AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023798.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023798.01.T01 MTR_8g102380 98.688 381 5 0 1 381 1 381 0.0 780
MsG0480023798.01.T01 MTR_8g102380 98.792 331 4 0 1 331 1 331 0.0 677
MsG0480023798.01.T01 MTR_6g088810 80.000 380 72 3 1 378 1 378 0.0 619
MsG0480023798.01.T01 MTR_5g012600 53.952 291 131 2 88 377 71 359 9.33e-108 321
MsG0480023798.01.T01 MTR_7g102600 48.649 296 139 2 87 377 106 393 1.72e-100 303
MsG0480023798.01.T01 MTR_7g092780 47.315 298 141 2 90 379 100 389 3.21e-99 300
MsG0480023798.01.T01 MTR_1g086540 44.545 330 175 4 48 377 23 344 1.53e-93 284
MsG0480023798.01.T01 MTR_5g095490 41.692 331 188 3 49 377 30 357 1.54e-91 279
MsG0480023798.01.T01 MTR_6g024165 48.097 289 144 4 90 377 51 334 6.05e-89 272
MsG0480023798.01.T01 MTR_7g011530 45.172 290 147 4 88 372 14 296 1.22e-87 268
MsG0480023798.01.T01 MTR_6g012800 44.138 290 150 4 88 372 14 296 3.75e-84 259
MsG0480023798.01.T01 MTR_4g124740 43.046 302 146 7 83 377 57 339 5.20e-83 257
MsG0480023798.01.T01 MTR_2g033970 42.857 294 153 2 88 377 64 346 4.29e-76 239
MsG0480023798.01.T01 MTR_4g074290 40.753 292 162 3 88 377 79 361 4.88e-73 232
MsG0480023798.01.T01 MTR_2g073390 40.203 296 166 3 84 377 75 361 1.66e-72 231
MsG0480023798.01.T01 MTR_0009s0350 39.189 296 169 3 84 377 75 361 2.36e-71 228
MsG0480023798.01.T01 MTR_0009s0340 39.189 296 169 3 84 377 75 361 2.36e-71 228
MsG0480023798.01.T01 MTR_6g042660 38.226 327 182 5 57 378 11 322 2.78e-69 221
MsG0480023798.01.T01 MTR_2g436600 40.678 295 149 5 88 377 63 336 8.14e-69 220
MsG0480023798.01.T01 MTR_1g033050 38.305 295 165 2 88 377 26 308 4.60e-63 204
MsG0480023798.01.T01 MTR_5g088300 38.411 302 162 4 81 379 38 318 2.71e-62 203
MsG0480023798.01.T01 MTR_6g042690 38.558 319 175 6 66 378 26 329 3.01e-62 203
MsG0480023798.01.T01 MTR_5g093970 37.209 301 170 4 81 377 44 329 1.81e-60 199
MsG0480023798.01.T01 MTR_5g088290 36.755 302 168 3 81 379 49 330 2.81e-59 196
MsG0480023798.01.T01 MTR_8g036225 35.644 303 171 4 84 378 37 323 2.14e-58 193
MsG0480023798.01.T01 MTR_4g087980 37.217 309 162 7 88 379 214 507 1.99e-57 196
MsG0480023798.01.T01 MTR_5g088280 36.513 304 165 4 81 379 40 320 4.51e-57 189
MsG0480023798.01.T01 MTR_4g051810 37.966 295 158 5 87 377 44 317 5.56e-57 189
MsG0480023798.01.T01 MTR_7g108905 37.134 307 165 7 88 379 254 547 1.28e-56 194
MsG0480023798.01.T01 MTR_8g093460 34.545 330 180 8 72 379 227 542 2.04e-56 194
MsG0480023798.01.T01 MTR_1g083520 36.570 309 164 7 88 377 222 517 5.79e-55 189
MsG0480023798.01.T01 MTR_8g023310 36.156 307 168 7 88 379 287 580 9.77e-55 190
MsG0480023798.01.T01 MTR_2g044810 36.928 306 166 7 88 379 233 525 1.05e-54 189
MsG0480023798.01.T01 MTR_4g025690 38.158 304 159 7 88 377 214 502 1.13e-54 188
MsG0480023798.01.T01 MTR_4g087970 37.217 309 162 7 88 379 215 508 3.03e-54 187
MsG0480023798.01.T01 MTR_8g042910 32.905 389 216 12 18 377 229 601 1.61e-53 187
MsG0480023798.01.T01 MTR_7g108875 36.482 307 165 7 88 377 260 553 2.44e-53 186
MsG0480023798.01.T01 MTR_7g053360 35.329 334 180 12 66 377 197 516 9.13e-53 183
MsG0480023798.01.T01 MTR_7g112580 35.473 296 172 5 88 377 249 531 9.14e-53 184
MsG0480023798.01.T01 MTR_3g095920 33.645 321 176 7 82 378 247 554 9.28e-53 184
MsG0480023798.01.T01 MTR_3g008700 35.629 334 179 12 66 377 197 516 1.70e-52 182
MsG0480023798.01.T01 MTR_4g035980 34.400 375 197 14 37 377 169 528 3.22e-52 182
MsG0480023798.01.T01 MTR_4g124520 35.484 310 167 9 88 379 218 512 3.58e-52 181
MsG0480023798.01.T01 MTR_3g008720 34.324 370 202 14 35 377 161 516 4.03e-52 181
MsG0480023798.01.T01 MTR_3g008640 36.808 307 161 10 66 353 197 489 6.42e-52 181
MsG0480023798.01.T01 MTR_3g033690 35.030 334 181 12 66 377 196 515 2.19e-51 179
MsG0480023798.01.T01 MTR_3g010770 31.646 395 215 11 18 377 190 564 6.00e-51 179
MsG0480023798.01.T01 MTR_8g104645 38.462 286 148 7 107 377 89 361 2.57e-50 173
MsG0480023798.01.T01 MTR_3g091380 31.319 364 209 9 35 379 247 588 2.70e-50 178
MsG0480023798.01.T01 MTR_1g054880 34.713 314 175 7 81 377 247 547 2.77e-50 177
MsG0480023798.01.T01 MTR_7g108890 35.032 314 174 8 81 377 251 551 6.08e-50 176
MsG0480023798.01.T01 MTR_8g042900 35.667 300 170 5 88 377 284 570 1.07e-49 176
MsG0480023798.01.T01 MTR_4g025670 35.577 312 166 7 88 379 184 480 1.31e-49 174
MsG0480023798.01.T01 MTR_1g088020 34.528 307 171 7 88 377 251 544 2.72e-49 174
MsG0480023798.01.T01 MTR_4g025730 37.624 303 159 9 88 377 213 498 6.18e-49 172
MsG0480023798.01.T01 MTR_7g108900 33.968 315 177 7 81 377 248 549 8.42e-49 173
MsG0480023798.01.T01 MTR_2g044880 31.909 351 197 9 45 377 188 514 8.58e-49 172
MsG0480023798.01.T01 MTR_8g104655 37.762 286 150 7 107 377 258 530 4.50e-48 171
MsG0480023798.01.T01 MTR_1g008140 33.968 315 179 7 81 379 297 598 6.19e-48 172
MsG0480023798.01.T01 MTR_1g083510 34.091 308 170 8 88 377 280 572 2.81e-47 169
MsG0480023798.01.T01 MTR_4g120290 35.315 286 157 5 81 353 259 529 8.36e-47 168
MsG0480023798.01.T01 MTR_1g088225 34.202 307 170 8 88 377 251 542 1.12e-46 167
