Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023804.01.T01 | XP_003630712.1 | 87.781 | 311 | 9 | 1 | 1 | 282 | 11 | 321 | 0 | 517 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023804.01.T01 | Q9SD22 | 29.06 | 351 | 150 | 8 | 18 | 282 | 68 | 405 | 2.24E-38 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023804.01.T01 | G7L7F5 | 87.781 | 311 | 9 | 1 | 1 | 282 | 11 | 321 | 0.0 | 517 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000111.01 | MsG0480023804.01 | 0.806418 | 8.304551e-50 | 4.505130e-47 |
| MsG0480023804.01 | MsG0780039878.01 | 0.806372 | 8.492732e-50 | 4.601851e-47 |
| MsG0380016703.01 | MsG0480023804.01 | 0.801655 | 8.128368e-49 | 3.903004e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023804.01.T01 | MTR_8g102510 | 87.781 | 311 | 9 | 1 | 1 | 282 | 11 | 321 | 0.0 | 517 |
| MsG0480023804.01.T01 | MTR_8g102510 | 87.781 | 311 | 9 | 1 | 1 | 282 | 11 | 321 | 0.0 | 516 |
| MsG0480023804.01.T01 | MTR_8g102510 | 86.268 | 284 | 10 | 1 | 1 | 255 | 11 | 294 | 3.76e-166 | 462 |
| MsG0480023804.01.T01 | MTR_6g088680 | 66.032 | 315 | 73 | 5 | 1 | 282 | 9 | 322 | 1.85e-144 | 410 |
| MsG0480023804.01.T01 | MTR_6g088680 | 63.889 | 288 | 70 | 5 | 1 | 255 | 9 | 295 | 4.47e-126 | 361 |
| MsG0480023804.01.T01 | MTR_6g088685 | 39.648 | 227 | 87 | 6 | 9 | 203 | 9 | 217 | 4.11e-41 | 142 |
| MsG0480023804.01.T01 | MTR_4g073530 | 31.494 | 308 | 146 | 9 | 25 | 282 | 57 | 349 | 6.00e-37 | 134 |
| MsG0480023804.01.T01 | MTR_4g073530 | 31.494 | 308 | 146 | 9 | 25 | 282 | 54 | 346 | 1.81e-36 | 134 |
| MsG0480023804.01.T01 | MTR_5g022450 | 28.818 | 347 | 151 | 7 | 18 | 282 | 62 | 394 | 3.72e-35 | 132 |
| MsG0480023804.01.T01 | MTR_8g075350 | 28.460 | 383 | 149 | 9 | 7 | 282 | 51 | 415 | 6.03e-34 | 129 |
| MsG0480023804.01.T01 | MTR_5g022450 | 27.666 | 347 | 149 | 8 | 18 | 282 | 62 | 388 | 1.11e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023804.01.T01 | AT4G15450 | 53.526 | 312 | 92 | 6 | 17 | 282 | 27 | 331 | 4.23e-105 | 311 |
| MsG0480023804.01.T01 | AT3G21600 | 54.333 | 300 | 96 | 6 | 20 | 282 | 29 | 324 | 8.96e-104 | 306 |
| MsG0480023804.01.T01 | AT3G21600 | 54.333 | 300 | 96 | 6 | 20 | 282 | 29 | 324 | 1.45e-103 | 306 |
| MsG0480023804.01.T01 | AT4G15450 | 51.923 | 312 | 91 | 7 | 17 | 282 | 27 | 325 | 7.69e-99 | 295 |
| MsG0480023804.01.T01 | AT3G21600 | 47.685 | 216 | 72 | 6 | 20 | 198 | 29 | 240 | 1.82e-56 | 182 |
