Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033617.01.T01 | XP_013443336.1 | 98.837 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 1.66E-121 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033617.01.T01 | Q9XH44 | 74.419 | 172 | 43 | 1 | 2 | 172 | 3 | 174 | 1.46E-93 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033617.01.T01 | G7ZV36 | 98.837 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 7.94e-122 | 350 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001008.01 | MsG0680033617.01 | 0.802465 | 5.537630e-49 | 2.714505e-46 |
| MsG0180003320.01 | MsG0680033617.01 | 0.809057 | 2.284237e-50 | 1.327550e-47 |
| MsG0180003484.01 | MsG0680033617.01 | 0.800095 | 1.692428e-48 | 7.812056e-46 |
| MsG0380013843.01 | MsG0680033617.01 | 0.807151 | 5.815603e-50 | 3.215015e-47 |
| MsG0680030960.01 | MsG0680033617.01 | 0.800307 | 1.532169e-48 | 7.110986e-46 |
| MsG0680033368.01 | MsG0680033617.01 | 0.805211 | 1.489239e-49 | 7.833073e-47 |
| MsG0680033617.01 | MsG0680034348.01 | 0.804176 | 2.449441e-49 | 1.254453e-46 |
| MsG0680033617.01 | MsG0680034418.01 | 0.812750 | 3.622746e-51 | 2.322396e-48 |
| MsG0680033617.01 | MsG0680034728.01 | 0.825670 | 4.131249e-54 | 3.790566e-51 |
| MsG0680033617.01 | MsG0780036839.01 | 0.824364 | 8.402003e-54 | 7.426266e-51 |
| MsG0680033617.01 | MsG0780037182.01 | 0.802436 | 5.615194e-49 | 2.750529e-46 |
| MsG0680033617.01 | MsG0780038519.01 | 0.801823 | 7.505771e-49 | 3.619646e-46 |
| MsG0680033617.01 | MsG0780039883.01 | 0.816736 | 4.740784e-52 | 3.386742e-49 |
| MsG0680033617.01 | MsG0780039949.01 | 0.833213 | 6.066927e-56 | 6.940260e-53 |
| MsG0680033617.01 | MsG0780039979.01 | 0.812146 | 4.910688e-51 | 3.097822e-48 |
| MsG0680033617.01 | MsG0780040497.01 | 0.818723 | 1.689452e-52 | 1.274558e-49 |
| MsG0680033617.01 | MsG0780040498.01 | 0.819483 | 1.134164e-52 | 8.739069e-50 |
| MsG0680033617.01 | MsG0780041025.01 | 0.804598 | 2.000152e-49 | 1.035543e-46 |
| MsG0680033617.01 | MsG0780041316.01 | 0.813943 | 1.981506e-51 | 1.311785e-48 |
| MsG0680033617.01 | MsG0880043212.01 | 0.808789 | 2.606627e-50 | 1.504055e-47 |
| MsG0680033617.01 | MsG0880043953.01 | 0.807400 | 5.150055e-50 | 2.865709e-47 |
| MsG0680033617.01 | MsG0880045854.01 | 0.808019 | 3.804410e-50 | 2.151380e-47 |
| MsG0680033617.01 | MsG0880046071.01 | 0.805610 | 1.228388e-49 | 6.527558e-47 |
| MsG0680033617.01 | MsG0880046095.01 | 0.816867 | 4.431506e-52 | 3.177264e-49 |
| MsG0680033617.01 | MsG0880046273.01 | 0.824907 | 6.256879e-54 | 5.617877e-51 |
| MsG0480019024.01 | MsG0680033617.01 | 0.804272 | 2.339547e-49 | 1.201106e-46 |
| MsG0480019146.01 | MsG0680033617.01 | 0.813523 | 2.451771e-51 | 1.604859e-48 |
| MsG0480021129.01 | MsG0680033617.01 | 0.808959 | 2.396363e-50 | 1.389070e-47 |
