AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480024000.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480024000.01.T01 MTR_8g106840 98.844 173 2 0 21 193 1 173 4.43e-126 352
MsG0480024000.01.T01 MTR_0020s0120 54.913 173 76 2 22 193 1 172 1.99e-64 196
MsG0480024000.01.T01 MTR_0020s0120 53.757 173 71 3 22 193 1 165 2.73e-61 188
MsG0480024000.01.T01 MTR_7g104460 52.874 174 81 1 21 193 1 174 3.13e-61 188
MsG0480024000.01.T01 MTR_2g086270 48.555 173 88 1 22 193 1 173 2.31e-56 176
MsG0480024000.01.T01 MTR_7g084970 49.425 174 86 2 21 193 1 173 2.08e-55 174
MsG0480024000.01.T01 MTR_6g033040 50.575 174 84 2 21 193 1 173 7.64e-55 172
MsG0480024000.01.T01 MTR_1g060190 49.091 165 82 2 21 183 1 165 1.37e-51 164
MsG0480024000.01.T01 MTR_7g006630 50.000 170 82 3 26 193 1 169 6.15e-47 152
MsG0480024000.01.T01 MTR_7g006690 50.296 169 81 3 21 187 1 168 7.23e-47 152
MsG0480024000.01.T01 MTR_7g085020 47.024 168 87 2 27 193 8 174 1.05e-45 149
MsG0480024000.01.T01 MTR_7g085040 46.012 163 82 4 26 187 6 163 7.17e-42 139
MsG0480024000.01.T01 MTR_5g078320 82.667 75 13 0 119 193 15 89 4.11e-39 129
MsG0480024000.01.T01 MTR_7g052830 85.294 34 5 0 88 121 1 34 1.44e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480024000.01.T01 AT1G18100 76.301 173 40 1 22 193 1 173 6.53e-99 284
MsG0480024000.01.T01 AT5G62040 49.425 174 86 2 22 193 1 174 4.11e-57 178
MsG0480024000.01.T01 AT2G27550 50.857 175 84 2 21 193 1 175 4.20e-55 173
MsG0480024000.01.T01 AT5G03840 44.828 174 95 1 21 193 4 177 4.70e-53 167
MsG0480024000.01.T01 AT4G20370 51.190 168 80 2 21 187 1 167 1.12e-52 167
MsG0480024000.01.T01 AT1G65480 50.000 162 79 2 27 187 7 167 7.11e-52 164
MsG0480024000.01.T01 AT1G65480 50.000 162 79 2 27 187 51 211 1.58e-51 165

Find 64 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTAGCCTGAGGCTCCTTC+TGG 0.225327 4:+92223425 None:intergenic
CTCACGCATGCTTGGCTCAC+TGG 0.232917 4:+92225110 None:intergenic
CAACCATTTGTGACATGTTT+AGG 0.256839 4:+92225332 None:intergenic
TCCTTATATATACCTCGCTT+TGG 0.299974 4:+92224899 None:intergenic
GGCTGCCTCGGTTGATCCTT+TGG 0.316826 4:-92225426 MsG0480024000.01.T01:CDS
CGCTTTGGGTTTGTTCCTCC+AGG 0.320975 4:+92224914 None:intergenic
TCACTGGGGCTTGGTGCATC+TGG 0.323583 4:+92225126 None:intergenic
GGCTGCTCAACCATTCCTAT+TGG 0.334282 4:+92223532 None:intergenic
ATGCTTGGCTCACTGGGGCT+TGG 0.342918 4:+92225117 None:intergenic
TCACGCATGCTTGGCTCACT+GGG 0.352667 4:+92225111 None:intergenic
TGGATACCAACCGGTGGTTT+TGG 0.353965 4:+92223589 None:intergenic
GATCTTGTGCATTGTCTTTG+TGG 0.358801 4:-92225459 MsG0480024000.01.T01:CDS
AGGATCGTGGTTGACATTCC+TGG 0.370693 4:-92224932 MsG0480024000.01.T01:CDS