| MsG0480023804.01.T01 | AT3G51250 | 29.060 | 351 | 150 | 8 | 18 | 282 | 68 | 405 | 2.29e-39 | 143 |
| MsG0480023804.01.T01 | AT4G35985 | 30.058 | 346 | 158 | 8 | 8 | 282 | 52 | 384 | 3.02e-36 | 133 |
| MsG0480023804.01.T01 | AT4G35985 | 30.058 | 346 | 158 | 8 | 8 | 282 | 52 | 384 | 9.12e-36 | 133 |
| MsG0480023804.01.T01 | AT3G51250 | 28.704 | 324 | 132 | 8 | 18 | 255 | 68 | 378 | 5.61e-33 | 124 |
| MsG0480023804.01.T01 | AT2G17840 | 28.493 | 365 | 152 | 11 | 3 | 282 | 54 | 394 | 1.24e-31 | 121 |
| MsG0480023804.01.T01 | AT2G17840 | 28.493 | 365 | 152 | 11 | 3 | 282 | 54 | 394 | 2.40e-31 | 121 |
| MsG0480023804.01.T01 | AT3G21590 | 46.405 | 153 | 79 | 1 | 130 | 282 | 69 | 218 | 3.09e-29 | 110 |
| MsG0480023804.01.T01 | AT3G21590 | 43.411 | 129 | 70 | 1 | 130 | 258 | 69 | 194 | 8.22e-20 | 85.5 |
| MsG0480023804.01.T01 | AT3G21590 | 43.307 | 127 | 69 | 1 | 130 | 256 | 69 | 192 | 5.58e-19 | 83.6 |
| MsG0480023804.01.T01 | AT4G35985 | 27.434 | 226 | 93 | 6 | 8 | 162 | 52 | 277 | 2.17e-14 | 72.4 |
Find 64 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCATCTGCATGACTATTT+AGG | 0.176109 | 4:-90025852 | None:intergenic |
| AACTTCTTGCCTAAGGTTCT+TGG | 0.255800 | 4:-90025073 | None:intergenic |
| ATCCTTAGGAATGCCTTTCC+TGG | 0.310349 | 4:-90026176 | None:intergenic |
| GTCTTCAATAGTACTACTTC+TGG | 0.322343 | 4:-90025040 | None:intergenic |
| TTAAGCAAATCTTTGCTTAG+TGG | 0.324336 | 4:+90026104 | MsG0480023804.01.T01:CDS |
| TTTCTATCAAAGCTTATTGC+AGG | 0.332190 | 4:+90025482 | MsG0480023804.01.T01:CDS |
| TAGGAATGCCTTTCCTGGTT+GGG | 0.339467 | 4:-90026171 | None:intergenic |
| TTATGGAAGTTTGAGTTTGC+TGG | 0.358493 | 4:+90025355 | MsG0480023804.01.T01:CDS |
| ATTGATCTTGTTCTTCTTCG+AGG | 0.368375 | 4:-90025923 | None:intergenic |
| ACTTCTTGCCTAAGGTTCTT+GGG | 0.373704 | 4:-90025072 | None:intergenic |
| CATCTAGAATGGTCTCTAAC+AGG | 0.397131 | 4:+90026422 | MsG0480023804.01.T01:CDS |
| CTAAACAAATAAAACCTTGT+TGG | 0.397657 | 4:-90025555 | None:intergenic |
| GCTGCCTGGAGAGGTGTTGT+TGG | 0.402177 | 4:+90026199 | MsG0480023804.01.T01:CDS |
| CCTCTCCAGGCAGCATCCTT+AGG | 0.416321 | 4:-90026190 | None:intergenic |
| CGGGCAACGAAAACAGATAA+TGG | 0.418561 | 4:-90025283 | None:intergenic |
| ACTAGCTCAAGGCCATTTCA+TGG | 0.421152 | 4:+90025152 | MsG0480023804.01.T01:CDS |
| GGTATGGAGGTTTCCATTGG+TGG | 0.421306 | 4:-90025018 | None:intergenic |
| AGTGGTGTTGGCATAGTTAG+TGG | 0.423570 | 4:+90026122 | MsG0480023804.01.T01:CDS |