| MsG0480022886.01 | MsG0680033617.01 | 0.810933 | 9.009270e-51 | 5.503411e-48 |
| MsG0480023322.01 | MsG0680033617.01 | 0.800180 | 1.626640e-48 | 7.524486e-46 |
| MsG0580024087.01 | MsG0680033617.01 | 0.801819 | 7.521806e-49 | 3.626954e-46 |
| MsG0580025431.01 | MsG0680033617.01 | 0.826925 | 2.075632e-54 | 1.974151e-51 |
| MsG0580025586.01 | MsG0680033617.01 | 0.805850 | 1.093896e-49 | 5.849248e-47 |
| MsG0380016299.01 | MsG0680033617.01 | 0.829160 | 6.013812e-55 | 6.105146e-52 |
| MsG0380016485.01 | MsG0680033617.01 | 0.809970 | 1.454007e-50 | 8.657937e-48 |
| MsG0380017168.01 | MsG0680033617.01 | 0.805624 | 1.220218e-49 | 6.486538e-47 |
| MsG0580026311.01 | MsG0680033617.01 | 0.803560 | 3.288312e-49 | 1.657773e-46 |
| MsG0580029676.01 | MsG0680033617.01 | 0.820666 | 6.080162e-53 | 4.841059e-50 |
| MsG0280006560.01 | MsG0680033617.01 | 0.829009 | 6.541034e-55 | 6.610191e-52 |
| MsG0280007937.01 | MsG0680033617.01 | 0.800979 | 1.117759e-48 | 5.276889e-46 |
| MsG0280009232.01 | MsG0680033617.01 | 0.817171 | 3.787634e-52 | 2.738238e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0680033617.01 | MsG0780040129.01 | PPI |
| MsG0780040130.01 | MsG0680033617.01 | PPI |
| MsG0680033617.01 | MsG0480024000.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033617.01.T01 | MTR_0020s0120 | 98.837 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 2.01e-125 | 350 |
| MsG0680033617.01.T01 | MTR_0020s0120 | 94.767 | 172 | 2 | 1 | 1 | 172 | 1 | 165 | 4.74e-117 | 328 |
| MsG0680033617.01.T01 | MTR_7g104460 | 70.833 | 168 | 48 | 1 | 6 | 172 | 7 | 174 | 1.04e-87 | 254 |
| MsG0680033617.01.T01 | MTR_2g086270 | 66.474 | 173 | 57 | 1 | 1 | 172 | 1 | 173 | 1.48e-86 | 251 |
| MsG0680033617.01.T01 | MTR_1g060190 | 62.264 | 159 | 58 | 1 | 6 | 162 | 7 | 165 | 6.27e-75 | 222 |
| MsG0680033617.01.T01 | MTR_7g084970 | 59.036 | 166 | 68 | 0 | 7 | 172 | 8 | 173 | 1.40e-73 | 219 |
| MsG0680033617.01.T01 | MTR_6g033040 | 58.084 | 167 | 70 | 0 | 6 | 172 | 7 | 173 | 3.30e-69 | 207 |
| MsG0680033617.01.T01 | MTR_7g006690 | 57.485 | 167 | 70 | 1 | 7 | 172 | 8 | 174 | 4.11e-67 | 202 |
| MsG0680033617.01.T01 | MTR_7g085020 | 57.895 | 171 | 71 | 1 | 2 | 172 | 5 | 174 | 4.69e-67 | 202 |
| MsG0680033617.01.T01 | MTR_7g006630 | 56.213 | 169 | 73 | 1 | 5 | 172 | 1 | 169 | 2.01e-66 | 201 |
| MsG0680033617.01.T01 | MTR_8g106840 | 53.757 | 173 | 78 | 2 | 1 | 172 | 2 | 173 | 2.40e-63 | 192 |
| MsG0680033617.01.T01 | MTR_7g085040 | 53.750 | 160 | 73 | 1 | 13 | 172 | 11 | 169 | 2.84e-59 | 182 |
| MsG0680033617.01.T01 | MTR_5g078320 | 46.575 | 73 | 38 | 1 | 100 | 171 | 16 | 88 | 1.13e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033617.01.T01 | AT5G62040 | 68.391 | 174 | 53 | 2 | 1 | 172 | 1 | 174 | 1.95e-84 | 246 |
