AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000111.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000111.01.T02 MTR_1g023180 98.947 95 1 0 1 95 1 95 1.85e-62 194
MsG0180000111.01.T02 MTR_3g112480 85.263 95 13 1 1 95 1 94 1.74e-50 163
MsG0180000111.01.T02 MTR_5g021160 60.000 80 32 0 16 95 2 81 4.08e-26 97.8
MsG0180000111.01.T02 MTR_5g021160 60.000 80 32 0 16 95 2 81 2.59e-25 97.1
MsG0180000111.01.T02 MTR_6g081840 71.212 66 19 0 30 95 19 84 2.78e-21 86.3
MsG0180000111.01.T02 MTR_5g025290 44.944 89 43 2 13 95 25 113 4.43e-20 83.2
MsG0180000111.01.T02 MTR_5g025290 47.436 78 41 0 18 95 8 85 5.44e-20 82.8
MsG0180000111.01.T02 MTR_5g025330 43.590 78 44 0 18 95 6 83 1.27e-18 79.3
MsG0180000111.01.T02 MTR_5g025370 46.154 78 42 0 18 95 7 84 1.46e-18 79.0
MsG0180000111.01.T02 MTR_5g025400 50.685 73 36 0 23 95 13 85 2.17e-18 78.6
MsG0180000111.01.T02 MTR_5g025340 44.872 78 43 0 18 95 7 84 9.20e-18 76.6
MsG0180000111.01.T02 MTR_8g072350 41.026 78 46 0 18 95 6 83 2.32e-17 75.5
MsG0180000111.01.T02 MTR_6g036450 46.914 81 42 1 15 95 10 89 2.65e-16 72.4
MsG0180000111.01.T02 MTR_8g041390 41.250 80 47 0 18 97 10 89 8.48e-16 71.2
MsG0180000111.01.T02 MTR_1g030600 47.826 69 36 0 26 94 23 91 1.25e-15 70.9
MsG0180000111.01.T02 MTR_1g051120 35.955 89 55 1 9 95 2 90 1.32e-15 68.9
MsG0180000111.01.T02 MTR_1g051120 35.955 89 55 1 9 95 2 90 2.26e-15 69.3
MsG0180000111.01.T02 MTR_1g051120 35.955 89 55 1 9 95 2 90 5.06e-15 68.9
MsG0180000111.01.T02 MTR_3g012420 41.250 80 47 0 18 97 14 93 5.18e-14 66.2
MsG0180000111.01.T02 MTR_1g030580 37.113 97 53 2 1 97 1 89 6.50e-14 65.9
MsG0180000111.01.T02 MTR_1g068630 41.558 77 45 0 18 94 12 88 7.64e-14 65.5
MsG0180000111.01.T02 MTR_3g072560 44.928 69 38 0 26 94 23 91 9.29e-14 65.5
MsG0180000111.01.T02 MTR_1g074070 39.744 78 47 0 18 95 13 90 2.24e-13 64.3
MsG0180000111.01.T02 MTR_3g072530 41.558 77 45 0 18 94 11 87 2.30e-13 64.3
MsG0180000111.01.T02 MTR_7g100050 42.254 71 41 0 24 94 16 86 2.37e-13 64.3
MsG0180000111.01.T02 MTR_3g072530 41.558 77 45 0 18 94 11 87 2.83e-13 63.9
MsG0180000111.01.T02 MTR_1g074160 35.897 78 50 0 18 95 10 87 5.07e-13 62.8
MsG0180000111.01.T02 MTR_1g074160 35.897 78 50 0 18 95 10 87 8.36e-13 62.8
MsG0180000111.01.T02 MTR_3g072500 36.923 65 41 0 18 82 17 81 1.44e-12 61.2
MsG0180000111.01.T02 MTR_1g073990 35.897 78 50 0 18 95 13 90 1.60e-12 62.0
MsG0180000111.01.T02 MTR_3g072500 32.895 76 51 0 19 94 18 93 2.00e-12 61.6
MsG0180000111.01.T02 MTR_3g072500 36.923 65 41 0 18 82 17 81 2.03e-12 61.2
MsG0180000111.01.T02 MTR_1g074120 34.615 78 51 0 18 95 13 90 3.62e-12 60.8
MsG0180000111.01.T02 MTR_0096s0100 42.029 69 40 0 26 94 23 91 5.00e-12 60.5
MsG0180000111.01.T02 MTR_1g074020 35.135 74 48 0 23 96 15 88 1.12e-11 59.7
MsG0180000111.01.T02 MTR_3g072520 43.284 67 38 0 26 92 14 80 5.62e-11 57.8
MsG0180000111.01.T01 MTR_1g023180 98.005 401 4 3 1 398 1 400 0.0 787
MsG0180000111.01.T01 MTR_3g112480 82.045 401 62 6 1 398 1 394 0.0 635
MsG0180000111.01.T01 MTR_3g112480 79.878 328 57 5 74 398 18 339 2.46e-180 505
MsG0180000111.01.T01 MTR_3g112480 79.121 273 48 5 129 398 1 267 3.32e-144 410
MsG0180000111.01.T01 MTR_6g081840 56.793 368 124 3 30 397 19 351 6.26e-141 406
MsG0180000111.01.T01 MTR_5g021160 54.090 379 145 4 16 389 2 356 1.51e-136 395
MsG0180000111.01.T01 MTR_5g021160 52.189 297 113 4 99 390 2 274 6.86e-100 298
MsG0180000111.01.T01 MTR_5g021160 55.926 270 103 1 16 285 2 255 3.53e-98 294
MsG0180000111.01.T01 MTR_5g025340 38.544 371 222 3 18 386 7 373 5.62e-85 264
MsG0180000111.01.T01 MTR_5g025290 41.618 346 190 5 18 359 8 345 6.48e-84 261
MsG0180000111.01.T01 MTR_5g025290 40.947 359 194 7 11 359 23 373 1.41e-83 261
MsG0180000111.01.T01 MTR_5g025400 40.000 365 209 4 23 385 13 369 7.06e-82 256
MsG0180000111.01.T01 MTR_5g025330 37.562 402 213 7 18 397 6 391 1.59e-81 261
MsG0180000111.01.T01 MTR_5g025370 39.554 359 205 4 18 374 7 355 3.77e-81 254
MsG0180000111.01.T01 MTR_8g072350 38.192 343 206 4 18 359 6 343 2.30e-78 247
MsG0180000111.01.T01 MTR_1g030580 38.162 359 195 3 1 357 1 334 1.31e-77 245
MsG0180000111.01.T01 MTR_1g074160 34.903 361 207 4 18 373 10 347 1.96e-76 241
MsG0180000111.01.T01 MTR_8g041390 38.261 345 192 4 18 358 10 337 2.82e-76 242
MsG0180000111.01.T01 MTR_1g074120 34.530 362 210 3 18 375 13 351 3.20e-76 240
MsG0180000111.01.T01 MTR_3g072500 35.735 347 207 2 18 364 17 347 4.54e-76 241
MsG0180000111.01.T01 MTR_1g074070 35.262 363 208 4 18 376 13 352 8.84e-76 239
MsG0180000111.01.T01 MTR_1g030600 38.372 344 195 3 23 365 20 347 1.34e-75 240
MsG0180000111.01.T01 MTR_3g072530 37.681 345 189 4 18 357 11 334 1.54e-74 236
MsG0180000111.01.T01 MTR_1g051120 34.167 360 216 4 9 365 2 343 2.37e-74 236
MsG0180000111.01.T01 MTR_1g038560 34.637 358 210 4 24 381 6 339 5.28e-73 231
MsG0180000111.01.T01 MTR_0096s0100 36.066 366 211 4 1 365 1 344 7.78e-73 232
MsG0180000111.01.T01 MTR_6g036450 36.080 352 207 4 15 365 10 344 1.04e-72 231
MsG0180000111.01.T01 MTR_2g016710 34.795 342 203 2 18 359 5 326 3.42e-72 230
MsG0180000111.01.T01 MTR_1g073990 36.338 355 200 4 18 368 13 345 7.66e-72 229
MsG0180000111.01.T01 MTR_3g012420 37.931 348 186 3 18 358 14 338 1.03e-71 230
MsG0180000111.01.T01 MTR_3g072560 37.389 337 187 2 23 357 20 334 1.07e-70 228
MsG0180000111.01.T01 MTR_1g074020 34.278 353 205 5 18 366 10 339 2.78e-70 225
MsG0180000111.01.T01 MTR_1g068630 36.127 346 190 3 18 357 12 332 1.61e-68 221
MsG0180000111.01.T01 MTR_7g111830 34.731 334 207 1 24 357 10 332 2.54e-68 221
MsG0180000111.01.T01 MTR_2g065550 36.170 376 213 7 24 391 13 369 5.56e-68 219
MsG0180000111.01.T01 MTR_1g070175 32.286 350 209 2 18 364 13 337 5.61e-68 219
MsG0180000111.01.T01 MTR_8g006010 34.748 377 221 6 18 393 7 359 1.53e-67 219
