AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024116.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024116.01.T01 MTR_5g005850 95.137 329 16 0 1 329 1 329 0.0 653
MsG0580024116.01.T01 MTR_1g105020 56.135 326 136 4 7 329 2 323 2.07e-135 387
MsG0580024116.01.T01 MTR_5g005920 52.395 334 149 4 1 328 1 330 3.28e-125 362
MsG0580024116.01.T01 MTR_3g450680 50.915 328 159 2 2 328 5 331 2.56e-120 350
MsG0580024116.01.T01 MTR_8g040860 49.686 318 155 3 12 328 15 328 1.39e-109 322
MsG0580024116.01.T01 MTR_5g005900 50.920 326 156 3 6 328 2 326 3.34e-108 318
MsG0580024116.01.T01 MTR_7g051020 49.541 327 155 5 6 328 5 325 1.02e-105 312
MsG0580024116.01.T01 MTR_1g104930 50.462 325 152 5 6 328 5 322 5.51e-103 305
MsG0580024116.01.T01 MTR_1g104933 48.457 324 158 5 5 328 2 316 1.16e-92 279
MsG0580024116.01.T01 MTR_4g086510 44.109 331 166 9 3 328 1 317 1.13e-89 271
MsG0580024116.01.T01 MTR_4g086480 40.729 329 181 8 3 328 1 318 1.82e-87 266
MsG0580024116.01.T01 MTR_3g101420 42.492 313 172 5 16 328 10 314 4.85e-87 264
MsG0580024116.01.T01 MTR_7g056207 42.169 332 176 8 2 328 29 349 3.65e-85 261
MsG0580024116.01.T01 MTR_4g086470 42.378 328 176 7 3 328 1 317 1.10e-82 253
MsG0580024116.01.T01 MTR_4g086540 39.571 326 166 9 5 329 10 305 4.14e-75 234
MsG0580024116.01.T01 MTR_7g406880 32.530 332 191 14 20 328 28 349 5.00e-46 160
MsG0580024116.01.T01 MTR_4g050140 33.639 327 196 11 10 328 2 315 1.14e-45 158
MsG0580024116.01.T01 MTR_1g111280 31.361 338 207 12 4 328 17 342 3.29e-41 147
MsG0580024116.01.T01 MTR_1g102160 34.722 288 155 10 21 290 19 291 3.95e-39 141
MsG0580024116.01.T01 MTR_1g012430 29.808 312 202 7 20 328 10 307 1.31e-35 131
MsG0580024116.01.T01 MTR_7g107040 29.538 325 207 9 13 329 7 317 1.80e-35 131
MsG0580024116.01.T01 MTR_3g012440 28.882 322 200 9 10 311 4 316 4.86e-35 130
MsG0580024116.01.T01 MTR_1g102170 35.379 277 128 13 26 278 43 292 1.06e-34 129
MsG0580024116.01.T01 MTR_6g464120 32.075 265 158 7 26 280 29 281 6.32e-33 128
MsG0580024116.01.T01 MTR_0007s0520 31.498 327 179 15 8 315 13 313 5.71e-32 122
MsG0580024116.01.T01 MTR_6g464510 31.193 327 188 15 18 328 21 326 3.30e-31 120
MsG0580024116.01.T01 MTR_8g035540 36.946 203 116 5 21 217 9 205 1.51e-29 115
MsG0580024116.01.T01 MTR_8g035520 34.034 238 147 6 1 235 1 231 1.72e-29 115
MsG0580024116.01.T01 MTR_6g464320 29.787 329 187 14 21 328 20 325 2.35e-29 115
MsG0580024116.01.T01 MTR_6g065370 27.393 303 179 9 45 328 53 333 1.10e-27 110
MsG0580024116.01.T01 MTR_6g065400 28.956 297 182 8 45 328 53 333 2.52e-27 109
