AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023865.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023865.01.T01 MTR_8g103840 96.154 234 4 3 14 243 1 233 5.80e-159 452
MsG0480023865.01.T01 MTR_8g103840 75.524 143 13 1 233 375 294 414 1.40e-62 206
MsG0480023865.01.T01 MTR_8g103840 89.796 196 16 2 52 243 1 196 6.33e-125 365
MsG0480023865.01.T01 MTR_8g103840 75.524 143 13 1 233 375 257 377 4.88e-63 206
MsG0480023865.01.T01 MTR_8g103840 100.000 119 0 0 125 243 1 119 5.98e-82 252
MsG0480023865.01.T01 MTR_8g103840 75.524 143 13 1 233 375 180 300 6.51e-64 206
MsG0480023865.01.T01 MTR_8g103840 86.364 132 14 2 116 243 4 135 8.98e-75 234
MsG0480023865.01.T01 MTR_8g103840 75.524 143 13 1 233 375 196 316 8.82e-64 206
MsG0480023865.01.T01 MTR_8g103840 75.524 143 13 1 233 375 148 268 2.88e-64 206
MsG0480023865.01.T01 MTR_8g103840 100.000 87 0 0 157 243 1 87 2.00e-56 186
MsG0480023865.01.T01 MTR_8g010580 32.329 365 158 10 68 369 22 360 1.61e-41 150
MsG0480023865.01.T01 MTR_8g010580 42.857 175 93 4 68 239 22 192 1.31e-36 135
MsG0480023865.01.T01 MTR_8g010580 42.857 175 93 4 68 239 22 192 2.19e-36 135
MsG0480023865.01.T01 MTR_1g014040 28.056 360 166 10 71 365 58 389 9.81e-34 129
MsG0480023865.01.T01 MTR_8g005990 30.189 371 167 13 61 366 40 383 7.11e-33 127
MsG0480023865.01.T01 MTR_3g046330 28.818 347 198 11 66 370 21 360 5.89e-32 124
MsG0480023865.01.T01 MTR_8g005990 29.111 371 148 13 61 366 40 360 5.54e-26 107
MsG0480023865.01.T01 MTR_4g100350 26.396 197 139 4 49 242 34 227 1.82e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023865.01.T01 AT3G24360 73.303 221 51 1 31 243 13 233 3.12e-116 344
MsG0480023865.01.T01 AT3G24360 57.576 132 34 1 244 375 305 414 7.53e-40 146
MsG0480023865.01.T01 AT3G24360 69.778 225 56 2 31 243 13 237 2.19e-109 324
MsG0480023865.01.T01 AT3G24360 69.778 225 56 2 31 243 13 237 8.91e-109 325
MsG0480023865.01.T01 AT3G24360 57.576 132 34 1 244 375 309 418 7.01e-40 146
MsG0480023865.01.T01 AT4G13360 71.498 207 51 2 47 245 36 242 2.94e-103 311
MsG0480023865.01.T01 AT4G13360 60.606 132 30 1 244 375 312 421 4.77e-42 152
MsG0480023865.01.T01 AT3G24360 76.515 132 27 1 116 243 4 135 3.24e-68 218
MsG0480023865.01.T01 AT3G24360 57.576 132 34 1 244 375 207 316 6.50e-41 147
MsG0480023865.01.T01 AT3G24360 83.929 112 18 0 132 243 1 112 7.69e-67 213
MsG0480023865.01.T01 AT3G24360 57.576 132 34 1 244 375 184 293 4.89e-41 146
MsG0480023865.01.T01 AT3G24360 80.172 116 23 0 128 243 18 133 3.98e-66 212
MsG0480023865.01.T01 AT3G24360 57.576 132 34 1 244 375 205 314 7.56e-41 146
MsG0480023865.01.T01 AT2G30660 32.231 363 157 10 64 363 13 349 5.22e-47 164
MsG0480023865.01.T01 AT2G30650 33.062 369 158 10 66 371 15 357 9.64e-46 161
MsG0480023865.01.T01 AT5G65940 34.104 346 181 13 66 369 19 359 7.96e-44 156
MsG0480023865.01.T01 AT5G65940 34.104 346 181 13 66 369 19 359 7.96e-44 156
MsG0480023865.01.T01 AT2G30660 31.928 332 137 10 95 363 12 317 2.62e-40 146
MsG0480023865.01.T01 AT5G65940 43.316 187 99 4 66 249 19 201 4.07e-40 145
MsG0480023865.01.T01 AT5G65940 43.316 187 99 4 66 249 19 201 1.27e-39 144
MsG0480023865.01.T01 AT2G30650 43.169 183 97 4 66 245 15 193 3.04e-38 140
MsG0480023865.01.T01 AT1G06550 32.464 345 176 14 66 364 21 354 3.73e-34 130
MsG0480023865.01.T01 AT3G60510 29.526 359 164 10 71 366 52 384 2.02e-29 117
MsG0480023865.01.T01 AT4G31810 28.969 359 164 13 71 365 56 387 7.16e-29 116
MsG0480023865.01.T01 AT3G60510 39.884 173 97 4 71 240 52 220 1.98e-28 113
MsG0480023865.01.T01 AT3G60510 39.884 173 97 4 71 240 52 220 1.13e-27 113
MsG0480023865.01.T01 AT4G16800 27.727 220 146 7 55 268 41 253 5.75e-12 66.2

Find 111 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAGAAAGGTTTGATTT+TGG 0.204953 4:-90656476 None:intergenic
ACCTTGATGGTTTCCACTTT+GGG 0.233100 4:-90660705 None:intergenic
TTCATGGCGTTGAGAGCTTT+GGG 0.269255 4:-90656583 None:intergenic
GTTCTTGCAATGCCAGAAAA+TGG 0.288824 4:+90658428 MsG0480023865.01.T01:CDS
CCATCCATGAAACTTATATA+TGG 0.298685 4:-90658227 None:intergenic
GTTCATGGCGTTGAGAGCTT+TGG 0.301149 4:-90656584 None:intergenic
TTCTTCAGCCATTGAAGAAA+TGG 0.307356 4:-90656506 None:intergenic
ACCAGAACACATTTGACATT+TGG 0.311682 4:-90657004 None:intergenic
GATGGAATAACAATGGGTTT+TGG 0.315013 4:+90658245 MsG0480023865.01.T01:CDS
TCTTATGTTTAGTTACATTT+AGG 0.316615 4:-90656334 None:intergenic
CTGACTGCAGGTGCTTATCT+TGG 0.324350 4:+90658794 MsG0480023865.01.T01:intron
CTGCGACATGATTTCGTAGA+AGG 0.333713 4:+90659859 MsG0480023865.01.T01:CDS
AACCTTGATGGTTTCCACTT+TGG 0.340812 4:-90660706 None:intergenic
CCAGAACACATTTGACATTT+GGG 0.350947 4:-90657003 None:intergenic
CTCGCCCACCTCTGCTCCTA+AGG 0.358294 4:-90660770 None:intergenic
TTTCCGACCCATTTCTTCAA+TGG 0.359939 4:+90656498 MsG0480023865.01.T01:CDS
TCAACTTCCTCCAACCTTGA+TGG 0.368546 4:-90660718 None:intergenic
AGTACTTGTTTGTCAAGAAA+AGG 0.372402 4:-90659637 None:intergenic