| MsG0680033617.01.T01 | AT2G27550 | 69.822 | 169 | 49 | 2 | 6 | 172 | 7 | 175 | 7.58e-83 | 242 |
| MsG0680033617.01.T01 | AT5G03840 | 62.791 | 172 | 63 | 1 | 2 | 172 | 6 | 177 | 2.94e-81 | 238 |
| MsG0680033617.01.T01 | AT1G65480 | 62.275 | 167 | 63 | 0 | 6 | 172 | 7 | 173 | 8.11e-76 | 224 |
| MsG0680033617.01.T01 | AT1G65480 | 62.275 | 167 | 63 | 0 | 6 | 172 | 51 | 217 | 1.37e-75 | 225 |
| MsG0680033617.01.T01 | AT4G20370 | 58.683 | 167 | 69 | 0 | 6 | 172 | 7 | 173 | 9.27e-69 | 206 |
| MsG0680033617.01.T01 | AT1G18100 | 52.299 | 174 | 80 | 2 | 1 | 172 | 1 | 173 | 2.86e-61 | 187 |
Find 43 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTAGTGATCCACATTTA+AGG | 0.192828 | 6:+69573045 | MsG0680033617.01.T01:CDS |
| TGGATTCCAATCACTGGCTT+TGG | 0.338572 | 6:-69573635 | None:intergenic |
| GGTACCACAGATGTCTCTTT+TGG | 0.356770 | 6:+69573198 | MsG0680033617.01.T01:CDS |
| TCACTAGGACTAGGAGCATC+TGG | 0.365823 | 6:-69573032 | None:intergenic |
| GGCTTGTTCATAACAATAGA+AGG | 0.369931 | 6:-69572437 | None:intergenic |
| CATGAGATCTGCTTATACTT+TGG | 0.379247 | 6:+69572484 | MsG0680033617.01.T01:CDS |
| ACAAGATGAAGACATATCTA+TGG | 0.389834 | 6:-69573655 | None:intergenic |
| AACAAGCCAAGGGTTGATAT+TGG | 0.415081 | 6:+69572452 | MsG0680033617.01.T01:CDS |
| TCCTAGTGATCCACATTTAA+GGG | 0.415346 | 6:+69573046 | MsG0680033617.01.T01:CDS |
| GAGAATCCAAAGCCAGTGAT+TGG | 0.439509 | 6:+69573629 | MsG0680033617.01.T01:CDS |
| ATTTACAATGTCTAGGCCAT+TGG | 0.453195 | 6:+69572301 | None:intergenic |
| TTGAAGTAAACTGCAGCAAC+AGG | 0.458327 | 6:-69573770 | None:intergenic |
| ATGACCATTTGCAACTTGCT+TGG | 0.464272 | 6:-69572405 | None:intergenic |
| CTTTCTGTAGGAAGAGTGAT+AGG | 0.465009 | 6:+69572329 | MsG0680033617.01.T01:CDS |
| GTCACATTCATTCTTACACT+TGG | 0.469107 | 6:-69572374 | None:intergenic |
| GAGAAACTGCAGCAAGAAGA+AGG | 0.491502 | 6:+69573801 | MsG0680033617.01.T01:CDS |
| ATCACTCTTCCTACAGAAAG+TGG | 0.502508 | 6:-69572326 | None:intergenic |
| TTGAAATTGTCTCTAGAAGA+TGG | 0.510509 | 6:-69573710 | None:intergenic |
| TCAACCAAGCAAGTTGCAAA+TGG | 0.516791 | 6:+69572401 | MsG0680033617.01.T01:CDS |
| TTCTCACAGGAGAATAACCT+TGG | 0.519597 | 6:+69573743 | MsG0680033617.01.T01:CDS |
| CTATTGTTATGAACAAGCCA+AGG | 0.525548 | 6:+69572441 | MsG0680033617.01.T01:CDS |
| CATTGTGATTTACAATGTCT+AGG | 0.527247 | 6:+69572294 | None:intergenic |
| TCATCTTGTTCAAGCAGAGA+AGG | 0.540166 | 6:+69573669 | MsG0680033617.01.T01:CDS |
| TGAAATTGTCTCTAGAAGAT+GGG | 0.541509 | 6:-69573709 | None:intergenic |
| AAATGTGGATCACTAGGACT+AGG | 0.546629 | 6:-69573041 | None:intergenic |
| CACTAGGACTAGGAGCATCT+GGG | 0.549402 | 6:-69573031 | None:intergenic |
| AGGATGGTTACAGATATTCC+AGG | 0.555677 | 6:+69573177 | MsG0680033617.01.T01:intron |
