC+AGG 0.279231 4:-89555854 None:intergenic
GATATGGAAAAGATCTTTCT+TGG 0.298817 4:+89553030 MsG0480023765.01.T01:CDS
TTTAGTGCGGTCTTGAATAA+AGG 0.300865 4:+89557065 MsG0480023765.01.T01:three_prime_UTR
AGCGAAACACGCGTCTTTAT+GGG 0.326221 4:-89556803 None:intergenic
ATGGGCTAAGTGGGCTCCTT+GGG 0.341176 4:-89556727 None:intergenic
TTACAATTTAGCGCTAAATC+TGG 0.346152 4:-89554206 None:intergenic
AAAAGAGGTATGGTAGAGTT+TGG 0.351107 4:+89556940 MsG0480023765.01.T01:three_prime_UTR
TGATGGGGTATGGGTTGTAT+AGG 0.367144 4:+89556684 MsG0480023765.01.T01:CDS
GATGGGCTAAGTGGGCTCCT+TGG 0.387609 4:-89556728 None:intergenic
CAACAAGAGTTCTTGCAGTT+AGG 0.388719 4:+89554826 MsG0480023765.01.T01:CDS
AAGAAGAGAGAGAAAATTGT+TGG 0.392374 4:+89552913 MsG0480023765.01.T01:five_prime_UTR
TATTTATCTGTAAATCCAAT+TGG 0.398532 4:+89557101 MsG0480023765.01.T01:three_prime_UTR
TTCTTTGAAGTTCTTCAGAA+AGG 0.400309 4:+89552952 MsG0480023765.01.T01:five_prime_UTR
CAGGAGCATCATATTCAAAC+TGG 0.411787 4:+89554122 MsG0480023765.01.T01:intron
ATTAAGGGGTCAATGATTGC+TGG 0.415224 4:-89557161 None:intergenic
TGTGTTGTTGTTTATGTGTC+AGG 0.418622 4:-89552875 None:intergenic
GCTTGGTGCTGTGATGTGTA+TGG 0.420350 4:+89555028 MsG0480023765.01.T01:CDS
TTCAACTTATGAAATAAAAG+AGG 0.421381 4:-89555466 None:intergenic
CCAAGAAGGTGCTTTGCATA+AGG 0.422664 4:-89555230 None:intergenic
TCCGTATCTGTCATAGTCTA+CGG 0.422806 4:+89554152 MsG0480023765.01.T01:CDS
GAGATATATATTAATAATGT+AGG 0.428351 4:+89557001 MsG0480023765.01.T01:three_prime_UTR
AAGCACCTTCTTGGACTGAA+TGG 0.428934 4:+89555239 MsG0480023765.01.T01:CDS
CATAAAGACGCGTGTTTCGC+TGG 0.429083 4:+89556805 MsG0480023765.01.T01:CDS
TCTTTGAAGTTCTTCAGAAA+GGG 0.429525 4:+89552953 MsG0480023765.01.T01:five_prime_UTR
CTTCTTTCTCCGGAAAGCAT+GGG 0.432890 4:+89556767 MsG0480023765.01.T01:CDS
CTCCCCGGAGCTTCTTTCTC+CGG 0.435564 4:+89556757 MsG0480023765.01.T01:CDS
GAATATAGCTAGAGTCCAAT+TGG 0.436757 4:-89557116 None:intergenic
AGCAGCAAAGAAGCAGCCTC+TGG 0.437665 4:-89554675 None:intergenic
TGAAGAACTTCAAAGAAAGA+AGG 0.444254 4:-89552946 None:intergenic
AAATATAGGAATCGCGTTGT+TGG 0.444613 4:+89555190 MsG0480023765.01.T01:CDS
TCAAATTTGTTACATTTCTA+CGG 0.444894 4:+89555358 MsG0480023765.01.T01:CDS
TGCCCCTTCCGCTGAAGACT+TGG 0.450271 4:+89554876 MsG0480023765.01.T01:CDS
TATTTACATAGTTTCTCCTC+TGG 0.455521 4:+89554798 MsG0480023765.01.T01:intron
TGTCATAGTCTACGGGGATC+AGG 0.457074 4:+89554160 MsG0480023765.01.T01:CDS
CAAGAAGGTGCTTTGCATAA+GGG 0.465836 4:-89555229 None:intergenic
GCTTCTTTCTCCGGAAAGCA+TGG 0.467061 4:+89556766 MsG0480023765.01.T01:CDS
GGATAGCCTCAGAATGGAAT+GGG 0.467778 4:-89555919 None:intergenic
CCGTATCTGTCATAGTCTAC+GGG 0.478296 4:+89554153 MsG0480023765.01.T01:CDS
GAAGAAGAGAGAAAGAAAAG+AGG 0.481042 4:+89552828 MsG0480023765.01.T01:five_prime_UTR
AAGATTTAGTGCCTTGGTTG+AGG 0.482830 4:+89555964 MsG0480023765.01.T01:CDS
AGAGGTATGGTAGAGTTTGG+AGG 0.485998 4:+89556943 MsG0480023765.01.T01:three_prime_UTR
AGAGAAAATTGTTGGGTGGG+TGG 0.487770 4:+89552921 MsG0480023765.01.T01:five_prime_UTR
GACTTACAAACCTCGTGTCC+AGG 0.494595 4:-89554729 None:intergenic
TGATAGAAGATTTAGTGCCT+TGG 0.501311 4:+89555958 MsG0480023765.01.T01:CDS
TGCCAAGTCTTCAGCGGAAG+GGG 0.501435 4:-89554878 None:intergenic
CTTTCCGGAGAAAGAAGCTC+CGG 0.501653 4:-89556761 None:intergenic
GAGGTATGGTAGAGTTTGGA+GGG 0.510380 4:+89556944 MsG0480023765.01.T01:three_prime_UTR
GAGAGAGAAAATTGTTGGGT+GGG 0.512997 4:+89552918 MsG0480023765.01.T01:five_prime_UTR
GCTTGAACTATCTCTGACTC+TGG 0.514137 4:-89555535 None:intergenic
CTTTGAAGTTCTTCAGAAAG+GGG 0.516116 4:+89552954 MsG0480023765.01.T01:five_prime_UTR
ATTAATAATGTAGGGAGGAG+AGG 0.517515 4:+89557010 MsG0480023765.01.T01:three_prime_UTR
TGTTTGCAGGTCCAGGCTTG+TGG 0.517552 4:+89556605 MsG0480023765.01.T01:intron
AAAGATCTTTCTTGGTGGAA+AGG 0.519204 4:+89553038 MsG0480023765.01.T01:CDS
GGGCTGTGACTGAACTTGCA+TGG 0.530749 4:-89556707 None:intergenic
ATGGAAAAGATCTTTCTTGG+TGG 0.538424 4:+89553033 MsG0480023765.01.T01:CDS
AGATGCAAGATGGGCTAAGT+GGG 0.538699 4:-89556736 None:intergenic
AGCTCCGGGGAGATGCAAGA+TGG 0.541313 4:-89556746 None:intergenic
CTTGGTGCTGTGATGTGTAT+GGG 0.542761 4:+89555029 MsG0480023765.01.T01:CDS
TCACCATTGATCCACAAGCC+TGG 0.543442 4:-89556616 None:intergenic
ATATATCATATCAGTCCTCC+TGG 0.544551 4:+89554711 MsG0480023765.01.T01:CDS
GCATGCGATGCTGATACCTA+TGG 0.544656 4:+89556652 MsG0480023765.01.T01:CDS
GGTCCAGGCTTGTGGATCAA+TGG 0.547337 4:+89556613 MsG0480023765.01.T01:intron
CAACTTTATCAGGAAGTTCG+CGG 0.549393 4:+89555499 MsG0480023765.01.T01:CDS
TGGATAGCCTCAGAATGGAA+TGG 0.551882 4:-89555920 None:intergenic
TTCTTTCTCCGGAAAGCATG+GGG 0.553544 4:+89556768 MsG0480023765.01.T01:CDS