AAAACCATAAGATAAAATTA+AGG 0.383164 4:-90661013 None:intergenic
ATATGAGCAAATCCTACATC+TGG 0.391243 4:-90658464 None:intergenic
ATCATGATAAATAAAATTCA+TGG 0.398249 4:+90660920 MsG0480023865.01.T01:three_prime_UTR
GAAACCATATATAAGTTTCA+TGG 0.401334 4:+90658223 MsG0480023865.01.T01:CDS
TATGTGCCATCGGGAAAGTT+AGG 0.405875 4:+90658878 MsG0480023865.01.T01:CDS
GCAATGCCAGAAAATGGAAT+TGG 0.413015 4:+90658434 MsG0480023865.01.T01:CDS
TAAAAGTTATCTTGATGAAT+GGG 0.417765 4:+90656973 MsG0480023865.01.T01:CDS
CACTTAATCAAATAAATAGA+TGG 0.426870 4:+90660855 MsG0480023865.01.T01:three_prime_UTR
GGCAACACCGTTAGAATTAA+CGG 0.431120 4:-90656542 None:intergenic
CCCAAATGTCAAATGTGTTC+TGG 0.432136 4:+90657003 MsG0480023865.01.T01:CDS
ATAAAAGTTATCTTGATGAA+TGG 0.449490 4:+90656972 MsG0480023865.01.T01:CDS
CAACCAACCAACGGCATCAC+AGG 0.449719 4:+90656374 MsG0480023865.01.T01:CDS
AAATAAGAAACCTAGGTTCA+TGG 0.454268 4:-90656599 None:intergenic
AGTATTAGTGGATAAAGATC+AGG 0.459616 4:+90659891 MsG0480023865.01.T01:CDS
CCAACATATATTGCATCTGC+TGG 0.461407 4:-90658842 None:intergenic
TTCATGGATGGAATAACAAT+GGG 0.461776 4:+90658239 MsG0480023865.01.T01:CDS
GTACTTGTTTGTCAAGAAAA+GGG 0.464988 4:-90659636 None:intergenic
TAAATAGATGGTGTTATCAT+CGG 0.468783 4:+90660867 MsG0480023865.01.T01:three_prime_UTR
GGAATTGGCTTATCTGGTCA+TGG 0.469307 4:+90658266 MsG0480023865.01.T01:CDS
GGTGCTTATCTTGGATTGAC+TGG 0.469940 4:+90658803 MsG0480023865.01.T01:intron
GATGCAATATATGTTGGCTT+AGG 0.477695 4:+90658848 MsG0480023865.01.T01:CDS
TCTATTTCTAGTTGCTGAGT+GGG 0.479340 4:+90659571 MsG0480023865.01.T01:intron
TTCATGGTCTTGAAAATCAA+AGG 0.483072 4:+90660936 MsG0480023865.01.T01:three_prime_UTR
AGACCTCAATCACATCTGAT+AGG 0.483215 4:-90657552 None:intergenic
TCTTCAGCCATTGAAGAAAT+GGG 0.483584 4:-90656505 None:intergenic
CTGTGATGCCGTTGGTTGGT+TGG 0.485232 4:-90656373 None:intergenic
AAGACGGCTTCAACCTCACT+TGG 0.485673 4:-90660742 None:intergenic
TTACCAACAGCTCCTTCTCC+TGG 0.486422 4:-90658500 None:intergenic
GCTCTCCAAGGCCTTGCAAA+AGG 0.490434 4:+90659602 MsG0480023865.01.T01:CDS
GATGCCGTTGGTTGGTTGGT+TGG 0.492104 4:-90656369 None:intergenic
TGGGGCGATCGAGGGTGAGA+AGG 0.503187 4:-90656564 None:intergenic
ATCATACATACCGGCACAAA+AGG 0.503920 4:-90657047 None:intergenic
AAATAGATGGTGTTATCATC+GGG 0.505899 4:+90660868 MsG0480023865.01.T01:three_prime_UTR
CTAGTGTGTCTGCATAGAAA+TGG 0.506685 4:+90660972 MsG0480023865.01.T01:three_prime_UTR
CATATAGCGGCTCAAAGTCC+AGG 0.508132 4:+90658482 MsG0480023865.01.T01:CDS
TCTTGGATTGACTGGAAAGA+GGG 0.508317 4:+90658811 MsG0480023865.01.T01:CDS
TCTGCCGTTGCCTCTGCACT+AGG 0.522855 4:+90659662 MsG0480023865.01.T01:CDS
ATTGGCTTGTTCCCAGATGT+AGG 0.524294 4:+90658452 MsG0480023865.01.T01:CDS
AGGTGTCCGAGCAGTATTAG+TGG 0.524429 4:+90659879 MsG0480023865.01.T01:CDS
TTTCATGGATGGAATAACAA+TGG 0.527960 4:+90658238 MsG0480023865.01.T01:CDS
ATCTTGGATTGACTGGAAAG+AGG 0.530642 4:+90658810 MsG0480023865.01.T01:CDS
CAACCTATCAGATGTGATTG+AGG 0.531270 4:+90657549 MsG0480023865.01.T01:CDS
TCATGGTCTTGAAAATCAAA+GGG 0.533136 4:+90660937 MsG0480023865.01.T01:three_prime_UTR
TTCTATTTCTAGTTGCTGAG+TGG 0.533730 4:+90659570 MsG0480023865.01.T01:intron
CAATACAAGCAACACTAGAC+AGG 0.537442 4:-90660892 None:intergenic
TGAGAGCTTTGGGGCGATCG+AGG 0.541267 4:-90656573 None:intergenic
ATGGGTCGGAAAGAGAAGAA+AGG 0.541911 4:-90656487 None:intergenic
CCAGCAGATGCAATATATGT+TGG 0.544693 4:+90658842 MsG0480023865.01.T01:CDS
GTGGAAACCATCAAGGTTGG+AGG 0.546371 4:+90660711 MsG0480023865.01.T01:CDS
GGGGCGATCGAGGGTGAGAA+GGG 0.549823 4:-90656563 None:intergenic
AAAGTGGAAACCATCAAGGT+TGG 0.553124 4:+90660708 MsG0480023865.01.T01:CDS
GAAGCCGTCTTTAAACCCTT+AGG 0.555410 4:+90660754 MsG0480023865.01.T01:CDS
TTTCCTGTGATGCCGTTGGT+TGG 0.555863 4:-90656377 None:intergenic
GAGAGCTTTGGGGCGATCGA+GGG 0.558416 4:-90656572 None:intergenic
CCTTTCCATCGAAAATTACA+CGG 0.558704 4:-90660797 None:intergenic
GGAACACACTATGTGCCATC+GGG 0.563387 4:+90658869 MsG0480023865.01.T01:CDS
ACCCAAAGTGGAAACCATCA+AGG 0.563693 4:+90660704 MsG0480023865.01.T01:CDS
GTTTGTCAAGAAAAGGGAGA+AGG 0.565056 4:-90659630 None:intergenic
CCATATATAAGTTTCATGGA+TGG 0.569201 4:+90658227 MsG0480023865.01.T01:CDS
TGCTCCTAAGGGTTTAAAGA+CGG 0.569607 4:-90660758 None:intergenic
TTTGCCTAGTGCAGAGGCAA+CGG 0.570032 4:-90659666 None:intergenic
TAAACCCTTAGGAGCAGAGG+TGG 0.570655 4:+90660765 MsG0480023865.01.T01:CDS
GCTCTCAACGCCATGAACCT+AGG 0.579390 4:+90656589 MsG0480023865.01.T01:CDS
TTTGCATATCAAAGAATACT+CGG 0.580158 4:-90658186 None:intergenic
AGGAACACACTATGTGCCAT+CGG 0.580813 4:+90658868 MsG0480023865.01.T01:CDS
CTTTATCCACTAATACTGCT+CGG 0.582905 4:-90659885 None:intergenic
TCGCCCACCTCTGCTCCTAA+GGG 0.584657 4:-90660769 None:intergenic
TCATGGCGTTGAGAGCTTTG+GGG 0.585204 4:-90656582 None:intergenic
AGTCCAGGAGAAGGAGCTGT+TGG 0.585383 4:+90658497 MsG0480023865.01.T01:CDS