CCTTATATATACCTCGCTTT+GGG 0.371664 4:+92224900 None:intergenic
CTTAGCCTGAGGCTCCTTCT+GGG 0.376302 4:+92223426 None:intergenic
AAGGAGATTCTTCCATATAT+AGG 0.387575 4:-92223613 MsG0480024000.01.T01:CDS
CCACCCAAGGTCACTCTCAC+TGG 0.397435 4:-92225281 MsG0480024000.01.T01:CDS
TGGTATCCACCGATACATAT+TGG 0.404436 4:-92223575 MsG0480024000.01.T01:CDS
TTTGAGCAGAAGGGACCAAT+AGG 0.418830 4:-92223547 MsG0480024000.01.T01:CDS
TTGGTGGTTGGTCGTGTGAT+TGG 0.419912 4:-92225407 MsG0480024000.01.T01:CDS
CCAGTGAGAGTGACCTTGGG+TGG 0.438911 4:+92225281 None:intergenic
GTTGGCATGTCTGTTTACTT+TGG 0.474660 4:-92225356 MsG0480024000.01.T01:CDS
GCATGCGTGAGCTGATACAC+TGG 0.479766 4:-92225098 MsG0480024000.01.T01:intron
GGTCCTAAACATGTCACAAA+TGG 0.480505 4:-92225335 MsG0480024000.01.T01:CDS
TGTATCAGCTCACGCATGCT+TGG 0.481710 4:+92225102 None:intergenic
TCGGTTGATCCTTTGGTGGT+TGG 0.485892 4:-92225419 MsG0480024000.01.T01:CDS
GACATGTTCATTCCATCTGT+TGG 0.499828 4:-92225374 MsG0480024000.01.T01:CDS
GATCACAAAGAAATTGTTGA+AGG 0.501335 4:+92225478 None:intergenic
GTTTCCAGTGAGAGTGACCT+TGG 0.510114 4:+92225277 None:intergenic
TGTCTTTGTGGTGATCATGA+TGG 0.516443 4:-92225447 MsG0480024000.01.T01:CDS
AGAAGGAGCCTCAGGCTAAG+AGG 0.523160 4:-92223423 MsG0480024000.01.T01:CDS
TTAAAGTAGACTGTAGCTAC+AGG 0.523873 4:+92223451 None:intergenic
TGCCTCGGTTGATCCTTTGG+TGG 0.525528 4:-92225423 MsG0480024000.01.T01:CDS
ATGTATCGGTGGATACCAAC+CGG 0.527511 4:+92223580 None:intergenic
TAACTCCCAGAAGGAGCCTC+AGG 0.529044 4:-92223431 MsG0480024000.01.T01:CDS
GGTCACTCTCACTGGAAACA+TGG 0.545850 4:-92225273 MsG0480024000.01.T01:CDS
TTTGCAAGTCAATTGAACCT+TGG 0.546466 4:-92223478 MsG0480024000.01.T01:CDS
GGTGGGTTGATAGCCATGGA+TGG 0.548514 4:+92225299 None:intergenic
CAGTGAGAGTGACCTTGGGT+GGG 0.551987 4:+92225282 None:intergenic
TTTCCAGTGAGAGTGACCTT+GGG 0.557115 4:+92225278 None:intergenic
CTTGGGTGGGTTGATAGCCA+TGG 0.562286 4:+92225295 None:intergenic
GGTGATCATGATGGCTGCCT+CGG 0.563998 4:-92225438 MsG0480024000.01.T01:CDS
TAAACAGACATGCCAACAGA+TGG 0.565070 4:+92225362 None:intergenic
CAAACAAAACCAATATGTAT+CGG 0.565284 4:+92223566 None:intergenic
AGTGTTGAAACTGACTCTAC+TGG 0.584655 4:+92223507 None:intergenic
ATCACACGACCAACCACCAA+AGG 0.596985 4:+92225410 None:intergenic
TTGTGACATAAAGCCATCCA+TGG 0.620992 4:-92225312 MsG0480024000.01.T01:CDS
CACGCATGCTTGGCTCACTG+GGG 0.621761 4:+92225112 None:intergenic
ATTAGCTGACCAGAGTGTAG+AGG 0.628106 4:+92225246 None:intergenic
ACAAAACCAATATGTATCGG+TGG 0.631832 4:+92223569 None:intergenic
CATGGATAACCTCTACACTC+TGG 0.637951 4:-92225255 MsG0480024000.01.T01:intron