MsG0180000111.01.T01 MTR_4g106720 33.724 341 207 3 25 364 15 337 1.96e-67 218
MsG0180000111.01.T01 MTR_2g007990 34.456 386 228 4 10 388 4 371 9.29e-66 214
MsG0180000111.01.T01 MTR_1g114210 34.940 332 197 3 26 357 16 328 1.52e-65 213
MsG0180000111.01.T01 MTR_3g095460 34.066 364 195 4 23 371 7 340 3.51e-65 211
MsG0180000111.01.T01 MTR_7g100050 35.588 340 190 4 24 357 16 332 6.79e-65 212
MsG0180000111.01.T01 MTR_3g072520 37.278 338 195 2 23 359 11 332 2.29e-64 211
MsG0180000111.01.T01 MTR_1g030400 32.622 328 209 2 30 357 16 331 6.95e-63 206
MsG0180000111.01.T01 MTR_8g092650 34.821 336 207 2 23 358 7 330 7.32e-63 206
MsG0180000111.01.T01 MTR_2g016710 33.648 318 191 2 18 335 5 302 5.98e-61 200
MsG0180000111.01.T01 MTR_8g006120 35.735 347 204 3 12 357 1 329 8.80e-61 201
MsG0180000111.01.T01 MTR_3g095420 32.840 338 209 5 23 357 9 331 2.44e-60 199
MsG0180000111.01.T01 MTR_3g090550 34.688 320 188 3 38 357 23 321 3.83e-60 198
MsG0180000111.01.T01 MTR_3g095450 33.531 337 208 3 23 357 7 329 2.72e-59 197
MsG0180000111.01.T01 MTR_8g006090 34.853 373 214 4 24 395 14 358 9.79e-59 195
MsG0180000111.01.T01 MTR_4g129650 32.632 380 223 7 24 398 11 362 2.38e-58 194
MsG0180000111.01.T01 MTR_5g034990 35.227 352 204 3 11 360 2 331 5.69e-58 193
MsG0180000111.01.T01 MTR_2g027030 35.329 334 200 2 26 359 17 334 7.24e-58 193
MsG0180000111.01.T01 MTR_2g007260 36.826 334 200 2 26 359 19 341 2.53e-56 190
MsG0180000111.01.T01 MTR_2g007970 34.000 350 213 2 26 375 17 348 7.43e-56 189
MsG0180000111.01.T01 MTR_2g007960 35.294 340 210 2 24 363 15 344 4.91e-55 186
MsG0180000111.01.T01 MTR_3g072500 37.308 260 147 2 105 364 1 244 3.21e-54 181
MsG0180000111.01.T01 MTR_8g006050 32.923 325 184 4 52 373 25 318 1.48e-53 181
MsG0180000111.01.T01 MTR_5g034910 30.086 349 224 3 18 365 4 333 3.68e-52 177
MsG0180000111.01.T01 MTR_4g094342 32.653 343 218 2 10 352 2 331 1.74e-51 176
MsG0180000111.01.T01 MTR_2g102340 32.153 339 202 3 26 359 17 332 2.02e-51 176
MsG0180000111.01.T01 MTR_3g072500 34.902 255 150 2 18 272 17 255 2.08e-51 174
MsG0180000111.01.T01 MTR_3g095440 31.751 337 214 3 23 357 7 329 3.88e-51 175
MsG0180000111.01.T01 MTR_5g034980 30.448 335 211 5 26 358 12 326 3.19e-50 172
MsG0180000111.01.T01 MTR_4g094362 29.223 373 247 2 26 397 19 375 7.15e-50 172
MsG0180000111.01.T01 MTR_8g006090 35.526 304 168 3 92 395 3 278 4.14e-49 167
MsG0180000111.01.T01 MTR_3g019050 31.180 356 226 3 21 376 18 354 9.93e-49 170
MsG0180000111.01.T01 MTR_5g068790 29.032 372 243 3 21 386 18 374 2.43e-48 169
MsG0180000111.01.T01 MTR_3g072530 33.442 308 141 4 18 282 11 297 2.71e-48 166
MsG0180000111.01.T01 MTR_1g014510 32.738 336 207 3 25 358 15 333 8.71e-48 169
MsG0180000111.01.T01 MTR_1g074160 33.210 271 154 3 18 284 10 257 2.40e-47 163
MsG0180000111.01.T01 MTR_4g094360 30.060 336 220 1 24 359 17 337 4.68e-47 166
MsG0180000111.01.T01 MTR_5g069040 28.760 379 255 3 21 398 18 382 7.22e-47 165
MsG0180000111.01.T01 MTR_4g094352 31.510 384 237 5 24 398 15 381 1.00e-46 164
MsG0180000111.01.T01 MTR_8g006090 35.783 313 182 3 24 335 14 308 1.95e-46 162
MsG0180000111.01.T01 MTR_5g034930 30.746 335 210 6 26 358 11 325 6.24e-46 161
MsG0180000111.01.T01 MTR_8g092650 34.601 263 160 2 96 358 2 252 1.64e-44 155
MsG0180000111.01.T01 MTR_5g034970 30.925 346 204 6 16 359 2 314 3.98e-43 154
MsG0180000111.01.T01 MTR_0103s0090 31.548 336 207 4 25 358 15 329 6.29e-43 154
MsG0180000111.01.T01 MTR_4g094340 29.679 374 227 8 15 378 3 350 6.87e-42 151
MsG0180000111.01.T01 MTR_4g094340 29.679 374 227 8 15 378 21 368 8.69e-42 151
MsG0180000111.01.T01 MTR_4g129650 30.742 283 166 6 118 398 1 255 1.55e-40 145
MsG0180000111.01.T01 MTR_5g089390 27.327 333 219 2 25 357 18 327 8.31e-40 145
MsG0180000111.01.T01 MTR_4g100840 30.347 346 208 9 25 360 18 340 1.32e-39 145
MsG0180000111.01.T01 MTR_5g012650 30.523 344 215 8 18 357 5 328 4.59e-38 140
MsG0180000111.01.T01 MTR_3g072500 33.486 218 129 2 18 235 17 218 9.80e-38 136
MsG0180000111.01.T01 MTR_4g094360 31.418 261 164 2 99 359 45 290 1.62e-37 139
MsG0180000111.01.T01 MTR_6g007743 28.972 321 201 5 41 358 32 328 1.86e-37 139
MsG0180000111.01.T01 MTR_3g095440 31.474 251 156 3 23 271 7 243 3.06e-37 136
MsG0180000111.01.T01 MTR_4g094340 31.930 285 167 4 100 378 21 284 2.02e-36 134
MsG0180000111.01.T01 MTR_4g094360 27.885 312 210 1 24 335 17 313 2.03e-36 135
MsG0180000111.01.T01 MTR_6g007750 28.440 327 198 7 41 358 32 331 2.63e-36 136
MsG0180000111.01.T01 MTR_0103s0090 31.621 253 154 1 106 358 5 238 6.93e-34 127
MsG0180000111.01.T01 MTR_1g051120 30.435 230 140 3 9 236 2 213 8.31e-34 125
MsG0180000111.01.T01 MTR_6g007753 28.319 339 211 6 64 398 337 647 1.99e-33 132
MsG0180000111.01.T01 MTR_6g007753 25.373 268 172 3 132 398 83 323 3.44e-19 90.1
MsG0180000111.01.T01 MTR_6g007747 29.526 359 223 6 41 398 32 361 2.13e-33 128
MsG0180000111.01.T01 MTR_1g051120 30.837 227 137 3 9 233 2 210 3.27e-33 125
MsG0180000111.01.T01 MTR_6g007757 29.769 346 218 5 41 383 32 355 5.71e-32 124
MsG0180000111.01.T01 MTR_6g007760 25.902 305 204 4 35 337 25 309 8.00e-32 123
MsG0180000111.01.T01 MTR_1g052205 31.356 236 132 5 134 365 13 222 5.05e-31 119
MsG0180000111.01.T01 MTR_6g007740 27.893 337 218 6 24 358 15 328 8.45e-30 120
MsG0180000111.01.T01 MTR_5g034980 29.389 262 163 5 26 285 12 253 3.17e-29 115
MsG0180000111.01.T01 MTR_8g006090 34.387 253 147 3 24 275 14 248 4.07e-27 109
MsG0180000111.01.T01 MTR_2g102340 27.925 265 163 3 26 285 43 284 2.83e-25 105
MsG0180000111.01.T01 MTR_6g007757 28.632 234 143 4 41 272 32 243 3.74e-20 90.1
MsG0180000111.01.T01 MTR_4g094342 28.761 226 148 2 10 235 2 214 4.50e-19 86.7
MsG0180000111.01.T01 MTR_8g006090 35.326 184 101 2 92 275 3 168 4.84e-18 82.8
MsG0180000111.01.T01 MTR_4g094340 26.415 265 163 6 15 271 3 243 1.34e-17 82.4