ATGTCGCAGCGAAGACCTCA+AGG 0.588206 4:-90659845 None:intergenic
ATTCACTGCAGAACCCAAAG+TGG 0.590706 4:+90660692 MsG0480023865.01.T01:intron
GCGGCTCAAAGTCCAGGAGA+AGG 0.592993 4:+90658488 MsG0480023865.01.T01:CDS
TATGAGCAAATCCTACATCT+GGG 0.594751 4:-90658463 None:intergenic
TTTGTCAAGAAAAGGGAGAA+GGG 0.596278 4:-90659629 None:intergenic
CTGAGTATCGCATTGCCTTG+AGG 0.604394 4:+90659830 MsG0480023865.01.T01:CDS
ACCGGCACAAAAGGCACGAG+GGG 0.606107 4:-90657038 None:intergenic
CTTTAAACCCTTAGGAGCAG+AGG 0.606217 4:+90660762 MsG0480023865.01.T01:CDS
AATGAACCTAACTTTCCCGA+TGG 0.624467 4:-90658884 None:intergenic
CAGCCATTGAAGAAATGGGT+CGG 0.624981 4:-90656501 None:intergenic
ATGGCTGAAGAATTCGTCAA+AGG 0.630406 4:+90656517 MsG0480023865.01.T01:CDS
AAAGGCACCGTTAATTCTAA+CGG 0.635338 4:+90656535 MsG0480023865.01.T01:CDS
CTTTCCATCGAAAATTACAC+GGG 0.647825 4:-90660796 None:intergenic
AAACGACTGTGAATTATCCA+CGG 0.650353 4:+90659688 MsG0480023865.01.T01:CDS
TGGGCTAATGAAGCTCTCCA+AGG 0.651121 4:+90659590 MsG0480023865.01.T01:CDS
TGAACCAACCAACCAACCAA+CGG 0.652808 4:+90656365 MsG0480023865.01.T01:CDS
GGAGGAAGTTGATCCAAGTG+AGG 0.659499 4:+90660729 MsG0480023865.01.T01:CDS
TGTAGGATTTGCTCATATAG+CGG 0.671989 4:+90658469 MsG0480023865.01.T01:CDS
AAACCCTTAGGAGCAGAGGT+GGG 0.675531 4:+90660766 MsG0480023865.01.T01:CDS
TACCGGCACAAAAGGCACGA+GGG 0.677239 4:-90657039 None:intergenic
CCGCTATCGTATCATAACAG+AGG 0.696061 4:+90658289 MsG0480023865.01.T01:CDS
ATACCGGCACAAAAGGCACG+AGG 0.714810 4:-90657040 None:intergenic
TGTCTGCATAGAAATGGTGA+AGG 0.716368 4:+90660978 MsG0480023865.01.T01:three_prime_UTR
CCTCTGTTATGATACGATAG+CGG 0.726952 4:-90658289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAAAATATGTAAAATT+TGG + Chr4:90656729-90656748 MsG0480023865.01.T01:intron 10.0%
!! AAAACCATAAGATAAAATTA+AGG - Chr4:90661016-90661035 None:intergenic 15.0%
!! AATTACAAATGTAATCTAAT+AGG - Chr4:90657992-90658011 None:intergenic 15.0%
!! ATCATGATAAATAAAATTCA+TGG + Chr4:90660920-90660939 MsG0480023865.01.T01:three_prime_UTR 15.0%
!! ATTAGATTACATTTGTAATT+TGG + Chr4:90657992-90658011 MsG0480023865.01.T01:intron 15.0%
!! TTGTTTGAACTTATTTATAT+TGG + Chr4:90660237-90660256 MsG0480023865.01.T01:intron 15.0%
!!! ATTGATAAATTTTACTTTTG+CGG + Chr4:90660039-90660058 MsG0480023865.01.T01:intron 15.0%
!!! ATTTCCTTAATTTTATCTTA+TGG + Chr4:90661009-90661028 MsG0480023865.01.T01:three_prime_UTR 15.0%
!!! CTTCAATGTTTTAAAATAAT+TGG + Chr4:90657728-90657747 MsG0480023865.01.T01:intron 15.0%
!!! GAATTTTTAGTTAATTATGT+AGG + Chr4:90656855-90656874 MsG0480023865.01.T01:intron 15.0%
!!! TTGATTCATATTTTAATGAA+AGG + Chr4:90656758-90656777 MsG0480023865.01.T01:intron 15.0%
!!! TTTTATCGCAATTTTTTATT+TGG + Chr4:90661032-90661051 MsG0480023865.01.T01:three_prime_UTR 15.0%
!!! TTTTTTTTTTTTTGAGCAAA+AGG - Chr4:90660588-90660607 None:intergenic 15.0%
!! AAAAAAAAACATGACACATA+TGG - Chr4:90659099-90659118 None:intergenic 20.0%
!! AAATCTATCAACAACAAAAA+AGG - Chr4:90660557-90660576 None:intergenic 20.0%
!! ACAAAAAAGATGTAACTAAA+GGG - Chr4:90657926-90657945 None:intergenic 20.0%
!! ATAAAAGTTATCTTGATGAA+TGG + Chr4:90656972-90656991 MsG0480023865.01.T01:CDS 20.0%
!! CACTTAATCAAATAAATAGA+TGG + Chr4:90660855-90660874 MsG0480023865.01.T01:three_prime_UTR 20.0%
!! CTTAACTTAAGAAGTTTAAA+GGG - Chr4:90658989-90659008 None:intergenic 20.0%
!! GTTTATTCGATGATTTAATA+AGG + Chr4:90658563-90658582 MsG0480023865.01.T01:intron 20.0%
!! TAAAAGTTATCTTGATGAAT+GGG + Chr4:90656973-90656992 MsG0480023865.01.T01:CDS 20.0%
!! TAAAATATTCAAACCGAATT+CGG - Chr4:90658774-90658793 None:intergenic 20.0%
!! TCTTAACTTAAGAAGTTTAA+AGG - Chr4:90658990-90659009 None:intergenic 20.0%
!! TCTTATGTTTAGTTACATTT+AGG - Chr4:90656337-90656356 None:intergenic 20.0%
!! TTCTTAAGTTAAGATTGAAT+TGG + Chr4:90658996-90659015 MsG0480023865.01.T01:intron 20.0%
!!! AAAAATATGGTGATAATGAT+AGG - Chr4:90659447-90659466 None:intergenic 20.0%
!!! AAAAGGTATTCATTTTGAAT+TGG - Chr4:90657639-90657658 None:intergenic 20.0%
!!! GTTATGTTTTGTTCAATATT+TGG + Chr4:90660636-90660655 MsG0480023865.01.T01:intron 20.0%
!!! TATGAGTATAAAAGCATAAA+CGG - Chr4:90660114-90660133 None:intergenic 20.0%
!!! TTGGTAATAAACAGTTATTA+AGG + Chr4:90657747-90657766 MsG0480023865.01.T01:intron 20.0%
! AACACTCATTAAAATCATGT+TGG - Chr4:90659767-90659786 None:intergenic 25.0%
! ACAAAAAAGGATTTGTACAA+AGG - Chr4:90660544-90660563 None:intergenic 25.0%
! ACTATTAAAACATCTAGATG+TGG + Chr4:90658671-90658690 MsG0480023865.01.T01:intron 25.0%
! ATCACCAAAAAAAAAGGAAA+AGG - Chr4:90659724-90659743 None:intergenic 25.0%
! ATGAAAGGTTAAGAATTTGA+TGG - Chr4:90657602-90657621 None:intergenic 25.0%
! ATTGAACAAAACATAACTGT+GGG - Chr4:90660633-90660652 None:intergenic 25.0%
! GAAACCATATATAAGTTTCA+TGG + Chr4:90658223-90658242 MsG0480023865.01.T01:CDS 25.0%
! GACAAAAAAGATGTAACTAA+AGG - Chr4:90657927-90657946 None:intergenic 25.0%
! GCTAATAATATCTACACAAA+AGG - Chr4:90657656-90657675 None:intergenic 25.0%