MsG0580024116.01.T01 MTR_6g065430 29.338 317 192 12 26 329 31 328 2.71e-27 109
MsG0580024116.01.T01 MTR_6g065340 28.912 294 170 8 45 328 64 328 3.06e-27 109
MsG0580024116.01.T01 MTR_6g464280 29.874 318 187 14 28 328 26 324 3.66e-26 106
MsG0580024116.01.T01 MTR_6g065120 27.425 299 185 9 45 328 54 335 4.53e-26 106
MsG0580024116.01.T01 MTR_6g065110 29.276 304 172 12 45 328 54 334 6.10e-26 106
MsG0580024116.01.T01 MTR_1g089310 27.914 326 189 11 26 328 38 340 8.33e-25 103
MsG0580024116.01.T01 MTR_1g089310 27.914 326 189 11 26 328 54 356 1.08e-24 103
MsG0580024116.01.T01 MTR_6g065270 27.243 301 186 7 45 328 51 335 1.25e-24 102
MsG0580024116.01.T01 MTR_8g035500 29.747 316 196 13 26 329 17 318 2.44e-24 101
MsG0580024116.01.T01 MTR_1g082210 26.780 295 177 9 26 299 38 314 1.15e-22 97.1
MsG0580024116.01.T01 MTR_7g093950 27.356 329 193 13 26 328 38 346 2.20e-22 96.3
MsG0580024116.01.T01 MTR_6g022710 27.138 269 153 9 73 307 155 414 1.21e-20 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024116.01.T01 AT1G47480 41.615 322 172 6 8 328 3 309 2.12e-84 258
MsG0580024116.01.T01 AT3G48690 38.037 326 188 6 10 328 2 320 6.73e-74 231
MsG0580024116.01.T01 AT3G48700 37.015 335 184 8 10 328 2 325 8.99e-74 231
MsG0580024116.01.T01 AT2G03550 39.744 312 174 8 19 328 11 310 1.03e-73 230
MsG0580024116.01.T01 AT1G49650 39.432 317 176 8 19 329 67 373 3.49e-69 221
MsG0580024116.01.T01 AT1G49640 36.677 319 180 7 18 329 11 314 5.38e-69 218
MsG0580024116.01.T01 AT1G19190 36.615 325 187 8 10 328 2 313 6.31e-68 215
MsG0580024116.01.T01 AT1G49660 37.654 324 187 8 12 329 4 318 2.53e-67 214
MsG0580024116.01.T01 AT5G16080 28.485 330 206 12 13 328 28 341 2.22e-34 129
MsG0580024116.01.T01 AT1G68620 37.156 218 118 9 5 217 15 218 1.86e-32 123
MsG0580024116.01.T01 AT5G06570 30.183 328 207 11 12 328 9 325 3.74e-31 120
MsG0580024116.01.T01 AT5G06570 30.183 328 207 11 12 328 9 325 3.74e-31 120
MsG0580024116.01.T01 AT5G06570 30.183 328 207 11 12 328 24 340 4.22e-31 120
MsG0580024116.01.T01 AT5G06570 30.183 328 207 11 12 328 24 340 4.22e-31 120
MsG0580024116.01.T01 AT3G63010 29.355 310 176 10 40 328 54 341 2.83e-28 112
MsG0580024116.01.T01 AT2G45600 32.099 243 145 8 21 256 16 245 7.72e-28 111
MsG0580024116.01.T01 AT3G05120 25.538 325 199 10 26 328 38 341 8.77e-26 105
MsG0580024116.01.T01 AT2G45610 36.275 204 116 7 21 217 17 213 3.29e-25 103
MsG0580024116.01.T01 AT5G62180 29.114 316 178 14 26 317 21 314 5.11e-24 100
MsG0580024116.01.T01 AT5G27320 24.768 323 202 10 26 328 38 339 7.20e-24 100