TAGCCCATCTTGCATCTCCC+CGG 0.558551 4:+89556742 MsG0480023765.01.T01:CDS
CATCATATTCAAACTGGCTG+TGG 0.559367 4:+89554128 MsG0480023765.01.T01:CDS
GCAGATATGTCATGTTTCCA+AGG 0.559903 4:+89554639 MsG0480023765.01.T01:intron
AGATATATATTAATAATGTA+GGG 0.561752 4:+89557002 MsG0480023765.01.T01:three_prime_UTR
GCTCCGGGGAGATGCAAGAT+GGG 0.562541 4:-89556745 None:intergenic
GCAGCAAAGAAGCAGCCTCT+GGG 0.566376 4:-89554674 None:intergenic
AGAAGAGAGAGAAAATTGTT+GGG 0.568050 4:+89552914 MsG0480023765.01.T01:five_prime_UTR
TCTGGATAAGTGATCAGAGC+TGG 0.568548 4:-89554188 None:intergenic
GAGATGCAAGATGGGCTAAG+TGG 0.573247 4:-89556737 None:intergenic
TTTCCGGAGAAAGAAGCTCC+GGG 0.574094 4:-89556760 None:intergenic
CAGTTCCCCATTCCATTCTG+AGG 0.577238 4:+89555913 MsG0480023765.01.T01:CDS
GGAATCATTTGATTCTGCCA+TGG 0.577286 4:-89552998 None:intergenic
TCATGTGGATAGCCTCAGAA+TGG 0.577878 4:-89555925 None:intergenic
AGAGAGAGAAAATTGTTGGG+TGG 0.580911 4:+89552917 MsG0480023765.01.T01:five_prime_UTR
GAAAGAAAACAAATGTCTTG+CGG 0.581540 4:+89555720 MsG0480023765.01.T01:CDS
CTGCCAAGTCTTCAGCGGAA+GGG 0.583824 4:-89554879 None:intergenic
TAAAAGAGTGTTTACTTCAG+CGG 0.584282 4:+89555395 MsG0480023765.01.T01:CDS
GCAAGTTCAGTCACAGCCCA+AGG 0.585749 4:+89556711 MsG0480023765.01.T01:CDS
TTACATTTCTACGGCATGTG+TGG 0.586202 4:+89555367 MsG0480023765.01.T01:CDS
AGACTTGGCAGATCAAATAG+TGG 0.587192 4:+89554891 MsG0480023765.01.T01:CDS
AACTCTTGTTGAAGTTCCAG+AGG 0.590898 4:-89554814 None:intergenic
CCCGTAGACTATGACAGATA+CGG 0.591367 4:-89554153 None:intergenic
TCAACTTATGAAATAAAAGA+GGG 0.596860 4:-89555465 None:intergenic
TATCAAGTTTCGAAGTCATG+TGG 0.597724 4:-89555940 None:intergenic
TAAAACCATTCAGTCCAAGA+AGG 0.602523 4:-89555244 None:intergenic
TCTGCCAAGTCTTCAGCGGA+AGG 0.604002 4:-89554880 None:intergenic
AGGAGGCCTGATATTACAGA+AGG 0.604098 4:+89555848 MsG0480023765.01.T01:intron
CTTCCTGATAAAGTTGAGCA+AGG 0.608911 4:-89555492 None:intergenic
ATGTGTATGGGAGTAACGGC+TGG 0.609518 4:+89555041 MsG0480023765.01.T01:CDS
GGTATGGTAGAGTTTGGAGG+GGG 0.612771 4:+89556946 MsG0480023765.01.T01:three_prime_UTR
ACTTCAGCGGTACTTCAGCA+AGG 0.629263 4:+89555408 MsG0480023765.01.T01:CDS
TTGATCTGCCAAGTCTTCAG+CGG 0.631136 4:-89554884 None:intergenic
ATCATCAAGAGCGACATCCA+TGG 0.635085 4:+89552981 MsG0480023765.01.T01:exon
TGTGATGTGTATGGGAGTAA+CGG 0.638338 4:+89555037 MsG0480023765.01.T01:CDS
GATAGTTCAAGCTTGCCGAA+AGG 0.640690 4:+89555546 MsG0480023765.01.T01:CDS
TATATATTAATAATGTAGGG+AGG 0.643617 4:+89557005 MsG0480023765.01.T01:three_prime_UTR
TTGTGGATCAATGGTGACAG+AGG 0.643977 4:+89556622 MsG0480023765.01.T01:CDS
TATCAGTCCTCCTGGACACG+AGG 0.645279 4:+89554719 MsG0480023765.01.T01:CDS
CCCATCAGAAAATACTCCAT+AGG 0.649901 4:-89556668 None:intergenic
CGACAGAGCTACAATCCTCA+CGG 0.660629 4:-89555438 None:intergenic
AGGTATGGTAGAGTTTGGAG+GGG 0.662668 4:+89556945 MsG0480023765.01.T01:three_prime_UTR
CTTGGCAGATCAAATAGTGG+AGG 0.676605 4:+89554894 MsG0480023765.01.T01:CDS
CGTATCTGTCATAGTCTACG+GGG 0.684308 4:+89554154 MsG0480023765.01.T01:CDS
TTACAAACCTCGTGTCCAGG+AGG 0.698406 4:-89554726 None:intergenic
ATAGGTATCAGCATCGCATG+CGG 0.699214 4:-89556650 None:intergenic
CAGCAAGGTATTGTACCGTG+AGG 0.702573 4:+89555423 MsG0480023765.01.T01:CDS
GATAGCCTCAGAATGGAATG+GGG 0.713909 4:-89555918 None:intergenic
GGATATACATACCTCAACCA+AGG 0.717535 4:-89555975 None:intergenic
TTCCGGAGAAAGAAGCTCCG+GGG 0.722655 4:-89556759 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATGTAAATAATAATATT+CGG - Chr4:89554790-89554809 None:intergenic 10.0%
!! AGATATATATTAATAATGTA+GGG + Chr4:89557002-89557021 MsG0480023765.01.T01:three_prime_UTR 10.0%
!! ATTCATATTCATAATATTTA+TGG + Chr4:89557135-89557154 MsG0480023765.01.T01:three_prime_UTR 10.0%
!!! AAAGGTATATTTTTTTTAAT+GGG + Chr4:89553056-89553075 MsG0480023765.01.T01:intron 10.0%
!! GAGATATATATTAATAATGT+AGG + Chr4:89557001-89557020 MsG0480023765.01.T01:three_prime_UTR 15.0%
!! TGAAGAAAAAAATAAAAAAG+TGG - Chr4:89556883-89556902 None:intergenic 15.0%
!!! AATAATGGGTTTTTTTTTTT+TGG + Chr4:89553125-89553144 MsG0480023765.01.T01:intron 15.0%
!!! ATAATGGGTTTTTTTTTTTT+GGG + Chr4:89553126-89553145 MsG0480023765.01.T01:intron 15.0%
!!! ATATTTTTTTTAATGGGTTT+GGG + Chr4:89553062-89553081 MsG0480023765.01.T01:intron 15.0%
!!! CTTTTACTTTATGTTTATTT+GGG + Chr4:89553703-89553722 MsG0480023765.01.T01:intron 15.0%
!!! GAAAGGTATATTTTTTTTAA+TGG + Chr4:89553055-89553074 MsG0480023765.01.T01:intron 15.0%
!!! TATATTTTTTTTAATGGGTT+TGG + Chr4:89553061-89553080 MsG0480023765.01.T01:intron 15.0%
!!! TTGATTTACTGATTAAAATT+TGG - Chr4:89555791-89555810 None:intergenic 15.0%
!!! TTGTTATTTTGAAGAATAAT+GGG + Chr4:89553111-89553130 MsG0480023765.01.T01:intron 15.0%