| AGGATGCAAAGTTCATTTGA+TGG | 0.433365 | 4:+90025110 | MsG0480023804.01.T01:CDS |
| TGGAACAGTGATAGGCCCTT+TGG | 0.434912 | 4:+90026142 | MsG0480023804.01.T01:CDS |
| CTGGGTATGGAGGTTTCCAT+TGG | 0.435087 | 4:-90025021 | None:intergenic |
| CATTCTAGATGCAGCTTTCG+AGG | 0.450865 | 4:-90026410 | None:intergenic |
| AAATCTTTGCTTAGTGGTGT+TGG | 0.456818 | 4:+90026110 | MsG0480023804.01.T01:CDS |
| ATAGTTAGTGGAACAGTGAT+AGG | 0.465529 | 4:+90026134 | MsG0480023804.01.T01:CDS |
| TCCATAACAATCTTCTGAAA+AGG | 0.465570 | 4:-90025339 | None:intergenic |
| AAAGTTCATTTGATGGATGA+AGG | 0.470206 | 4:+90025117 | MsG0480023804.01.T01:CDS |
| AAGCTTATTGCAGGAGGGAC+TGG | 0.473481 | 4:+90025491 | MsG0480023804.01.T01:CDS |
| GTATCAGAACTTCTTGCCTA+AGG | 0.476536 | 4:-90025080 | None:intergenic |
| TTAGGAATGCCTTTCCTGGT+TGG | 0.492672 | 4:-90026172 | None:intergenic |
| GAATGGTCTCTAACAGGTAA+AGG | 0.492673 | 4:+90026428 | MsG0480023804.01.T01:CDS |
| GAAGCCAACAACACCTCTCC+AGG | 0.495160 | 4:-90026203 | None:intergenic |
| TCTTCAATAGTACTACTTCT+GGG | 0.497590 | 4:-90025039 | None:intergenic |
| AAGAGGCTCACCATCTTTCA+CGG | 0.501387 | 4:-90025303 | None:intergenic |
| CTCGAAAGCTGCATCTAGAA+TGG | 0.505377 | 4:+90026411 | MsG0480023804.01.T01:CDS |
| ATGCAGGACCCAAGAACCTT+AGG | 0.511103 | 4:+90025064 | MsG0480023804.01.T01:CDS |
| ATCAAATGAACTTTGCATCC+TGG | 0.511507 | 4:-90025108 | None:intergenic |
| TTTACTTACTGACTGCATCA+AGG | 0.515962 | 4:-90026226 | None:intergenic |
| GGTTAAATCCCAACCAGGAA+AGG | 0.518740 | 4:+90026163 | MsG0480023804.01.T01:CDS |
| AATAGTACTACTTCTGGGTA+TGG | 0.522311 | 4:-90025034 | None:intergenic |
| CCTGGTTGGGATTTAACCAA+AGG | 0.523788 | 4:-90026158 | None:intergenic |
| TTGGAAGGAGTTTGCTCCGA+GGG | 0.533309 | 4:+90025442 | MsG0480023804.01.T01:CDS |
| TTACTTACTGACTGCATCAA+GGG | 0.538649 | 4:-90026225 | None:intergenic |
| CTATCAAAGCTTATTGCAGG+AGG | 0.540727 | 4:+90025485 | MsG0480023804.01.T01:CDS |
| CTGGTTGGGATTTAACCAAA+GGG | 0.546559 | 4:-90026157 | None:intergenic |
| GCATTCCTAAGGATGCTGCC+TGG | 0.549502 | 4:+90026185 | MsG0480023804.01.T01:CDS |
| CCTAAGGATGCTGCCTGGAG+AGG | 0.558020 | 4:+90026190 | MsG0480023804.01.T01:CDS |
| TGATTGTAATCTTCAACCCT+CGG | 0.567569 | 4:-90025458 | None:intergenic |
| AGTACTATTGAAGACTATGC+AGG | 0.580566 | 4:+90025048 | MsG0480023804.01.T01:CDS |
| TATCAAAGCTTATTGCAGGA+GGG | 0.582026 | 4:+90025486 | MsG0480023804.01.T01:CDS |