MsG0480023798.01.T01 MTR_4g120280 35.664 286 156 5 81 353 259 529 1.27e-46 168
MsG0480023798.01.T01 MTR_7g050950 34.091 308 174 7 88 379 250 544 1.71e-46 167
MsG0480023798.01.T01 MTR_3g010780 33.333 300 177 5 88 377 277 563 2.03e-46 167
MsG0480023798.01.T01 MTR_7g050980 34.177 316 178 7 81 379 244 546 7.33e-46 165
MsG0480023798.01.T01 MTR_2g044660 32.492 317 184 8 75 378 323 622 1.74e-45 165
MsG0480023798.01.T01 MTR_7g112590 30.145 345 208 9 50 377 244 572 6.09e-45 163
MsG0480023798.01.T01 MTR_4g124550 34.891 321 176 8 75 379 281 584 1.01e-44 163
MsG0480023798.01.T01 MTR_8g023150 32.362 343 200 9 50 379 250 573 1.57e-44 162
MsG0480023798.01.T01 MTR_0458s0030 34.717 265 146 6 127 377 52 303 1.64e-44 156
MsG0480023798.01.T01 MTR_1g088040 34.717 265 146 6 127 377 52 303 1.64e-44 156
MsG0480023798.01.T01 MTR_7g050870 34.494 316 177 7 81 379 243 545 4.20e-44 160
MsG0480023798.01.T01 MTR_7g107180 33.013 312 174 7 81 379 9 298 6.58e-44 154
MsG0480023798.01.T01 MTR_2g436040 33.663 303 165 9 81 365 233 517 1.03e-43 160
MsG0480023798.01.T01 MTR_2g105560 31.833 311 177 5 81 379 43 330 1.06e-41 149
MsG0480023798.01.T01 MTR_2g044810 37.069 232 127 5 162 379 230 456 1.24e-41 152
MsG0480023798.01.T01 MTR_7g110440 33.333 324 175 8 81 380 260 566 1.55e-41 154
MsG0480023798.01.T01 MTR_1g086190 33.121 314 176 7 81 377 256 552 6.68e-41 152
MsG0480023798.01.T01 MTR_7g110490 35.540 287 156 5 81 353 260 531 8.86e-41 152
MsG0480023798.01.T01 MTR_7g110510 35.540 287 156 5 81 353 260 531 8.86e-41 152
MsG0480023798.01.T01 MTR_5g083620 32.476 311 174 10 88 379 54 347 2.50e-40 146
MsG0480023798.01.T01 MTR_6g025590 44.512 164 86 2 90 253 59 217 5.87e-40 142
MsG0480023798.01.T01 MTR_2g436050 35.315 286 157 8 81 353 251 521 6.97e-40 149
MsG0480023798.01.T01 MTR_0618s0020 37.615 218 116 5 175 377 5 217 1.39e-39 140
MsG0480023798.01.T01 MTR_1g083470 31.965 341 174 12 72 377 242 559 1.57e-39 148
MsG0480023798.01.T01 MTR_1g083500 31.965 341 174 12 72 377 242 559 1.57e-39 148
MsG0480023798.01.T01 MTR_1g083490 31.845 336 179 11 68 377 253 564 1.58e-39 148
MsG0480023798.01.T01 MTR_7g110420 33.898 295 158 6 81 353 260 539 2.73e-39 147
MsG0480023798.01.T01 MTR_1g086210 32.258 310 174 7 81 371 254 546 3.26e-39 147
MsG0480023798.01.T01 MTR_4g005170 30.909 330 190 9 68 377 253 564 3.98e-39 147
MsG0480023798.01.T01 MTR_6g024200 49.219 128 64 1 252 378 150 277 6.15e-39 140
MsG0480023798.01.T01 MTR_8g088610 31.699 306 180 8 88 377 73 365 1.17e-38 142
MsG0480023798.01.T01 MTR_4g005180 30.303 330 192 9 68 377 235 546 1.03e-37 143
MsG0480023798.01.T01 MTR_7g110560 30.820 305 182 8 88 377 248 538 1.33e-35 137
MsG0480023798.01.T01 MTR_8g104580 31.449 283 139 7 107 377 250 489 1.05e-31 125
MsG0480023798.01.T01 MTR_7g111560 27.536 345 214 7 55 377 215 545 1.36e-31 125
MsG0480023798.01.T01 MTR_7g110430 29.781 319 159 7 81 380 260 532 3.98e-30 121
MsG0480023798.01.T01 MTR_7g102580 49.462 93 42 1 155 247 66 153 2.40e-24 98.2
MsG0480023798.01.T01 MTR_7g102570 43.137 102 50 3 250 345 1 100 1.30e-22 92.4
MsG0480023798.01.T01 MTR_0408s0030 38.793 116 70 1 264 378 34 149 5.50e-22 91.7
MsG0480023798.01.T01 MTR_4g130790 31.953 169 99 4 110 273 55 212 1.84e-20 90.5
MsG0480023798.01.T01 MTR_5g083590 24.579 297 167 8 88 379 15 259 1.44e-14 73.6
MsG0480023798.01.T01 MTR_6g006340 40.816 98 35 2 154 251 27 101 1.09e-13 67.4
MsG0480023798.01.T01 MTR_2g088300 45.070 71 36 3 312 379 4 74 2.58e-13 65.1
MsG0480023798.01.T01 MTR_2g039530 27.143 280 165 12 88 353 60 314 3.04e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023798.01.T01 AT5G19730 76.257 358 83 1 20 377 26 381 0.0 593
MsG0480023798.01.T01 AT5G47500 43.915 378 183 6 1 377 8 357 1.22e-102 308
MsG0480023798.01.T01 AT1G05310 47.973 296 138 2 90 377 101 388 1.20e-99 301
MsG0480023798.01.T01 AT2G36710 48.208 307 145 4 76 377 88 385 1.71e-99 301
MsG0480023798.01.T01 AT2G36700 44.863 292 151 2 88 377 50 333 1.76e-92 281
MsG0480023798.01.T01 AT3G29090 47.241 290 141 4 88 372 15 297 5.23e-90 274
MsG0480023798.01.T01 AT2G21610 45.608 296 141 5 84 377 60 337 6.98e-87 267
MsG0480023798.01.T01 AT2G21610 45.608 296 141 5 84 377 55 332 7.12e-87 267
MsG0480023798.01.T01 AT5G55590 44.521 292 157 3 88 377 90 378 9.74e-84 260
MsG0480023798.01.T01 AT5G07430 38.259 379 195 7 7 377 8 355 1.09e-83 259
MsG0480023798.01.T01 AT5G61680 44.257 296 155 2 83 377 72 358 3.60e-81 253
MsG0480023798.01.T01 AT5G07410 39.368 348 188 6 38 377 23 355 1.64e-80 251
MsG0480023798.01.T01 AT1G69940 43.390 295 156 3 85 377 70 355 2.39e-80 251
MsG0480023798.01.T01 AT5G07420 36.528 386 205 8 1 377 1 355 3.51e-79 248
MsG0480023798.01.T01 AT3G17060 38.644 295 166 2 87 377 53 336 5.88e-77 241
MsG0480023798.01.T01 AT5G55590 44.898 245 130 3 88 330 90 331 8.23e-71 225
MsG0480023798.01.T01 AT5G26810 36.012 336 185 7 58 379 16 335 4.98e-65 210
MsG0480023798.01.T01 AT2G19150 38.305 295 164 2 90 378 51 333 1.10e-62 204
MsG0480023798.01.T01 AT5G18990 35.275 309 179 3 81 380 30 326 8.35e-62 202
MsG0480023798.01.T01 AT3G24130 34.169 319 188 4 72 380 25 331 3.35e-59 195