!!! TTTGTTATTTTGAAGAATAA+TGG + Chr4:89553110-89553129 MsG0480023765.01.T01:intron 15.0%
!!! TTTTACTTTATGTTTATTTG+GGG + Chr4:89553704-89553723 MsG0480023765.01.T01:intron 15.0%
!!! TTTTTAAGTGATTAATGATT+TGG + Chr4:89553218-89553237 MsG0480023765.01.T01:intron 15.0%
!!! TTTTTCTTCTTTCAATAATT+AGG + Chr4:89553195-89553214 MsG0480023765.01.T01:intron 15.0%
!!! TTTTTTTTTTTTGGGTTTAA+AGG + Chr4:89553134-89553153 MsG0480023765.01.T01:intron 15.0%
!! ATAAGGTTAAAATTCCTAAA+TGG - Chr4:89553974-89553993 None:intergenic 20.0%
!! ATTCAAGAAAGAAAACAAAA+AGG - Chr4:89553476-89553495 None:intergenic 20.0%
!! CCAAATAAACATAAAGTAAA+AGG - Chr4:89553705-89553724 None:intergenic 20.0%
!! CCTAAAAAAATCTTATTAAG+GGG - Chr4:89557178-89557197 None:intergenic 20.0%
!! TACAAATTATTAATCGTTTC+AGG - Chr4:89555331-89555350 None:intergenic 20.0%
!! TATATATTAATAATGTAGGG+AGG + Chr4:89557005-89557024 MsG0480023765.01.T01:three_prime_UTR 20.0%
!! TATTTATCTGTAAATCCAAT+TGG + Chr4:89557101-89557120 MsG0480023765.01.T01:three_prime_UTR 20.0%
!! TCAACTTATGAAATAAAAGA+GGG - Chr4:89555468-89555487 None:intergenic 20.0%
!! TCATTGTATCAAATCATAAA+AGG - Chr4:89555303-89555322 None:intergenic 20.0%
!! TTCAACTTATGAAATAAAAG+AGG - Chr4:89555469-89555488 None:intergenic 20.0%
!!! ATCAATTGTTTAAAGTCAAT+GGG + Chr4:89553354-89553373 MsG0480023765.01.T01:intron 20.0%
!!! ATGTATGTAAATACTTTTGT+TGG + Chr4:89553729-89553748 MsG0480023765.01.T01:intron 20.0%
!!! ATTTTCTCATGTTATGAATT+TGG + Chr4:89553507-89553526 MsG0480023765.01.T01:intron 20.0%
!!! ATTTTGTATGTTTTTTGAAC+GGG + Chr4:89553160-89553179 MsG0480023765.01.T01:intron 20.0%
!!! CCCTTAATAAGATTTTTTTA+GGG + Chr4:89557176-89557195 MsG0480023765.01.T01:three_prime_UTR 20.0%
!!! CCTTAATAAGATTTTTTTAG+GGG + Chr4:89557177-89557196 MsG0480023765.01.T01:three_prime_UTR 20.0%
!!! CCTTTTACTTTATGTTTATT+TGG + Chr4:89553702-89553721 MsG0480023765.01.T01:intron 20.0%
!!! GATTATCTTATTTATGAATG+TGG + Chr4:89553327-89553346 MsG0480023765.01.T01:intron 20.0%
!!! GATTTTGTATGTTTTTTGAA+CGG + Chr4:89553159-89553178 MsG0480023765.01.T01:intron 20.0%
!!! TATCAATTGTTTAAAGTCAA+TGG + Chr4:89553353-89553372 MsG0480023765.01.T01:intron 20.0%
!!! TCAAATTTGTTACATTTCTA+CGG + Chr4:89555358-89555377 MsG0480023765.01.T01:CDS 20.0%
!!! TGAAACGATTAATAATTTGT+AGG + Chr4:89555330-89555349 MsG0480023765.01.T01:intron 20.0%
!!! TGTTTTTACAGATGAAATAT+AGG + Chr4:89555176-89555195 MsG0480023765.01.T01:intron 20.0%
!!! TTTTCTCATGTTATGAATTT+GGG + Chr4:89553508-89553527 MsG0480023765.01.T01:intron 20.0%
!!! TTTTGTTTTTCCAGAATAAT+GGG + Chr4:89553086-89553105 MsG0480023765.01.T01:intron 20.0%
!!! TTTTTGTTTTTCCAGAATAA+TGG + Chr4:89553085-89553104 MsG0480023765.01.T01:intron 20.0%
! AACTAACTATAGAAATCATG+CGG - Chr4:89556547-89556566 None:intergenic 25.0%
! AATAACAAAACCCATTATTC+TGG - Chr4:89553099-89553118 None:intergenic 25.0%
! AATCAGCTGTAAACAATTTA+TGG + Chr4:89554403-89554422 MsG0480023765.01.T01:intron 25.0%
! ACAAAAAGGATTACAGAAAA+AGG - Chr4:89553462-89553481 None:intergenic 25.0%
! ACGATGAACATATAATAACT+TGG + Chr4:89556576-89556595 MsG0480023765.01.T01:intron 25.0%
! ATAGAGAAAAAAAAGAGGTA+TGG + Chr4:89556930-89556949 MsG0480023765.01.T01:three_prime_UTR 25.0%
! ATGAATGTTTATCTTATAGC+AGG + Chr4:89556511-89556530 MsG0480023765.01.T01:intron 25.0%
! ATTTAGAGATAGAAAACTGT+GGG - Chr4:89556400-89556419 None:intergenic 25.0%
! CATATTTCCAGAGTAATTAA+AGG - Chr4:89554592-89554611 None:intergenic 25.0%
! CATTTAGAAAACAAATAGCT+TGG + Chr4:89553941-89553960 MsG0480023765.01.T01:intron 25.0%
! GTTCTATCATAAACCATATT+TGG - Chr4:89556251-89556270 None:intergenic 25.0%
! TATTAGAGAAACCATTAGAA+AGG + Chr4:89556202-89556221 MsG0480023765.01.T01:intron 25.0%
! TCTAAATCAATGATAGCAAT+TGG + Chr4:89556413-89556432 MsG0480023765.01.T01:intron 25.0%
! TGAATGTTTATCTTATAGCA+GGG + Chr4:89556512-89556531 MsG0480023765.01.T01:intron 25.0%
! TGAGTTAATATTTACTTGCA+TGG + Chr4:89554610-89554629 MsG0480023765.01.T01:intron 25.0%
! TGTCTTCAATTATTAGAATC+TGG + Chr4:89553830-89553849 MsG0480023765.01.T01:intron 25.0%
!! ACTCTTCTGAAAAATTAATG+AGG + Chr4:89553428-89553447 MsG0480023765.01.T01:intron 25.0%
!! ATATTTACTTGCATGGATTA+TGG + Chr4:89554617-89554636 MsG0480023765.01.T01:intron 25.0%
!! ATTTTCTCTCTCTTCTTTTA+TGG - Chr4:89552910-89552929 None:intergenic 25.0%
!! GCATTTGTGAATTTTACATT+TGG + Chr4:89553572-89553591 MsG0480023765.01.T01:intron 25.0%
!! TGCTATGTTGATTATGATTA+TGG + Chr4:89554088-89554107 MsG0480023765.01.T01:intron 25.0%
!! TTACTGATTAAAATTTGGTC+AGG - Chr4:89555786-89555805 None:intergenic 25.0%
!! TTTGTGAATTTTACATTTGG+TGG + Chr4:89553575-89553594 MsG0480023765.01.T01:intron 25.0%