! TAAAATCATGTTGGAAAACA+TGG - Chr4:90659758-90659777 None:intergenic 25.0%
! TATGAAAATAGTGCACAAAA+AGG - Chr4:90658625-90658644 None:intergenic 25.0%
! TATTGAACAAAACATAACTG+TGG - Chr4:90660634-90660653 None:intergenic 25.0%
! TGAATGAAAATAAGAAACCT+AGG - Chr4:90656609-90656628 None:intergenic 25.0%
! TTCAGTGTAAGCAAAAAATA+TGG - Chr4:90659460-90659479 None:intergenic 25.0%
! TTTGCATATCAAAGAATACT+CGG - Chr4:90658189-90658208 None:intergenic 25.0%
!! ATGAGTATAAAAGCATAAAC+GGG - Chr4:90660113-90660132 None:intergenic 25.0%
!! GCATGGTTTTTATAAATGAA+AGG - Chr4:90657617-90657636 None:intergenic 25.0%
!! TTTTATTAACACATTTCCAG+AGG + Chr4:90658402-90658421 MsG0480023865.01.T01:intron 25.0%
!!! AACAGCTTATTAGTTTTCAT+AGG + Chr4:90658709-90658728 MsG0480023865.01.T01:intron 25.0%
!!! TAAATAGATGGTGTTATCAT+CGG + Chr4:90660867-90660886 MsG0480023865.01.T01:three_prime_UTR 25.0%
!!! TTTTCATAGGTTTTGTTGAA+AGG + Chr4:90658722-90658741 MsG0480023865.01.T01:intron 25.0%
!!! TTTTCCTTTTTTTTTGGTGA+TGG + Chr4:90659723-90659742 MsG0480023865.01.T01:intron 25.0%
!!! TTTTGATTTGGAAATCTTTG+TGG + Chr4:90656929-90656948 MsG0480023865.01.T01:intron 25.0%
AAAAGACTCGAGCAATTTAA+AGG - Chr4:90658952-90658971 None:intergenic 30.0%
AAATAAGAAACCTAGGTTCA+TGG - Chr4:90656602-90656621 None:intergenic 30.0%
AACTTAAGAAGTTTAAAGGG+TGG - Chr4:90658986-90659005 None:intergenic 30.0%
AAGCATGTAAAAAATGCAAC+TGG - Chr4:90657341-90657360 None:intergenic 30.0%
AAGTTATCCTCAAAAGCTTA+TGG - Chr4:90660328-90660347 None:intergenic 30.0%
AATCTATCTGCATATATTGG+GGG + Chr4:90660494-90660513 MsG0480023865.01.T01:intron 30.0%
AATGCAGGTATGGATATTAA+AGG + Chr4:90657231-90657250 MsG0480023865.01.T01:intron 30.0%
ACATGCATGCAGAAAATTAT+TGG + Chr4:90659999-90660018 MsG0480023865.01.T01:intron 30.0%
ACCAATCTATCTGCATATAT+TGG + Chr4:90660491-90660510 MsG0480023865.01.T01:intron 30.0%
ACGATCTTACACAAAACTAT+TGG + Chr4:90659231-90659250 MsG0480023865.01.T01:intron 30.0%
AGTACTTGTTTGTCAAGAAA+AGG - Chr4:90659640-90659659 None:intergenic 30.0%
ATCACCATCACCAAAAAAAA+AGG - Chr4:90659730-90659749 None:intergenic 30.0%
ATCTGTTATTGAAATCATCG+AGG + Chr4:90659382-90659401 MsG0480023865.01.T01:intron 30.0%
ATGCAGGTATGGATATTAAA+GGG + Chr4:90657232-90657251 MsG0480023865.01.T01:intron 30.0%
ATTAAGCAACTATACTACAG+CGG - Chr4:90658320-90658339 None:intergenic 30.0%
CAATCTATCTGCATATATTG+GGG + Chr4:90660493-90660512 MsG0480023865.01.T01:intron 30.0%
CCAAATGAAGAAATTATCTC+AGG - Chr4:90659353-90659372 None:intergenic 30.0%
CCAATCTATCTGCATATATT+GGG + Chr4:90660492-90660511 MsG0480023865.01.T01:intron 30.0%
CCATATATAAGTTTCATGGA+TGG + Chr4:90658227-90658246 MsG0480023865.01.T01:CDS 30.0%
CCATCCATGAAACTTATATA+TGG - Chr4:90658230-90658249 None:intergenic 30.0%
CCTAAAATATGCAGCATAAT+AGG - Chr4:90658157-90658176 None:intergenic 30.0%
CCTGAGATAATTTCTTCATT+TGG + Chr4:90659350-90659369 MsG0480023865.01.T01:intron 30.0%
GAGATAATTTCTTCATTTGG+AGG + Chr4:90659353-90659372 MsG0480023865.01.T01:intron 30.0%
GATGATTTAATAAGGACTGA+GGG + Chr4:90658571-90658590 MsG0480023865.01.T01:intron 30.0%
GTACTTGTTTGTCAAGAAAA+GGG - Chr4:90659639-90659658 None:intergenic 30.0%
TATGACTCAATCATACATAC+CGG - Chr4:90657059-90657078 None:intergenic 30.0%
TCTGACTGATTATTGTCATA+AGG + Chr4:90656701-90656720 MsG0480023865.01.T01:intron 30.0%
TTAAATATGCAACTCTTGCT+CGG + Chr4:90657806-90657825 MsG0480023865.01.T01:intron 30.0%
TTCATGGATGGAATAACAAT+GGG + Chr4:90658239-90658258 MsG0480023865.01.T01:CDS 30.0%
TTGCAGATGTTCTACTTATT+TGG + Chr4:90657165-90657184 MsG0480023865.01.T01:intron 30.0%
TTTCATGGATGGAATAACAA+TGG + Chr4:90658238-90658257 MsG0480023865.01.T01:CDS 30.0%
! AGTATTAGTGGATAAAGATC+AGG + Chr4:90659891-90659910 MsG0480023865.01.T01:CDS 30.0%
! CATATTTCCATAAGCTTTTG+AGG + Chr4:90660318-90660337 MsG0480023865.01.T01:intron 30.0%
! CCTATTATGCTGCATATTTT+AGG + Chr4:90658154-90658173 MsG0480023865.01.T01:intron 30.0%
! GGTTCCTTTTCCTTTTTTTT+TGG + Chr4:90659717-90659736 MsG0480023865.01.T01:intron 30.0%
! GTATTCATTTTGAATTGGCA+TGG - Chr4:90657634-90657653 None:intergenic 30.0%
! TCATGGTCTTGAAAATCAAA+GGG + Chr4:90660937-90660956 MsG0480023865.01.T01:three_prime_UTR 30.0%
! TGAGTATAAAAGCATAAACG+GGG - Chr4:90660112-90660131 None:intergenic 30.0%
! TTAGGCTTAAATGCACTTTT+TGG - Chr4:90656319-90656338 None:intergenic 30.0%
! TTCATGGTCTTGAAAATCAA+AGG + Chr4:90660936-90660955 MsG0480023865.01.T01:three_prime_UTR 30.0%
! TTTTGCACAAGTTGTTAAAG+TGG + Chr4:90658114-90658133 MsG0480023865.01.T01:intron 30.0%
!! AAATAGATGGTGTTATCATC+GGG + Chr4:90660868-90660887 MsG0480023865.01.T01:three_prime_UTR 30.0%
!! AGAGAAGAAAGGTTTGATTT+TGG - Chr4:90656479-90656498 None:intergenic 30.0%
!! ATACAAGTTTGTTGCCAAAA+GGG - Chr4:90658918-90658937 None:intergenic 30.0%
!! CTATTGGTTATTTAGTTCTC+AGG + Chr4:90659247-90659266 MsG0480023865.01.T01:intron 30.0%