MsG0180000111.01.T01 MTR_4g094340 26.415 265 163 6 15 271 21 261 1.85e-17 82.4
MsG0180000111.01.T01 MTR_1g068720 32.090 134 88 3 229 359 92 225 3.38e-14 72.0
MsG0180000111.01.T01 MTR_1g014790 34.328 134 70 3 100 232 42 158 4.35e-14 70.9
MsG0180000111.01.T01 MTR_4g094348 36.296 135 77 1 106 240 7 132 1.47e-13 68.9
MsG0180000111.01.T01 MTR_4g094340 26.721 247 132 8 6 232 5 222 3.48e-12 65.9
MsG0180000111.01.T01 MTR_8g076800 29.921 127 82 2 209 329 146 271 8.79e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000111.01.T02 AT1G75500 78.947 95 18 1 1 95 1 93 8.69e-46 151
MsG0180000111.01.T02 AT1G75500 78.947 95 18 1 1 95 1 93 8.69e-46 151
MsG0180000111.01.T02 AT3G18200 66.250 80 27 0 16 95 29 108 2.67e-32 115
MsG0180000111.01.T02 AT3G53210 61.250 80 31 0 16 95 4 83 1.34e-29 106
MsG0180000111.01.T02 AT3G53210 61.250 80 31 0 16 95 4 83 7.26e-29 106
MsG0180000111.01.T02 AT3G45870 48.438 64 33 0 18 81 8 71 4.11e-17 73.9
MsG0180000111.01.T02 AT3G45870 48.438 64 33 0 18 81 8 71 8.40e-17 73.6
MsG0180000111.01.T02 AT3G45870 48.438 64 33 0 18 81 8 71 1.03e-16 73.9
MsG0180000111.01.T02 AT5G07050 45.205 73 40 0 25 97 21 93 1.22e-16 73.6
MsG0180000111.01.T02 AT5G45370 44.872 78 43 0 18 95 16 93 3.25e-16 72.4
MsG0180000111.01.T02 AT5G45370 44.872 78 43 0 18 95 16 93 3.25e-16 72.4
MsG0180000111.01.T02 AT5G45370 44.872 78 43 0 18 95 16 93 3.67e-16 72.0
MsG0180000111.01.T02 AT1G09380 41.667 72 42 0 24 95 10 81 1.62e-14 67.8
MsG0180000111.01.T02 AT2G39510 40.845 71 42 0 24 94 10 80 3.43e-14 66.6
MsG0180000111.01.T02 AT3G56620 39.286 84 51 0 12 95 1 84 6.73e-13 63.2
MsG0180000111.01.T02 AT4G19185 49.153 59 30 0 23 81 22 80 7.02e-13 63.2
MsG0180000111.01.T02 AT2G37460 39.744 78 44 1 18 95 11 85 7.38e-13 63.2
MsG0180000111.01.T02 AT1G21890 37.333 75 44 1 23 97 12 83 3.82e-12 60.8
MsG0180000111.01.T02 AT4G08290 40.789 76 45 0 19 94 10 85 4.20e-12 60.8
MsG0180000111.01.T02 AT1G21890 37.333 75 44 1 23 97 12 83 8.36e-12 60.1
MsG0180000111.01.T02 AT4G08290 41.333 75 44 0 18 92 9 83 8.57e-12 59.7
MsG0180000111.01.T02 AT2G40900 37.209 86 54 0 12 97 1 86 1.78e-11 58.9
MsG0180000111.01.T02 AT5G45370 43.333 60 34 0 18 77 16 75 8.11e-11 57.0
MsG0180000111.01.T01 AT1G75500 74.378 402 86 6 1 398 1 389 0.0 592
MsG0180000111.01.T01 AT1G75500 74.378 402 86 6 1 398 1 389 0.0 592
MsG0180000111.01.T01 AT3G53210 52.480 383 160 3 16 393 4 369 1.25e-142 410
MsG0180000111.01.T01 AT3G18200 55.135 370 146 2 16 385 29 378 2.27e-140 405
MsG0180000111.01.T01 AT3G53210 56.877 269 99 2 16 284 4 255 4.46e-106 313
MsG0180000111.01.T01 AT3G53210 50.165 303 129 3 96 393 27 312 7.15e-103 307
MsG0180000111.01.T01 AT3G18200 49.627 268 115 2 118 385 1 248 1.17e-84 258
MsG0180000111.01.T01 AT4G30420 37.596 391 215 7 18 398 5 376 1.46e-78 247
MsG0180000111.01.T01 AT4G30420 37.922 385 210 7 24 398 1 366 7.90e-78 245
MsG0180000111.01.T01 AT5G45370 37.845 362 219 3 18 378 16 372 9.45e-78 245
MsG0180000111.01.T01 AT5G45370 37.845 362 219 3 18 378 16 372 9.45e-78 245
MsG0180000111.01.T01 AT5G45370 37.396 361 198 2 18 378 16 348 1.56e-77 244
MsG0180000111.01.T01 AT3G45870 41.667 336 186 3 18 352 8 334 1.50e-75 239
MsG0180000111.01.T01 AT5G07050 37.110 353 204 3 23 371 19 357 6.66e-75 238
MsG0180000111.01.T01 AT2G39510 36.765 340 188 3 24 358 10 327 1.90e-71 229
MsG0180000111.01.T01 AT1G09380 38.138 333 190 2 24 355 10 327 3.46e-71 228
MsG0180000111.01.T01 AT1G44800 34.174 357 205 3 18 365 7 342 5.45e-71 228
MsG0180000111.01.T01 AT4G08290 35.092 379 228 2 18 395 9 370 6.11e-71 228
MsG0180000111.01.T01 AT4G08300 34.181 354 212 3 18 368 7 342 1.00e-70 227
MsG0180000111.01.T01 AT2G40900 36.494 348 198 2 12 359 1 325 7.87e-70 225
MsG0180000111.01.T01 AT1G21890 33.791 364 228 2 23 384 12 364 8.59e-70 225
MsG0180000111.01.T01 AT3G45870 41.066 319 178 3 18 335 8 317 1.92e-69 222
MsG0180000111.01.T01 AT4G19185 39.118 340 197 4 23 359 22 354 1.89e-68 222
MsG0180000111.01.T01 AT3G30340 32.845 341 210 3 26 365 15 337 2.43e-67 218
MsG0180000111.01.T01 AT2G37460 35.180 361 203 6 18 372 11 346 5.78e-65 212
MsG0180000111.01.T01 AT1G43650 33.708 356 213 4 23 376 8 342 4.66e-63 206
MsG0180000111.01.T01 AT5G13670 33.333 342 211 3 18 358 4 329 6.54e-62 204
MsG0180000111.01.T01 AT4G01440 34.663 326 195 2 41 366 29 336 8.90e-62 203
MsG0180000111.01.T01 AT4G01430 33.631 336 205 3 24 357 11 330 1.96e-61 202
MsG0180000111.01.T01 AT1G01070 33.623 345 211 2 16 359 10 337 8.17e-61 201
MsG0180000111.01.T01 AT1G11450 34.718 337 200 3 24 359 18 335 1.09e-60 200
MsG0180000111.01.T01 AT3G56620 33.721 344 206 2 12 355 1 322 4.78e-59 197
MsG0180000111.01.T01 AT1G21890 34.603 315 193 2 23 335 12 315 8.84e-58 192
MsG0180000111.01.T01 AT3G45870 41.636 269 147 3 18 285 8 267 3.80e-57 189
MsG0180000111.01.T01 AT1G11450 35.806 310 179 3 51 359 1 291 6.51e-57 189
MsG0180000111.01.T01 AT4G01440 35.254 295 173 2 41 335 29 305 3.49e-56 187
MsG0180000111.01.T01 AT1G11450 36.213 301 172 3 60 359 3 284 2.07e-55 185
MsG0180000111.01.T01 AT1G11460 32.938 337 207 2 24 359 18 336 5.62e-55 185
MsG0180000111.01.T01 AT4G28040 30.612 343 205 4 18 357 4 316 7.97e-53 180
MsG0180000111.01.T01 AT4G28040 30.612 343 205 4 18 357 4 316 7.97e-53 180
MsG0180000111.01.T01 AT4G28040 30.612 343 205 4 18 357 4 316 7.97e-53 180
MsG0180000111.01.T01 AT4G28040 30.612 343 205 4 18 357 4 316 7.97e-53 180
MsG0180000111.01.T01 AT4G28040 30.612 343 205 4 18 357 4 316 7.97e-53 180
MsG0180000111.01.T01 AT5G64700 30.641 359 236 4 18 375 4 350 1.06e-52 179
MsG0180000111.01.T01 AT4G01430 32.803 314 193 3 24 335 11 308 1.09e-52 178
MsG0180000111.01.T01 AT1G11450 33.546 313 188 2 24 335 18 311 5.74e-52 176
MsG0180000111.01.T01 AT5G45370 35.636 275 171 3 105 378 1 270 9.32e-50 169