CATGGCTATCAACCCACCCA+AGG 0.643435 4:-92225294 MsG0480024000.01.T01:CDS
AGTCTACTTTAACTCCCAGA+AGG 0.644955 4:-92223440 MsG0480024000.01.T01:CDS
GCAGAAGGGACCAATAGGAA+TGG 0.646075 4:-92223542 MsG0480024000.01.T01:CDS
ATAGGACCAAAACCACCGGT+TGG 0.655362 4:-92223595 MsG0480024000.01.T01:CDS
CTTCAACGCCTCTTAGCCTG+AGG 0.661949 4:+92223415 None:intergenic
ATATATAGGACCAAAACCAC+CGG 0.662745 4:-92223599 MsG0480024000.01.T01:CDS
AAATTGTTGAAGGACAAAGA+AGG 0.664190 4:+92225488 None:intergenic
TTGAAACTGACTCTACTGGT+TGG 0.690180 4:+92223511 None:intergenic
GGAGGAACAAACCCAAAGCG+AGG 0.693274 4:-92224911 MsG0480024000.01.T01:intron
AACCACCAAAGGATCAACCG+AGG 0.707404 4:+92225421 None:intergenic
ATCGTGGTTGACATTCCTGG+AGG 0.727325 4:-92224929 MsG0480024000.01.T01:CDS
TATCGGTGGATACCAACCGG+TGG 0.737473 4:+92223583 None:intergenic
CTGTAGCTACAGGAAGACCA+AGG 0.739753 4:+92223461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATATCAAAATAAAAAT+AGG + Chr4:92223928-92223947 None:intergenic 10.0%
!! TTCATATCAAAATAAAAATA+GGG + Chr4:92223927-92223946 None:intergenic 10.0%
!!! TGAGTTTATATAATTTTTTT+TGG - Chr4:92224137-92224156 MsG0480024000.01.T01:intron 10.0%
!! AAATTATAGAGTATGTATAA+AGG + Chr4:92225204-92225223 None:intergenic 15.0%
!! TCAAAAAGAAAAATAATTTG+TGG + Chr4:92224501-92224520 None:intergenic 15.0%
!! TTTACGAAAAAATAAATGTT+TGG + Chr4:92224651-92224670 None:intergenic 15.0%
!!! ATAAGGAAATAATTTTTGAT+CGG - Chr4:92224025-92224044 MsG0480024000.01.T01:intron 15.0%
!!! CAAATTATTTTTCTTTTTGA+AGG - Chr4:92224501-92224520 MsG0480024000.01.T01:intron 15.0%
!! AGCATATAAAATATTGGTAA+AGG - Chr4:92224932-92224951 MsG0480024000.01.T01:CDS 20.0%
!! ATCAAAATAAAAATAGGGAA+GGG + Chr4:92223922-92223941 None:intergenic 20.0%
!! TATCAAAATAAAAATAGGGA+AGG + Chr4:92223923-92223942 None:intergenic 20.0%
!!! AACCTTAATTAGTTTTTCTT+TGG - Chr4:92225262-92225281 MsG0480024000.01.T01:CDS 20.0%
!!! ATTATTTTTCTTTTTGAAGG+AGG - Chr4:92224504-92224523 MsG0480024000.01.T01:intron 20.0%
!!! CAAAAAAGTATGAAGTATTT+GGG + Chr4:92224716-92224735 None:intergenic 20.0%
!!! TCAAAAAAGTATGAAGTATT+TGG + Chr4:92224717-92224736 None:intergenic 20.0%
!!! TTGTGATATTTTTTACAAAG+AGG + Chr4:92224325-92224344 None:intergenic 20.0%
!!! TTGTTTTTTATATTGAATCC+TGG - Chr4:92224410-92224429 MsG0480024000.01.T01:intron 20.0%
!!! TTTTCTTCTTATTATGTACA+CGG - Chr4:92224065-92224084 MsG0480024000.01.T01:intron 20.0%
! AAAAACTAGTTAACTAGGTA+TGG + Chr4:92224598-92224617 None:intergenic 25.0%
! CAAACAAAACCAATATGTAT+CGG + Chr4:92225345-92225364 None:intergenic 25.0%
! CACCAAAGAAAAACTAATTA+AGG + Chr4:92225267-92225286 None:intergenic 25.0%