MsG0580024116.01.T01 AT5G23530 27.244 312 198 10 26 328 35 326 4.28e-23 98.2
MsG0580024116.01.T01 AT3G27320 26.950 282 157 11 66 307 120 392 5.36e-19 87.8
MsG0580024116.01.T01 AT3G27320 26.950 282 157 11 66 307 152 424 5.75e-19 87.8

Find 83 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAGCCCTTTCAGTTTC+AGG 0.147567 5:+1065878 None:intergenic
ACCAAACAATCTTAAAATAT+TGG 0.187945 5:-1066236 MsG0580024116.01.T01:CDS
AGAGAAAGATGGGAAATTTA+TGG 0.202750 5:+1066587 None:intergenic
TCAATACCACCCTTTGCATT+AGG 0.268477 5:+1066106 None:intergenic
GTTGGAGATAACAATATCTT+TGG 0.270943 5:+1066660 None:intergenic
TTATGGTTGTGATGAGATTT+TGG 0.278544 5:+1066604 None:intergenic
ATGGTTAACCCTTGTGCTAT+TGG 0.292071 5:-1066076 MsG0580024116.01.T01:CDS
CCAAACAATCTTAAAATATT+GGG 0.308904 5:-1066235 MsG0580024116.01.T01:CDS
CAATACCACCCTTTGCATTA+GGG 0.315934 5:+1066107 None:intergenic
GAGATATCGGTGGCAGAAAT+AGG 0.320408 5:+1066525 None:intergenic
TTCTCTTTCTATGCTACTGT+TGG 0.322296 5:+1066366 None:intergenic
GAACAATGGTTACTAGATTA+TGG 0.339427 5:-1066346 MsG0580024116.01.T01:CDS
TGCTATTGGTGCACCTCGTT+TGG 0.369221 5:-1066062 MsG0580024116.01.T01:CDS
TCTCTTTCTATGCTACTGTT+GGG 0.374626 5:+1066367 None:intergenic
TTCTATCTCTTTGTTAGTGT+TGG 0.374879 5:+1066792 None:intergenic
ATCTTTGTAGACACGGATAA+GGG 0.393114 5:+1066756 None:intergenic
TGAAGGGAAGGTGGGACTAT+TGG 0.393784 5:+1066706 None:intergenic
AGAGCTCATGAGACGTTCTA+TGG 0.394238 5:+1066729 None:intergenic
ATCTTTCTCTACTTTCATGC+TGG 0.397789 5:-1066574 MsG0580024116.01.T01:CDS
TCCACAGGTTCTGACCCAAT+TGG 0.432377 5:+1066175 None:intergenic
AAACTAAGAGGTTGAGATAT+CGG 0.440802 5:+1066512 None:intergenic
CATCTTTGTAGACACGGATA+AGG 0.447615 5:+1066755 None:intergenic
GCACCTCGTTTGGCTACACT+TGG 0.447850 5:-1066052 MsG0580024116.01.T01:CDS
CACCGGTTTGAGGGTCTTGA+AGG 0.455685 5:+1066689 None:intergenic
TGGATGAGACACCGGTTTGA+GGG 0.456049 5:+1066680 None:intergenic
CAAATTGAACTGTTTGAAGC+TGG 0.461438 5:-1065932 MsG0580024116.01.T01:CDS
TCTTCATACGCTGCAGGAAG+TGG 0.462960 5:+1066436 None:intergenic
TAAGATACTACTAACTATTA+CGG 0.468560 5:-1066023 MsG0580024116.01.T01:CDS
TCCCTTCAAGACCCTCAAAC+CGG 0.479102 5:-1066691 MsG0580024116.01.T01:CDS
TATTTGATTCAGAAACTAAG+AGG 0.480555 5:+1066500 None:intergenic
AAGGAAAATGCGAGCGGAAA+GGG 0.486871 5:+1066627 None:intergenic
CTATTCTCATGTTCCTCCAC+AGG 0.487531 5:+1066160 None:intergenic
CTCTTTCTATGCTACTGTTG+GGG 0.494405 5:+1066368 None:intergenic
ACAAGGATGAGTTTAGAGAC+AGG 0.495509 5:-1066000 MsG0580024116.01.T01:CDS
TTGGATGAGACACCGGTTTG+AGG 0.497332 5:+1066679 None:intergenic