| AGAGGCTCACCATCTTTCAC+GGG | 0.590880 | 4:-90025302 | None:intergenic |
| AACCAGGAAAGGCATTCCTA+AGG | 0.592978 | 4:+90026174 | MsG0480023804.01.T01:CDS |
| GATGGTGAGCCTCTTAGCTA+CGG | 0.597136 | 4:+90025311 | MsG0480023804.01.T01:CDS |
| AGTACTACTTCTGGGTATGG+AGG | 0.603110 | 4:-90025031 | None:intergenic |
| TTCCACAGTTATGCCACCAA+TGG | 0.606555 | 4:+90025005 | None:intergenic |
| CCTTTGGTTAAATCCCAACC+AGG | 0.610932 | 4:+90026158 | MsG0480023804.01.T01:CDS |
| AGGGACTGGTCAGATTGTGA+AGG | 0.612855 | 4:+90025505 | MsG0480023804.01.T01:CDS |
| CAGCAATGCTTACACCAACA+AGG | 0.615781 | 4:+90025541 | MsG0480023804.01.T01:CDS |
| AAGGTCAAGCCGTAGCTAAG+AGG | 0.626212 | 4:-90025320 | None:intergenic |
| GGGACTGGTCAGATTGTGAA+GGG | 0.629455 | 4:+90025506 | MsG0480023804.01.T01:CDS |
| AGTAAGAGCAACAAGAGTGT+CGG | 0.655465 | 4:+90025898 | MsG0480023804.01.T01:CDS |
| AGAGCATCTAGCTTCACCAC+AGG | 0.663366 | 4:-90025260 | None:intergenic |
| TCTAGATGCAGCTTTCGAGG+TGG | 0.663909 | 4:-90026407 | None:intergenic |
| GAAGTTCTGATACAAATACC+AGG | 0.674691 | 4:+90025090 | MsG0480023804.01.T01:CDS |
| ATTGGAAGGAGTTTGCTCCG+AGG | 0.684090 | 4:+90025441 | MsG0480023804.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTAAATGATACTTTTTTCA+TGG | - | Chr4:90025766-90025785 | None:intergenic | 20.0% |
| ! | AGATCAATAAAAACCTCAAA+CGG | + | Chr4:90025938-90025957 | MsG0480023804.01.T01:CDS | 25.0% |
| ! | ATTTCATGGTAATCAAAACT+TGG | + | Chr4:90025166-90025185 | MsG0480023804.01.T01:intron | 25.0% |
| ! | CTAAACAAATAAAACCTTGT+TGG | - | Chr4:90025558-90025577 | None:intergenic | 25.0% |
| ! | GTAACAAAAATGATCTTGAT+TGG | + | Chr4:90025423-90025442 | MsG0480023804.01.T01:CDS | 25.0% |
| ! | TAATTTATGTAGTGTACAAG+TGG | + | Chr4:90026002-90026021 | MsG0480023804.01.T01:intron | 25.0% |
| !! | ACAGTAAACTAAGAACTTTT+TGG | + | Chr4:90025789-90025808 | MsG0480023804.01.T01:intron | 25.0% |
| !! | CAGTAAACTAAGAACTTTTT+GGG | + | Chr4:90025790-90025809 | MsG0480023804.01.T01:intron | 25.0% |
| !!! | AAGGTTTTATTTGTTTAGCA+AGG | + | Chr4:90025560-90025579 | MsG0480023804.01.T01:intron | 25.0% |
| !!! | AAGTTTTGATTACCATGAAA+TGG | - | Chr4:90025167-90025186 | None:intergenic | 25.0% |
| !!! | TGTCATAAAGTGTTTTTACT+TGG | - | Chr4:90026258-90026277 | None:intergenic | 25.0% |
| AAAAATCACCAGGTACAAAA+AGG | + | Chr4:90025817-90025836 | MsG0480023804.01.T01:intron | 30.0% | |