! GCTTAGAGCATATAAAATAT+TGG - Chr4:92224926-92224945 MsG0480024000.01.T01:CDS 25.0%
! TCAAAATAAAAATAGGGAAG+GGG + Chr4:92223921-92223940 None:intergenic 25.0%
!! AACATGCATGAATCTATTTT+CGG - Chr4:92224282-92224301 MsG0480024000.01.T01:intron 25.0%
!!! CTTCAAGTTTCCATTTTTTA+AGG - Chr4:92223956-92223975 MsG0480024000.01.T01:intron 25.0%
!!! GCATTTCTAAAATCAACAAT+CGG + Chr4:92224237-92224256 None:intergenic 25.0%
!!! GTATATGATCAAAGTTTTGA+TGG - Chr4:92223719-92223738 MsG0480024000.01.T01:intron 25.0%
!!! TCATGCATGTTGATTTTTTT+TGG + Chr4:92224273-92224292 None:intergenic 25.0%
!!! TGATTTTAGAAATGCTTGTT+TGG - Chr4:92224242-92224261 MsG0480024000.01.T01:intron 25.0%
!!! TTTTTTTGGATGACATACAA+TGG - Chr4:92224151-92224170 MsG0480024000.01.T01:intron 25.0%
AAATTGTTGAAGGACAAAGA+AGG + Chr4:92223423-92223442 None:intergenic 30.0%
AAGGAGATTCTTCCATATAT+AGG - Chr4:92225295-92225314 MsG0480024000.01.T01:CDS 30.0%
AGTGCAAAAACTAGTTAACT+AGG + Chr4:92224603-92224622 None:intergenic 30.0%
CGTTTGTTTGTGTAAATCAA+CGG - Chr4:92225137-92225156 MsG0480024000.01.T01:CDS 30.0%
GATCACAAAGAAATTGTTGA+AGG + Chr4:92223433-92223452 None:intergenic 30.0%
! GTTGATTTACACAAACAAAC+GGG + Chr4:92225138-92225157 None:intergenic 30.0%
!! ACTGTTCTCTTTAAAACAAG+TGG + Chr4:92224882-92224901 None:intergenic 30.0%
!! AGATACACCAATTTTGAAGA+CGG - Chr4:92224759-92224778 MsG0480024000.01.T01:intron 30.0%
!! CGTTGATTTACACAAACAAA+CGG + Chr4:92225139-92225158 None:intergenic 30.0%
!!! AGTTAACTAGTTTTTGCACT+CGG - Chr4:92224603-92224622 MsG0480024000.01.T01:intron 30.0%
!!! TGTGCTAATTGTTTTTAGCA+AGG + Chr4:92225038-92225057 None:intergenic 30.0%
!!! TTTCCATTTTTTAAGGATCG+TGG - Chr4:92223963-92223982 MsG0480024000.01.T01:intron 30.0%
ACAAAACCAATATGTATCGG+TGG + Chr4:92225342-92225361 None:intergenic 35.0%
ACGGGCATGATTTATGTTAA+AGG + Chr4:92225120-92225139 None:intergenic 35.0%
ATATATAGGACCAAAACCAC+CGG - Chr4:92225309-92225328 MsG0480024000.01.T01:CDS 35.0%
CAACCACGATCCTTAAAAAA+TGG + Chr4:92223969-92223988 None:intergenic 35.0%
CAACCATTTGTGACATGTTT+AGG + Chr4:92223579-92223598 None:intergenic 35.0%
CCTTATATATACCTCGCTTT+GGG + Chr4:92224011-92224030 None:intergenic 35.0%
TAAAATCAACAATCGGCAAG+TGG + Chr4:92224230-92224249 None:intergenic 35.0%
TCACTTATCAAGATGTTGCA+TGG - Chr4:92224113-92224132 MsG0480024000.01.T01:intron 35.0%
TCCTTATATATACCTCGCTT+TGG + Chr4:92224012-92224031 None:intergenic 35.0%
TGAAACCACACTTTAGTTAG+AGG - Chr4:92224904-92224923 MsG0480024000.01.T01:intron 35.0%
TTAAAGTAGACTGTAGCTAC+AGG + Chr4:92225460-92225479 None:intergenic 35.0%
TTTGCAAGTCAATTGAACCT+TGG - Chr4:92225430-92225449 MsG0480024000.01.T01:CDS 35.0%