MsG0180000111.01.T01 AT5G45370 35.636 275 171 3 105 378 1 270 9.32e-50 169
MsG0180000111.01.T01 AT1G68170 30.366 382 243 3 14 394 5 364 2.13e-49 171
MsG0180000111.01.T01 AT1G01070 33.788 293 176 2 68 359 15 290 3.79e-49 169
MsG0180000111.01.T01 AT2G37450 32.665 349 183 8 24 366 11 313 5.40e-49 169
MsG0180000111.01.T01 AT4G19185 36.567 268 160 4 95 359 16 276 7.14e-49 168
MsG0180000111.01.T01 AT1G25270 32.440 336 211 2 24 359 5 324 8.09e-49 169
MsG0180000111.01.T01 AT1G68170 30.997 371 233 3 25 394 6 354 1.06e-48 169
MsG0180000111.01.T01 AT4G08290 35.821 268 154 2 18 284 9 259 1.23e-47 164
MsG0180000111.01.T01 AT4G01450 35.535 318 181 2 41 357 29 323 8.28e-47 164
MsG0180000111.01.T01 AT5G40210 30.882 340 193 7 25 360 16 317 1.37e-46 163
MsG0180000111.01.T01 AT3G28130 32.558 344 204 10 22 359 13 334 2.59e-46 162
MsG0180000111.01.T01 AT1G11450 36.398 261 146 3 100 359 2 243 2.82e-46 160
MsG0180000111.01.T01 AT5G40240 29.917 361 236 4 1 360 13 357 6.03e-46 162
MsG0180000111.01.T01 AT5G40240 31.157 337 215 4 25 360 23 343 8.25e-46 162
MsG0180000111.01.T01 AT5G40240 31.157 337 215 4 25 360 23 343 8.25e-46 162
MsG0180000111.01.T01 AT4G01450 34.797 296 169 2 41 335 29 301 3.99e-45 159
MsG0180000111.01.T01 AT3G30340 32.184 261 158 3 26 285 15 257 4.05e-45 157
MsG0180000111.01.T01 AT4G01440 35.918 245 139 2 41 285 29 255 1.32e-44 155
MsG0180000111.01.T01 AT3G28100 30.312 353 218 8 25 373 17 345 2.97e-43 154
MsG0180000111.01.T01 AT3G28050 30.749 374 224 10 25 390 15 361 7.11e-43 154
MsG0180000111.01.T01 AT5G40230 28.649 370 232 6 25 387 24 368 8.69e-43 154
MsG0180000111.01.T01 AT3G28130 33.463 257 151 6 105 359 10 248 6.52e-42 149
MsG0180000111.01.T01 AT3G28130 33.463 257 151 6 105 359 10 248 6.52e-42 149
MsG0180000111.01.T01 AT3G28070 30.147 272 166 5 105 374 8 257 6.08e-40 143
MsG0180000111.01.T01 AT1G70260 28.371 356 236 4 24 373 14 356 6.36e-40 146
MsG0180000111.01.T01 AT3G28080 30.117 342 209 7 25 359 17 335 1.32e-39 145
MsG0180000111.01.T01 AT3G28070 30.147 272 166 5 105 374 100 349 5.93e-39 143
MsG0180000111.01.T01 AT3G28080 31.128 257 157 4 105 359 8 246 7.45e-39 140
MsG0180000111.01.T01 AT3G28080 31.128 257 157 4 105 359 8 246 7.45e-39 140
MsG0180000111.01.T01 AT3G28080 31.128 257 157 4 105 359 8 246 7.45e-39 140
MsG0180000111.01.T01 AT3G28080 31.128 257 157 4 105 359 8 246 7.45e-39 140
MsG0180000111.01.T01 AT4G01440 31.557 244 149 2 123 366 3 228 1.04e-38 140
MsG0180000111.01.T01 AT4G01440 31.557 244 149 2 123 366 3 228 1.04e-38 140
MsG0180000111.01.T01 AT4G01450 34.553 246 137 2 41 285 29 251 2.01e-38 139
MsG0180000111.01.T01 AT3G28080 31.128 257 157 4 105 359 89 327 3.46e-38 141
MsG0180000111.01.T01 AT3G45870 37.727 220 127 3 134 352 49 259 1.59e-37 138
MsG0180000111.01.T01 AT5G45370 33.607 244 156 3 136 378 74 312 2.86e-37 137
MsG0180000111.01.T01 AT5G47470 27.401 354 226 6 9 357 17 344 1.91e-36 136
MsG0180000111.01.T01 AT5G47470 27.401 354 226 6 9 357 45 372 2.02e-36 137
MsG0180000111.01.T01 AT5G47470 27.401 354 226 6 9 357 45 372 2.45e-36 137
MsG0180000111.01.T01 AT1G43650 32.061 262 157 3 23 284 8 248 5.58e-36 133
MsG0180000111.01.T01 AT2G37450 33.459 266 146 6 107 366 1 241 7.22e-36 132
MsG0180000111.01.T01 AT4G16620 27.451 357 231 5 30 378 20 356 2.02e-34 131
MsG0180000111.01.T01 AT4G15540 28.056 360 223 5 25 383 20 344 5.20e-34 129
MsG0180000111.01.T01 AT4G15540 28.056 360 223 5 25 383 20 344 5.20e-34 129
MsG0180000111.01.T01 AT4G01450 35.514 214 114 2 41 253 29 219 3.44e-33 125
MsG0180000111.01.T01 AT3G45870 36.453 203 119 3 134 335 49 242 1.52e-31 120
MsG0180000111.01.T01 AT3G45870 36.453 203 119 3 134 335 49 242 1.52e-31 120
MsG0180000111.01.T01 AT1G60050 27.301 326 221 3 38 359 29 342 6.22e-31 122
MsG0180000111.01.T01 AT5G64700 31.967 244 153 4 29 271 15 246 2.88e-30 117
MsG0180000111.01.T01 AT3G45870 43.662 142 79 1 211 352 43 183 4.41e-30 116
MsG0180000111.01.T01 AT3G28130 30.837 227 137 6 135 359 1 209 1.43e-29 114
MsG0180000111.01.T01 AT4G01430 30.769 208 127 2 151 357 2 193 1.71e-29 114
MsG0180000111.01.T01 AT3G28070 28.755 233 146 4 105 335 100 314 1.26e-28 114
MsG0180000111.01.T01 AT3G28070 27.273 242 152 5 135 374 1 220 2.92e-27 108
MsG0180000111.01.T01 AT2G37450 36.301 146 92 1 222 366 129 274 1.25e-26 108
MsG0180000111.01.T01 AT3G28080 27.753 227 144 4 135 359 1 209 3.36e-26 105
MsG0180000111.01.T01 AT4G24980 27.726 321 148 7 38 358 3 239 1.09e-25 105
MsG0180000111.01.T01 AT4G16620 27.240 279 176 4 107 378 1 259 2.76e-24 101
MsG0180000111.01.T01 AT4G16620 27.240 279 176 4 107 378 1 259 2.76e-24 101
MsG0180000111.01.T01 AT3G28130 31.660 259 150 9 22 274 13 250 6.14e-24 100
MsG0180000111.01.T01 AT3G28100 31.102 254 152 6 25 274 17 251 2.38e-23 98.6
MsG0180000111.01.T01 AT3G28130 37.342 158 91 4 22 175 13 166 6.49e-21 90.9
MsG0180000111.01.T01 AT3G28100 38.562 153 90 3 25 175 17 167 1.30e-20 90.9
MsG0180000111.01.T01 AT4G16620 28.889 225 139 3 30 253 20 224 1.68e-20 90.9
MsG0180000111.01.T01 AT3G45870 35.948 153 88 3 134 285 49 192 2.67e-19 85.9
MsG0180000111.01.T01 AT3G45870 35.762 151 87 3 136 285 4 145 3.46e-19 84.3
MsG0180000111.01.T01 AT3G28080 36.646 161 90 4 25 178 17 172 4.08e-16 79.0
MsG0180000111.01.T01 AT3G28080 33.784 74 48 1 286 359 209 281 9.83e-11 62.8
MsG0180000111.01.T01 AT3G28080 47.887 71 37 0 105 175 8 78 2.87e-15 74.7
MsG0180000111.01.T01 AT3G28080 33.784 74 48 1 286 359 120 192 4.91e-11 62.4

Find 72 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGATGTCTTTATCTAAT+TGG 0.160867 1:+1620411 MsG0180000111.01.T01:CDS
ACAGTACCAATGATTGATTT+TGG 0.182728 1:+1620348 MsG0180000111.01.T01:CDS
TTTCTTTATGGTTTGATTTA+CGG 0.229174 1:+1621777 MsG0180000111.01.T01:three_prime_UTR