GGAAAGGGAAGGGTTATTGT+TGG 0.501716 5:+1066642 None:intergenic
ATGGCTGGACTTCTCTCCAA+TGG 0.504612 5:-1066414 MsG0580024116.01.T01:CDS
CTTATCCGTGTCTACAAAGA+TGG 0.507805 5:-1066754 MsG0580024116.01.T01:CDS
TGGCTGGACTTCTCTCCAAT+GGG 0.516111 5:-1066413 MsG0580024116.01.T01:CDS
CTTCAAACCTGAAACTGAAA+GGG 0.522149 5:-1065885 MsG0580024116.01.T01:CDS
CATAACTTAGCTATGCGTGC+TGG 0.523161 5:-1066271 MsG0580024116.01.T01:CDS
GCATGAAAGTAGAGAAAGAT+GGG 0.525886 5:+1066577 None:intergenic
CTTCCTGCAGCGTATGAAGA+TGG 0.526273 5:-1066433 MsG0580024116.01.T01:CDS
TGAGGGTCTTGAAGGGAAGG+TGG 0.527034 5:+1066697 None:intergenic
CTGCAGCGTATGAAGATGGC+TGG 0.531124 5:-1066429 MsG0580024116.01.T01:CDS
GAGGGTCTTGAAGGGAAGGT+GGG 0.533703 5:+1066698 None:intergenic
CAGCCATCTTCATACGCTGC+AGG 0.539852 5:+1066430 None:intergenic
AGTTCCACACTTTAATTGCA+AGG 0.548053 5:+1066137 None:intergenic
TCTTCAAACCTGAAACTGAA+AGG 0.549310 5:-1065886 MsG0580024116.01.T01:CDS
GGGTGGTATTGATAATCCTA+TGG 0.558196 5:-1066095 MsG0580024116.01.T01:CDS
AGCATGAAAGTAGAGAAAGA+TGG 0.568844 5:+1066576 None:intergenic
GCCAATTGGGTCAGAACCTG+TGG 0.571949 5:-1066176 MsG0580024116.01.T01:CDS
CACCTCGTTTGGCTACACTT+GGG 0.582547 5:-1066051 MsG0580024116.01.T01:CDS
CTTTGTGTACCCTAATGCAA+AGG 0.582824 5:-1066116 MsG0580024116.01.T01:CDS
TTTGTGTACCCTAATGCAAA+GGG 0.584977 5:-1066115 MsG0580024116.01.T01:CDS
TTGTGTGAGAAGCAACCCAT+TGG 0.586149 5:+1066398 None:intergenic
ACCGGTTTGAGGGTCTTGAA+GGG 0.589706 5:+1066690 None:intergenic
AATATCTTTGGATGAGACAC+CGG 0.589989 5:+1066672 None:intergenic
GTTTGAGGGTCTTGAAGGGA+AGG 0.590300 5:+1066694 None:intergenic
CGAGGTGCACCAATAGCACA+AGG 0.595164 5:+1066067 None:intergenic
GAAGGAAAATGCGAGCGGAA+AGG 0.603268 5:+1066626 None:intergenic
TCGGTGGCAGAAATAGGAGA+AGG 0.605205 5:+1066531 None:intergenic
CAAGGATGAGTTTAGAGACA+GGG 0.611106 5:-1065999 MsG0580024116.01.T01:CDS
GATTTCAACAAAGTGTACAT+AGG 0.615690 5:-1066322 MsG0580024116.01.T01:CDS
AAATGCGAGCGGAAAGGGAA+GGG 0.618100 5:+1066632 None:intergenic
TACATAGGTGGTGACGTCAA+CGG 0.623168 5:-1066307 MsG0580024116.01.T01:CDS
ATAGCACAAGGGTTAACCAT+AGG 0.623696 5:+1066079 None:intergenic
GAAGCTGGAGATGAGGAACA+TGG 0.624108 5:-1065917 MsG0580024116.01.T01:CDS
ACTGTTTGAAGCTGGAGATG+AGG 0.632715 5:-1065924 MsG0580024116.01.T01:CDS
CGGTGGCAGAAATAGGAGAA+GGG 0.641940 5:+1066532 None:intergenic
TCTTTGTAGACACGGATAAG+GGG 0.645530 5:+1066757 None:intergenic
TGGTGCCATCTTTGTAGACA+CGG 0.645698 5:+1066749 None:intergenic
GCTGCAGGAAGTGGATGTTG+TGG 0.646696 5:+1066445 None:intergenic