!! GATACACCAATTTTGAAGAC+GGG - Chr4:92224760-92224779 MsG0480024000.01.T01:intron 35.0%
!!! ATTGGTTTTGTTTGAGCAGA+AGG - Chr4:92225351-92225370 MsG0480024000.01.T01:CDS 35.0%
!!! TAGTTTTTCTTTGGTGTTGC+AGG - Chr4:92225271-92225290 MsG0480024000.01.T01:CDS 35.0%
!!! TTGGTTTTGTTTGAGCAGAA+GGG - Chr4:92225352-92225371 MsG0480024000.01.T01:CDS 35.0%
AAGACACCCGTCTTCAAAAT+TGG + Chr4:92224769-92224788 None:intergenic 40.0%
AGTCTACTTTAACTCCCAGA+AGG - Chr4:92225468-92225487 MsG0480024000.01.T01:CDS 40.0%
AGTGTGAGAAGCTCATTTGT+TGG + Chr4:92224391-92224410 None:intergenic 40.0%
CCCAAAGCGAGGTATATATA+AGG - Chr4:92224008-92224027 MsG0480024000.01.T01:intron 40.0%
CTAAGCCTCTAACTAAAGTG+TGG + Chr4:92224912-92224931 None:intergenic 40.0%
GACATGTTCATTCCATCTGT+TGG - Chr4:92223534-92223553 MsG0480024000.01.T01:CDS 40.0%
GATCTTGTGCATTGTCTTTG+TGG - Chr4:92223449-92223468 MsG0480024000.01.T01:CDS 40.0%
GGTCCTAAACATGTCACAAA+TGG - Chr4:92223573-92223592 MsG0480024000.01.T01:CDS 40.0%
GTTGGCATGTCTGTTTACTT+TGG - Chr4:92223552-92223571 MsG0480024000.01.T01:CDS 40.0%
TAAACAGACATGCCAACAGA+TGG + Chr4:92223549-92223568 None:intergenic 40.0%
TGGAAGACAACATTGAATCC+AGG + Chr4:92224431-92224450 None:intergenic 40.0%
TGGTATCCACCGATACATAT+TGG - Chr4:92225333-92225352 MsG0480024000.01.T01:CDS 40.0%
TGTCTTTGTGGTGATCATGA+TGG - Chr4:92223461-92223480 MsG0480024000.01.T01:CDS 40.0%
TTGTGACATAAAGCCATCCA+TGG - Chr4:92223596-92223615 MsG0480024000.01.T01:CDS 40.0%
! AGTGTTGAAACTGACTCTAC+TGG + Chr4:92225404-92225423 None:intergenic 40.0%
! CATTTGTTGGATTGAAGCAG+TGG + Chr4:92224378-92224397 None:intergenic 40.0%
! TTGAAACTGACTCTACTGGT+TGG + Chr4:92225400-92225419 None:intergenic 40.0%
!! TTTCTTTGGTGTTGCAGGAA+AGG - Chr4:92225276-92225295 MsG0480024000.01.T01:CDS 40.0%
!!! GGTGGTTTTGGTCCTATATA+TGG + Chr4:92225310-92225329 None:intergenic 40.0%
ACGTTTCCTGTGTGACACAT+TGG + Chr4:92224858-92224877 None:intergenic 45.0%
AGATCATCACACGTAGCATG+TGG - Chr4:92224795-92224814 MsG0480024000.01.T01:intron 45.0%
ATTAGCTGACCAGAGTGTAG+AGG + Chr4:92223665-92223684 None:intergenic 45.0%
CATGGATAACCTCTACACTC+TGG - Chr4:92223653-92223672 MsG0480024000.01.T01:intron 45.0%
TCATGACCAATGTGTCACAC+AGG - Chr4:92224849-92224868 MsG0480024000.01.T01:intron 45.0%
TGCTACGTGTGATGATCTCA+AGG + Chr4:92224793-92224812 None:intergenic 45.0%
TGGATTGAAGCAGTGGAACA+AGG + Chr4:92224371-92224390 None:intergenic 45.0%
TTTCCAGTGAGAGTGACCTT+GGG + Chr4:92223633-92223652 None:intergenic 45.0%
TTTGAGCAGAAGGGACCAAT+AGG - Chr4:92225361-92225380 MsG0480024000.01.T01:CDS 45.0%
! ATGTATCGGTGGATACCAAC+CGG + Chr4:92225331-92225350 None:intergenic 45.0%