!! TTTTCTCTCTCTTCTTTTAT+GGG - Chr4:89552909-89552928 None:intergenic 25.0%
!!! AACAAGAAACGTTTTTTACT+TGG + Chr4:89553397-89553416 MsG0480023765.01.T01:intron 25.0%
!!! ACTTTGATTCATTTTTAGTG+CGG + Chr4:89557052-89557071 MsG0480023765.01.T01:three_prime_UTR 25.0%
!!! ATATTCTTTGCTTTTGATGA+AGG + Chr4:89554021-89554040 MsG0480023765.01.T01:intron 25.0%
!!! ATTAAGCTATTTTTCCAAAC+AGG - Chr4:89554244-89554263 None:intergenic 25.0%
!!! CCCCTTAATAAGATTTTTTT+AGG + Chr4:89557175-89557194 MsG0480023765.01.T01:three_prime_UTR 25.0%
!!! GAATTTTAACCTTATCCAAA+TGG + Chr4:89553979-89553998 MsG0480023765.01.T01:intron 25.0%
!!! TTAAGCTATTTTTCCAAACA+GGG - Chr4:89554243-89554262 None:intergenic 25.0%
!!! TTTTGTATGTTTTTTGAACG+GGG + Chr4:89553161-89553180 MsG0480023765.01.T01:intron 25.0%
AACCATTAGAAAGGATTTAG+AGG + Chr4:89556211-89556230 MsG0480023765.01.T01:intron 30.0%
AAGAAGAGAGAGAAAATTGT+TGG + Chr4:89552913-89552932 MsG0480023765.01.T01:five_prime_UTR 30.0%
ACATGACTTCGAAATTTGAT+AGG + Chr4:89556000-89556019 MsG0480023765.01.T01:intron 30.0%
ACATTGTCCTTTAATTACTC+TGG + Chr4:89554582-89554601 MsG0480023765.01.T01:intron 30.0%
AGAAGAGAGAGAAAATTGTT+GGG + Chr4:89552914-89552933 MsG0480023765.01.T01:five_prime_UTR 30.0%
AGTTTGGTTGTCCAATAAAA+GGG + Chr4:89553910-89553929 MsG0480023765.01.T01:intron 30.0%
ATAATCAACATAGCATAAGC+AGG - Chr4:89554083-89554102 None:intergenic 30.0%
ATCAAATTTCGAAGTCATGT+GGG - Chr4:89556000-89556019 None:intergenic 30.0%
CAGAGATAGAGAAAAAAAAG+AGG + Chr4:89556925-89556944 MsG0480023765.01.T01:three_prime_UTR 30.0%
CATTATGAATGTAGTCCATT+TGG - Chr4:89553997-89554016 None:intergenic 30.0%
CTCATAGAAATTGTCAGATT+TGG + Chr4:89553606-89553625 MsG0480023765.01.T01:intron 30.0%
CTTGACGGAAAGAAAATATT+AGG + Chr4:89555105-89555124 MsG0480023765.01.T01:intron 30.0%
GAAAGAAAACAAATGTCTTG+CGG + Chr4:89555720-89555739 MsG0480023765.01.T01:CDS 30.0%
GAAATTGTCAGATTTGGATT+TGG + Chr4:89553612-89553631 MsG0480023765.01.T01:intron 30.0%
GATATGGAAAAGATCTTTCT+TGG + Chr4:89553030-89553049 MsG0480023765.01.T01:CDS 30.0%
GATTATGGATTTACCATTTC+AGG + Chr4:89554103-89554122 MsG0480023765.01.T01:intron 30.0%
GATTTAGAGATAGAAAACTG+TGG - Chr4:89556401-89556420 None:intergenic 30.0%
GATTTCTATAGTTAGTTGAC+CGG + Chr4:89556550-89556569 MsG0480023765.01.T01:intron 30.0%
GCAGAAATATGTGACAAATA+AGG - Chr4:89553554-89553573 None:intergenic 30.0%
TAAACTATCGTGAGACTATT+TGG - Chr4:89554459-89554478 None:intergenic 30.0%
TAATCAACATAGCATAAGCA+GGG - Chr4:89554082-89554101 None:intergenic 30.0%
TACATACTGCAAAAAGAGTA+AGG - Chr4:89555076-89555095 None:intergenic 30.0%
TAGTTTGGTTGTCCAATAAA+AGG + Chr4:89553909-89553928 MsG0480023765.01.T01:intron 30.0%
TATCAAATTTCGAAGTCATG+TGG - Chr4:89556001-89556020 None:intergenic 30.0%
TATTTACATAGTTTCTCCTC+TGG + Chr4:89554798-89554817 MsG0480023765.01.T01:intron 30.0%
TCTAATCCTTCTGTAATATC+AGG - Chr4:89555857-89555876 None:intergenic 30.0%
TGAAGAACTTCAAAGAAAGA+AGG - Chr4:89552949-89552968 None:intergenic 30.0%
TGGTTTATGATAGAACACTA+TGG + Chr4:89556255-89556274 MsG0480023765.01.T01:intron 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + Chr4:89556136-89556155 MsG0480023765.01.T01:intron 30.0%
TTACAATTTAGCGCTAAATC+TGG - Chr4:89554209-89554228 None:intergenic 30.0%
TTATCTTATAGCAGGGAATT+CGG + Chr4:89556519-89556538 MsG0480023765.01.T01:intron 30.0%
TTCTTTCCGTCAAGTTAAAA+GGG - Chr4:89555099-89555118 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - Chr4:89556135-89556154 None:intergenic 30.0%
TTTCTTTCCGTCAAGTTAAA+AGG - Chr4:89555100-89555119 None:intergenic 30.0%
! CAGTATCTTAGGCTTTTTAA+AGG - Chr4:89553786-89553805 None:intergenic 30.0%
! CTGATTTTATTAAGCTCTTC+AGG - Chr4:89554389-89554408 None:intergenic 30.0%
! CTTTTCCATATCAACTGAAA+CGG - Chr4:89553022-89553041 None:intergenic 30.0%
! GTGCTGCATTTTATGTTTTT+TGG + Chr4:89553305-89553324 MsG0480023765.01.T01:intron 30.0%
! GTTATGAATTTGGGATATAG+TGG + Chr4:89553517-89553536 MsG0480023765.01.T01:intron 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG - Chr4:89556194-89556213 None:intergenic 30.0%
!! CTTTTTGCTTTTGTTCTTTG+TGG + Chr4:89553636-89553655 MsG0480023765.01.T01:intron 30.0%
!! GTCAACTGATTTGAATGTAT+TGG + Chr4:89554749-89554768 MsG0480023765.01.T01:intron 30.0%
!! TAAAAGAGTGTTTACTTCAG+CGG + Chr4:89555395-89555414 MsG0480023765.01.T01:CDS 30.0%
!! TCTTTGAAGTTCTTCAGAAA+GGG + Chr4:89552953-89552972 MsG0480023765.01.T01:five_prime_UTR 30.0%
!! TTCTTTGAAGTTCTTCAGAA+AGG + Chr4:89552952-89552971 MsG0480023765.01.T01:five_prime_UTR 30.0%
!!! GACTGAATGGTTTTATAACA+AGG + Chr4:89555252-89555271 MsG0480023765.01.T01:CDS 30.0%
!!! TATGTACCCTTTTAACTTGA+CGG + Chr4:89555090-89555109 MsG0480023765.01.T01:intron 30.0%