MsG0480023798.01.T01 AT2G47280 36.943 314 174 6 76 380 32 330 7.37e-58 192
MsG0480023798.01.T01 AT5G49180 35.669 314 170 6 81 377 261 559 7.83e-56 192
MsG0480023798.01.T01 AT3G60730 37.919 298 157 6 95 377 224 508 1.15e-55 191
MsG0480023798.01.T01 AT5G64640 35.599 309 165 7 90 376 301 597 2.60e-55 192
MsG0480023798.01.T01 AT5G09760 35.370 311 168 6 87 376 248 546 3.53e-55 190
MsG0480023798.01.T01 AT5G09760 35.370 311 168 6 87 376 274 572 5.49e-55 190
MsG0480023798.01.T01 AT3G05620 37.162 296 168 5 87 377 248 530 5.87e-55 189
MsG0480023798.01.T01 AT3G05610 34.185 313 175 6 81 377 257 554 1.18e-54 191
MsG0480023798.01.T01 AT3G06830 35.691 311 174 6 81 377 259 557 1.89e-54 189
MsG0480023798.01.T01 AT5G27870 34.185 313 175 6 81 377 254 551 1.41e-53 189
MsG0480023798.01.T01 AT1G11580 37.134 307 161 8 88 377 255 546 2.04e-53 186
MsG0480023798.01.T01 AT4G02330 36.013 311 161 8 88 377 267 560 2.06e-53 186
MsG0480023798.01.T01 AT1G11580 37.134 307 161 8 88 377 276 567 2.17e-53 186
MsG0480023798.01.T01 AT2G45220 38.019 313 163 8 81 379 208 503 3.66e-53 184
MsG0480023798.01.T01 AT2G19150 40.891 247 128 2 90 330 51 285 1.35e-52 176
MsG0480023798.01.T01 AT4G15980 35.197 304 171 6 88 377 400 691 8.03e-52 184
MsG0480023798.01.T01 AT4G33230 35.714 308 169 8 88 380 305 598 8.03e-52 182
MsG0480023798.01.T01 AT4G15980 35.197 304 171 6 88 377 410 701 1.22e-51 183
MsG0480023798.01.T01 AT1G23200 39.203 301 160 7 88 379 259 545 1.37e-51 181
MsG0480023798.01.T01 AT2G26440 35.737 319 177 7 75 379 234 538 1.88e-51 180
MsG0480023798.01.T01 AT5G04960 36.013 311 174 6 78 377 257 553 1.99e-51 181
MsG0480023798.01.T01 AT1G02810 37.367 281 148 6 88 353 273 540 6.03e-51 179
MsG0480023798.01.T01 AT3G59010 36.429 280 156 5 107 379 255 519 9.98e-51 178
MsG0480023798.01.T01 AT3G43270 34.358 358 192 8 41 379 183 516 1.89e-50 177
MsG0480023798.01.T01 AT4G00190 34.405 311 177 8 81 377 166 463 2.80e-50 176
MsG0480023798.01.T01 AT4G02300 33.876 307 175 6 88 379 230 523 3.28e-50 177
MsG0480023798.01.T01 AT4G33220 32.486 354 195 9 45 379 65 393 4.97e-50 173
MsG0480023798.01.T01 AT4G02320 34.076 314 179 6 81 379 209 509 5.36e-50 176
MsG0480023798.01.T01 AT2G43050 36.299 281 156 5 107 379 242 507 8.72e-50 175
MsG0480023798.01.T01 AT3G10710 35.179 307 176 5 81 377 257 550 9.86e-50 176
MsG0480023798.01.T01 AT3G10720 35.831 307 163 8 90 377 313 604 3.76e-49 175
MsG0480023798.01.T01 AT4G03930 33.993 303 174 6 88 377 224 513 6.14e-49 173
MsG0480023798.01.T01 AT1G53840 33.993 303 172 7 88 377 289 576 8.33e-49 174
MsG0480023798.01.T01 AT4G33220 32.486 354 195 9 45 379 186 514 9.73e-49 172
MsG0480023798.01.T01 AT5G51490 35.737 319 167 9 81 377 223 525 2.16e-48 172
MsG0480023798.01.T01 AT1G53830 35.831 307 169 7 88 379 285 578 2.30e-48 172
MsG0480023798.01.T01 AT5G04970 35.738 305 166 7 90 377 318 609 2.42e-48 173
MsG0480023798.01.T01 AT2G26450 32.573 307 178 8 88 379 310 602 3.20e-48 172
MsG0480023798.01.T01 AT3G27980 34.323 303 173 6 88 377 197 486 1.95e-47 168
MsG0480023798.01.T01 AT3G10720 36.538 260 138 6 132 377 2 248 3.05e-46 159
MsG0480023798.01.T01 AT1G11590 33.443 305 177 6 88 379 224 515 2.11e-45 164
MsG0480023798.01.T01 AT5G53370 34.416 308 173 7 88 379 318 612 2.73e-45 165
MsG0480023798.01.T01 AT5G53370 34.416 308 173 7 88 379 282 576 2.75e-45 164
MsG0480023798.01.T01 AT1G11370 36.296 270 146 7 64 321 31 286 3.71e-45 157
MsG0480023798.01.T01 AT3G14310 35.179 307 171 7 88 379 290 583 4.43e-45 164
MsG0480023798.01.T01 AT2G47550 34.276 283 159 6 109 377 278 547 6.71e-45 163
MsG0480023798.01.T01 AT3G47400 33.989 356 199 10 40 377 246 583 5.60e-44 160
MsG0480023798.01.T01 AT3G49220 30.682 352 209 9 44 379 255 587 1.33e-43 160
MsG0480023798.01.T01 AT3G49220 30.682 352 209 9 44 379 300 632 1.68e-43 160
MsG0480023798.01.T01 AT5G51500 35.127 316 173 9 81 377 227 529 1.92e-43 158
MsG0480023798.01.T01 AT5G20860 35.034 294 151 10 107 379 255 529 1.31e-42 156
MsG0480023798.01.T01 AT2G47030 32.797 311 184 7 81 377 278 577 5.29e-42 155
MsG0480023798.01.T01 AT2G47040 32.476 311 185 7 81 377 285 584 3.10e-41 153
MsG0480023798.01.T01 AT3G14300 31.778 343 198 14 49 377 638 958 1.82e-40 153
MsG0480023798.01.T01 AT3G62170 32.051 312 187 7 80 377 277 577 1.01e-39 149
MsG0480023798.01.T01 AT5G20860 32.246 276 149 9 126 380 244 502 2.18e-36 139
MsG0480023798.01.T01 AT1G44980 30.588 170 103 3 88 256 86 241 2.73e-19 86.7

Find 105 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTCTGTTGATTTCATATT+TGG 0.099818 4:+89932659 MsG0480023798.01.T01:CDS
TGAATTGTTGTTCTGATTCT+TGG 0.168623 4:-89931773 None:intergenic
TTTCTTGGCTGCAAATTCTT+AGG 0.190667 4:+89932575 MsG0480023798.01.T01:CDS
GCTGATACTGCCATGTTTCT+TGG 0.191832 4:+89932560 MsG0480023798.01.T01:CDS
CTTCTACAATTTGTCATTGA+TGG 0.210970 4:-89934230 None:intergenic
TTTCCAACTGCTCCTGGTTT+AGG 0.252792 4:-89932512 None:intergenic
CCAAAACCTTCTACTGGATT+TGG 0.263257 4:+89931726 MsG0480023798.01.T01:CDS
TTTAGTGAGAGTTGTCATTA+AGG 0.276837 4:+89931953 MsG0480023798.01.T01:CDS