TATGTTAGTTAATTTCTTTA+TGG 0.244766 1:+1621765 MsG0180000111.01.T01:three_prime_UTR
ACTTCCTATACATGTTTCTT+TGG 0.256420 1:+1620510 MsG0180000111.01.T01:CDS
TTGCATTTGCAGTACAAATA+TGG 0.283549 1:+1620741 MsG0180000111.01.T01:CDS
GCAATTTCTTCTTATTGCTT+TGG 0.291149 1:+1620539 MsG0180000111.01.T01:CDS
ATCATGGCTTCTATTGCTTT+AGG 0.322920 1:+1620830 MsG0180000111.01.T01:CDS
GATGCTTTAGCGTGGCTTGC+GGG 0.332227 1:-1621491 None:intergenic
CAGAGGAAGTTTAAATTAAT+CGG 0.338959 1:-1619700 None:intergenic
CTAACTAACCGCGTATAAAA+TGG 0.340348 1:-1620616 None:intergenic
AATCAAGGTTTCTATTTGCT+TGG 0.366777 1:+1619975 MsG0180000111.01.T01:CDS
TCTTAGTAGATTATTTAGAT+TGG 0.388213 1:+1621637 MsG0180000111.01.T01:three_prime_UTR
CACACAAGCATGGTACTATA+AGG 0.389716 1:-1621582 None:intergenic
ATTGTTTGTCTTGGTCTGCT+TGG 0.391168 1:+1620436 MsG0180000111.01.T01:CDS
CTTAGTAGATTATTTAGATT+GGG 0.394466 1:+1621638 MsG0180000111.01.T01:three_prime_UTR
TTGCAGGGAGTGGTGGCATC+TGG 0.399814 1:+1620716 MsG0180000111.01.T01:intron
ATCAAGGTTTCTATTTGCTT+GGG 0.402879 1:+1619976 MsG0180000111.01.T01:CDS
CCACTATTTAAGTGACTACT+TGG 0.407294 1:-1620291 None:intergenic
TAATTGGACATTGTTTGTCT+TGG 0.407693 1:+1620427 MsG0180000111.01.T01:CDS
CTAACATATATAAAAGCATA+TGG 0.411275 1:-1621750 None:intergenic
TGGACTATACTTTGTGTTGT+GGG 0.419500 1:+1621394 MsG0180000111.01.T01:CDS
GCTACAACAAAAGTTTGAAC+AGG 0.438205 1:-1620806 None:intergenic
AACAGGATTACAGCAAATCA+AGG 0.453990 1:+1619960 MsG0180000111.01.T01:intron
TTGAAAGAAATGCTCAGGCT+TGG 0.458050 1:+1620565 MsG0180000111.01.T01:CDS
ATGGGAACATGTTGTAATAG+TGG 0.458354 1:+1621686 MsG0180000111.01.T01:three_prime_UTR
CCCTGCCATTACATTTCTCA+TGG 0.470693 1:+1620046 MsG0180000111.01.T01:CDS
ATTGTCCCAAAATCAATCAT+TGG 0.477316 1:-1620354 None:intergenic
CAAATATGGTGCATTGATAG+AGG 0.486474 1:+1620755 MsG0180000111.01.T01:CDS
CCAAGTAGTCACTTAAATAG+TGG 0.486646 1:+1620291 MsG0180000111.01.T01:CDS
GACGAGCAGGATACTTCTTA+AGG 0.487109 1:-1620479 None:intergenic
GTGAGACTGAATCGAAAAGA+TGG 0.488376 1:+1620186 MsG0180000111.01.T01:CDS
AGGTTTCTATTTGCTTGGGT+TGG 0.489312 1:+1619980 MsG0180000111.01.T01:CDS
GATGGAATTGCTAAAGTAGC+AGG 0.489379 1:+1620204 MsG0180000111.01.T01:CDS
CTGGACTATACTTTGTGTTG+TGG 0.492738 1:+1621393 MsG0180000111.01.T01:CDS
GAGTCCAAAGAAACATGTAT+AGG 0.500964 1:-1620514 None:intergenic
TTCTCATGGCAGTCATACTA+AGG 0.503575 1:+1620060 MsG0180000111.01.T01:CDS
TTTAGGAGAAGAGTTCTACT+TGG 0.503735 1:+1620847 MsG0180000111.01.T01:CDS
GCCATGAGAAATGTAATGGC+AGG 0.506658 1:-1620047 None:intergenic
ATAGTGGATGTCACTAAAAG+TGG 0.518080 1:+1621702 MsG0180000111.01.T01:three_prime_UTR
CTACTTGGACTATATATAGT+TGG 0.532157 1:-1620276 None:intergenic
GAGAAGAGTTCTACTTGGGC+GGG 0.532422 1:+1620852 MsG0180000111.01.T01:CDS
ATGTCACTTGGTGATGCAAA+GGG 0.532729 1:+1620375 MsG0180000111.01.T01:CDS
GACTAATTTCACAAGGCTCT+AGG 0.533576 1:-1621727 None:intergenic
TGTATTGCTGATGCAAAGGT+AGG 0.537203 1:-1620014 None:intergenic
GAAGTGACAGAAAGACGAGC+AGG 0.543364 1:-1620492 None:intergenic
TGATACACTGCAACAAACAC+TGG 0.547318 1:-1620782 None:intergenic
TCAGTGATTACATTATATCA+AGG 0.554127 1:+1620252 MsG0180000111.01.T01:CDS
GTATTGCTGATGCAAAGGTA+GGG 0.556287 1:-1620013 None:intergenic
TTAGGAGAAGAGTTCTACTT+GGG 0.557775 1:+1620848 MsG0180000111.01.T01:CDS
AATTAATTTGCAGGGAGTGG+TGG 0.558908 1:+1620709 MsG0180000111.01.T01:intron
GCAGGATACTTCTTAAGGAC+AGG 0.559573 1:-1620474 None:intergenic
TAACATATATAAAAGCATAT+GGG 0.562751 1:-1621749 None:intergenic
AGAGAAGAAATTATTTGCAA+AGG 0.564376 1:+1621427 MsG0180000111.01.T01:CDS
TAAAGCAATAGAAGCCATGA+TGG 0.564411 1:-1620828 None:intergenic
AATGTCACTTGGTGATGCAA+AGG 0.570694 1:+1620374 MsG0180000111.01.T01:CDS
GGTGCAGTGTTGATAGTAGC+TGG 0.570883 1:+1621374 MsG0180000111.01.T01:CDS
TCTGTTGAAGAAGATAGGAA+TGG 0.578628 1:-1621524 None:intergenic
TAGTGGATGTCACTAAAAGT+GGG 0.583894 1:+1621703 MsG0180000111.01.T01:three_prime_UTR
TGATGCTTTAGCGTGGCTTG+CGG 0.596033 1:-1621492 None:intergenic
GACTGCCATGAGAAATGTAA+TGG 0.601131 1:-1620051 None:intergenic
GTTCTGTATTGCTGATGCAA+AGG 0.604446 1:-1620018 None:intergenic
GGAGAAGAGTTCTACTTGGG+CGG 0.607421 1:+1620851 MsG0180000111.01.T01:CDS
AGGAAGTTTAAATTAATCGG+TGG 0.623492 1:-1619697 None:intergenic
GGACTATACTTTGTGTTGTG+GGG 0.631775 1:+1621395 MsG0180000111.01.T01:CDS
CCATGAGAAATGTAATGGCA+GGG 0.635566 1:-1620046 None:intergenic
TATCACAACACACACAAGCA+TGG 0.644681 1:-1621592 None:intergenic
CATATGGGACTAATTTCACA+AGG 0.653189 1:-1621734 None:intergenic
TATTGCTGATGCAAAGGTAG+GGG 0.668908 1:-1620012 None:intergenic
ATATGGTGCATTGATAGAGG+AGG 0.677817 1:+1620758 MsG0180000111.01.T01:CDS
GAGTGAGTGATGCTTTAGCG+TGG 0.695699 1:-1621499 None:intergenic
AGTGGATGTCACTAAAAGTG+GGG 0.699194 1:+1621704 MsG0180000111.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAATTATATTAAATTA+AGG + Chr1:1619903-1619922 MsG0180000111.01.T01:intron 0.0%
!!! AAATTAATTTTATAAATTAA+AGG + Chr1:1619836-1619855 MsG0180000111.01.T01:intron 0.0%
!!! TTTTTTTTTTTTTTTTATAT+TGG + Chr1:1619329-1619348 MsG0180000111.01.T01:intron 0.0%
!!! ATATATTATTAAAGGTATAA+AGG - Chr1:1619929-1619948 None:intergenic 10.0%
!!! TTTTTTTTAATTAATTTGCA+GGG + Chr1:1620701-1620720 MsG0180000111.01.T01:intron 10.0%
!!! TTTTTTTTTAATTAATTTGC+AGG + Chr1:1620700-1620719 MsG0180000111.01.T01:intron 10.0%
!! AATATTAATGAAATTGTTAG+AGG - Chr1:1619252-1619271 None:intergenic 15.0%
!! ATGAATAAAGTAAAATCAAA+AGG - Chr1:1621321-1621340 None:intergenic 15.0%
!! TATCATAAACATTTGAATTA+AGG - Chr1:1620901-1620920 None:intergenic 15.0%
!! TATGTTAGTTAATTTCTTTA+TGG + Chr1:1621765-1621784 MsG0180000111.01.T01:three_prime_UTR 15.0%
!! TGAATAAAGTAAAATCAAAA+GGG - Chr1:1621320-1621339 None:intergenic 15.0%
!! TTAATTCAATTATTCTACAA+TGG + Chr1:1618997-1619016 MsG0180000111.01.T01:intron 15.0%
!! TTCAGCATATATATTATTAA+AGG - Chr1:1619937-1619956 None:intergenic 15.0%