| AAGCCAAGGGTTGATATTGG+TGG | 0.558895 | 6:+69572455 | MsG0680033617.01.T01:CDS |
| AAAGAGACATCTGTGGTACC+TGG | 0.563172 | 6:-69573195 | None:intergenic |
| CAACACAAGGAGATTCTCAC+AGG | 0.564893 | 6:+69573730 | MsG0680033617.01.T01:CDS |
| TATCTATGGATTCCAATCAC+TGG | 0.569156 | 6:-69573641 | None:intergenic |
| ATTTAAGGGAACATCTCCAC+TGG | 0.572031 | 6:+69573060 | MsG0680033617.01.T01:CDS |
| TCACCACCAATATCAACCCT+TGG | 0.583858 | 6:-69572458 | None:intergenic |
| CCATTGGAACCACTTTCTGT+AGG | 0.584120 | 6:+69572317 | MsG0680033617.01.T01:CDS |
| TATTGTTATGAACAAGCCAA+GGG | 0.586275 | 6:+69572442 | MsG0680033617.01.T01:CDS |
| CTAGAGACAATTTCAACACA+AGG | 0.589107 | 6:+69573717 | MsG0680033617.01.T01:CDS |
| TCCCTTAAATGTGGATCACT+AGG | 0.597152 | 6:-69573047 | None:intergenic |
| CCTACAGAAAGTGGTTCCAA+TGG | 0.603095 | 6:-69572317 | None:intergenic |
| TGGAGATGTTCCCTTAAATG+TGG | 0.614063 | 6:-69573056 | None:intergenic |
| GAAATTGTCTCTAGAAGATG+GGG | 0.619592 | 6:-69573708 | None:intergenic |
| TGATGCAGGAAATGAGATTG+TGG | 0.645531 | 6:+69573601 | MsG0680033617.01.T01:intron |
| CTGCAGCAACAGGTAAACCA+AGG | 0.708296 | 6:-69573760 | None:intergenic |
| CTAACCAAAAGAGACATCTG+TGG | 0.754543 | 6:-69573202 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAGAGAATAATTAATTA+AGG | - | Chr6:69573257-69573276 | None:intergenic | 10.0% |
| !! | GTAAAAAAAATAATAACAAA+AGG | + | Chr6:69572753-69572772 | MsG0680033617.01.T01:intron | 10.0% |
| !!! | ATATGTTTTTATATATTGAT+AGG | + | Chr6:69572974-69572993 | MsG0680033617.01.T01:intron | 10.0% |
| !! | ATGTAACTTAATTAAAAGAA+AGG | + | Chr6:69573540-69573559 | MsG0680033617.01.T01:intron | 15.0% |
| !! | GGAAATAAATATACTAATAA+AGG | - | Chr6:69572627-69572646 | None:intergenic | 15.0% |
| !! | TTCATATGTTTCAAAATATA+AGG | + | Chr6:69572522-69572541 | MsG0680033617.01.T01:intron | 15.0% |
| !!! | ATAACAAATGTTTTAGAAAT+CGG | - | Chr6:69572917-69572936 | None:intergenic | 15.0% |
| !!! | TATTTAGTTTTTTTACTTGA+AGG | - | Chr6:69572708-69572727 | None:intergenic | 15.0% |
| !! | CAATGATAAAAAACATGATT+TGG | - | Chr6:69572648-69572667 | None:intergenic | 20.0% |
| !! | TAATTTATTACATATGTGCA+TGG | + | Chr6:69573389-69573408 | MsG0680033617.01.T01:intron | 20.0% |
| !!! | TCTCTATATTTGTTAATCTA+AGG | + | Chr6:69573268-69573287 | MsG0680033617.01.T01:intron | 20.0% |
| !!! | TGAAAATTTTAAAATCCTCA+TGG | - | Chr6:69573369-69573388 | None:intergenic | 20.0% |
| !!! | TTCTAAAACATTTGTTATAG+TGG | + | Chr6:69572919-69572938 | MsG0680033617.01.T01:intron | 20.0% |
| ! | ACTAATAAAGGTAGTTAGTT+AGG | - | Chr6:69572615-69572634 | None:intergenic | 25.0% |
| ! | AGTTAGTTCAAACAATTAAG+CGG | - | Chr6:69572886-69572905 | None:intergenic | 25.0% |
| ! | ATTAAGGTTATATTGATCCT+AGG | - | Chr6:69573241-69573260 | None:intergenic | 25.0% |