CCAAATCCAGTAGAAGGTTT+TGG 0.315447 4:-89931726 None:intergenic
CAGAACAACAATTCATGAAA+TGG 0.329303 4:+89931781 MsG0480023798.01.T01:CDS
ATCTGCACCTGCTCCTTGTA+TGG 0.334201 4:-89932263 None:intergenic
ATTATCAGGACTGTATTCTA+TGG 0.340242 4:+89934000 MsG0480023798.01.T01:intron
ACTGCTCCTGGTTTAGGAAT+TGG 0.346916 4:-89932506 None:intergenic
TTCTTGGACTTTGGTCATAT+TGG 0.347511 4:-89931757 None:intergenic
TTCCCAAAGGATGGTACAAT+TGG 0.348726 4:+89933169 MsG0480023798.01.T01:CDS
ACATAACTGAGTGAAATAAA+TGG 0.353799 4:-89934105 None:intergenic
TACAAAGATTGTTATATTGA+AGG 0.357215 4:+89932638 MsG0480023798.01.T01:CDS
ACCCCAATTGTACCATCCTT+TGG 0.359140 4:-89933172 None:intergenic
GACATTCCAAATCCAGTAGA+AGG 0.361666 4:-89931732 None:intergenic
CACTGTAAGGTCACGGGATC+AGG 0.368778 4:+89933069 MsG0480023798.01.T01:CDS
CACTATACCTTGGAAGGGCT+TGG 0.370972 4:+89933094 MsG0480023798.01.T01:CDS
GGACAGACACTAGGAACTTA+TGG 0.372421 4:+89932340 MsG0480023798.01.T01:CDS
TTCTTGGCTGCAAATTCTTA+GGG 0.376682 4:+89932576 MsG0480023798.01.T01:CDS
AGATAAAACAATTGTTCAAT+GGG 0.387504 4:+89932282 MsG0480023798.01.T01:CDS
TTGTTCTGATTCTTGGACTT+TGG 0.388276 4:-89931766 None:intergenic
ACTATACCTTGGAAGGGCTT+GGG 0.393438 4:+89933095 MsG0480023798.01.T01:CDS
ATTTCACTCAGTTATGTTGA+TGG 0.396068 4:+89934111 MsG0480023798.01.T01:CDS
CCCCAATTGTACCATCCTTT+GGG 0.398050 4:-89933171 None:intergenic
GGACCAGGAGCAAGCTATGC+AGG 0.398624 4:+89934039 MsG0480023798.01.T01:CDS
AAAATGAAATTCATGTTTGA+CGG 0.403170 4:-89931633 None:intergenic
CGCAAAGACAACCCGAGAAA+AGG 0.409041 4:-89933121 None:intergenic
TGTCTTTGCGTACACTTACA+TGG 0.423936 4:+89933134 MsG0480023798.01.T01:CDS
CATGCAATAGCACAAAATAT+AGG 0.426475 4:+89932988 MsG0480023798.01.T01:CDS
GGGACTTACATTTCACGGTT+GGG 0.437628 4:-89933198 None:intergenic
TCCCAAAGGATGGTACAATT+GGG 0.437668 4:+89933170 MsG0480023798.01.T01:CDS
TGTGGGTGGAGAATGTGATT+TGG 0.440089 4:-89931569 None:intergenic
CTCCCTGCATAGCTTGCTCC+TGG 0.441794 4:-89934042 None:intergenic
CAGATAAAACAATTGTTCAA+TGG 0.446316 4:+89932281 MsG0480023798.01.T01:CDS
ACTCCTAATCCTGGAACAAA+AGG 0.448427 4:+89932319 MsG0480023798.01.T01:CDS
ATGAAATGGGTGAAATTTGT+TGG 0.448846 4:+89931795 MsG0480023798.01.T01:CDS
TTTCACTCAGTTATGTTGAT+GGG 0.450969 4:+89934112 MsG0480023798.01.T01:CDS
AACTCTCACTAAATTAATGA+AGG 0.451346 4:-89931943 None:intergenic
AGAACAACAATTCATGAAAT+GGG 0.459308 4:+89931782 MsG0480023798.01.T01:CDS
GACACACTGTATGATCATAT+TGG 0.465278 4:+89932605 MsG0480023798.01.T01:CDS
CTTCGACCAAAACCTTCTAC+TGG 0.470194 4:+89931720 MsG0480023798.01.T01:CDS
GCAAAGACAACCCGAGAAAA+GGG 0.472227 4:-89933120 None:intergenic
TAAACGTTCAAAGTGTAAGA+AGG 0.474363 4:-89931864 None:intergenic
ATGTTCTTAGCAATGAAATA+AGG 0.476305 4:-89932388 None:intergenic
TTGACGGATTATTCTTAGAA+AGG 0.478847 4:-89931617 None:intergenic
TGGGACTTACATTTCACGGT+TGG 0.497506 4:-89933199 None:intergenic
ATGATGGGACTTACATTTCA+CGG 0.497513 4:-89933203 None:intergenic
CTATACCTTGGAAGGGCTTG+GGG 0.503363 4:+89933096 MsG0480023798.01.T01:CDS
CTGCAAATTCTTAGGGGCAC+AGG 0.507906 4:+89932583 MsG0480023798.01.T01:CDS
GTATGACCTTGTGTTACAAT+GGG 0.508831 4:-89931690 None:intergenic
GTTTATAAACATTCAAGTAA+AGG 0.509086 4:+89931882 MsG0480023798.01.T01:CDS
ATTCTCGTTTGTACACTGTA+AGG 0.509323 4:+89933056 MsG0480023798.01.T01:CDS
CAGGGAGGGTAGCATGGTCA+AGG 0.509747 4:+89934058 MsG0480023798.01.T01:CDS
TCACTAAATTAATGAAGGGA+AGG 0.510892 4:-89931938 None:intergenic
CCAGGAGCAGTTGGAAAACA+AGG 0.518010 4:+89932518 MsG0480023798.01.T01:CDS
CAGGAGCACTATACCTTGGA+AGG 0.518471 4:+89933088 MsG0480023798.01.T01:CDS
AATGAAGGGAAGGGAATCAA+TGG 0.522819 4:-89931928 None:intergenic
ATTCCTAAACCAGGAGCAGT+TGG 0.534229 4:+89932509 MsG0480023798.01.T01:CDS
CAATACAAATGCACAGGACC+AGG 0.542582 4:+89934024 MsG0480023798.01.T01:CDS
GTTGTCATTAAGGTTCATGC+AGG 0.543936 4:+89931963 MsG0480023798.01.T01:CDS
ACTGCTCTAACTCCTAATCC+TGG 0.546600 4:+89932310 MsG0480023798.01.T01:CDS
AGGAGCAAGCTATGCAGGGA+GGG 0.548652 4:+89934044 MsG0480023798.01.T01:CDS
TGTATGACCTTGTGTTACAA+TGG 0.554367 4:-89931691 None:intergenic
GTAACACAAGGTCATACAAA+GGG 0.557579 4:+89931696 MsG0480023798.01.T01:CDS
TCTTGGCTGCAAATTCTTAG+GGG 0.559516 4:+89932577 MsG0480023798.01.T01:CDS
TATAAACATTCAAGTAAAGG+AGG 0.562407 4:+89931885 MsG0480023798.01.T01:CDS
TTCATAACCATACAAGGAGC+AGG 0.563739 4:+89932256 MsG0480023798.01.T01:CDS
CACTAAATTAATGAAGGGAA+GGG 0.571506 4:-89931937 None:intergenic
GAATTTGCAGCCAAGAAACA+TGG 0.573706 4:-89932570 None:intergenic
AAATCATTCATAACCATACA+AGG 0.574099 4:+89932250 MsG0480023798.01.T01:CDS
GCTATGCAGGGAGGGTAGCA+TGG 0.579769 4:+89934052 MsG0480023798.01.T01:CDS
AGGGACCCCAAGCCCTTCCA+AGG 0.581271 4:-89933101 None:intergenic
TTGTCATTAAGGTTCATGCA+GGG 0.586091 4:+89931964 MsG0480023798.01.T01:CDS
GACAATATCATCATTCCCAA+AGG 0.591649 4:+89933156 MsG0480023798.01.T01:CDS
ACTCTCACTAAATTAATGAA+GGG 0.591947 4:-89931942 None:intergenic
GGATCAGGAGCACTATACCT+TGG 0.593609 4:+89933084 MsG0480023798.01.T01:CDS
TATGGACAATACAAATGCAC+AGG 0.596559 4:+89934018 MsG0480023798.01.T01:CDS
CACTGTATGATCATATTGGT+AGG 0.597923 4:+89932609 MsG0480023798.01.T01:CDS