! TGGCTTGCATGTCACAAAAG+TGG - Chr4:92224815-92224834 MsG0480024000.01.T01:intron 45.0%
AACCACCAAAGGATCAACCG+AGG + Chr4:92223490-92223509 None:intergenic 50.0%
AGGATCGTGGTTGACATTCC+TGG - Chr4:92223976-92223995 MsG0480024000.01.T01:intron 50.0%
ATAGGACCAAAACCACCGGT+TGG - Chr4:92225313-92225332 MsG0480024000.01.T01:CDS 50.0%
ATCACACGACCAACCACCAA+AGG + Chr4:92223501-92223520 None:intergenic 50.0%
ATCGTGGTTGACATTCCTGG+AGG - Chr4:92223979-92223998 MsG0480024000.01.T01:intron 50.0%
CTGTAGCTACAGGAAGACCA+AGG + Chr4:92225450-92225469 None:intergenic 50.0%
GAAGCACGCACGAATAGACA+TGG + Chr4:92225164-92225183 None:intergenic 50.0%
GCAGAAGGGACCAATAGGAA+TGG - Chr4:92225366-92225385 MsG0480024000.01.T01:CDS 50.0%
GGCTGCTCAACCATTCCTAT+TGG + Chr4:92225379-92225398 None:intergenic 50.0%
GGTCACTCTCACTGGAAACA+TGG - Chr4:92223635-92223654 MsG0480024000.01.T01:intron 50.0%
GTTTCCAGTGAGAGTGACCT+TGG + Chr4:92223634-92223653 None:intergenic 50.0%
TGTATCAGCTCACGCATGCT+TGG + Chr4:92223809-92223828 None:intergenic 50.0%
! TCGGTTGATCCTTTGGTGGT+TGG - Chr4:92223489-92223508 MsG0480024000.01.T01:CDS 50.0%
! TGGATACCAACCGGTGGTTT+TGG + Chr4:92225322-92225341 None:intergenic 50.0%
! TTGGTGGTTGGTCGTGTGAT+TGG - Chr4:92223501-92223520 MsG0480024000.01.T01:CDS 50.0%
AGAAGGAGCCTCAGGCTAAG+AGG - Chr4:92225485-92225504 MsG0480024000.01.T01:CDS 55.0%
CAGTGAGAGTGACCTTGGGT+GGG + Chr4:92223629-92223648 None:intergenic 55.0%
CATGCAGCACAGGTGGAAGA+TGG + Chr4:92224451-92224470 None:intergenic 55.0%
CATGGCTATCAACCCACCCA+AGG - Chr4:92223614-92223633 MsG0480024000.01.T01:CDS 55.0%
CTTAGCCTGAGGCTCCTTCT+GGG + Chr4:92225485-92225504 None:intergenic 55.0%
GCATGCGTGAGCTGATACAC+TGG - Chr4:92223810-92223829 MsG0480024000.01.T01:intron 55.0%
GGAGGAACAAACCCAAAGCG+AGG - Chr4:92223997-92224016 MsG0480024000.01.T01:intron 55.0%
GGTGATCATGATGGCTGCCT+CGG - Chr4:92223470-92223489 MsG0480024000.01.T01:CDS 55.0%
TAACTCCCAGAAGGAGCCTC+AGG - Chr4:92225477-92225496 MsG0480024000.01.T01:CDS 55.0%
TATCGGTGGATACCAACCGG+TGG + Chr4:92225328-92225347 None:intergenic 55.0%
TCACGCATGCTTGGCTCACT+GGG + Chr4:92223800-92223819 None:intergenic 55.0%
TCTTAGCCTGAGGCTCCTTC+TGG + Chr4:92225486-92225505 None:intergenic 55.0%
TCTTCCACCTGTGCTGCATG+TGG - Chr4:92224451-92224470 MsG0480024000.01.T01:intron 55.0%
TGCCTCGGTTGATCCTTTGG+TGG - Chr4:92223485-92223504 MsG0480024000.01.T01:CDS 55.0%
! CGCTTTGGGTTTGTTCCTCC+AGG + Chr4:92223997-92224016 None:intergenic 55.0%
!! CTTGGGTGGGTTGATAGCCA+TGG + Chr4:92223616-92223635 None:intergenic 55.0%
!! GGTGGGTTGATAGCCATGGA+TGG + Chr4:92223612-92223631 None:intergenic 55.0%
ATAGCCGCCACATGCAGCAC+AGG + Chr4:92224461-92224480 None:intergenic 60.0%