!!! TTGTTGATTTGTTCCTTTTC+TGG + Chr4:89555151-89555170 MsG0480023765.01.T01:intron 30.0%
AAAGATCTTTCTTGGTGGAA+AGG + Chr4:89553038-89553057 MsG0480023765.01.T01:CDS 35.0%
AAATATAGGAATCGCGTTGT+TGG + Chr4:89555190-89555209 MsG0480023765.01.T01:CDS 35.0%
AAGAAGAGTAGATCAAATGG+AGG + Chr4:89556139-89556158 MsG0480023765.01.T01:intron 35.0%
AATCAACATAGCATAAGCAG+GGG - Chr4:89554081-89554100 None:intergenic 35.0%
AATGTGAGTACACCAAACAA+GGG - Chr4:89555651-89555670 None:intergenic 35.0%
ACAATCTGCAAGGATTTGAA+AGG - Chr4:89555280-89555299 None:intergenic 35.0%
AGACTATTTGGTAGAGCTTA+TGG - Chr4:89554447-89554466 None:intergenic 35.0%
AGCTTGGAAAAGTTCCATTT+AGG + Chr4:89553957-89553976 MsG0480023765.01.T01:intron 35.0%
ATATATCATATCAGTCCTCC+TGG + Chr4:89554711-89554730 MsG0480023765.01.T01:CDS 35.0%
ATGGAAAAGATCTTTCTTGG+TGG + Chr4:89553033-89553052 MsG0480023765.01.T01:CDS 35.0%
ATTAATAATGTAGGGAGGAG+AGG + Chr4:89557010-89557029 MsG0480023765.01.T01:three_prime_UTR 35.0%
ATTATATGTTCATCGTCGTC+CGG - Chr4:89556572-89556591 None:intergenic 35.0%
CTCACGATAGTTTATTTCAG+TGG + Chr4:89554465-89554484 MsG0480023765.01.T01:intron 35.0%
CTGTAAAAACATGCCAGAAA+AGG - Chr4:89555167-89555186 None:intergenic 35.0%
GAAGAAGAGAGAAAGAAAAG+AGG + Chr4:89552828-89552847 MsG0480023765.01.T01:five_prime_UTR 35.0%
GAATATAGCTAGAGTCCAAT+TGG - Chr4:89557119-89557138 None:intergenic 35.0%
GAATGTAGTCCATTTGGATA+AGG - Chr4:89553991-89554010 None:intergenic 35.0%
GACCTCTAAATCCTTTCTAA+TGG - Chr4:89556216-89556235 None:intergenic 35.0%
TAAAACCATTCAGTCCAAGA+AGG - Chr4:89555247-89555266 None:intergenic 35.0%
TACAAAGAGGACAGTATCTT+AGG - Chr4:89553797-89553816 None:intergenic 35.0%
TATCAAGTTTCGAAGTCATG+TGG - Chr4:89555943-89555962 None:intergenic 35.0%
TCAAATTTCGAAGTCATGTG+GGG - Chr4:89555999-89556018 None:intergenic 35.0%
TCATAAAAGGACAATCTGCA+AGG - Chr4:89555290-89555309 None:intergenic 35.0%
TGAATATGATGCTCCTGAAA+TGG - Chr4:89554119-89554138 None:intergenic 35.0%
TGATAGAAGATTTAGTGCCT+TGG + Chr4:89555958-89555977 MsG0480023765.01.T01:CDS 35.0%
TGGACAGGATATAATTCATG+CGG - Chr4:89555007-89555026 None:intergenic 35.0%
TGTGGTATCTGATGCAATTT+GGG + Chr4:89553654-89553673 MsG0480023765.01.T01:intron 35.0%
TTGTGGTATCTGATGCAATT+TGG + Chr4:89553653-89553672 MsG0480023765.01.T01:intron 35.0%
TTTAGTGCGGTCTTGAATAA+AGG + Chr4:89557065-89557084 MsG0480023765.01.T01:three_prime_UTR 35.0%
TTTCCTTGCTCAACTTTATC+AGG + Chr4:89555489-89555508 MsG0480023765.01.T01:CDS 35.0%
! AAAAGAGGTATGGTAGAGTT+TGG + Chr4:89556940-89556959 MsG0480023765.01.T01:three_prime_UTR 35.0%
! ACAAAAGCATGTCTATAACG+AGG + Chr4:89556353-89556372 MsG0480023765.01.T01:intron 35.0%
! AGTATTTTCTGATGGGGTAT+GGG + Chr4:89556675-89556694 MsG0480023765.01.T01:CDS 35.0%
! CAATGAGTTGGATCCAAATA+TGG + Chr4:89556235-89556254 MsG0480023765.01.T01:intron 35.0%
! TCAAGTGATAGAGTACTACA+GGG - Chr4:89555599-89555618 None:intergenic 35.0%
! TGATTCCGTTTCAGTTGATA+TGG + Chr4:89553014-89553033 MsG0480023765.01.T01:CDS 35.0%
! TGGAGGTTCTCAACTATTTT+AGG + Chr4:89554911-89554930 MsG0480023765.01.T01:CDS 35.0%
! TTATTGTCTTGCTAACTTGC+AGG + Chr4:89555828-89555847 MsG0480023765.01.T01:intron 35.0%
! TTCAAGTGATAGAGTACTAC+AGG - Chr4:89555600-89555619 None:intergenic 35.0%
!! AACTTGGTAATGTTGTTTGC+AGG + Chr4:89556592-89556611 MsG0480023765.01.T01:intron 35.0%
!! ACCTATGGAGTATTTTCTGA+TGG + Chr4:89556667-89556686 MsG0480023765.01.T01:CDS 35.0%
!! CCTATGGAGTATTTTCTGAT+GGG + Chr4:89556668-89556687 MsG0480023765.01.T01:CDS 35.0%
!! CTATGGAGTATTTTCTGATG+GGG + Chr4:89556669-89556688 MsG0480023765.01.T01:CDS 35.0%
!! CTTTGAAGTTCTTCAGAAAG+GGG + Chr4:89552954-89552973 MsG0480023765.01.T01:five_prime_UTR 35.0%
!! TGTGTTGTTGTTTATGTGTC+AGG - Chr4:89552878-89552897 None:intergenic 35.0%
AACTCTTGTTGAAGTTCCAG+AGG - Chr4:89554817-89554836 None:intergenic 40.0%
AAGATTTAGTGCCTTGGTTG+AGG + Chr4:89555964-89555983 MsG0480023765.01.T01:CDS 40.0%
AATTATATCCTGTCCAGGCT+TGG + Chr4:89555011-89555030 MsG0480023765.01.T01:intron 40.0%
AGACTTGGCAGATCAAATAG+TGG + Chr4:89554891-89554910 MsG0480023765.01.T01:CDS 40.0%
AGAGAGAGAAAATTGTTGGG+TGG + Chr4:89552917-89552936 MsG0480023765.01.T01:five_prime_UTR 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + Chr4:89556164-89556183 MsG0480023765.01.T01:intron 40.0%
AGTTGAAGACAGCTACAAAG+AGG - Chr4:89553810-89553829 None:intergenic 40.0%
ATTAAGGGGTCAATGATTGC+TGG - Chr4:89557164-89557183 None:intergenic 40.0%
CAACAAGAGTTCTTGCAGTT+AGG + Chr4:89554826-89554845 MsG0480023765.01.T01:CDS 40.0%
CAACTTTATCAGGAAGTTCG+CGG + Chr4:89555499-89555518 MsG0480023765.01.T01:CDS 40.0%
CAATGTGAGTACACCAAACA+AGG - Chr4:89555652-89555671 None:intergenic 40.0%