| ! | TTAAACAACTTGAGTTCAAT+TGG | + | Chr6:69573335-69573354 | MsG0680033617.01.T01:intron | 25.0% |
| ! | TTACATGTATGGTTGTAAAA+AGG | - | Chr6:69573505-69573524 | None:intergenic | 25.0% |
| !!! | AGTTTTATTATACAAACCAG+TGG | - | Chr6:69573079-69573098 | None:intergenic | 25.0% |
| AATCCAGTTCAATGAGAATA+AGG | + | Chr6:69572820-69572839 | MsG0680033617.01.T01:intron | 30.0% | |
| ACAAGATGAAGACATATCTA+TGG | - | Chr6:69573658-69573677 | None:intergenic | 30.0% | |
| ATACCTTATTCTCATTGAAC+TGG | - | Chr6:69572826-69572845 | None:intergenic | 30.0% | |
| ATTGTTTGAACTAACTGGTT+CGG | + | Chr6:69572890-69572909 | MsG0680033617.01.T01:intron | 30.0% | |
| GCTTAATTGTTTGAACTAAC+TGG | + | Chr6:69572885-69572904 | MsG0680033617.01.T01:intron | 30.0% | |
| GTTAGTTCAAACAATTAAGC+GGG | - | Chr6:69572885-69572904 | None:intergenic | 30.0% | |
| TACTTCGCTAATGTAACATA+TGG | - | Chr6:69572566-69572585 | None:intergenic | 30.0% | |
| TATTGTTATGAACAAGCCAA+GGG | + | Chr6:69572442-69572461 | MsG0680033617.01.T01:CDS | 30.0% | |
| TGTGATGCAATTTACATGTA+TGG | - | Chr6:69573516-69573535 | None:intergenic | 30.0% | |
| TTAAATCCTCAAGTTCTTAG+TGG | - | Chr6:69573319-69573338 | None:intergenic | 30.0% | |
| TTTATTCCCTCTTATCAACT+TGG | + | Chr6:69573139-69573158 | MsG0680033617.01.T01:intron | 30.0% | |
| ! | TACATTAGCGAAGTATCTAT+CGG | + | Chr6:69572571-69572590 | MsG0680033617.01.T01:intron | 30.0% |
| ! | TGAAATTGTCTCTAGAAGAT+GGG | - | Chr6:69573712-69573731 | None:intergenic | 30.0% |
| ! | TTGAAATTGTCTCTAGAAGA+TGG | - | Chr6:69573713-69573732 | None:intergenic | 30.0% |
| !! | ATAACACCAAGTTGATAAGA+GGG | - | Chr6:69573148-69573167 | None:intergenic | 30.0% |
| AAGGGAATTAACTTTGATGC+AGG | + | Chr6:69573587-69573606 | MsG0680033617.01.T01:intron | 35.0% | |
| ATCGTAATCAAATCAAACCG+AGG | + | Chr6:69572847-69572866 | MsG0680033617.01.T01:intron | 35.0% | |
| CAATTGGAAAATCAACCATG+AGG | + | Chr6:69573351-69573370 | MsG0680033617.01.T01:intron | 35.0% | |
| CATGAGATCTGCTTATACTT+TGG | + | Chr6:69572484-69572503 | MsG0680033617.01.T01:CDS | 35.0% | |
| CTAGAGACAATTTCAACACA+AGG | + | Chr6:69573717-69573736 | MsG0680033617.01.T01:CDS | 35.0% | |
| CTATTGTTATGAACAAGCCA+AGG | + | Chr6:69572441-69572460 | MsG0680033617.01.T01:CDS | 35.0% | |
| GTCACATTCATTCTTACACT+TGG | - | Chr6:69572377-69572396 | None:intergenic | 35.0% | |
| TATCTATGGATTCCAATCAC+TGG | - | Chr6:69573644-69573663 | None:intergenic | 35.0% | |
| TCATTGAACTGGATTTAACC+AGG | - | Chr6:69572815-69572834 | None:intergenic | 35.0% | |
| TCCTAGTGATCCACATTTAA+GGG | + | Chr6:69573046-69573065 | MsG0680033617.01.T01:CDS | 35.0% | |
| ! | CTTTTACCACTAAGAACTTG+AGG | + | Chr6:69573310-69573329 | MsG0680033617.01.T01:intron | 35.0% |
| ! | GAAATTGTCTCTAGAAGATG+GGG | - | Chr6:69573711-69573730 | None:intergenic | 35.0% |