GTTTGTACACTGTAAGGTCA+CGG 0.604573 4:+89933062 MsG0480023798.01.T01:CDS
GACCAGGAGCAAGCTATGCA+GGG 0.604695 4:+89934040 MsG0480023798.01.T01:CDS
ATATCATCATTCCCAAAGGA+TGG 0.606490 4:+89933160 MsG0480023798.01.T01:CDS
TTTGTACACTGTAAGGTCAC+GGG 0.607107 4:+89933063 MsG0480023798.01.T01:CDS
GTCAAGGGAGCTCACTGATG+AGG 0.608682 4:+89934074 MsG0480023798.01.T01:CDS
CCCAAAGGATGGTACAATTG+GGG 0.615957 4:+89933171 MsG0480023798.01.T01:CDS
GGAACAAAAGGACAGACACT+AGG 0.617346 4:+89932331 MsG0480023798.01.T01:CDS
GAGCACTAACAGCACAAGGA+AGG 0.618980 4:+89933010 MsG0480023798.01.T01:CDS
AAATGGGTGAAATTTGTTGG+TGG 0.620240 4:+89931798 MsG0480023798.01.T01:CDS
AAGGGAGCTCACTGATGAGG+AGG 0.622504 4:+89934077 MsG0480023798.01.T01:CDS
AGCAGTTTATTAGAAGACAC+GGG 0.624898 4:+89933033 MsG0480023798.01.T01:CDS
CAAAATCCCATTGTAACACA+AGG 0.627538 4:+89931684 MsG0480023798.01.T01:CDS
AGGGAGGGTAGCATGGTCAA+GGG 0.628494 4:+89934059 MsG0480023798.01.T01:CDS
GAGCAGTTTATTAGAAGACA+CGG 0.630230 4:+89933032 MsG0480023798.01.T01:CDS
TGTAACACAAGGTCATACAA+AGG 0.630640 4:+89931695 MsG0480023798.01.T01:CDS
AGCAGTTGGAAAACAAGGAG+TGG 0.636734 4:+89932523 MsG0480023798.01.T01:CDS
AGGAGCACTATACCTTGGAA+GGG 0.637862 4:+89933089 MsG0480023798.01.T01:CDS
TGTCATTAAGGTTCATGCAG+GGG 0.638507 4:+89931965 MsG0480023798.01.T01:CDS
ACTGCTCCAATTCCTAAACC+AGG 0.656258 4:+89932500 MsG0480023798.01.T01:CDS
GTTATGTTGATGGGTCTGAG+TGG 0.659456 4:+89934121 MsG0480023798.01.T01:CDS
GATAAAACAATTGTTCAATG+GGG 0.666663 4:+89932283 MsG0480023798.01.T01:CDS
ATAGGAGCACTAACAGCACA+AGG 0.678436 4:+89933006 MsG0480023798.01.T01:CDS
CAGGAGCAAGCTATGCAGGG+AGG 0.680711 4:+89934043 MsG0480023798.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATTAAAATATTAGAATT+AGG - Chr4:89932822-89932841 None:intergenic 10.0%
!! AAAATATTAGAATTAGGATT+AGG - Chr4:89932816-89932835 None:intergenic 15.0%
!! AACAAATAAAAGAAAAATGT+GGG - Chr4:89931589-89931608 None:intergenic 15.0%
!! ATCAAGTATATAGTTAATTA+GGG + Chr4:89933573-89933592 MsG0480023798.01.T01:intron 15.0%
!! ATGTATATGAAAATAACTAA+TGG - Chr4:89932909-89932928 None:intergenic 15.0%
!! TAACAAATAAAAGAAAAATG+TGG - Chr4:89931590-89931609 None:intergenic 15.0%
!! TATCAAGTATATAGTTAATT+AGG + Chr4:89933572-89933591 MsG0480023798.01.T01:intron 15.0%
!!! ATTGATCAAAATTTAGAATT+AGG - Chr4:89933881-89933900 None:intergenic 15.0%
!! AAAATGAAATTCATGTTTGA+CGG - Chr4:89931636-89931655 None:intergenic 20.0%
!! AAATTGTACCCAAAAATAAA+AGG + Chr4:89933506-89933525 MsG0480023798.01.T01:intron 20.0%
!! AGATAAAACAATTGTTCAAT+GGG + Chr4:89932282-89932301 MsG0480023798.01.T01:CDS 20.0%
!! AGCATTATGCATATATATAT+AGG + Chr4:89933826-89933845 MsG0480023798.01.T01:intron 20.0%
!! GCATTATGCATATATATATA+GGG + Chr4:89933827-89933846 MsG0480023798.01.T01:intron 20.0%
!! GTTTATAAACATTCAAGTAA+AGG + Chr4:89931882-89931901 MsG0480023798.01.T01:CDS 20.0%
!! TAAAATTTCACTAATGAAGT+TGG + Chr4:89932942-89932961 MsG0480023798.01.T01:intron 20.0%
!! TACAAAGATTGTTATATTGA+AGG + Chr4:89932638-89932657 MsG0480023798.01.T01:CDS 20.0%
!! TATATATAGGGTCTAAAAAA+AGG + Chr4:89933839-89933858 MsG0480023798.01.T01:intron 20.0%
!! TATGAAAATAACTAATGGAA+TGG - Chr4:89932904-89932923 None:intergenic 20.0%
!! TGCTAATAAAGTTATAGATA+AGG + Chr4:89933800-89933819 MsG0480023798.01.T01:intron 20.0%
!!! AACAAAAACAATTAGTTTGA+TGG - Chr4:89933780-89933799 None:intergenic 20.0%
!!! ATTTTTTGTTCTCATTCTAT+TGG + Chr4:89933967-89933986 MsG0480023798.01.T01:intron 20.0%
!!! TTTTTTGTTCTCATTCTATT+GGG + Chr4:89933968-89933987 MsG0480023798.01.T01:intron 20.0%
! AAATAAAAGAAAAATGTGGG+TGG - Chr4:89931586-89931605 None:intergenic 25.0%
! AAATCATTCATAACCATACA+AGG + Chr4:89932250-89932269 MsG0480023798.01.T01:CDS 25.0%
! AACTAATGGAATGGATAAAA+GGG - Chr4:89932895-89932914 None:intergenic 25.0%
! AACTCTCACTAAATTAATGA+AGG - Chr4:89931946-89931965 None:intergenic 25.0%
! ACATAACTGAGTGAAATAAA+TGG - Chr4:89934108-89934127 None:intergenic 25.0%
! ACTCTCACTAAATTAATGAA+GGG - Chr4:89931945-89931964 None:intergenic 25.0%
! AGAACAACAATTCATGAAAT+GGG + Chr4:89931782-89931801 MsG0480023798.01.T01:CDS 25.0%
! AGAATGTGACAAAATTGTAA+TGG - Chr4:89932040-89932059 None:intergenic 25.0%
! ATGTTCTTAGCAATGAAATA+AGG - Chr4:89932391-89932410 None:intergenic 25.0%
! CAGATAAAACAATTGTTCAA+TGG + Chr4:89932281-89932300 MsG0480023798.01.T01:CDS 25.0%
! GATAAAACAATTGTTCAATG+GGG + Chr4:89932283-89932302 MsG0480023798.01.T01:CDS 25.0%
! GCTTGGTTATTGAATTAAAA+TGG - Chr4:89933361-89933380 None:intergenic 25.0%
! GTTAAATTAATCATCTCATG+AGG + Chr4:89932766-89932785 MsG0480023798.01.T01:intron 25.0%
! TAACTAATGGAATGGATAAA+AGG - Chr4:89932896-89932915 None:intergenic 25.0%
! TATAAACATTCAAGTAAAGG+AGG + Chr4:89931885-89931904 MsG0480023798.01.T01:CDS 25.0%
! TGCATAATGTTGTAATTGTA+AGG - Chr4:89933256-89933275 None:intergenic 25.0%
! TTTACACATATAATGTACTG+TGG - Chr4:89933302-89933321 None:intergenic 25.0%
!! GATCAAAATTTAGAATTAGG+TGG - Chr4:89933878-89933897 None:intergenic 25.0%
!!! AATGAAGTTGGTAATAACAT+AGG + Chr4:89932954-89932973 MsG0480023798.01.T01:intron 25.0%