CATCATATTCAAACTGGCTG+TGG + Chr4:89554128-89554147 MsG0480023765.01.T01:CDS 40.0%
CCCATCAGAAAATACTCCAT+AGG - Chr4:89556671-89556690 None:intergenic 40.0%
CCCCAACAAAAATAAGCGTA+CGG - Chr4:89555892-89555911 None:intergenic 40.0%
CTAGCTTAGCACTAACCTTT+CGG - Chr4:89555564-89555583 None:intergenic 40.0%
CTGGGCAGAAAAATAATCCT+TGG - Chr4:89554659-89554678 None:intergenic 40.0%
CTTCCTGATAAAGTTGAGCA+AGG - Chr4:89555495-89555514 None:intergenic 40.0%
CTTCTTACAACGGCATCTAT+GGG - Chr4:89556125-89556144 None:intergenic 40.0%
GAGAGAGAAAATTGTTGGGT+GGG + Chr4:89552918-89552937 MsG0480023765.01.T01:five_prime_UTR 40.0%
GCAGATATGTCATGTTTCCA+AGG + Chr4:89554639-89554658 MsG0480023765.01.T01:intron 40.0%
GCATGAATTATATCCTGTCC+AGG + Chr4:89555006-89555025 MsG0480023765.01.T01:intron 40.0%
GGAATCATTTGATTCTGCCA+TGG - Chr4:89553001-89553020 None:intergenic 40.0%
GGATATACATACCTCAACCA+AGG - Chr4:89555978-89555997 None:intergenic 40.0%
GGATTTAGAGGTCAATGAGT+TGG + Chr4:89556223-89556242 MsG0480023765.01.T01:intron 40.0%
GTTGTCCAATAAAAGGGCAA+GGG + Chr4:89553916-89553935 MsG0480023765.01.T01:intron 40.0%
TCCGTATCTGTCATAGTCTA+CGG + Chr4:89554152-89554171 MsG0480023765.01.T01:CDS 40.0%
TCTTCTTACAACGGCATCTA+TGG - Chr4:89556126-89556145 None:intergenic 40.0%
TCTTTCATCCTTCCCTTGTT+TGG + Chr4:89555636-89555655 MsG0480023765.01.T01:intron 40.0%
TGATGCAATTTGGGTGATGT+AGG + Chr4:89553663-89553682 MsG0480023765.01.T01:intron 40.0%
TGTGATGTGTATGGGAGTAA+CGG + Chr4:89555037-89555056 MsG0480023765.01.T01:CDS 40.0%
TTACATTTCTACGGCATGTG+TGG + Chr4:89555367-89555386 MsG0480023765.01.T01:CDS 40.0%
! GAGTATTTTCTGATGGGGTA+TGG + Chr4:89556674-89556693 MsG0480023765.01.T01:CDS 40.0%
!! AGGATTATTTTTCTGCCCAG+AGG + Chr4:89554659-89554678 MsG0480023765.01.T01:CDS 40.0%
!! CAAGAAGGTGCTTTGCATAA+GGG - Chr4:89555232-89555251 None:intergenic 40.0%
!! CAGGAGCATCATATTCAAAC+TGG + Chr4:89554122-89554141 MsG0480023765.01.T01:intron 40.0%
!! TGTGCTTTTGCTTGCTAGTT+TGG + Chr4:89553894-89553913 MsG0480023765.01.T01:intron 40.0%
!!! CCGTACGCTTATTTTTGTTG+GGG + Chr4:89555889-89555908 MsG0480023765.01.T01:CDS 40.0%
!!! GCCGTACGCTTATTTTTGTT+GGG + Chr4:89555888-89555907 MsG0480023765.01.T01:CDS 40.0%
!!! TGCCGTACGCTTATTTTTGT+TGG + Chr4:89555887-89555906 MsG0480023765.01.T01:CDS 40.0%
!!! TGTGTTTCTTTTTCAGCTGC+TGG + Chr4:89555691-89555710 MsG0480023765.01.T01:intron 40.0%
AAAGAGGTAGAGGAAGACCT+AGG + Chr4:89556174-89556193 MsG0480023765.01.T01:intron 45.0%
AAGCACCTTCTTGGACTGAA+TGG + Chr4:89555239-89555258 MsG0480023765.01.T01:CDS 45.0%
AAGTGCATTACGACCCTGTT+TGG + Chr4:89554227-89554246 MsG0480023765.01.T01:intron 45.0%
AGAGAAAATTGTTGGGTGGG+TGG + Chr4:89552921-89552940 MsG0480023765.01.T01:five_prime_UTR 45.0%
AGATCAAATGGAGGAGAGTC+AGG + Chr4:89556148-89556167 MsG0480023765.01.T01:intron 45.0%
AGCGAAACACGCGTCTTTAT+GGG - Chr4:89556806-89556825 None:intergenic 45.0%
AGGAGGCCTGATATTACAGA+AGG + Chr4:89555848-89555867 MsG0480023765.01.T01:intron 45.0%
AGGTATGGTAGAGTTTGGAG+GGG + Chr4:89556945-89556964 MsG0480023765.01.T01:three_prime_UTR 45.0%
ATAGGTATCAGCATCGCATG+CGG - Chr4:89556653-89556672 None:intergenic 45.0%
ATCATCAAGAGCGACATCCA+TGG + Chr4:89552981-89553000 MsG0480023765.01.T01:exon 45.0%
CATGCTACATACCACAACCA+CGG - Chr4:89556036-89556055 None:intergenic 45.0%
CCCGTAGACTATGACAGATA+CGG - Chr4:89554156-89554175 None:intergenic 45.0%
CCGTATCTGTCATAGTCTAC+GGG + Chr4:89554153-89554172 MsG0480023765.01.T01:CDS 45.0%
CGTATCTGTCATAGTCTACG+GGG + Chr4:89554154-89554173 MsG0480023765.01.T01:CDS 45.0%
CTTGGCAGATCAAATAGTGG+AGG + Chr4:89554894-89554913 MsG0480023765.01.T01:CDS 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + Chr4:89556158-89556177 MsG0480023765.01.T01:intron 45.0%
GAGGTATGGTAGAGTTTGGA+GGG + Chr4:89556944-89556963 MsG0480023765.01.T01:three_prime_UTR 45.0%
GATAGCCTCAGAATGGAATG+GGG - Chr4:89555921-89555940 None:intergenic 45.0%
GATAGTTCAAGCTTGCCGAA+AGG + Chr4:89555546-89555565 MsG0480023765.01.T01:CDS 45.0%
GCTGTCCGATCTCAAATTAG+CGG + Chr4:89556467-89556486 MsG0480023765.01.T01:intron 45.0%
GCTTGAACTATCTCTGACTC+TGG - Chr4:89555538-89555557 None:intergenic 45.0%
GGATAGCCTCAGAATGGAAT+GGG - Chr4:89555922-89555941 None:intergenic 45.0%
GGTTGTCCAATAAAAGGGCA+AGG + Chr4:89553915-89553934 MsG0480023765.01.T01:intron 45.0%
TCATGTGGATAGCCTCAGAA+TGG - Chr4:89555928-89555947 None:intergenic 45.0%
TCTGGATAAGTGATCAGAGC+TGG - Chr4:89554191-89554210 None:intergenic 45.0%
TGAGTACACCAAACAAGGGA+AGG - Chr4:89555647-89555666 None:intergenic 45.0%
TGATAGGAGATTTAGTGCCG+TGG + Chr4:89556016-89556035 MsG0480023765.01.T01:intron 45.0%
TGGATAGCCTCAGAATGGAA+TGG - Chr4:89555923-89555942 None:intergenic 45.0%