| ! | GGCTTGTTCATAACAATAGA+AGG | - | Chr6:69572440-69572459 | None:intergenic | 35.0% |
| !! | ATCTATCGGCTTTGATGATT+TGG | + | Chr6:69572585-69572604 | MsG0680033617.01.T01:intron | 35.0% |
| !! | GATAACACCAAGTTGATAAG+AGG | - | Chr6:69573149-69573168 | None:intergenic | 35.0% |
| AAATGTGGATCACTAGGACT+AGG | - | Chr6:69573044-69573063 | None:intergenic | 40.0% | |
| AGGATGGTTACAGATATTCC+AGG | + | Chr6:69573177-69573196 | MsG0680033617.01.T01:intron | 40.0% | |
| ATCACTCTTCCTACAGAAAG+TGG | - | Chr6:69572329-69572348 | None:intergenic | 40.0% | |
| ATTGATCCTAGGATAGAGAG+AGG | - | Chr6:69573230-69573249 | None:intergenic | 40.0% | |
| ATTTAAGGGAACATCTCCAC+TGG | + | Chr6:69573060-69573079 | MsG0680033617.01.T01:CDS | 40.0% | |
| CAAAAGGCAAAGATGAGAAC+CGG | + | Chr6:69572769-69572788 | MsG0680033617.01.T01:intron | 40.0% | |
| CTAACCAAAAGAGACATCTG+TGG | - | Chr6:69573205-69573224 | None:intergenic | 40.0% | |
| CTTTCTGTAGGAAGAGTGAT+AGG | + | Chr6:69572329-69572348 | MsG0680033617.01.T01:CDS | 40.0% | |
| GTCCTAGTGATCCACATTTA+AGG | + | Chr6:69573045-69573064 | MsG0680033617.01.T01:CDS | 40.0% | |
| GTGTTATCAATTTGCCAGGA+TGG | + | Chr6:69573161-69573180 | MsG0680033617.01.T01:intron | 40.0% | |
| TCAACCAAGCAAGTTGCAAA+TGG | + | Chr6:69572401-69572420 | MsG0680033617.01.T01:CDS | 40.0% | |
| TCATCTTGTTCAAGCAGAGA+AGG | + | Chr6:69573669-69573688 | MsG0680033617.01.T01:CDS | 40.0% | |
| TCCCTTAAATGTGGATCACT+AGG | - | Chr6:69573050-69573069 | None:intergenic | 40.0% | |
| TGATGCAGGAAATGAGATTG+TGG | + | Chr6:69573601-69573620 | MsG0680033617.01.T01:intron | 40.0% | |
| TGGAATATCTGTAACCATCC+TGG | - | Chr6:69573178-69573197 | None:intergenic | 40.0% | |
| TGGAGATGTTCCCTTAAATG+TGG | - | Chr6:69573059-69573078 | None:intergenic | 40.0% | |
| TTCTCACAGGAGAATAACCT+TGG | + | Chr6:69573743-69573762 | MsG0680033617.01.T01:CDS | 40.0% | |
| TTGAAGTAAACTGCAGCAAC+AGG | - | Chr6:69573773-69573792 | None:intergenic | 40.0% | |
| TTGATCCTAGGATAGAGAGA+GGG | - | Chr6:69573229-69573248 | None:intergenic | 40.0% | |
| ! | ATGACCATTTGCAACTTGCT+TGG | - | Chr6:69572408-69572427 | None:intergenic | 40.0% |
| !! | AACAAGCCAAGGGTTGATAT+TGG | + | Chr6:69572452-69572471 | MsG0680033617.01.T01:CDS | 40.0% |
| !! | CTTGGTGTTATCAATTTGCC+AGG | + | Chr6:69573157-69573176 | MsG0680033617.01.T01:intron | 40.0% |
| AAAGAGACATCTGTGGTACC+TGG | - | Chr6:69573198-69573217 | None:intergenic | 45.0% | |
| CAACACAAGGAGATTCTCAC+AGG | + | Chr6:69573730-69573749 | MsG0680033617.01.T01:CDS | 45.0% | |
| CCATTGGAACCACTTTCTGT+AGG | + | Chr6:69572317-69572336 | MsG0680033617.01.T01:CDS | 45.0% | |
| CCTACAGAAAGTGGTTCCAA+TGG | - | Chr6:69572320-69572339 | None:intergenic | 45.0% | |