!! TAGGTGTTGATTGTTTATCA+TGG + Chr4:90656792-90656811 MsG0480023865.01.T01:intron 30.0%
!! TTGAATATTTTACTGACTGC+AGG + Chr4:90658782-90658801 MsG0480023865.01.T01:intron 30.0%
!!! ATAACAATGGGTTTTGGAAT+TGG + Chr4:90658251-90658270 MsG0480023865.01.T01:CDS 30.0%
!!! GCATTTTTTACATGCTTCAT+TGG + Chr4:90657344-90657363 MsG0480023865.01.T01:intron 30.0%
!!! TCTACTTATTTGGTTTTGAG+TGG + Chr4:90657175-90657194 MsG0480023865.01.T01:intron 30.0%
!!! TTGTTGGCTTGATTTTGATT+TGG + Chr4:90656917-90656936 MsG0480023865.01.T01:intron 30.0%
AAAAGACATCATGCTGACAA+TGG - Chr4:90657703-90657722 None:intergenic 35.0%
AAACGACTGTGAATTATCCA+CGG + Chr4:90659688-90659707 MsG0480023865.01.T01:CDS 35.0%
AAAGTTAGGTTCATTCAAGG+AGG + Chr4:90658892-90658911 MsG0480023865.01.T01:intron 35.0%
AAATCTTTGTGGTGCAGAAA+TGG + Chr4:90656940-90656959 MsG0480023865.01.T01:intron 35.0%
AAGTACTTTGATGTCCTGAT+GGG - Chr4:90659276-90659295 None:intergenic 35.0%
AATTGCACCTATACTTGGTT+TGG - Chr4:90659978-90659997 None:intergenic 35.0%
ACCAGAACACATTTGACATT+TGG - Chr4:90657007-90657026 None:intergenic 35.0%
ATATGAGCAAATCCTACATC+TGG - Chr4:90658467-90658486 None:intergenic 35.0%
ATCGTATCATAACAGAGGTA+TGG + Chr4:90658294-90658313 MsG0480023865.01.T01:intron 35.0%
ATGTCAATTGCACCTATACT+TGG - Chr4:90659983-90660002 None:intergenic 35.0%
ATTAATGGTCAATGCAGGTA+TGG + Chr4:90657221-90657240 MsG0480023865.01.T01:intron 35.0%
CACAAAAAGGAGAAATGGAA+GGG - Chr4:90658612-90658631 None:intergenic 35.0%
CAGATGCAATTCAAAGGTTA+AGG - Chr4:90657883-90657902 None:intergenic 35.0%
CCAGAACACATTTGACATTT+GGG - Chr4:90657006-90657025 None:intergenic 35.0%
CCCAATATATGCAGATAGAT+TGG - Chr4:90660495-90660514 None:intergenic 35.0%
CCTTTCCATCGAAAATTACA+CGG - Chr4:90660800-90660819 None:intergenic 35.0%
CGATGATTTAATAAGGACTG+AGG + Chr4:90658570-90658589 MsG0480023865.01.T01:intron 35.0%
CTGCAGATAAACTAAGATCT+CGG - Chr4:90657498-90657517 None:intergenic 35.0%
CTTATATTACCGACACAATC+AGG - Chr4:90659051-90659070 None:intergenic 35.0%
CTTCAAGATAGTACAATTGG+TGG + Chr4:90660064-90660083 MsG0480023865.01.T01:intron 35.0%
CTTTATCCACTAATACTGCT+CGG - Chr4:90659888-90659907 None:intergenic 35.0%
CTTTCCATCGAAAATTACAC+GGG - Chr4:90660799-90660818 None:intergenic 35.0%
GAAAAGTTGCATAGCAAAGA+AGG - Chr4:90657412-90657431 None:intergenic 35.0%
GCACTTCAAGATAGTACAAT+TGG + Chr4:90660061-90660080 MsG0480023865.01.T01:intron 35.0%
TAGTGCACAAAAAGGAGAAA+TGG - Chr4:90658617-90658636 None:intergenic 35.0%
TATGAGCAAATCCTACATCT+GGG - Chr4:90658466-90658485 None:intergenic 35.0%
TCATAATTGCCTTCTAAACC+AGG + Chr4:90660129-90660148 MsG0480023865.01.T01:intron 35.0%
TCTTCAGCCATTGAAGAAAT+GGG - Chr4:90656508-90656527 None:intergenic 35.0%
TGCAGGTATGGATATTAAAG+GGG + Chr4:90657233-90657252 MsG0480023865.01.T01:intron 35.0%
TGCATGCAGAAAATTATTGG+AGG + Chr4:90660002-90660021 MsG0480023865.01.T01:intron 35.0%
TTAGAATGTACTTCCAGTTG+AGG + Chr4:90657846-90657865 MsG0480023865.01.T01:intron 35.0%
TTCTTCAGCCATTGAAGAAA+TGG - Chr4:90656509-90656528 None:intergenic 35.0%
TTTGTCAAGAAAAGGGAGAA+GGG - Chr4:90659632-90659651 None:intergenic 35.0%
! AAAGTACTTTGATGTCCTGA+TGG - Chr4:90659277-90659296 None:intergenic 35.0%
! AACAAGCCAATTCCATTTTC+TGG - Chr4:90658443-90658462 None:intergenic 35.0%
! AACATAACTGTGGGTTAAAG+AGG - Chr4:90660624-90660643 None:intergenic 35.0%
! ATACCTGCATTGACCATTAA+TGG - Chr4:90657222-90657241 None:intergenic 35.0%
! ATACTCAGTTTTCATTACGC+TGG - Chr4:90659818-90659837 None:intergenic 35.0%
! ATGAAAGGATGATTCTAGCT+AGG + Chr4:90656773-90656792 MsG0480023865.01.T01:intron 35.0%
! ATTGAGACCTTTTGCACTAA+AGG - Chr4:90657291-90657310 None:intergenic 35.0%
! CAGCTTAAAGTGAGTCTTTT+TGG + Chr4:90660208-90660227 MsG0480023865.01.T01:intron 35.0%
! TAGATTCTAAAGAGTTTGCC+TGG - Chr4:90660150-90660169 None:intergenic 35.0%
! TGTAGGATTTGCTCATATAG+CGG + Chr4:90658469-90658488 MsG0480023865.01.T01:CDS 35.0%
!! AAAGGCACCGTTAATTCTAA+CGG + Chr4:90656535-90656554 MsG0480023865.01.T01:CDS 35.0%
!! CATACAAGTTTGTTGCCAAA+AGG - Chr4:90658919-90658938 None:intergenic 35.0%
!! GATGCAATATATGTTGGCTT+AGG + Chr4:90658848-90658867 MsG0480023865.01.T01:CDS 35.0%
!! GATGGAATAACAATGGGTTT+TGG + Chr4:90658245-90658264 MsG0480023865.01.T01:CDS 35.0%
!! TCTATTTCTAGTTGCTGAGT+GGG + Chr4:90659571-90659590 MsG0480023865.01.T01:intron 35.0%
!! TTCTATTTCTAGTTGCTGAG+TGG + Chr4:90659570-90659589 MsG0480023865.01.T01:intron 35.0%
!!! CTTATTTGGTTTTGAGTGGT+AGG + Chr4:90657179-90657198 MsG0480023865.01.T01:intron 35.0%
!!! GTTTTGAGAGTCACCATTAA+TGG + Chr4:90657206-90657225 MsG0480023865.01.T01:intron 35.0%
AAAAGGAGAAATGGAAGGGT+TGG - Chr4:90658608-90658627 None:intergenic 40.0%
AAACATCTAGATGTGGTCTC+TGG + Chr4:90658678-90658697 MsG0480023865.01.T01:intron 40.0%
AAAGTGGAAACCATCAAGGT+TGG + Chr4:90660708-90660727 MsG0480023865.01.T01:CDS 40.0%
AAGAGTTTGCCTGGTTTAGA+AGG - Chr4:90660141-90660160 None:intergenic 40.0%