TTGATCTGCCAAGTCTTCAG+CGG - Chr4:89554887-89554906 None:intergenic 45.0%
TTGTGGATCAATGGTGACAG+AGG + Chr4:89556622-89556641 MsG0480023765.01.T01:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - Chr4:89556304-89556323 None:intergenic 45.0%
! AGAGGTATGGTAGAGTTTGG+AGG + Chr4:89556943-89556962 MsG0480023765.01.T01:three_prime_UTR 45.0%
! ATGTGCCCTTGCCCTTTTAT+TGG - Chr4:89553924-89553943 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - Chr4:89556305-89556324 None:intergenic 45.0%
! CCTTATGCAAAGCACCTTCT+TGG + Chr4:89555230-89555249 MsG0480023765.01.T01:CDS 45.0%
! CTTCTTTCTCCGGAAAGCAT+GGG + Chr4:89556767-89556786 MsG0480023765.01.T01:CDS 45.0%
! GTAATGTTGTTTGCAGGTCC+AGG + Chr4:89556598-89556617 MsG0480023765.01.T01:intron 45.0%
! TGATGGGGTATGGGTTGTAT+AGG + Chr4:89556684-89556703 MsG0480023765.01.T01:CDS 45.0%
! TGGAGGGGGTGTAGATAAAA+GGG + Chr4:89556960-89556979 MsG0480023765.01.T01:three_prime_UTR 45.0%
! TTCTTTCTCCGGAAAGCATG+GGG + Chr4:89556768-89556787 MsG0480023765.01.T01:CDS 45.0%
! TTGGAGGGGGTGTAGATAAA+AGG + Chr4:89556959-89556978 MsG0480023765.01.T01:three_prime_UTR 45.0%
! TTGTCTTGCTAACTTGCAGG+AGG + Chr4:89555831-89555850 MsG0480023765.01.T01:intron 45.0%
!! AGATGCAAGATGGGCTAAGT+GGG - Chr4:89556739-89556758 None:intergenic 45.0%
!! CCAAGAAGGTGCTTTGCATA+AGG - Chr4:89555233-89555252 None:intergenic 45.0%
!! CTTGGTGCTGTGATGTGTAT+GGG + Chr4:89555029-89555048 MsG0480023765.01.T01:CDS 45.0%
ACTTCAGCGGTACTTCAGCA+AGG + Chr4:89555408-89555427 MsG0480023765.01.T01:CDS 50.0%
AGCTTCAACCCCATGCTTTC+CGG - Chr4:89556779-89556798 None:intergenic 50.0%
ATGTGTATGGGAGTAACGGC+TGG + Chr4:89555041-89555060 MsG0480023765.01.T01:CDS 50.0%
CAGTTCCCCATTCCATTCTG+AGG + Chr4:89555913-89555932 MsG0480023765.01.T01:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG + Chr4:89556303-89556322 MsG0480023765.01.T01:intron 50.0%
CGACAGAGCTACAATCCTCA+CGG - Chr4:89555441-89555460 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - Chr4:89556300-89556319 None:intergenic 50.0%
CTTTCCGGAGAAAGAAGCTC+CGG - Chr4:89556764-89556783 None:intergenic 50.0%
GACTTACAAACCTCGTGTCC+AGG - Chr4:89554732-89554751 None:intergenic 50.0%
GAGATTTAGTGCCGTGGTTG+TGG + Chr4:89556022-89556041 MsG0480023765.01.T01:intron 50.0%
GCATGCGATGCTGATACCTA+TGG + Chr4:89556652-89556671 MsG0480023765.01.T01:CDS 50.0%
GCTTCTTTCTCCGGAAAGCA+TGG + Chr4:89556766-89556785 MsG0480023765.01.T01:CDS 50.0%
GGTATGGTAGAGTTTGGAGG+GGG + Chr4:89556946-89556965 MsG0480023765.01.T01:three_prime_UTR 50.0%
GTCCGATCTCAAATTAGCGG+CGG + Chr4:89556470-89556489 MsG0480023765.01.T01:intron 50.0%
TCACCATTGATCCACAAGCC+TGG - Chr4:89556619-89556638 None:intergenic 50.0%
TGTCATAGTCTACGGGGATC+AGG + Chr4:89554160-89554179 MsG0480023765.01.T01:CDS 50.0%
TTACAAACCTCGTGTCCAGG+AGG - Chr4:89554729-89554748 None:intergenic 50.0%
TTTCCGGAGAAAGAAGCTCC+GGG - Chr4:89556763-89556782 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - Chr4:89556306-89556325 None:intergenic 50.0%
! CTCCGCCGCTAATTTGAGAT+CGG - Chr4:89556475-89556494 None:intergenic 50.0%
!! CAGCAAGGTATTGTACCGTG+AGG + Chr4:89555423-89555442 MsG0480023765.01.T01:CDS 50.0%
!! GAGATGCAAGATGGGCTAAG+TGG - Chr4:89556740-89556759 None:intergenic 50.0%
!! GCTTGGTGCTGTGATGTGTA+TGG + Chr4:89555028-89555047 MsG0480023765.01.T01:CDS 50.0%
ACACATCACAGCACCAAGCC+TGG - Chr4:89555027-89555046 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - Chr4:89556292-89556311 None:intergenic 55.0%
AGCAGCAAAGAAGCAGCCTC+TGG - Chr4:89554678-89554697 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + Chr4:89556291-89556310 MsG0480023765.01.T01:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + Chr4:89556298-89556317 MsG0480023765.01.T01:intron 55.0%
CTGCCAAGTCTTCAGCGGAA+GGG - Chr4:89554882-89554901 None:intergenic 55.0%
GCAAGTTCAGTCACAGCCCA+AGG + Chr4:89556711-89556730 MsG0480023765.01.T01:CDS 55.0%
GCAGCAAAGAAGCAGCCTCT+GGG - Chr4:89554677-89554696 None:intergenic 55.0%
GGGCTGTGACTGAACTTGCA+TGG - Chr4:89556710-89556729 None:intergenic 55.0%
GGTCCAGGCTTGTGGATCAA+TGG + Chr4:89556613-89556632 MsG0480023765.01.T01:intron 55.0%
TAGCCCATCTTGCATCTCCC+CGG + Chr4:89556742-89556761 MsG0480023765.01.T01:CDS 55.0%
TATCAGTCCTCCTGGACACG+AGG + Chr4:89554719-89554738 MsG0480023765.01.T01:CDS 55.0%
TCTGCCAAGTCTTCAGCGGA+AGG - Chr4:89554883-89554902 None:intergenic 55.0%
TGCCAAGTCTTCAGCGGAAG+GGG - Chr4:89554881-89554900 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + Chr4:89556292-89556311 MsG0480023765.01.T01:intron 55.0%
TGTTTGCAGGTCCAGGCTTG+TGG + Chr4:89556605-89556624 MsG0480023765.01.T01:intron 55.0%
TTCCGGAGAAAGAAGCTCCG+GGG - Chr4:89556762-89556781 None:intergenic 55.0%