| AACAACAACATTGAGCATAA+AGG | - | Chr4:90026285-90026304 | None:intergenic | 30.0% | |
| ACAACAACATTGAGCATAAA+GGG | - | Chr4:90026284-90026303 | None:intergenic | 30.0% | |
| CAAAAATGATCTTGATTGGA+AGG | + | Chr4:90025427-90025446 | MsG0480023804.01.T01:CDS | 30.0% | |
| CTTGCTACAGTTATAAAAGT+AGG | + | Chr4:90025203-90025222 | MsG0480023804.01.T01:intron | 30.0% | |
| TCTTCAATAGTACTACTTCT+GGG | - | Chr4:90025042-90025061 | None:intergenic | 30.0% | |
| TTAAGCAAATCTTTGCTTAG+TGG | + | Chr4:90026104-90026123 | MsG0480023804.01.T01:CDS | 30.0% | |
| TTTCTATCAAAGCTTATTGC+AGG | + | Chr4:90025482-90025501 | MsG0480023804.01.T01:CDS | 30.0% | |
| ! | AAAGTTCATTTGATGGATGA+AGG | + | Chr4:90025117-90025136 | MsG0480023804.01.T01:CDS | 30.0% |
| ! | ACCTTTTCAGAAGATTGTTA+TGG | + | Chr4:90025338-90025357 | MsG0480023804.01.T01:CDS | 30.0% |
| ! | TCCATAACAATCTTCTGAAA+AGG | - | Chr4:90025342-90025361 | None:intergenic | 30.0% |
| !! | AAACTAAGAACTTTTTGGGA+TGG | + | Chr4:90025794-90025813 | MsG0480023804.01.T01:intron | 30.0% |
| !! | TCATTTTTGTATACCGTTTG+AGG | - | Chr4:90025954-90025973 | None:intergenic | 30.0% |
| AAATCTTTGCTTAGTGGTGT+TGG | + | Chr4:90026110-90026129 | MsG0480023804.01.T01:CDS | 35.0% | |
| AAGTAGGAGAAGATCTTCAA+TGG | + | Chr4:90025219-90025238 | MsG0480023804.01.T01:intron | 35.0% | |
| AATAGTACTACTTCTGGGTA+TGG | - | Chr4:90025037-90025056 | None:intergenic | 35.0% | |
| ACAGGCTCATCTTTAGTTAA+AGG | - | Chr4:90025245-90025264 | None:intergenic | 35.0% | |
| AGGATGCAAAGTTCATTTGA+TGG | + | Chr4:90025110-90025129 | MsG0480023804.01.T01:CDS | 35.0% | |
| AGTACTATTGAAGACTATGC+AGG | + | Chr4:90025048-90025067 | MsG0480023804.01.T01:CDS | 35.0% | |
| AGTCATGCAGATGAGAAAAA+TGG | + | Chr4:90025859-90025878 | MsG0480023804.01.T01:CDS | 35.0% | |
| ATAGTTAGTGGAACAGTGAT+AGG | + | Chr4:90026134-90026153 | MsG0480023804.01.T01:CDS | 35.0% | |
| ATCAAATGAACTTTGCATCC+TGG | - | Chr4:90025111-90025130 | None:intergenic | 35.0% | |
| ATTGATCTTGTTCTTCTTCG+AGG | - | Chr4:90025926-90025945 | None:intergenic | 35.0% | |
| GTCTTCAATAGTACTACTTC+TGG | - | Chr4:90025043-90025062 | None:intergenic | 35.0% | |
| TATCAAAGCTTATTGCAGGA+GGG | + | Chr4:90025486-90025505 | MsG0480023804.01.T01:CDS | 35.0% | |
| TCATGGTAATCAAAACTTGG+AGG | + | Chr4:90025169-90025188 | MsG0480023804.01.T01:intron | 35.0% | |
| TCTCATCTGCATGACTATTT+AGG | - | Chr4:90025855-90025874 | None:intergenic | 35.0% | |