!!! AGAAGGAAAAAGCTTATTTT+TGG - Chr4:89931850-89931869 None:intergenic 25.0%
!!! ATGAAGTTGGTAATAACATA+GGG + Chr4:89932955-89932974 MsG0480023798.01.T01:intron 25.0%
!!! ATTCTTTCTTTTGATTTGAG+AGG + Chr4:89934148-89934167 MsG0480023798.01.T01:exon 25.0%
!!! CACATTTCTAGTATATATGA+TGG - Chr4:89933481-89933500 None:intergenic 25.0%
!!! CTGTTTTTTGTTCTGTTTTA+TGG + Chr4:89932058-89932077 MsG0480023798.01.T01:intron 25.0%
!!! CTTACTCACCTTTTATTTTT+GGG - Chr4:89933517-89933536 None:intergenic 25.0%
!!! GGTGTTTTTTTTGTTTTAGT+TGG + Chr4:89932112-89932131 MsG0480023798.01.T01:intron 25.0%
!!! GTTATGAATGATTTTAATGC+AGG - Chr4:89932244-89932263 None:intergenic 25.0%
!!! TCTTACTCACCTTTTATTTT+TGG - Chr4:89933518-89933537 None:intergenic 25.0%
ACAACACAAACATAGAAATG+AGG - Chr4:89932441-89932460 None:intergenic 30.0%
ACATGTAGAATTGCTAAAGT+GGG - Chr4:89933644-89933663 None:intergenic 30.0%
ATAGAATACAGTCCTGATAA+TGG - Chr4:89934001-89934020 None:intergenic 30.0%
ATGAAATGGGTGAAATTTGT+TGG + Chr4:89931795-89931814 MsG0480023798.01.T01:CDS 30.0%
ATTAATCATCTCATGAGGTT+TGG + Chr4:89932771-89932790 MsG0480023798.01.T01:intron 30.0%
ATTATCAGGACTGTATTCTA+TGG + Chr4:89934000-89934019 MsG0480023798.01.T01:intron 30.0%
ATTTCACTCAGTTATGTTGA+TGG + Chr4:89934111-89934130 MsG0480023798.01.T01:CDS 30.0%
CACTAAATTAATGAAGGGAA+GGG - Chr4:89931940-89931959 None:intergenic 30.0%
CAGAACAACAATTCATGAAA+TGG + Chr4:89931781-89931800 MsG0480023798.01.T01:CDS 30.0%
CATGCAATAGCACAAAATAT+AGG + Chr4:89932988-89933007 MsG0480023798.01.T01:CDS 30.0%
CTAAAGTGGGAATTCAAATA+AGG - Chr4:89933631-89933650 None:intergenic 30.0%
CTTCTACAATTTGTCATTGA+TGG - Chr4:89934233-89934252 None:intergenic 30.0%
GTAAGAATCTCATCTATTGA+TGG + Chr4:89933532-89933551 MsG0480023798.01.T01:intron 30.0%
TAAACGTTCAAAGTGTAAGA+AGG - Chr4:89931867-89931886 None:intergenic 30.0%
TCACTAAATTAATGAAGGGA+AGG - Chr4:89931941-89931960 None:intergenic 30.0%
TTATGTAGCTATAGACACAT+TGG + Chr4:89933909-89933928 MsG0480023798.01.T01:intron 30.0%
TTTAGTGAGAGTTGTCATTA+AGG + Chr4:89931953-89931972 MsG0480023798.01.T01:CDS 30.0%
TTTCACTCAGTTATGTTGAT+GGG + Chr4:89934112-89934131 MsG0480023798.01.T01:CDS 30.0%
! AAAACAATTAGTTTGATGGC+AGG - Chr4:89933776-89933795 None:intergenic 30.0%
! AATTTAGAATTAGGTGGCTT+AGG - Chr4:89933872-89933891 None:intergenic 30.0%
! TGAATTGTTGTTCTGATTCT+TGG - Chr4:89931776-89931795 None:intergenic 30.0%
!! TGAAGTTGGTAATAACATAG+GGG + Chr4:89932956-89932975 MsG0480023798.01.T01:intron 30.0%
!! TTGACGGATTATTCTTAGAA+AGG - Chr4:89931620-89931639 None:intergenic 30.0%
AATTAGGGTAATGTACAACC+AGG + Chr4:89933588-89933607 MsG0480023798.01.T01:intron 35.0%
AGCAATTCTACATGTGTGTT+TGG + Chr4:89933649-89933668 MsG0480023798.01.T01:intron 35.0%
AGCAGTTTATTAGAAGACAC+GGG + Chr4:89933033-89933052 MsG0480023798.01.T01:CDS 35.0%
ATATCATCATTCCCAAAGGA+TGG + Chr4:89933160-89933179 MsG0480023798.01.T01:CDS 35.0%
ATTCTCGTTTGTACACTGTA+AGG + Chr4:89933056-89933075 MsG0480023798.01.T01:CDS 35.0%
ATTGTAAGGTTGTGAAGATG+AGG - Chr4:89933242-89933261 None:intergenic 35.0%
CAAAATCCCATTGTAACACA+AGG + Chr4:89931684-89931703 MsG0480023798.01.T01:CDS 35.0%
CACATGTAGAATTGCTAAAG+TGG - Chr4:89933645-89933664 None:intergenic 35.0%
CACTGTATGATCATATTGGT+AGG + Chr4:89932609-89932628 MsG0480023798.01.T01:CDS 35.0%
CACTTTGTGAGTTTGTGTAT+TGG - Chr4:89933696-89933715 None:intergenic 35.0%
CCTCTCATATGAACAAACTA+AGG - Chr4:89932084-89932103 None:intergenic 35.0%
GACAATATCATCATTCCCAA+AGG + Chr4:89933156-89933175 MsG0480023798.01.T01:CDS 35.0%
GACACACTGTATGATCATAT+TGG + Chr4:89932605-89932624 MsG0480023798.01.T01:CDS 35.0%
GAGCAGTTTATTAGAAGACA+CGG + Chr4:89933032-89933051 MsG0480023798.01.T01:CDS 35.0%
GTAACACAAGGTCATACAAA+GGG + Chr4:89931696-89931715 MsG0480023798.01.T01:CDS 35.0%
GTATGACCTTGTGTTACAAT+GGG - Chr4:89931693-89931712 None:intergenic 35.0%
TATGGACAATACAAATGCAC+AGG + Chr4:89934018-89934037 MsG0480023798.01.T01:CDS 35.0%
TGGGAATTCAAATAAGGTAG+TGG - Chr4:89933625-89933644 None:intergenic 35.0%
TGTAACACAAGGTCATACAA+AGG + Chr4:89931695-89931714 MsG0480023798.01.T01:CDS 35.0%
TGTATGACCTTGTGTTACAA+TGG - Chr4:89931694-89931713 None:intergenic 35.0%
TTCTTGGACTTTGGTCATAT+TGG - Chr4:89931760-89931779 None:intergenic 35.0%
TTCTTGGCTGCAAATTCTTA+GGG + Chr4:89932576-89932595 MsG0480023798.01.T01:CDS 35.0%
TTGAAGTACATTCTCAATCC+TGG + Chr4:89933400-89933419 MsG0480023798.01.T01:intron 35.0%
TTGTCATTAAGGTTCATGCA+GGG + Chr4:89931964-89931983 MsG0480023798.01.T01:CDS 35.0%
TTGTGAGTTTGTGTATTGGA+AGG - Chr4:89933692-89933711 None:intergenic 35.0%
TTGTTCTGATTCTTGGACTT+TGG - Chr4:89931769-89931788 None:intergenic 35.0%
TTTCTTGGCTGCAAATTCTT+AGG + Chr4:89932575-89932594 MsG0480023798.01.T01:CDS 35.0%
! AAAAGGGCATGACAAAATGT+GGG - Chr4:89932879-89932898 None:intergenic 35.0%
! AGTTTGTTCATATGAGAGGT+GGG + Chr4:89932085-89932104 MsG0480023798.01.T01:intron 35.0%
! ATGATGGGACTTACATTTCA+CGG - Chr4:89933206-89933225 None:intergenic 35.0%
! CATATGTCACTTGGAAAAGT+TGG - Chr4:89933437-89933456 None:intergenic 35.0%