!!! GAAAGATATGTAATTTTATT+GGG + Chr1:1619526-1619545 MsG0180000111.01.T01:intron 15.0%
!!! TAACATATATAAAAGCATAT+GGG - Chr1:1621752-1621771 None:intergenic 15.0%
!!! TGAAAGATATGTAATTTTAT+TGG + Chr1:1619525-1619544 MsG0180000111.01.T01:intron 15.0%
!!! TTGTAACCTTTTATAAAAAT+TGG + Chr1:1619441-1619460 MsG0180000111.01.T01:intron 15.0%
!! AATATTGTCAAAAGTTTCAT+AGG + Chr1:1619494-1619513 MsG0180000111.01.T01:intron 20.0%
!! AATGATCCTGTAATATAAAA+GGG - Chr1:1621354-1621373 None:intergenic 20.0%
!! ATATATATGCTGAATTAAAC+AGG + Chr1:1619943-1619962 MsG0180000111.01.T01:intron 20.0%
!! CTTAGTAGATTATTTAGATT+GGG + Chr1:1621638-1621657 MsG0180000111.01.T01:three_prime_UTR 20.0%
!! GTATTTACTAAACAACTTAT+CGG + Chr1:1621059-1621078 MsG0180000111.01.T01:intron 20.0%
!! TATAATGTACAGAATTTCAT+AGG - Chr1:1619280-1619299 None:intergenic 20.0%
!! TCTTAGTAGATTATTTAGAT+TGG + Chr1:1621637-1621656 MsG0180000111.01.T01:three_prime_UTR 20.0%
!!! AAGTTTTTGTTACCTAATTT+AGG + Chr1:1621183-1621202 MsG0180000111.01.T01:intron 20.0%
!!! AATTTTGACCAATTTAATTG+AGG - Chr1:1618945-1618964 None:intergenic 20.0%
!!! AGTTTTTGTTACCTAATTTA+GGG + Chr1:1621184-1621203 MsG0180000111.01.T01:intron 20.0%
!!! ATATGCAAAATTTTATCAAC+AGG + Chr1:1620154-1620173 MsG0180000111.01.T01:intron 20.0%
!!! ATATTTAGTTCCTGTTAAAA+TGG - Chr1:1619479-1619498 None:intergenic 20.0%
!!! CTAACATATATAAAAGCATA+TGG - Chr1:1621753-1621772 None:intergenic 20.0%
!!! TAATATCCCTTTTATATTAC+AGG + Chr1:1621345-1621364 MsG0180000111.01.T01:intron 20.0%
!!! TATTTAGTTCCTGTTAAAAT+GGG - Chr1:1619478-1619497 None:intergenic 20.0%
!!! TTTCTTTATGGTTTGATTTA+CGG + Chr1:1621777-1621796 MsG0180000111.01.T01:three_prime_UTR 20.0%
!!! TTTGATTGCGATTTTATTTT+TGG + Chr1:1621093-1621112 MsG0180000111.01.T01:intron 20.0%
! AGAGAAGAAATTATTTGCAA+AGG + Chr1:1621427-1621446 MsG0180000111.01.T01:CDS 25.0%
! CAATGATCCTGTAATATAAA+AGG - Chr1:1621355-1621374 None:intergenic 25.0%
! CAGAGGAAGTTTAAATTAAT+CGG - Chr1:1619703-1619722 None:intergenic 25.0%
! GTAACAAAAACTTGATCATA+GGG - Chr1:1621176-1621195 None:intergenic 25.0%
! TAATGAAATTGTTAGAGGAA+TGG - Chr1:1619247-1619266 None:intergenic 25.0%
! TAATTTAAACCTAATAGTCG+TGG - Chr1:1620642-1620661 None:intergenic 25.0%
! TAGGATATACTACTATTGAA+TGG + Chr1:1621242-1621261 MsG0180000111.01.T01:intron 25.0%
! TCAGTGATTACATTATATCA+AGG + Chr1:1620252-1620271 MsG0180000111.01.T01:CDS 25.0%
! TTAATTAGCAAAAGAAAGGT+GGG - Chr1:1618896-1618915 None:intergenic 25.0%
! TTCCTTAACATATTCTCTTA+AGG + Chr1:1619353-1619372 MsG0180000111.01.T01:intron 25.0%
! TTGAAGCAAAAAATCATCAT+AGG + Chr1:1621223-1621242 MsG0180000111.01.T01:intron 25.0%
! TTGAATTAAGGATCGTAATT+AGG - Chr1:1620889-1620908 None:intergenic 25.0%
! TTGGTTAATTAGCAAAAGAA+AGG - Chr1:1618900-1618919 None:intergenic 25.0%
!! AACGTGCCAATTTTTATAAA+AGG - Chr1:1619450-1619469 None:intergenic 25.0%
!! AATACCTTTTATCTCACTTT+AGG - Chr1:1621025-1621044 None:intergenic 25.0%
!! CTTTTATATTACAGGATCAT+TGG + Chr1:1621353-1621372 MsG0180000111.01.T01:intron 25.0%
!! GGAACAATATTTTGTGTAAT+TGG + Chr1:1620225-1620244 MsG0180000111.01.T01:CDS 25.0%
!! TTTTCCAAGAAATAAGCAAA+TGG - Chr1:1619217-1619236 None:intergenic 25.0%
AATCAAGGTTTCTATTTGCT+TGG + Chr1:1619975-1619994 MsG0180000111.01.T01:CDS 30.0%
ACTTCCTATACATGTTTCTT+TGG + Chr1:1620510-1620529 MsG0180000111.01.T01:CDS 30.0%
AGGAAGTTTAAATTAATCGG+TGG - Chr1:1619700-1619719 None:intergenic 30.0%
ATCAAGGTTTCTATTTGCTT+GGG + Chr1:1619976-1619995 MsG0180000111.01.T01:CDS 30.0%
ATGACCTAAAGTGAGATAAA+AGG + Chr1:1621018-1621037 MsG0180000111.01.T01:intron 30.0%
ATTGTCCCAAAATCAATCAT+TGG - Chr1:1620357-1620376 None:intergenic 30.0%
CTAATTAACCAACACTAGTT+TGG + Chr1:1618908-1618927 MsG0180000111.01.T01:five_prime_UTR 30.0%
CTACTTGGACTATATATAGT+TGG - Chr1:1620279-1620298 None:intergenic 30.0%
CTTGGATGTCTTTATCTAAT+TGG + Chr1:1620411-1620430 MsG0180000111.01.T01:CDS 30.0%
GCAATTTCTTCTTATTGCTT+TGG + Chr1:1620539-1620558 MsG0180000111.01.T01:CDS 30.0%
GGTAACAAAAACTTGATCAT+AGG - Chr1:1621177-1621196 None:intergenic 30.0%
GTATCATTACATAAGATACG+TGG - Chr1:1620988-1621007 None:intergenic 30.0%
GTTAATTAGCAAAAGAAAGG+TGG - Chr1:1618897-1618916 None:intergenic 30.0%
TAAGGATCGTAATTAGGATT+AGG - Chr1:1620883-1620902 None:intergenic 30.0%
TAATTGCTTTGTGAGTGTTT+AGG - Chr1:1620936-1620955 None:intergenic 30.0%
TAATTGGACATTGTTTGTCT+TGG + Chr1:1620427-1620446 MsG0180000111.01.T01:CDS 30.0%
TGCCTTAAGAGAATATGTTA+AGG - Chr1:1619358-1619377 None:intergenic 30.0%
TTGCATTTGCAGTACAAATA+TGG + Chr1:1620741-1620760 MsG0180000111.01.T01:CDS 30.0%
! CATTTTCTGTTGAAGAAGAT+AGG - Chr1:1621532-1621551 None:intergenic 30.0%
! GTTTCTTTTCCTTTTTGTTC+AGG + Chr1:1619665-1619684 MsG0180000111.01.T01:intron 30.0%
! TATTCTACAATGGCTGATTT+AGG + Chr1:1619007-1619026 MsG0180000111.01.T01:intron 30.0%
!! ACAGTACCAATGATTGATTT+TGG + Chr1:1620348-1620367 MsG0180000111.01.T01:CDS 30.0%
!! CAGTACCAATGATTGATTTT+GGG + Chr1:1620349-1620368 MsG0180000111.01.T01:CDS 30.0%
!! TTTAATTAATTTGCAGGGAG+TGG + Chr1:1620706-1620725 MsG0180000111.01.T01:intron 30.0%
!!! TCTTTTTTCTCGCACTTATT+GGG + Chr1:1619728-1619747 MsG0180000111.01.T01:CDS 30.0%
!!! TTCTTTTTTCTCGCACTTAT+TGG + Chr1:1619727-1619746 MsG0180000111.01.T01:CDS 30.0%
AACAGGATTACAGCAAATCA+AGG + Chr1:1619960-1619979 MsG0180000111.01.T01:intron 35.0%
AAGGGAAAAAATTGGACACT+TGG + Chr1:1620393-1620412 MsG0180000111.01.T01:CDS 35.0%
AGAAATAAGCAAATGGAAGG+AGG - Chr1:1619210-1619229 None:intergenic 35.0%
AGCTAAAACCAAACTAGTGT+TGG - Chr1:1618919-1618938 None:intergenic 35.0%
ATCATGGCTTCTATTGCTTT+AGG + Chr1:1620830-1620849 MsG0180000111.01.T01:CDS 35.0%
ATGGGAACATGTTGTAATAG+TGG + Chr1:1621686-1621705 MsG0180000111.01.T01:three_prime_UTR 35.0%