| TGATTGTAATCTTCAACCCT+CGG | - | Chr4:90025461-90025480 | None:intergenic | 35.0% | |
| TGTATGCATTTCGTAGACTT+GGG | - | Chr4:90025680-90025699 | None:intergenic | 35.0% | |
| TGTATTTGCAATGTAGTGTG+AGG | + | Chr4:90026057-90026076 | MsG0480023804.01.T01:intron | 35.0% | |
| TTGTATGCATTTCGTAGACT+TGG | - | Chr4:90025681-90025700 | None:intergenic | 35.0% | |
| TTTAACTAAAGATGAGCCTG+TGG | + | Chr4:90025244-90025263 | MsG0480023804.01.T01:intron | 35.0% | |
| ! | GAAGTTCTGATACAAATACC+AGG | + | Chr4:90025090-90025109 | MsG0480023804.01.T01:CDS | 35.0% |
| ! | GCTTAACTTTTCTGTCATCT+TGG | - | Chr4:90026090-90026109 | None:intergenic | 35.0% |
| ! | TTACTTACTGACTGCATCAA+GGG | - | Chr4:90026228-90026247 | None:intergenic | 35.0% |
| ! | TTATGGAAGTTTGAGTTTGC+TGG | + | Chr4:90025355-90025374 | MsG0480023804.01.T01:CDS | 35.0% |
| ! | TTTACTTACTGACTGCATCA+AGG | - | Chr4:90026229-90026248 | None:intergenic | 35.0% |
| AACTTCTTGCCTAAGGTTCT+TGG | - | Chr4:90025076-90025095 | None:intergenic | 40.0% | |
| AATCACCAGGTACAAAAAGG+AGG | + | Chr4:90025820-90025839 | MsG0480023804.01.T01:intron | 40.0% | |
| ACTTCTTGCCTAAGGTTCTT+GGG | - | Chr4:90025075-90025094 | None:intergenic | 40.0% | |
| CTATCAAAGCTTATTGCAGG+AGG | + | Chr4:90025485-90025504 | MsG0480023804.01.T01:CDS | 40.0% | |
| CTGGTTGGGATTTAACCAAA+GGG | - | Chr4:90026160-90026179 | None:intergenic | 40.0% | |
| GTATCAGAACTTCTTGCCTA+AGG | - | Chr4:90025083-90025102 | None:intergenic | 40.0% | |
| TGTAGTGTACAAGTGGATGA+TGG | + | Chr4:90026009-90026028 | MsG0480023804.01.T01:intron | 40.0% | |
| ! | AGATGAGAAAAATGGTGCTG+TGG | + | Chr4:90025867-90025886 | MsG0480023804.01.T01:CDS | 40.0% |
| ! | AGTAAGAGCAACAAGAGTGT+CGG | + | Chr4:90025898-90025917 | MsG0480023804.01.T01:CDS | 40.0% |
| ! | CATCTAGAATGGTCTCTAAC+AGG | + | Chr4:90026422-90026441 | MsG0480023804.01.T01:CDS | 40.0% |
| ! | GAAGCTTTTGAACTAGCTCA+AGG | + | Chr4:90025141-90025160 | MsG0480023804.01.T01:CDS | 40.0% |
| ! | TTTCTCCTCCTTTTTGTACC+TGG | - | Chr4:90025828-90025847 | None:intergenic | 40.0% |
| ! | TTTGGGATGGAAAAATCACC+AGG | + | Chr4:90025807-90025826 | MsG0480023804.01.T01:intron | 40.0% |
| !!! | AAAGAGCACTCTTGCTTTTC+TGG | + | Chr4:90025389-90025408 | MsG0480023804.01.T01:CDS | 40.0% |
| AAGAGGCTCACCATCTTTCA+CGG | - | Chr4:90025306-90025325 | None:intergenic | 45.0% | |
| ACTAGCTCAAGGCCATTTCA+TGG | + | Chr4:90025152-90025171 | MsG0480023804.01.T01:CDS | 45.0% | |