AAGCACACCTTTAGTGCAAA+AGG + Chr4:90657281-90657300 MsG0480023865.01.T01:intron 40.0%
AATGAACCTAACTTTCCCGA+TGG - Chr4:90658887-90658906 None:intergenic 40.0%
AGACCTCAATCACATCTGAT+AGG - Chr4:90657555-90657574 None:intergenic 40.0%
AGAGACACTGAACTTCCTTA+TGG + Chr4:90657951-90657970 MsG0480023865.01.T01:intron 40.0%
AGCAAGATATGAGTCAAACC+CGG + Chr4:90659298-90659317 MsG0480023865.01.T01:intron 40.0%
AGTACTTTGATGTCCTGATG+GGG - Chr4:90659275-90659294 None:intergenic 40.0%
ATAAGGAAGTTCAGTGTCTC+TGG - Chr4:90657952-90657971 None:intergenic 40.0%
ATCATACATACCGGCACAAA+AGG - Chr4:90657050-90657069 None:intergenic 40.0%
ATCTTGGATTGACTGGAAAG+AGG + Chr4:90658810-90658829 MsG0480023865.01.T01:CDS 40.0%
ATGGCTGAAGAATTCGTCAA+AGG + Chr4:90656517-90656536 MsG0480023865.01.T01:CDS 40.0%
CAACCTATCAGATGTGATTG+AGG + Chr4:90657549-90657568 MsG0480023865.01.T01:CDS 40.0%
CAATACAAGCAACACTAGAC+AGG - Chr4:90660895-90660914 None:intergenic 40.0%
CACACACAGAAACATCCATA+AGG - Chr4:90657969-90657988 None:intergenic 40.0%
CATCTGCTTCTCTCATTACA+GGG + Chr4:90657897-90657916 MsG0480023865.01.T01:intron 40.0%
CCAACATATATTGCATCTGC+TGG - Chr4:90658845-90658864 None:intergenic 40.0%
CCAGCAGATGCAATATATGT+TGG + Chr4:90658842-90658861 MsG0480023865.01.T01:CDS 40.0%
CCCAAATGTCAAATGTGTTC+TGG + Chr4:90657003-90657022 MsG0480023865.01.T01:CDS 40.0%
CCTCTGTTATGATACGATAG+CGG - Chr4:90658292-90658311 None:intergenic 40.0%
CGAGATCTTAGTTTATCTGC+AGG + Chr4:90657496-90657515 MsG0480023865.01.T01:intron 40.0%
CTAGTGTGTCTGCATAGAAA+TGG + Chr4:90660972-90660991 MsG0480023865.01.T01:three_prime_UTR 40.0%
GAGAAGCAGATGCAATTCAA+AGG - Chr4:90657889-90657908 None:intergenic 40.0%
GAGATTCCACAGAAAGTAAG+TGG - Chr4:90658752-90658771 None:intergenic 40.0%
GATCTTAGTTTATCTGCAGG+CGG + Chr4:90657499-90657518 MsG0480023865.01.T01:intron 40.0%
GCAATGCCAGAAAATGGAAT+TGG + Chr4:90658434-90658453 MsG0480023865.01.T01:CDS 40.0%
GCACAAAAAGGAGAAATGGA+AGG - Chr4:90658613-90658632 None:intergenic 40.0%
GGCAACACCGTTAGAATTAA+CGG - Chr4:90656545-90656564 None:intergenic 40.0%
GGGAAAGTTAGGTTCATTCA+AGG + Chr4:90658889-90658908 MsG0480023865.01.T01:intron 40.0%
GGTTGTTGCTGAAATACAGA+AGG + Chr4:90657254-90657273 MsG0480023865.01.T01:intron 40.0%
GTTCTTGCAATGCCAGAAAA+TGG + Chr4:90658428-90658447 MsG0480023865.01.T01:CDS 40.0%
GTTTGTCAAGAAAAGGGAGA+AGG - Chr4:90659633-90659652 None:intergenic 40.0%
TCACCATTAATGGTCAATGC+AGG + Chr4:90657216-90657235 MsG0480023865.01.T01:intron 40.0%
TCTTGGATTGACTGGAAAGA+GGG + Chr4:90658811-90658830 MsG0480023865.01.T01:CDS 40.0%
TGCTCCTAAGGGTTTAAAGA+CGG - Chr4:90660761-90660780 None:intergenic 40.0%
TGTCTGCATAGAAATGGTGA+AGG + Chr4:90660978-90660997 MsG0480023865.01.T01:three_prime_UTR 40.0%
TTCTGAACAAACTACGCTGA+TGG - Chr4:90659161-90659180 None:intergenic 40.0%
TTCTGTGGAATCTCCGAATT+CGG + Chr4:90658758-90658777 MsG0480023865.01.T01:intron 40.0%
TTGTTCGCCAAACCAAGTAT+AGG + Chr4:90659968-90659987 MsG0480023865.01.T01:intron 40.0%
TTTCCGACCCATTTCTTCAA+TGG + Chr4:90656498-90656517 MsG0480023865.01.T01:CDS 40.0%
! AACCTTGATGGTTTCCACTT+TGG - Chr4:90660709-90660728 None:intergenic 40.0%
! ACCTTGATGGTTTCCACTTT+GGG - Chr4:90660708-90660727 None:intergenic 40.0%
! ATACATTGGCCTGATTGTGT+CGG + Chr4:90659039-90659058 MsG0480023865.01.T01:intron 40.0%
! CCGTGTAATTTTCGATGGAA+AGG + Chr4:90660797-90660816 MsG0480023865.01.T01:exon 40.0%
! GCAAAGAAGGATGATGATGA+TGG - Chr4:90657399-90657418 None:intergenic 40.0%
! GCAGATAGATTGGTCATGTT+TGG - Chr4:90660485-90660504 None:intergenic 40.0%
! GGTTTTCCACTTACTTTCTG+TGG + Chr4:90658743-90658762 MsG0480023865.01.T01:intron 40.0%
! TTCCAGTTGAGGTTCTAATG+AGG + Chr4:90657857-90657876 MsG0480023865.01.T01:intron 40.0%
! TTTTCATTACGCTGGTAAGC+TGG - Chr4:90659810-90659829 None:intergenic 40.0%
!! GAGCTCAAATACTGGTTCTA+TGG + Chr4:90660516-90660535 MsG0480023865.01.T01:intron 40.0%
!!! GGTTTTGGAATTGGCTTATC+TGG + Chr4:90658260-90658279 MsG0480023865.01.T01:CDS 40.0%
!!! TTGGTTTTGAGTGGTAGGTA+AGG + Chr4:90657184-90657203 MsG0480023865.01.T01:intron 40.0%
ACCCAAAGTGGAAACCATCA+AGG + Chr4:90660704-90660723 MsG0480023865.01.T01:CDS 45.0%
AGGAACACACTATGTGCCAT+CGG + Chr4:90658868-90658887 MsG0480023865.01.T01:CDS 45.0%
ATGGGTCGGAAAGAGAAGAA+AGG - Chr4:90656490-90656509 None:intergenic 45.0%
ATTCACTGCAGAACCCAAAG+TGG + Chr4:90660692-90660711 MsG0480023865.01.T01:intron 45.0%
ATTCTCGATGACCGCTTACT+TGG + Chr4:90657469-90657488 MsG0480023865.01.T01:intron 45.0%
CAGCCATTGAAGAAATGGGT+CGG - Chr4:90656504-90656523 None:intergenic 45.0%
CCGCTATCGTATCATAACAG+AGG + Chr4:90658289-90658308 MsG0480023865.01.T01:CDS 45.0%
CTGCGACATGATTTCGTAGA+AGG + Chr4:90659859-90659878 MsG0480023865.01.T01:CDS 45.0%
CTTTAAACCCTTAGGAGCAG+AGG + Chr4:90660762-90660781 MsG0480023865.01.T01:CDS 45.0%
GAAGCCGTCTTTAAACCCTT+AGG + Chr4:90660754-90660773 MsG0480023865.01.T01:CDS 45.0%