! TAAAAGGGCATGACAAAATG+TGG - Chr4:89932880-89932899 None:intergenic 35.0%
!! AAATGGGTGAAATTTGTTGG+TGG + Chr4:89931798-89931817 MsG0480023798.01.T01:CDS 35.0%
!! CCTTAGTTTGTTCATATGAG+AGG + Chr4:89932081-89932100 MsG0480023798.01.T01:intron 35.0%
!! GGCTCTGTTGATTTCATATT+TGG + Chr4:89932659-89932678 MsG0480023798.01.T01:CDS 35.0%
!! TAGTTTGTTCATATGAGAGG+TGG + Chr4:89932084-89932103 MsG0480023798.01.T01:intron 35.0%
AAGTGTGTGCATATGTCACT+TGG - Chr4:89933446-89933465 None:intergenic 40.0%
AATGAAGGGAAGGGAATCAA+TGG - Chr4:89931931-89931950 None:intergenic 40.0%
AATGTGGGACAAAAGTGGTT+AGG - Chr4:89932864-89932883 None:intergenic 40.0%
ACTCCTAATCCTGGAACAAA+AGG + Chr4:89932319-89932338 MsG0480023798.01.T01:CDS 40.0%
AGGAGAATGAGAAGAGATGA+TGG - Chr4:89933222-89933241 None:intergenic 40.0%
CCAAAACCTTCTACTGGATT+TGG + Chr4:89931726-89931745 MsG0480023798.01.T01:CDS 40.0%
GAATTTGCAGCCAAGAAACA+TGG - Chr4:89932573-89932592 None:intergenic 40.0%
GACAAAATGTGGGACAAAAG+TGG - Chr4:89932869-89932888 None:intergenic 40.0%
GACATTCCAAATCCAGTAGA+AGG - Chr4:89931735-89931754 None:intergenic 40.0%
GCAAGCACATTAATTGAGCT+TGG - Chr4:89933378-89933397 None:intergenic 40.0%
GGAGAATGAGAAGAGATGAT+GGG - Chr4:89933221-89933240 None:intergenic 40.0%
GTGGTTAGGTTATAGTGATG+TGG - Chr4:89932850-89932869 None:intergenic 40.0%
GTGTATTGGAAGGTAACACA+TGG - Chr4:89933682-89933701 None:intergenic 40.0%
GTTGTCATTAAGGTTCATGC+AGG + Chr4:89931963-89931982 MsG0480023798.01.T01:CDS 40.0%
GTTTGTACACTGTAAGGTCA+CGG + Chr4:89933062-89933081 MsG0480023798.01.T01:CDS 40.0%
GTTTGTTCATATGAGAGGTG+GGG + Chr4:89932086-89932105 MsG0480023798.01.T01:intron 40.0%
TAGGGTCTAAAAAAAGGCCT+TGG + Chr4:89933845-89933864 MsG0480023798.01.T01:intron 40.0%
TCCCAAAGGATGGTACAATT+GGG + Chr4:89933170-89933189 MsG0480023798.01.T01:CDS 40.0%
TCTTGGCTGCAAATTCTTAG+GGG + Chr4:89932577-89932596 MsG0480023798.01.T01:CDS 40.0%
TGTCATTAAGGTTCATGCAG+GGG + Chr4:89931965-89931984 MsG0480023798.01.T01:CDS 40.0%
TGTCTTTGCGTACACTTACA+TGG + Chr4:89933134-89933153 MsG0480023798.01.T01:CDS 40.0%
TTAGGTTATAGTGATGTGGC+TGG - Chr4:89932846-89932865 None:intergenic 40.0%
TTCATAACCATACAAGGAGC+AGG + Chr4:89932256-89932275 MsG0480023798.01.T01:CDS 40.0%
TTCCCAAAGGATGGTACAAT+TGG + Chr4:89933169-89933188 MsG0480023798.01.T01:CDS 40.0%
TTTGTACACTGTAAGGTCAC+GGG + Chr4:89933063-89933082 MsG0480023798.01.T01:CDS 40.0%
! CAATGCTCTCTCTCTTTTTG+AGG + Chr4:89932682-89932701 MsG0480023798.01.T01:CDS 40.0%
! CCAAATCCAGTAGAAGGTTT+TGG - Chr4:89931729-89931748 None:intergenic 40.0%
! TGTCCTTTTGTTCCAGGATT+AGG - Chr4:89932325-89932344 None:intergenic 40.0%
!! AAGTTGGTACTAAAGCAACC+AGG - Chr4:89933421-89933440 None:intergenic 40.0%
!! GAATACAGTCCTGATAATGG+TGG - Chr4:89933998-89934017 None:intergenic 40.0%
AATTAGGTGGCTTAGGACCA+AGG - Chr4:89933865-89933884 None:intergenic 45.0%
ACCCCAATTGTACCATCCTT+TGG - Chr4:89933175-89933194 None:intergenic 45.0%
ACTATACCTTGGAAGGGCTT+GGG + Chr4:89933095-89933114 MsG0480023798.01.T01:CDS 45.0%
ACTGCTCCAATTCCTAAACC+AGG + Chr4:89932500-89932519 MsG0480023798.01.T01:CDS 45.0%
ACTGCTCCTGGTTTAGGAAT+TGG - Chr4:89932509-89932528 None:intergenic 45.0%
ACTGCTCTAACTCCTAATCC+TGG + Chr4:89932310-89932329 MsG0480023798.01.T01:CDS 45.0%
AGCAGTTGGAAAACAAGGAG+TGG + Chr4:89932523-89932542 MsG0480023798.01.T01:CDS 45.0%
ATTCCTAAACCAGGAGCAGT+TGG + Chr4:89932509-89932528 MsG0480023798.01.T01:CDS 45.0%
CAATACAAATGCACAGGACC+AGG + Chr4:89934024-89934043 MsG0480023798.01.T01:CDS 45.0%
CCCAAAGGATGGTACAATTG+GGG + Chr4:89933171-89933190 MsG0480023798.01.T01:CDS 45.0%
CCCCAATTGTACCATCCTTT+GGG - Chr4:89933174-89933193 None:intergenic 45.0%
CTTCGACCAAAACCTTCTAC+TGG + Chr4:89931720-89931739 MsG0480023798.01.T01:CDS 45.0%
GCAAAGACAACCCGAGAAAA+GGG - Chr4:89933123-89933142 None:intergenic 45.0%
GCTGATACTGCCATGTTTCT+TGG + Chr4:89932560-89932579 MsG0480023798.01.T01:CDS 45.0%
GGAACAAAAGGACAGACACT+AGG + Chr4:89932331-89932350 MsG0480023798.01.T01:CDS 45.0%
GGACAGACACTAGGAACTTA+TGG + Chr4:89932340-89932359 MsG0480023798.01.T01:CDS 45.0%
GGGACTTACATTTCACGGTT+GGG - Chr4:89933201-89933220 None:intergenic 45.0%
TGGGACTTACATTTCACGGT+TGG - Chr4:89933202-89933221 None:intergenic 45.0%
TGTGGGTGGAGAATGTGATT+TGG - Chr4:89931572-89931591 None:intergenic 45.0%
TTCATATGAGAGGTGGGGTT+TGG + Chr4:89932091-89932110 MsG0480023798.01.T01:intron 45.0%
TTTCCAACTGCTCCTGGTTT+AGG - Chr4:89932515-89932534 None:intergenic 45.0%
! AGTGTCTGTCCTTTTGTTCC+AGG - Chr4:89932331-89932350 None:intergenic 45.0%
! GTAGTGGTCTCTTTTCTTCC+TGG - Chr4:89933609-89933628 None:intergenic 45.0%
! GTTATGTTGATGGGTCTGAG+TGG + Chr4:89934121-89934140 MsG0480023798.01.T01:CDS 45.0%
!! AGGAGCACTATACCTTGGAA+GGG + Chr4:89933089-89933108 MsG0480023798.01.T01:CDS 45.0%
!! ATAGGAGCACTAACAGCACA+AGG + Chr4:89933006-89933025 MsG0480023798.01.T01:CDS 45.0%
!! TACAGTCCTGATAATGGTGG+TGG - Chr4:89933995-89934014 None:intergenic 45.0%
!! TTAATATATACATAAAAAAT+TGG - Chr4:89934199-89934218 None:intergenic 5.0%
ATCTGCACCTGCTCCTTGTA+TGG - Chr4:89932266-89932285 None:intergenic 50.0%