CAATGATGTTCCTATAGACA+GGG - Chr1:1619177-1619196 None:intergenic 35.0%
CATATGGGACTAATTTCACA+AGG - Chr1:1621737-1621756 None:intergenic 35.0%
CCAAGAAATAAGCAAATGGA+AGG - Chr1:1619213-1619232 None:intergenic 35.0%
CCAAGTAGTCACTTAAATAG+TGG + Chr1:1620291-1620310 MsG0180000111.01.T01:CDS 35.0%
CCACTATTTAAGTGACTACT+TGG - Chr1:1620294-1620313 None:intergenic 35.0%
CTAACTAACCGCGTATAAAA+TGG - Chr1:1620619-1620638 None:intergenic 35.0%
CTAAGTTCTCACCCTAAATT+AGG - Chr1:1621198-1621217 None:intergenic 35.0%
GAGTCCAAAGAAACATGTAT+AGG - Chr1:1620517-1620536 None:intergenic 35.0%
GCTACAACAAAAGTTTGAAC+AGG - Chr1:1620809-1620828 None:intergenic 35.0%
GTGATGCAAAGGGAAAAAAT+TGG + Chr1:1620385-1620404 MsG0180000111.01.T01:CDS 35.0%
TAAAGCAATAGAAGCCATGA+TGG - Chr1:1620831-1620850 None:intergenic 35.0%
TAAGTGCGAGAAAAAAGAAC+TGG - Chr1:1619726-1619745 None:intergenic 35.0%
TAGCTAGGCCTCAATTAAAT+TGG + Chr1:1618934-1618953 MsG0180000111.01.T01:five_prime_UTR 35.0%
TCTGTTGAAGAAGATAGGAA+TGG - Chr1:1621527-1621546 None:intergenic 35.0%
TGGACTATACTTTGTGTTGT+GGG + Chr1:1621394-1621413 MsG0180000111.01.T01:CDS 35.0%
TTAGGAGAAGAGTTCTACTT+GGG + Chr1:1620848-1620867 MsG0180000111.01.T01:CDS 35.0%
TTATGTAATGATACCGCCTT+CGG + Chr1:1620994-1621013 MsG0180000111.01.T01:intron 35.0%
TTTAGGAGAAGAGTTCTACT+TGG + Chr1:1620847-1620866 MsG0180000111.01.T01:CDS 35.0%
! AGCTTTCACCATTTTATACG+CGG + Chr1:1620608-1620627 MsG0180000111.01.T01:CDS 35.0%
! CAAATATGGTGCATTGATAG+AGG + Chr1:1620755-1620774 MsG0180000111.01.T01:CDS 35.0%
! CCTTCCATTTGCTTATTTCT+TGG + Chr1:1619210-1619229 MsG0180000111.01.T01:CDS 35.0%
! CTTTTCCTTTTTGTTCAGGA+AGG + Chr1:1619669-1619688 MsG0180000111.01.T01:intron 35.0%
! TAGTGGATGTCACTAAAAGT+GGG + Chr1:1621703-1621722 MsG0180000111.01.T01:three_prime_UTR 35.0%
!! AACTTGTTTTCCCTGTCTAT+AGG + Chr1:1619164-1619183 MsG0180000111.01.T01:CDS 35.0%
!! AACTTTTGTTGTAGCCATCA+TGG + Chr1:1620814-1620833 MsG0180000111.01.T01:CDS 35.0%
!! ATAGTGGATGTCACTAAAAG+TGG + Chr1:1621702-1621721 MsG0180000111.01.T01:three_prime_UTR 35.0%
!! CGTTTAGTTCCCATTTTAAC+AGG + Chr1:1619466-1619485 MsG0180000111.01.T01:intron 35.0%
!! GGTTTTTGAAAGAAATGCTC+AGG + Chr1:1620560-1620579 MsG0180000111.01.T01:CDS 35.0%
!!! ACACTAGTTTGGTTTTAGCT+AGG + Chr1:1618919-1618938 MsG0180000111.01.T01:five_prime_UTR 35.0%
AGGTTTCTATTTGCTTGGGT+TGG + Chr1:1619980-1619999 MsG0180000111.01.T01:CDS 40.0%
AGTGGATGTCACTAAAAGTG+GGG + Chr1:1621704-1621723 MsG0180000111.01.T01:three_prime_UTR 40.0%
ATTGTTTGTCTTGGTCTGCT+TGG + Chr1:1620436-1620455 MsG0180000111.01.T01:CDS 40.0%
CACACAAGCATGGTACTATA+AGG - Chr1:1621585-1621604 None:intergenic 40.0%
CCATGAGAAATGTAATGGCA+GGG - Chr1:1620049-1620068 None:intergenic 40.0%
CTGGACTATACTTTGTGTTG+TGG + Chr1:1621393-1621412 MsG0180000111.01.T01:CDS 40.0%
GACTAATTTCACAAGGCTCT+AGG - Chr1:1621730-1621749 None:intergenic 40.0%
GACTGCCATGAGAAATGTAA+TGG - Chr1:1620054-1620073 None:intergenic 40.0%
GATGGAATTGCTAAAGTAGC+AGG + Chr1:1620204-1620223 MsG0180000111.01.T01:CDS 40.0%
GCAATGATGTTCCTATAGAC+AGG - Chr1:1619178-1619197 None:intergenic 40.0%
GGACTATACTTTGTGTTGTG+GGG + Chr1:1621395-1621414 MsG0180000111.01.T01:CDS 40.0%
GTATTGCTGATGCAAAGGTA+GGG - Chr1:1620016-1620035 None:intergenic 40.0%
GTGAGACTGAATCGAAAAGA+TGG + Chr1:1620186-1620205 MsG0180000111.01.T01:CDS 40.0%
GTTAGTTAGCCACGACTATT+AGG + Chr1:1620630-1620649 MsG0180000111.01.T01:intron 40.0%
GTTCTGTATTGCTGATGCAA+AGG - Chr1:1620021-1620040 None:intergenic 40.0%
TATCACAACACACACAAGCA+TGG - Chr1:1621595-1621614 None:intergenic 40.0%
TATTGCTGATGCAAAGGTAG+GGG - Chr1:1620015-1620034 None:intergenic 40.0%
TCAAGAGCTGCACTTAACAT+GGG + Chr1:1619133-1619152 MsG0180000111.01.T01:CDS 40.0%
TCTGTCCTTCCTGAACAAAA+AGG - Chr1:1619677-1619696 None:intergenic 40.0%
TGAAAAGTTTCAGCTGCATG+TGG + Chr1:1619066-1619085 MsG0180000111.01.T01:CDS 40.0%
TGATACACTGCAACAAACAC+TGG - Chr1:1620785-1620804 None:intergenic 40.0%
TGTATTGCTGATGCAAAGGT+AGG - Chr1:1620017-1620036 None:intergenic 40.0%
TTCAAGAGCTGCACTTAACA+TGG + Chr1:1619132-1619151 MsG0180000111.01.T01:CDS 40.0%
TTCTCATGGCAGTCATACTA+AGG + Chr1:1620060-1620079 MsG0180000111.01.T01:CDS 40.0%
TTGAAAGAAATGCTCAGGCT+TGG + Chr1:1620565-1620584 MsG0180000111.01.T01:CDS 40.0%
! ACATGCAGCTGAAACTTTTC+AGG - Chr1:1619067-1619086 None:intergenic 40.0%
! ATATGGTGCATTGATAGAGG+AGG + Chr1:1620758-1620777 MsG0180000111.01.T01:CDS 40.0%
! CAGCTTCTTCTAAGAGAATG+TGG + Chr1:1619032-1619051 MsG0180000111.01.T01:CDS 40.0%
! CATGCAGCTGAAACTTTTCA+GGG - Chr1:1619066-1619085 None:intergenic 40.0%
!! AATGTCACTTGGTGATGCAA+AGG + Chr1:1620374-1620393 MsG0180000111.01.T01:CDS 40.0%
!! AATTAATTTGCAGGGAGTGG+TGG + Chr1:1620709-1620728 MsG0180000111.01.T01:intron 40.0%
!! ATGTCACTTGGTGATGCAAA+GGG + Chr1:1620375-1620394 MsG0180000111.01.T01:CDS 40.0%
!!! GATTTTGGGACAATGTCACT+TGG + Chr1:1620363-1620382 MsG0180000111.01.T01:CDS 40.0%
AACCAGCATAACCAAACTGC+AGG - Chr1:1619102-1619121 None:intergenic 45.0%
ACCAGCATAACCAAACTGCA+GGG - Chr1:1619101-1619120 None:intergenic 45.0%
ACTTTAGGTCATTCCGAAGG+CGG - Chr1:1621010-1621029 None:intergenic 45.0%
AGCAAAAGAAAGGTGGGAAG+TGG - Chr1:1618890-1618909 None:intergenic 45.0%
CCCTGCCATTACATTTCTCA+TGG + Chr1:1620046-1620065 MsG0180000111.01.T01:CDS 45.0%
CGAGAAAAAAGAACTGGCAG+AGG - Chr1:1619720-1619739 None:intergenic 45.0%
CTCACTTTAGGTCATTCCGA+AGG - Chr1:1621013-1621032 None:intergenic 45.0%
GACGAGCAGGATACTTCTTA+AGG - Chr1:1620482-1620501 None:intergenic 45.0%
GCAGGATACTTCTTAAGGAC+AGG - Chr1:1620477-1620496 None:intergenic 45.0%
GCCATGAGAAATGTAATGGC+AGG - Chr1:1620050-1620069 None:intergenic 45.0%
GTGCAGCTCTTGAAACAACA+TGG - Chr1:1619126-1619145 None:intergenic 45.0%
! CAGGCTTGGATTTTTCACTC+TGG + Chr1:1620579-1620598 MsG0180000111.01.T01:CDS 45.0%