! ATGGGCTAAGTGGGCTCCTT+GGG - Chr4:89556730-89556749 None:intergenic 55.0%
AGCTCCGGGGAGATGCAAGA+TGG - Chr4:89556749-89556768 None:intergenic 60.0%
CTCCCCGGAGCTTCTTTCTC+CGG + Chr4:89556757-89556776 MsG0480023765.01.T01:CDS 60.0%
GCTCCGGGGAGATGCAAGAT+GGG - Chr4:89556748-89556767 None:intergenic 60.0%
TCACAGCACCAAGCCTGGAC+AGG - Chr4:89555022-89555041 None:intergenic 60.0%
TGCCCCTTCCGCTGAAGACT+TGG + Chr4:89554876-89554895 MsG0480023765.01.T01:CDS 60.0%
!! GATGGGCTAAGTGGGCTCCT+TGG - Chr4:89556731-89556750 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 89552826 89557197 89552826 ID=MsG0480023765.01;Name=MsG0480023765.01
Chr4 mRNA 89552826 89557197 89552826 ID=MsG0480023765.01.T01;Parent=MsG0480023765.01;Name=MsG0480023765.01.T01;_AED=0.31;_eAED=0.31;_QI=174|0.88|0.7|1|0.77|0.8|10|362|387
Chr4 exon 89552826 89553059 89552826 ID=MsG0480023765.01.T01:exon:7798;Parent=MsG0480023765.01.T01
Chr4 exon 89554125 89554224 89554125 ID=MsG0480023765.01.T01:exon:7799;Parent=MsG0480023765.01.T01
Chr4 exon 89554643 89554744 89554643 ID=MsG0480023765.01.T01:exon:7800;Parent=MsG0480023765.01.T01
Chr4 exon 89554809 89554932 89554809 ID=MsG0480023765.01.T01:exon:7801;Parent=MsG0480023765.01.T01
Chr4 exon 89555028 89555088 89555028 ID=MsG0480023765.01.T01:exon:7802;Parent=MsG0480023765.01.T01
Chr4 exon 89555187 89555273 89555187 ID=MsG0480023765.01.T01:exon:7803;Parent=MsG0480023765.01.T01
Chr4 exon 89555352 89555567 89555352 ID=MsG0480023765.01.T01:exon:7804;Parent=MsG0480023765.01.T01
Chr4 exon 89555707 89555762 89555707 ID=MsG0480023765.01.T01:exon:7805;Parent=MsG0480023765.01.T01
Chr4 exon 89555850 89555985 89555850 ID=MsG0480023765.01.T01:exon:7806;Parent=MsG0480023765.01.T01
Chr4 exon 89556614 89557197 89556614 ID=MsG0480023765.01.T01:exon:7807;Parent=MsG0480023765.01.T01
Chr4 five_prime_UTR 89552826 89552999 89552826 ID=MsG0480023765.01.T01:five_prime_utr;Parent=MsG0480023765.01.T01
Chr4 CDS 89553000 89553059 89553000 ID=MsG0480023765.01.T01:cds;Parent=MsG0480023765.01.T01
Chr4 CDS 89554125 89554224 89554125 ID=MsG0480023765.01.T01:cds;Parent=MsG0480023765.01.T01
Chr4 CDS 89554643 89554744 89554643 ID=MsG0480023765.01.T01:cds;Parent=MsG0480023765.01.T01
Chr4 CDS 89554809 89554932 89554809 ID=MsG0480023765.01.T01:cds;Parent=MsG0480023765.01.T01
Chr4 CDS 89555028 89555088 89555028 ID=MsG0480023765.01.T01:cds;Parent=MsG0480023765.01.T01
Chr4 CDS 89555187 89555273 89555187 ID=MsG0480023765.01.T01:cds;Parent=MsG0480023765.01.T01
Chr4 CDS 89555352 89555567 89555352 ID=MsG0480023765.01.T01:cds;Parent=MsG0480023765.01.T01
Chr4 CDS 89555707 89555762 89555707 ID=MsG0480023765.01.T01:cds;Parent=MsG0480023765.01.T01
Chr4 CDS 89555850 89555985 89555850 ID=MsG0480023765.01.T01:cds;Parent=MsG0480023765.01.T01
Chr4 CDS 89556614 89556835 89556614 ID=MsG0480023765.01.T01:cds;Parent=MsG0480023765.01.T01
Chr4 three_prime_UTR 89556836 89557197 89556836 ID=MsG0480023765.01.T01:three_prime_utr;Parent=MsG0480023765.01.T01
Gene Sequence

>MsG0480023765.01.T01

ATGGCAGAATCAAATGATTCCGTTTCAGTTGATATGGAAAAGATCTTTCTTGGTGGAAAGGAGCATCATATTCAAACTGGCTGTGGTTCCGTATCTGTCATAGTCTACGGGGATCAGGACAAACCAGCTCTGATCACTTATCCAGATTTAGCGCTAAATTATATGTCATGTTTCCAAGGATTATTTTTCTGCCCAGAGGCTGCTTCTTTGCTGCTTCATAACTTTTGCATATATCATATCAGTCCTCCTGGACACGAGGTTTTTTCTCCTCTGGAACTTCAACAAGAGTTCTTGCAGTTAGGAGCTGCTGCGATTTGTTCTGATAATCATGCCCCTTCCGCTGAAGACTTGGCAGATCAAATAGTGGAGGTTCTCAACTATTTTAGGCTTGGTGCTGTGATGTGTATGGGAGTAACGGCTGGTGCTTATATCCTTACTCTTTTTGCAATGAAATATAGGAATCGCGTTGTTGGATTAATACTTGTATCTCCCTTATGCAAAGCACCTTCTTGGACTGAATGGTTTTATAACAAGGTGATGTCAAATTTGTTACATTTCTACGGCATGTGTGGTTTGCTAAAAGAGTGTTTACTTCAGCGGTACTTCAGCAAGGTATTGTACCGTGAGGATTGTAGCTCTGTCGTATTCCCTCTTTTATTTCATAAGTTGAATTTCCTTGCTCAACTTTATCAGGAAGTTCGCGGTAATGTTGAAGTTCCAGAGTCAGAGATAGTTCAAGCTTGCCGAAAGCTGCTGGATGAGAGAAAGAAAACAAATGTCTTGCGGTTTCTTCAAGCAATTGATCAGAGGCCTGATATTACAGAAGGATTAGAAAAATTAAACTGCCGTACGCTTATTTTTGTTGGGGACAGTTCCCCATTCCATTCTGAGGCTATCCACATGACTTCGAAACTTGATAGAAGATTTAGTGCCTTGGTTGAGGTCCAGGCTTGTGGATCAATGGTGACAGAGGAACAACCGCATGCGATGCTGATACCTATGGAGTATTTTCTGATGGGGTATGGGTTGTATAGGCCATGCAAGTTCAGTCACAGCCCAAGGAGCCCACTTAGCCCATCTTGCATCTCCCCGGAGCTTCTTTCTCCGGAAAGCATGGGGTTGAAGCTAAAGCCCATAAAGACGCGTGTTTCGCTGGAAGTTTGA
Protein sequence

>MsG0480023765.01.T01

MAESNDSVSVDMEKIFLGGKEHHIQTGCGSVSVIVYGDQDKPALITYPDLALNYMSCFQGLFFCPEAASLLLHNFCIYHISPPGHEVFSPLELQQEFLQLGAAAICSDNHAPSAEDLADQIVEVLNYFRLGAVMCMGVTAGAYILTLFAMKYRNRVVGLILVSPLCKAPSWTEWFYNKVMSNLLHFYGMCGLLKECLLQRYFSKVLYREDCSSVVFPLLFHKLNFLAQLYQEVRGNVEVPESEIVQACRKLLDERKKTNVLRFLQAIDQRPDITEGLEKLNCRTLIFVGDSSPFHSEAIHMTSKLDRRFSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPCKFSHSPRSPLSPSCISPELLSPESMGLKLKPIKTRVSLEV*