CACTATACCTTGGAAGGGCT+TGG + Chr4:89933094-89933113 MsG0480023798.01.T01:CDS 50.0%
CCAGGAGCAGTTGGAAAACA+AGG + Chr4:89932518-89932537 MsG0480023798.01.T01:CDS 50.0%
CGCAAAGACAACCCGAGAAA+AGG - Chr4:89933124-89933143 None:intergenic 50.0%
CTATACCTTGGAAGGGCTTG+GGG + Chr4:89933096-89933115 MsG0480023798.01.T01:CDS 50.0%
GAGCACTAACAGCACAAGGA+AGG + Chr4:89933010-89933029 MsG0480023798.01.T01:CDS 50.0%
TTGGGTCCACCACCATTATC+AGG + Chr4:89933986-89934005 MsG0480023798.01.T01:intron 50.0%
! CTGCAAATTCTTAGGGGCAC+AGG + Chr4:89932583-89932602 MsG0480023798.01.T01:CDS 50.0%
!! CAGGAGCACTATACCTTGGA+AGG + Chr4:89933088-89933107 MsG0480023798.01.T01:CDS 50.0%
!! GGATCAGGAGCACTATACCT+TGG + Chr4:89933084-89933103 MsG0480023798.01.T01:CDS 50.0%
!!! CCTTGTTTTCCAACTGCTCC+TGG - Chr4:89932521-89932540 None:intergenic 50.0%
AAGGGAGCTCACTGATGAGG+AGG + Chr4:89934077-89934096 MsG0480023798.01.T01:CDS 55.0%
AGGAGCAAGCTATGCAGGGA+GGG + Chr4:89934044-89934063 MsG0480023798.01.T01:CDS 55.0%
AGGGAGGGTAGCATGGTCAA+GGG + Chr4:89934059-89934078 MsG0480023798.01.T01:CDS 55.0%
CACTGTAAGGTCACGGGATC+AGG + Chr4:89933069-89933088 MsG0480023798.01.T01:CDS 55.0%
GACCAGGAGCAAGCTATGCA+GGG + Chr4:89934040-89934059 MsG0480023798.01.T01:CDS 55.0%
GTCAAGGGAGCTCACTGATG+AGG + Chr4:89934074-89934093 MsG0480023798.01.T01:CDS 55.0%
CAGGAGCAAGCTATGCAGGG+AGG + Chr4:89934043-89934062 MsG0480023798.01.T01:CDS 60.0%
CAGGGAGGGTAGCATGGTCA+AGG + Chr4:89934058-89934077 MsG0480023798.01.T01:CDS 60.0%
GCTATGCAGGGAGGGTAGCA+TGG + Chr4:89934052-89934071 MsG0480023798.01.T01:CDS 60.0%
GGACCAGGAGCAAGCTATGC+AGG + Chr4:89934039-89934058 MsG0480023798.01.T01:CDS 60.0%
! GGCTTGGGGTCCCTTTTCTC+GGG + Chr4:89933110-89933129 MsG0480023798.01.T01:CDS 60.0%
! GGGCTTGGGGTCCCTTTTCT+CGG + Chr4:89933109-89933128 MsG0480023798.01.T01:CDS 60.0%
!! CTCCCTGCATAGCTTGCTCC+TGG - Chr4:89934045-89934064 None:intergenic 60.0%
AGGGACCCCAAGCCCTTCCA+AGG - Chr4:89933104-89933123 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 89931565 89934263 89931565 ID=MsG0480023798.01;Name=MsG0480023798.01
Chr4 mRNA 89931565 89934263 89931565 ID=MsG0480023798.01.T01;Parent=MsG0480023798.01;Name=MsG0480023798.01.T01;_AED=0.50;_eAED=0.50;_QI=77|1|1|1|1|1|5|102|381
Chr4 exon 89931565 89931994 89931565 ID=MsG0480023798.01.T01:exon:25384;Parent=MsG0480023798.01.T01
Chr4 exon 89932225 89932420 89932225 ID=MsG0480023798.01.T01:exon:25385;Parent=MsG0480023798.01.T01
Chr4 exon 89932497 89932703 89932497 ID=MsG0480023798.01.T01:exon:25386;Parent=MsG0480023798.01.T01
Chr4 exon 89932976 89933211 89932976 ID=MsG0480023798.01.T01:exon:25387;Parent=MsG0480023798.01.T01
Chr4 exon 89934008 89934263 89934008 ID=MsG0480023798.01.T01:exon:25388;Parent=MsG0480023798.01.T01
Chr4 five_prime_UTR 89931565 89931641 89931565 ID=MsG0480023798.01.T01:five_prime_utr;Parent=MsG0480023798.01.T01
Chr4 CDS 89931642 89931994 89931642 ID=MsG0480023798.01.T01:cds;Parent=MsG0480023798.01.T01
Chr4 CDS 89932225 89932420 89932225 ID=MsG0480023798.01.T01:cds;Parent=MsG0480023798.01.T01
Chr4 CDS 89932497 89932703 89932497 ID=MsG0480023798.01.T01:cds;Parent=MsG0480023798.01.T01
Chr4 CDS 89932976 89933211 89932976 ID=MsG0480023798.01.T01:cds;Parent=MsG0480023798.01.T01
Chr4 CDS 89934008 89934161 89934008 ID=MsG0480023798.01.T01:cds;Parent=MsG0480023798.01.T01
Chr4 three_prime_UTR 89934162 89934263 89934162 ID=MsG0480023798.01.T01:three_prime_utr;Parent=MsG0480023798.01.T01
Gene Sequence

>MsG0480023798.01.T01

ATGAATTTCATTTTCTATGTTTTATTACTTCTTCTTGTTCTACAAAATCCCATTGTAACACAAGGTCATACAAAGGGACTTCGACCAAAACCTTCTACTGGATTTGGAATGTCTACCAATATGACCAAAGTCCAAGAATCAGAACAACAATTCATGAAATGGGTGAAATTTGTTGGTGGTCTCAAACATACTGTCTTTAGAACAGCCAAAAATAAGCTTTTTCCTTCTTACACTTTGAACGTTTATAAACATTCAAGTAAAGGAGGATTTTCATCAATTCAAGCAGCCATTGATTCCCTTCCCTTCATTAATTTAGTGAGAGTTGTCATTAAGGTTCATGCAGGGGTTTACACAGAGAAAGTTAGCATTCCTGCATTAAAATCATTCATAACCATACAAGGAGCAGGTGCAGATAAAACAATTGTTCAATGGGGTGACACTGCTCTAACTCCTAATCCTGGAACAAAAGGACAGACACTAGGAACTTATGGTTCTGCAACTTTTGCAGTGAATTCACCTTATTTCATTGCTAAGAACATCACATTCAAAAATACTGCTCCAATTCCTAAACCAGGAGCAGTTGGAAAACAAGGAGTGGCATTAAGAATTTCAGCTGATACTGCCATGTTTCTTGGCTGCAAATTCTTAGGGGCACAGGACACACTGTATGATCATATTGGTAGGCACTATTACAAAGATTGTTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGCTCTCTCTCTTTTTGAGGGGTGTCACGTGCATGCAATAGCACAAAATATAGGAGCACTAACAGCACAAGGAAGGAGCAGTTTATTAGAAGACACGGGATTCTCGTTTGTACACTGTAAGGTCACGGGATCAGGAGCACTATACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGGGTTGTCTTTGCGTACACTTACATGGACAATATCATCATTCCCAAAGGATGGTACAATTGGGGTGATCCCAACCGTGAAATGACTGTATTCTATGGACAATACAAATGCACAGGACCAGGAGCAAGCTATGCAGGGAGGGTAGCATGGTCAAGGGAGCTCACTGATGAGGAGGCTAAACCATTTATTTCACTCAGTTATGTTGATGGGTCTGAGTGGATTAATTCTTTCTTTTGA
Protein sequence

>MsG0480023798.01.T01

MNFIFYVLLLLLVLQNPIVTQGHTKGLRPKPSTGFGMSTNMTKVQESEQQFMKWVKFVGGLKHTVFRTAKNKLFPSYTLNVYKHSSKGGFSSIQAAIDSLPFINLVRVVIKVHAGVYTEKVSIPALKSFITIQGAGADKTIVQWGDTALTPNPGTKGQTLGTYGSATFAVNSPYFIAKNITFKNTAPIPKPGAVGKQGVALRISADTAMFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNIGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVAWSRELTDEEAKPFISLSYVDGSEWINSFF*