| GAGAAACTGCAGCAAGAAGA+AGG | + | Chr6:69573801-69573820 | MsG0680033617.01.T01:CDS | 45.0% | |
| GAGAATCCAAAGCCAGTGAT+TGG | + | Chr6:69573629-69573648 | MsG0680033617.01.T01:CDS | 45.0% | |
| TAACCAGGTTAAACCGCAGT+TGG | - | Chr6:69572800-69572819 | None:intergenic | 45.0% | |
| TCACCACCAATATCAACCCT+TGG | - | Chr6:69572461-69572480 | None:intergenic | 45.0% | |
| TTAGTCCCTCTCTCTATCCT+AGG | + | Chr6:69573221-69573240 | MsG0680033617.01.T01:intron | 45.0% | |
| ! | GGTACCACAGATGTCTCTTT+TGG | + | Chr6:69573198-69573217 | MsG0680033617.01.T01:CDS | 45.0% |
| ! | TAAACCGCAGTTGGTTCAAC+CGG | - | Chr6:69572791-69572810 | None:intergenic | 45.0% |
| !! | AAGCCAAGGGTTGATATTGG+TGG | + | Chr6:69572455-69572474 | MsG0680033617.01.T01:CDS | 45.0% |
| !! | TGGATTCCAATCACTGGCTT+TGG | - | Chr6:69573638-69573657 | None:intergenic | 45.0% |
| !!! | ATAATTTAATTTTTTAACAA+AGG | + | Chr6:69573568-69573587 | MsG0680033617.01.T01:intron | 5.0% |
| !!! | TAATTTAATTTTTTAACAAA+GGG | + | Chr6:69573569-69573588 | MsG0680033617.01.T01:intron | 5.0% |
| AGAACCGGTTGAACCAACTG+CGG | + | Chr6:69572784-69572803 | MsG0680033617.01.T01:intron | 50.0% | |
| CTGCAGCAACAGGTAAACCA+AGG | - | Chr6:69573763-69573782 | None:intergenic | 50.0% | |
| GAACCAACTGCGGTTTAACC+TGG | + | Chr6:69572794-69572813 | MsG0680033617.01.T01:intron | 50.0% | |
| !! | CACTAGGACTAGGAGCATCT+GGG | - | Chr6:69573034-69573053 | None:intergenic | 50.0% |
| !! | TCACTAGGACTAGGAGCATC+TGG | - | Chr6:69573035-69573054 | None:intergenic | 50.0% |
| GCGGGAAGCAGTAAGTTCCT+CGG | - | Chr6:69572867-69572886 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 69572308 | 69573826 | 69572308 | ID=MsG0680033617.01;Name=MsG0680033617.01 |
| Chr6 | mRNA | 69572308 | 69573826 | 69572308 | ID=MsG0680033617.01.T01;Parent=MsG0680033617.01;Name=MsG0680033617.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|4|0|172 |
| Chr6 | exon | 69572308 | 69572505 | 69572308 | ID=MsG0680033617.01.T01:exon:2250;Parent=MsG0680033617.01.T01 |
| Chr6 | exon | 69573020 | 69573081 | 69573020 | ID=MsG0680033617.01.T01:exon:2249;Parent=MsG0680033617.01.T01 |
| Chr6 | exon | 69573179 | 69573219 | 69573179 | ID=MsG0680033617.01.T01:exon:2248;Parent=MsG0680033617.01.T01 |
| Chr6 | exon | 69573609 | 69573826 | 69573609 | ID=MsG0680033617.01.T01:exon:2247;Parent=MsG0680033617.01.T01 |
| Chr6 | CDS | 69572308 | 69572505 | 69572308 | ID=MsG0680033617.01.T01:cds;Parent=MsG0680033617.01.T01 |
| Chr6 | CDS | 69573020 | 69573081 | 69573020 | ID=MsG0680033617.01.T01:cds;Parent=MsG0680033617.01.T01 |
| Chr6 | CDS | 69573179 | 69573219 | 69573179 | ID=MsG0680033617.01.T01:cds;Parent=MsG0680033617.01.T01 |
| Chr6 | CDS | 69573609 | 69573826 | 69573609 | ID=MsG0680033617.01.T01:cds;Parent=MsG0680033617.01.T01 |
| Gene Sequence |
| Protein sequence |