! GCTTGGATTTTTCACTCTGG+TGG + Chr1:1620582-1620601 MsG0180000111.01.T01:CDS 45.0%
!! AAAAAAAAAAAAAAACTTTA+TGG - Chr1:1619318-1619337 None:intergenic 5.0%
!!! ATAATTTTAACAATTAATAT+AGG - Chr1:1619570-1619589 None:intergenic 5.0%
!!! CTTTAATTAATAATTTTTTA+TGG - Chr1:1619421-1619440 None:intergenic 5.0%
!!! TAATTTTAACAATTAATATA+GGG - Chr1:1619569-1619588 None:intergenic 5.0%
!!! TTATTTTTACTTTATTTTAT+GGG + Chr1:1621668-1621687 MsG0180000111.01.T01:three_prime_UTR 5.0%
!!! TTTATTTTTACTTTATTTTA+TGG + Chr1:1621667-1621686 MsG0180000111.01.T01:three_prime_UTR 5.0%
GAAGTGACAGAAAGACGAGC+AGG - Chr1:1620495-1620514 None:intergenic 50.0%
GAGAAGAGTTCTACTTGGGC+GGG + Chr1:1620852-1620871 MsG0180000111.01.T01:CDS 50.0%
GAGTGAGTGATGCTTTAGCG+TGG - Chr1:1621502-1621521 None:intergenic 50.0%
GGAGAAGAGTTCTACTTGGG+CGG + Chr1:1620851-1620870 MsG0180000111.01.T01:CDS 50.0%
TGATGCTTTAGCGTGGCTTG+CGG - Chr1:1621495-1621514 None:intergenic 50.0%
!! GGTGCAGTGTTGATAGTAGC+TGG + Chr1:1621374-1621393 MsG0180000111.01.T01:CDS 50.0%
ACCAAACTGCAGGGCCAACA+TGG - Chr1:1619092-1619111 None:intergenic 55.0%
GCCCTGCAGTTTGGTTATGC+TGG + Chr1:1619097-1619116 MsG0180000111.01.T01:CDS 55.0%
TCAGCTGCATGTGGCCATGT+TGG + Chr1:1619075-1619094 MsG0180000111.01.T01:CDS 55.0%
! GATGCTTTAGCGTGGCTTGC+GGG - Chr1:1621494-1621513 None:intergenic 55.0%
GCCATGTTGGCCCTGCAGTT+TGG + Chr1:1619088-1619107 MsG0180000111.01.T01:CDS 60.0%
TTGCAGGGAGTGGTGGCATC+TGG + Chr1:1620716-1620735 MsG0180000111.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 1618886 1621839 1618886 ID=MsG0180000111.01;Name=MsG0180000111.01
Chr1 mRNA 1618886 1621839 1618886 ID=MsG0180000111.01.T01;Parent=MsG0180000111.01;Name=MsG0180000111.01.T01;_AED=0.24;_eAED=0.24;_QI=130|1|1|1|0.6|0.83|6|283|398
Chr1 exon 1621367 1621839 1621367 ID=MsG0180000111.01.T01:exon:7211;Parent=MsG0180000111.01.T01
Chr1 exon 1620722 1620873 1620722 ID=MsG0180000111.01.T01:exon:7210;Parent=MsG0180000111.01.T01
Chr1 exon 1620176 1620629 1620176 ID=MsG0180000111.01.T01:exon:7209;Parent=MsG0180000111.01.T01
Chr1 exon 1619965 1620081 1619965 ID=MsG0180000111.01.T01:exon:7208;Parent=MsG0180000111.01.T01
Chr1 exon 1619687 1619749 1619687 ID=MsG0180000111.01.T01:exon:7207;Parent=MsG0180000111.01.T01
Chr1 five_prime_UTR 1618886 1619015 1618886 ID=MsG0180000111.01.T01:five_prime_utr;Parent=MsG0180000111.01.T01
Chr1 CDS 1619016 1619236 1619016 ID=MsG0180000111.01.T01:cds;Parent=MsG0180000111.01.T01
Chr1 CDS 1619687 1619749 1619687 ID=MsG0180000111.01.T01:cds;Parent=MsG0180000111.01.T01
Chr1 CDS 1619965 1620081 1619965 ID=MsG0180000111.01.T01:cds;Parent=MsG0180000111.01.T01
Chr1 CDS 1620176 1620629 1620176 ID=MsG0180000111.01.T01:cds;Parent=MsG0180000111.01.T01
Chr1 CDS 1620722 1620873 1620722 ID=MsG0180000111.01.T01:cds;Parent=MsG0180000111.01.T01
Chr1 CDS 1621367 1621556 1621367 ID=MsG0180000111.01.T01:cds;Parent=MsG0180000111.01.T01
Chr1 three_prime_UTR 1621557 1621839 1621557 ID=MsG0180000111.01.T01:three_prime_utr;Parent=MsG0180000111.01.T01
Chr1 mRNA 1618886 1619759 1618886 ID=MsG0180000111.01.T02;Parent=MsG0180000111.01;Name=MsG0180000111.01.T02;_AED=0.43;_eAED=0.44;_QI=130|1|0.5|1|1|1|2|0|97
Chr1 exon 1619687 1619759 1619687 ID=MsG0180000111.01.T02:exon:7212;Parent=MsG0180000111.01.T02
Chr1 five_prime_UTR 1618886 1619015 1618886 ID=MsG0180000111.01.T02:five_prime_utr;Parent=MsG0180000111.01.T02
Chr1 CDS 1619016 1619236 1619016 ID=MsG0180000111.01.T02:cds;Parent=MsG0180000111.01.T02
Chr1 CDS 1619687 1619759 1619687 ID=MsG0180000111.01.T02:cds;Parent=MsG0180000111.01.T02
Gene Sequence

>MsG0180000111.01.T02

ATGGCTGATTTAGGTTCAGCTTCTTCTAAGAGAATGTGGTGTTCTATCCCTGAAAAGTTTCAGCTGCATGTGGCCATGTTGGCCCTGCAGTTTGGTTATGCTGGTTTCCATGTTGTTTCAAGAGCTGCACTTAACATGGGAGTTAGCAAACTTGTTTTCCCTGTCTATAGGAACATCATTGCTTTGCTTCTCCTCCTTCCATTTGCTTATTTCTTGGAAAAGAAGGACAGACCACCGATTAATTTAAACTTCCTCTGCCAGTTCTTTTTTCTCGCACTTATTGGGTATGTATAA

>MsG0180000111.01.T01

ATGGCTGATTTAGGTTCAGCTTCTTCTAAGAGAATGTGGTGTTCTATCCCTGAAAAGTTTCAGCTGCATGTGGCCATGTTGGCCCTGCAGTTTGGTTATGCTGGTTTCCATGTTGTTTCAAGAGCTGCACTTAACATGGGAGTTAGCAAACTTGTTTTCCCTGTCTATAGGAACATCATTGCTTTGCTTCTCCTCCTTCCATTTGCTTATTTCTTGGAAAAGAAGGACAGACCACCGATTAATTTAAACTTCCTCTGCCAGTTCTTTTTTCTCGCACTTATTGGGATTACAGCAAATCAAGGTTTCTATTTGCTTGGGTTGGATAACACATCCCCTACCTTTGCATCAGCAATACAGAACTCTGTCCCTGCCATTACATTTCTCATGGCAGTCATACTAAGGATAGAGCAAGTGAGACTGAATCGAAAAGATGGAATTGCTAAAGTAGCAGGAACAATATTTTGTGTAATTGGTGCATCAGTGATTACATTATATCAAGGACCAACTATATATAGTCCAAGTAGTCACTTAAATAGTGGCACAAGCACAACAATAATAACAGAAGTAACAACAACAGTACCAATGATTGATTTTGGGACAATGTCACTTGGTGATGCAAAGGGAAAAAATTGGACACTTGGATGTCTTTATCTAATTGGACATTGTTTGTCTTGGTCTGCTTGGCTTGTGTTTCAAGCACCTGTCCTTAAGAAGTATCCTGCTCGTCTTTCTGTCACTTCCTATACATGTTTCTTTGGACTCTTGCAATTTCTTCTTATTGCTTTGGTTTTTGAAAGAAATGCTCAGGCTTGGATTTTTCACTCTGGTGGCGAAGCTTTCACCATTTTATACGCGGGAGTGGTGGCATCTGGAATTGCATTTGCAGTACAAATATGGTGCATTGATAGAGGAGGTCCAGTGTTTGTTGCAGTGTATCAACCTGTTCAAACTTTTGTTGTAGCCATCATGGCTTCTATTGCTTTAGGAGAAGAGTTCTACTTGGGCGGGATCATTGGTGCAGTGTTGATAGTAGCTGGACTATACTTTGTGTTGTGGGGTAAAAGTGAAGAGAAGAAATTATTTGCAAAGGAACAGCTTGCAATTGCATCAACAGAACATAGCATCATTAGACCCGCAAGCCACGCTAAAGCATCACTCACTCAACCATTCCTATCTTCTTCAACAGAAAATGTTTGA

Protein sequence

>MsG0180000111.01.T02

MADLGSASSKRMWCSIPEKFQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKDRPPINLNFLCQFFFLALIGYV*

>MsG0180000111.01.T01

MADLGSASSKRMWCSIPEKFQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKDRPPINLNFLCQFFFLALIGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVILRIEQVRLNRKDGIAKVAGTIFCVIGASVITLYQGPTIYSPSSHLNSGTSTTIITEVTTTVPMIDFGTMSLGDAKGKNWTLGCLYLIGHCLSWSAWLVFQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVFERNAQAWIFHSGGEAFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGIIGAVLIVAGLYFVLWGKSEEKKLFAKEQLAIASTEHSIIRPASHAKASLTQPFLSSSTENV*