GATCTCGGTTACCAAGTAAG+CGG - Chr4:90657483-90657502 None:intergenic 45.0%
GCATCTGCTTCTCTCATTAC+AGG + Chr4:90657896-90657915 MsG0480023865.01.T01:intron 45.0%
GGTGCTTATCTTGGATTGAC+TGG + Chr4:90658803-90658822 MsG0480023865.01.T01:intron 45.0%
TATGTGCCATCGGGAAAGTT+AGG + Chr4:90658878-90658897 MsG0480023865.01.T01:CDS 45.0%
TATTGGGGGAGCTCAAATAC+TGG + Chr4:90660508-90660527 MsG0480023865.01.T01:intron 45.0%
TCAACTTCCTCCAACCTTGA+TGG - Chr4:90660721-90660740 None:intergenic 45.0%
TGAACCAACCAACCAACCAA+CGG + Chr4:90656365-90656384 MsG0480023865.01.T01:CDS 45.0%
TTTAACTGTGCCTCACTGTC+CGG - Chr4:90659320-90659339 None:intergenic 45.0%
! CTGGAAGTACATTCTAACCC+AGG - Chr4:90657843-90657862 None:intergenic 45.0%
! GGAATTGGCTTATCTGGTCA+TGG + Chr4:90658266-90658285 MsG0480023865.01.T01:CDS 45.0%
! GTTGCCCGTGTAATTTTCGA+TGG + Chr4:90660792-90660811 MsG0480023865.01.T01:exon 45.0%
! TGTGTGTGTGTGAGTGTTGT+TGG + Chr4:90656901-90656920 MsG0480023865.01.T01:intron 45.0%
! TTCATGGCGTTGAGAGCTTT+GGG - Chr4:90656586-90656605 None:intergenic 45.0%
! TTCATTCAAGGAGGCCCTTT+TGG + Chr4:90658901-90658920 MsG0480023865.01.T01:intron 45.0%
! TTCTTTTCCTGTGATGCCGT+TGG - Chr4:90656384-90656403 None:intergenic 45.0%
!! ACTCTTGCTCGGTGTTAGTT+TGG + Chr4:90657817-90657836 MsG0480023865.01.T01:intron 45.0%
!! ATTGGCTTGTTCCCAGATGT+AGG + Chr4:90658452-90658471 MsG0480023865.01.T01:CDS 45.0%
!! GATGATGATGATGGCGAAAG+CGG - Chr4:90657390-90657409 None:intergenic 45.0%
!! AAAAAAAATATGTAAAATTT+GGG + Chr4:90656730-90656749 MsG0480023865.01.T01:intron 5.0%
!! AAAATTATAATATAATACAT+TGG + Chr4:90659025-90659044 MsG0480023865.01.T01:intron 5.0%
!!! GTATTATATTATAATTTTAT+TGG - Chr4:90659023-90659042 None:intergenic 5.0%
AAACCCTTAGGAGCAGAGGT+GGG + Chr4:90660766-90660785 MsG0480023865.01.T01:CDS 50.0%
AAGACGGCTTCAACCTCACT+TGG - Chr4:90660745-90660764 None:intergenic 50.0%
ACCATTAGAGTCAGTGCGAC+TGG - Chr4:90659421-90659440 None:intergenic 50.0%
AGGAAGTTCAGTGTCTCTGG+AGG - Chr4:90657949-90657968 None:intergenic 50.0%
AGGTGTCCGAGCAGTATTAG+TGG + Chr4:90659879-90659898 MsG0480023865.01.T01:CDS 50.0%
CATATAGCGGCTCAAAGTCC+AGG + Chr4:90658482-90658501 MsG0480023865.01.T01:CDS 50.0%
CTGACTGCAGGTGCTTATCT+TGG + Chr4:90658794-90658813 MsG0480023865.01.T01:intron 50.0%
GCATTGCAAGAACAGTCCTC+TGG - Chr4:90658421-90658440 None:intergenic 50.0%
GGAACACACTATGTGCCATC+GGG + Chr4:90658869-90658888 MsG0480023865.01.T01:CDS 50.0%
GGCCTCATTAGAACCTCAAC+TGG - Chr4:90657862-90657881 None:intergenic 50.0%
GTGAATTATCCACGGTGAGC+AGG + Chr4:90659696-90659715 MsG0480023865.01.T01:intron 50.0%
GTGGAAACCATCAAGGTTGG+AGG + Chr4:90660711-90660730 MsG0480023865.01.T01:CDS 50.0%
TAAACCCTTAGGAGCAGAGG+TGG + Chr4:90660765-90660784 MsG0480023865.01.T01:CDS 50.0%
TAGTTCTCAGGATCCCCATC+AGG + Chr4:90659259-90659278 MsG0480023865.01.T01:intron 50.0%
TGGGCTAATGAAGCTCTCCA+AGG + Chr4:90659590-90659609 MsG0480023865.01.T01:CDS 50.0%
TTAACTGTGCCTCACTGTCC+GGG - Chr4:90659319-90659338 None:intergenic 50.0%
TTACCAACAGCTCCTTCTCC+TGG - Chr4:90658503-90658522 None:intergenic 50.0%
TTTCCTGTGATGCCGTTGGT+TGG - Chr4:90656380-90656399 None:intergenic 50.0%
TTTGCCTAGTGCAGAGGCAA+CGG - Chr4:90659669-90659688 None:intergenic 50.0%
! CTGAGTATCGCATTGCCTTG+AGG + Chr4:90659830-90659849 MsG0480023865.01.T01:CDS 50.0%
! GGAGGAAGTTGATCCAAGTG+AGG + Chr4:90660729-90660748 MsG0480023865.01.T01:CDS 50.0%
! GTTCATGGCGTTGAGAGCTT+TGG - Chr4:90656587-90656606 None:intergenic 50.0%
! TCATGGCGTTGAGAGCTTTG+GGG - Chr4:90656585-90656604 None:intergenic 50.0%
!! ACCAGTCGCACTGACTCTAA+TGG + Chr4:90659417-90659436 MsG0480023865.01.T01:intron 50.0%
!!! AGAAGGGAGCACCTTTTGCA+AGG - Chr4:90659616-90659635 None:intergenic 50.0%
!!! GTCGTTTTTGCCTAGTGCAG+AGG - Chr4:90659675-90659694 None:intergenic 50.0%
AGTCCAGGAGAAGGAGCTGT+TGG + Chr4:90658497-90658516 MsG0480023865.01.T01:CDS 55.0%
ATGTCGCAGCGAAGACCTCA+AGG - Chr4:90659848-90659867 None:intergenic 55.0%
CAACCAACCAACGGCATCAC+AGG + Chr4:90656374-90656393 MsG0480023865.01.T01:CDS 55.0%
GAAAAGGAACCTGCTCACCG+TGG - Chr4:90659708-90659727 None:intergenic 55.0%
GCTCTCAACGCCATGAACCT+AGG + Chr4:90656589-90656608 MsG0480023865.01.T01:CDS 55.0%
GCTCTCCAAGGCCTTGCAAA+AGG + Chr4:90659602-90659621 MsG0480023865.01.T01:CDS 55.0%
TGAGTCAAACCCGGACAGTG+AGG + Chr4:90659307-90659326 MsG0480023865.01.T01:intron 55.0%
! ATACCGGCACAAAAGGCACG+AGG - Chr4:90657043-90657062 None:intergenic 55.0%
! CTGTGATGCCGTTGGTTGGT+TGG - Chr4:90656376-90656395 None:intergenic 55.0%
! GAGCACCTTTTGCAAGGCCT+TGG - Chr4:90659610-90659629 None:intergenic 55.0%
! GATGCCGTTGGTTGGTTGGT+TGG - Chr4:90656372-90656391 None:intergenic 55.0%
! TACCGGCACAAAAGGCACGA+GGG - Chr4:90657042-90657061 None:intergenic 55.0%
!! GCTCGGTGTTAGTTTGGCCT+GGG + Chr4:90657823-90657842 MsG0480023865.01.T01:intron 55.0%
!! TGCTCGGTGTTAGTTTGGCC+TGG + Chr4:90657822-90657841 MsG0480023865.01.T01:intron 55.0%