ATGCTTGGCTCACTGGGGCT+TGG + Chr4:92223794-92223813 None:intergenic 60.0%
CACGCATGCTTGGCTCACTG+GGG + Chr4:92223799-92223818 None:intergenic 60.0%
CCACCCAAGGTCACTCTCAC+TGG - Chr4:92223627-92223646 MsG0480024000.01.T01:intron 60.0%
CCAGTGAGAGTGACCTTGGG+TGG + Chr4:92223630-92223649 None:intergenic 60.0%
CTCACGCATGCTTGGCTCAC+TGG + Chr4:92223801-92223820 None:intergenic 60.0%
GGCTGCCTCGGTTGATCCTT+TGG - Chr4:92223482-92223501 MsG0480024000.01.T01:CDS 60.0%
TCCACCTGTGCTGCATGTGG+CGG - Chr4:92224454-92224473 MsG0480024000.01.T01:intron 60.0%
!! TCACTGGGGCTTGGTGCATC+TGG + Chr4:92223785-92223804 None:intergenic 60.0%
GCCGCCACATGCAGCACAGG+TGG + Chr4:92224458-92224477 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 92223417 92225513 92223417 ID=MsG0480024000.01;Name=MsG0480024000.01
Chr4 mRNA 92223417 92225513 92223417 ID=MsG0480024000.01.T01;Parent=MsG0480024000.01;Name=MsG0480024000.01.T01;_AED=0.39;_eAED=0.42;_QI=0|0|0|1|0.33|0.5|4|0|193
Chr4 exon 92225256 92225513 92225256 ID=MsG0480024000.01.T01:exon:34057;Parent=MsG0480024000.01.T01
Chr4 exon 92225099 92225160 92225099 ID=MsG0480024000.01.T01:exon:34056;Parent=MsG0480024000.01.T01
Chr4 exon 92224912 92224952 92224912 ID=MsG0480024000.01.T01:exon:34055;Parent=MsG0480024000.01.T01
Chr4 exon 92223417 92223637 92223417 ID=MsG0480024000.01.T01:exon:34054;Parent=MsG0480024000.01.T01
Chr4 CDS 92225256 92225513 92225256 ID=MsG0480024000.01.T01:cds;Parent=MsG0480024000.01.T01
Chr4 CDS 92225099 92225160 92225099 ID=MsG0480024000.01.T01:cds;Parent=MsG0480024000.01.T01
Chr4 CDS 92224912 92224952 92224912 ID=MsG0480024000.01.T01:cds;Parent=MsG0480024000.01.T01
Chr4 CDS 92223417 92223637 92223417 ID=MsG0480024000.01.T01:cds;Parent=MsG0480024000.01.T01
Gene Sequence

>MsG0480024000.01.T01

ATGCCTTCTTTGTCCTTCAACAATTTCTTTGTGATCTTGTGCATTGTCTTTGTGGTGATCATGATGGCTGCCTCGGTTGATCCTTTGGTGGTTGGTCGTGTGATTGGTGATGTTGTTGACATGTTCATTCCATCTGTTGGCATGTCTGTTTACTTTGGTCCTAAACATGTCACAAATGGTTGTGACATAAAGCCATCCATGGCTATCAACCCACCCAAGGTCACTCTCACTGGAAACATGGATAACCTCTACACTCTGATTATGACTGATCCAGATGCACCAAGCCCCAGTGAGCCAAGCATGCGTGAGCTGATACACTGGATCGTGGTTGACATTCCTGGAGGAACAAACCCAAAGCGAGGAAAGGAGATTCTTCCATATATAGGACCAAAACCACCGGTTGGTATCCACCGATACATATTGGTTTTGTTTGAGCAGAAGGGACCAATAGGAATGGTTGAGCAGCCAACCAGTAGAGTCAGTTTCAACACTCGTTATTTTGCAAGTCAATTGAACCTTGGTCTTCCTGTAGCTACAGTCTACTTTAACTCCCAGAAGGAGCCTCAGGCTAAGAGGCGTTGA
Protein sequence

>MsG0480024000.01.T01

MPSLSFNNFFVILCIVFVVIMMAASVDPLVVGRVIGDVVDMFIPSVGMSVYFGPKHVTNGCDIKPSMAINPPKVTLTGNMDNLYTLIMTDPDAPSPSEPSMRELIHWIVVDIPGGTNPKRGKEILPYIGPKPPVGIHRYILVLFEQKGPIGMVEQPTSRVSFNTRYFASQLNLGLPVATVYFNSQKEPQAKRR*