| AGTACTACTTCTGGGTATGG+AGG | - | Chr4:90025034-90025053 | None:intergenic | 45.0% | |
| ATCCTTAGGAATGCCTTTCC+TGG | - | Chr4:90026179-90026198 | None:intergenic | 45.0% | |
| CAGCAATGCTTACACCAACA+AGG | + | Chr4:90025541-90025560 | MsG0480023804.01.T01:CDS | 45.0% | |
| CATTCTAGATGCAGCTTTCG+AGG | - | Chr4:90026413-90026432 | None:intergenic | 45.0% | |
| CCTGGTTGGGATTTAACCAA+AGG | - | Chr4:90026161-90026180 | None:intergenic | 45.0% | |
| CCTTTGGTTAAATCCCAACC+AGG | + | Chr4:90026158-90026177 | MsG0480023804.01.T01:CDS | 45.0% | |
| CGGGCAACGAAAACAGATAA+TGG | - | Chr4:90025286-90025305 | None:intergenic | 45.0% | |
| CTCGAAAGCTGCATCTAGAA+TGG | + | Chr4:90026411-90026430 | MsG0480023804.01.T01:CDS | 45.0% | |
| GGTTAAATCCCAACCAGGAA+AGG | + | Chr4:90026163-90026182 | MsG0480023804.01.T01:CDS | 45.0% | |
| TAGGAATGCCTTTCCTGGTT+GGG | - | Chr4:90026174-90026193 | None:intergenic | 45.0% | |
| TTAGGAATGCCTTTCCTGGT+TGG | - | Chr4:90026175-90026194 | None:intergenic | 45.0% | |
| ! | ACAATGAGAGTGTGTGACAC+TGG | + | Chr4:90025697-90025716 | MsG0480023804.01.T01:intron | 45.0% |
| ! | TTTTCGTTGCCCGTGAAAGA+TGG | + | Chr4:90025293-90025312 | MsG0480023804.01.T01:CDS | 45.0% |
| !! | AACCAGGAAAGGCATTCCTA+AGG | + | Chr4:90026174-90026193 | MsG0480023804.01.T01:CDS | 45.0% |
| !! | AGAAAAATGGTGCTGTGGTC+AGG | + | Chr4:90025872-90025891 | MsG0480023804.01.T01:CDS | 45.0% |
| !! | AGTGGTGTTGGCATAGTTAG+TGG | + | Chr4:90026122-90026141 | MsG0480023804.01.T01:CDS | 45.0% |
| !! | GAAAAATGGTGCTGTGGTCA+GGG | + | Chr4:90025873-90025892 | MsG0480023804.01.T01:CDS | 45.0% |
| AAGCTTATTGCAGGAGGGAC+TGG | + | Chr4:90025491-90025510 | MsG0480023804.01.T01:CDS | 50.0% | |
| AAGGTCAAGCCGTAGCTAAG+AGG | - | Chr4:90025323-90025342 | None:intergenic | 50.0% | |
| AGAGGCTCACCATCTTTCAC+GGG | - | Chr4:90025305-90025324 | None:intergenic | 50.0% | |
| ATGCAGGACCCAAGAACCTT+AGG | + | Chr4:90025064-90025083 | MsG0480023804.01.T01:CDS | 50.0% | |
| CTGGGTATGGAGGTTTCCAT+TGG | - | Chr4:90025024-90025043 | None:intergenic | 50.0% | |
| GATGGTGAGCCTCTTAGCTA+CGG | + | Chr4:90025311-90025330 | MsG0480023804.01.T01:CDS | 50.0% | |
| GGTATGGAGGTTTCCATTGG+TGG | - | Chr4:90025021-90025040 | None:intergenic | 50.0% | |
| TCTAGATGCAGCTTTCGAGG+TGG | - | Chr4:90026410-90026429 | None:intergenic | 50.0% | |
| TGGAACAGTGATAGGCCCTT+TGG | + | Chr4:90026142-90026161 | MsG0480023804.01.T01:CDS | 50.0% | |