GCGGCTCAAAGTCCAGGAGA+AGG + Chr4:90658488-90658507 MsG0480023865.01.T01:CDS 60.0%
TCGCCCACCTCTGCTCCTAA+GGG - Chr4:90660772-90660791 None:intergenic 60.0%
TCTGCCGTTGCCTCTGCACT+AGG + Chr4:90659662-90659681 MsG0480023865.01.T01:CDS 60.0%
! ACCGGCACAAAAGGCACGAG+GGG - Chr4:90657041-90657060 None:intergenic 60.0%
! TCCCCTCGTGCCTTTTGTGC+CGG + Chr4:90657037-90657056 MsG0480023865.01.T01:CDS 60.0%
!! GAGAGCTTTGGGGCGATCGA+GGG - Chr4:90656575-90656594 None:intergenic 60.0%
!! TGAGAGCTTTGGGGCGATCG+AGG - Chr4:90656576-90656595 None:intergenic 60.0%
CTCGCCCACCTCTGCTCCTA+AGG - Chr4:90660773-90660792 None:intergenic 65.0%
GGGGCGATCGAGGGTGAGAA+GGG - Chr4:90656566-90656585 None:intergenic 65.0%
TGGGGCGATCGAGGGTGAGA+AGG - Chr4:90656567-90656586 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 90656312 90661084 90656312 ID=MsG0480023865.01;Name=MsG0480023865.01
Chr4 mRNA 90656312 90661084 90656312 ID=MsG0480023865.01.T01;Parent=MsG0480023865.01;Name=MsG0480023865.01.T01;_AED=0.36;_eAED=0.39;_QI=52|0.44|0.7|1|1|1|10|280|375
Chr4 exon 90656312 90656610 90656312 ID=MsG0480023865.01.T01:exon:33803;Parent=MsG0480023865.01.T01
Chr4 exon 90656957 90657058 90656957 ID=MsG0480023865.01.T01:exon:33804;Parent=MsG0480023865.01.T01
Chr4 exon 90657518 90657570 90657518 ID=MsG0480023865.01.T01:exon:33805;Parent=MsG0480023865.01.T01
Chr4 exon 90658176 90658310 90658176 ID=MsG0480023865.01.T01:exon:33806;Parent=MsG0480023865.01.T01
Chr4 exon 90658422 90658518 90658422 ID=MsG0480023865.01.T01:exon:33807;Parent=MsG0480023865.01.T01
Chr4 exon 90658804 90658899 90658804 ID=MsG0480023865.01.T01:exon:33808;Parent=MsG0480023865.01.T01
Chr4 exon 90659582 90659709 90659582 ID=MsG0480023865.01.T01:exon:33809;Parent=MsG0480023865.01.T01
Chr4 exon 90659811 90659912 90659811 ID=MsG0480023865.01.T01:exon:33810;Parent=MsG0480023865.01.T01
Chr4 exon 90660151 90660216 90660151 ID=MsG0480023865.01.T01:exon:33811;Parent=MsG0480023865.01.T01
Chr4 exon 90660703 90661084 90660703 ID=MsG0480023865.01.T01:exon:33812;Parent=MsG0480023865.01.T01
Chr4 five_prime_UTR 90656312 90656363 90656312 ID=MsG0480023865.01.T01:five_prime_utr;Parent=MsG0480023865.01.T01
Chr4 CDS 90656364 90656610 90656364 ID=MsG0480023865.01.T01:cds;Parent=MsG0480023865.01.T01
Chr4 CDS 90656957 90657058 90656957 ID=MsG0480023865.01.T01:cds;Parent=MsG0480023865.01.T01
Chr4 CDS 90657518 90657570 90657518 ID=MsG0480023865.01.T01:cds;Parent=MsG0480023865.01.T01
Chr4 CDS 90658176 90658310 90658176 ID=MsG0480023865.01.T01:cds;Parent=MsG0480023865.01.T01
Chr4 CDS 90658422 90658518 90658422 ID=MsG0480023865.01.T01:cds;Parent=MsG0480023865.01.T01
Chr4 CDS 90658804 90658899 90658804 ID=MsG0480023865.01.T01:cds;Parent=MsG0480023865.01.T01
Chr4 CDS 90659582 90659709 90659582 ID=MsG0480023865.01.T01:cds;Parent=MsG0480023865.01.T01
Chr4 CDS 90659811 90659912 90659811 ID=MsG0480023865.01.T01:cds;Parent=MsG0480023865.01.T01
Chr4 CDS 90660151 90660216 90660151 ID=MsG0480023865.01.T01:cds;Parent=MsG0480023865.01.T01
Chr4 CDS 90660703 90660804 90660703 ID=MsG0480023865.01.T01:cds;Parent=MsG0480023865.01.T01
Chr4 three_prime_UTR 90660805 90661084 90660805 ID=MsG0480023865.01.T01:three_prime_utr;Parent=MsG0480023865.01.T01
Gene Sequence

>MsG0480023865.01.T01

ATGAACCAACCAACCAACCAACGGCATCACAGGAAAAGAATGCTACTACTTCGTACTGTCGTAGCTAATAATCGTTTTGTTCTTAGTTCATTTCTATCTTCTTCTTCTCTCTCCAAAATCAAACCTTTCTTCTCTTTCCGACCCATTTCTTCAATGGCTGAAGAATTCGTCAAAGGCACCGTTAATTCTAACGGTGTTGCCCTTCTCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGAAATGGATATAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAAATGTCAAATGTGTTCTGGTTGATAGCAGTTCCCCTCGTGCCTTTTGTGCCGGCGGTGATGTGAAGCACATAGCAATGAAAAACAACCTATCAGATGTGATTGAGGTCTTCACAACCGAGTATTCTTTGATATGCAAAATTTCTGAGTACAAGAAACCATATATAAGTTTCATGGATGGAATAACAATGGGTTTTGGAATTGGCTTATCTGGTCATGGCCGCTATCGTATCATAACAGAGAGGACTGTTCTTGCAATGCCAGAAAATGGAATTGGCTTGTTCCCAGATGTAGGATTTGCTCATATAGCGGCTCAAAGTCCAGGAGAAGGAGCTGTTGGTGCTTATCTTGGATTGACTGGAAAGAGGGTTTCTACTCCAGCAGATGCAATATATGTTGGCTTAGGAACACACTATGTGCCATCGGGAAAGTTAGTTGCTGAGTGGGCTAATGAAGCTCTCCAAGGCCTTGCAAAAGGTGCTCCCTTCTCCCTTTTCTTGACAAACAAGTACTTCTCTGCCGTTGCCTCTGCACTAGGCAAAAACGACTGTGAATTATCCACGCTTACCAGCGTAATGAAAACTGAGTATCGCATTGCCTTGAGGTCTTCGCTGCGACATGATTTCGTAGAAGGTGTCCGAGCAGTATTAGTGGATAAAGATCAGGCAAACTCTTTAGAATCTACTGTTTCTGATTTCTCTGCATATGAAATTATGAATATACAGCTTAAAAACCCAAAGTGGAAACCATCAAGGTTGGAGGAAGTTGATCCAAGTGAGGTTGAAGCCGTCTTTAAACCCTTAGGAGCAGAGGTGGGCGAGTTGCCCGTGTAA
Protein sequence

>MsG0480023865.01.T01

MNQPTNQRHHRKRMLLLRTVVANNRFVLSSFLSSSSLSKIKPFFSFRPISSMAEEFVKGTVNSNGVALLTLDRPKALNAMNLEMDIKYKSYLDEWESDPNVKCVLVDSSSPRAFCAGGDVKHIAMKNNLSDVIEVFTTEYSLICKISEYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFAHIAAQSPGEGAVGAYLGLTGKRVSTPADAIYVGLGTHYVPSGKLVAEWANEALQGLAKGAPFSLFLTNKYFSAVASALGKNDCELSTLTSVMKTEYRIALRSSLRHDFVEGVRAVLVDKDQANSLESTVSDFSAYEIMNIQLKNPKWKPSRLEEVDPSEVEAVFKPLGAEVGELPV*