| ! | AGAGCATCTAGCTTCACCAC+AGG | - | Chr4:90025263-90025282 | None:intergenic | 50.0% |
| ! | ATTGGAAGGAGTTTGCTCCG+AGG | + | Chr4:90025441-90025460 | MsG0480023804.01.T01:CDS | 50.0% |
| ! | TTGGAAGGAGTTTGCTCCGA+GGG | + | Chr4:90025442-90025461 | MsG0480023804.01.T01:CDS | 50.0% |
| !! | AGGGACTGGTCAGATTGTGA+AGG | + | Chr4:90025505-90025524 | MsG0480023804.01.T01:CDS | 50.0% |
| !! | GGGACTGGTCAGATTGTGAA+GGG | + | Chr4:90025506-90025525 | MsG0480023804.01.T01:CDS | 50.0% |
| GAAGCCAACAACACCTCTCC+AGG | - | Chr4:90026206-90026225 | None:intergenic | 55.0% | |
| GCATTCCTAAGGATGCTGCC+TGG | + | Chr4:90026185-90026204 | MsG0480023804.01.T01:CDS | 55.0% | |
| CCTAAGGATGCTGCCTGGAG+AGG | + | Chr4:90026190-90026209 | MsG0480023804.01.T01:CDS | 60.0% | |
| CCTCTCCAGGCAGCATCCTT+AGG | - | Chr4:90026193-90026212 | None:intergenic | 60.0% | |
| !! | GCTGCCTGGAGAGGTGTTGT+TGG | + | Chr4:90026199-90026218 | MsG0480023804.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 90025015 | 90026447 | 90025015 | ID=MsG0480023804.01;Name=MsG0480023804.01 |
| Chr4 | mRNA | 90025015 | 90026447 | 90025015 | ID=MsG0480023804.01.T01;Parent=MsG0480023804.01;Name=MsG0480023804.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0.75|0.6|5|0|282 |
| Chr4 | exon | 90025015 | 90025173 | 90025015 | ID=MsG0480023804.01.T01:exon:6654;Parent=MsG0480023804.01.T01 |
| Chr4 | exon | 90025260 | 90025562 | 90025260 | ID=MsG0480023804.01.T01:exon:6655;Parent=MsG0480023804.01.T01 |
| Chr4 | exon | 90025829 | 90025959 | 90025829 | ID=MsG0480023804.01.T01:exon:6656;Parent=MsG0480023804.01.T01 |
| Chr4 | exon | 90026073 | 90026239 | 90026073 | ID=MsG0480023804.01.T01:exon:6657;Parent=MsG0480023804.01.T01 |
| Chr4 | exon | 90026359 | 90026447 | 90026359 | ID=MsG0480023804.01.T01:exon:6658;Parent=MsG0480023804.01.T01 |
| Chr4 | CDS | 90025015 | 90025173 | 90025015 | ID=MsG0480023804.01.T01:cds;Parent=MsG0480023804.01.T01 |
| Chr4 | CDS | 90025260 | 90025562 | 90025260 | ID=MsG0480023804.01.T01:cds;Parent=MsG0480023804.01.T01 |
| Chr4 | CDS | 90025829 | 90025959 | 90025829 | ID=MsG0480023804.01.T01:cds;Parent=MsG0480023804.01.T01 |
| Chr4 | CDS | 90026073 | 90026239 | 90026073 | ID=MsG0480023804.01.T01:cds;Parent=MsG0480023804.01.T01 |
| Chr4 | CDS | 90026359 | 90026447 | 90026359 | ID=MsG0480023804.01.T01:cds;Parent=MsG0480023804.01.T01 |
| Gene Sequence |
| Protein sequence |