AAAATGCGAGCGGAAAGGGA+AGG 0.656860 5:+1066631 None:intergenic
TTCAACAAAGTGTACATAGG+TGG 0.657663 5:-1066319 MsG0580024116.01.T01:CDS
ATAGCCTTGCAATTAAAGTG+TGG 0.658550 5:-1066141 MsG0580024116.01.T01:CDS
AATTGGGTCAGAACCTGTGG+AGG 0.661490 5:-1066173 MsG0580024116.01.T01:CDS
CACCCAAGTGTAGCCAAACG+AGG 0.667911 5:+1066049 None:intergenic
ACTACTAACTATTACGGACA+AGG 0.669291 5:-1066017 MsG0580024116.01.T01:CDS
GTGTACCCTAATGCAAAGGG+TGG 0.680529 5:-1066112 MsG0580024116.01.T01:CDS
GTAGCATAGAAAGAGAACAA+TGG 0.702505 5:-1066360 MsG0580024116.01.T01:CDS
CTAAGAGGTTGAGATATCGG+TGG 0.721949 5:+1066515 None:intergenic
GAGGTGCACCAATAGCACAA+GGG 0.778969 5:+1066068 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCAAACAATCTTAAAATAT+TGG - Chr5:1066419-1066438 MsG0580024116.01.T01:CDS 20.0%
!! CCAAACAATCTTAAAATATT+GGG - Chr5:1066420-1066439 MsG0580024116.01.T01:CDS 20.0%
!! TAAGATACTACTAACTATTA+CGG - Chr5:1066632-1066651 MsG0580024116.01.T01:CDS 20.0%
! TATTTGATTCAGAAACTAAG+AGG + Chr5:1066158-1066177 None:intergenic 25.0%
!!! CCCAATATTTTAAGATTGTT+TGG + Chr5:1066423-1066442 None:intergenic 25.0%
!!! TTACTATGTTGTCCTTTTTT+CGG - Chr5:1066447-1066466 MsG0580024116.01.T01:CDS 25.0%
AAACTAAGAGGTTGAGATAT+CGG + Chr5:1066146-1066165 None:intergenic 30.0%
AGAGAAAGATGGGAAATTTA+TGG + Chr5:1066071-1066090 None:intergenic 30.0%
GAACAATGGTTACTAGATTA+TGG - Chr5:1066309-1066328 MsG0580024116.01.T01:CDS 30.0%
GATTTCAACAAAGTGTACAT+AGG - Chr5:1066333-1066352 MsG0580024116.01.T01:CDS 30.0%
GTTGGAGATAACAATATCTT+TGG + Chr5:1065998-1066017 None:intergenic 30.0%
TTCTATCTCTTTGTTAGTGT+TGG + Chr5:1065866-1065885 None:intergenic 30.0%
TTGAGTCTGTTAGAAAAAGT+GGG - Chr5:1066691-1066710 MsG0580024116.01.T01:CDS 30.0%
TTTGAGTCTGTTAGAAAAAG+TGG - Chr5:1066690-1066709 MsG0580024116.01.T01:CDS 30.0%
! TTATGGTTGTGATGAGATTT+TGG + Chr5:1066054-1066073 None:intergenic 30.0%
!!! TACTATGTTGTCCTTTTTTC+GGG - Chr5:1066448-1066467 MsG0580024116.01.T01:CDS 30.0%
AATATCTTTGGATGAGACAC+CGG + Chr5:1065986-1066005 None:intergenic 35.0%
ACTACTAACTATTACGGACA+AGG - Chr5:1066638-1066657 MsG0580024116.01.T01:CDS 35.0%
AGCATGAAAGTAGAGAAAGA+TGG + Chr5:1066082-1066101 None:intergenic 35.0%
AGTTCCACACTTTAATTGCA+AGG + Chr5:1066521-1066540 None:intergenic 35.0%
ATCTTTCTCTACTTTCATGC+TGG - Chr5:1066081-1066100 MsG0580024116.01.T01:CDS 35.0%
ATCTTTGTAGACACGGATAA+GGG + Chr5:1065902-1065921 None:intergenic 35.0%
CTTCAAACCTGAAACTGAAA+GGG - Chr5:1066770-1066789 MsG0580024116.01.T01:CDS 35.0%
GCATGAAAGTAGAGAAAGAT+GGG + Chr5:1066081-1066100 None:intergenic 35.0%
GTAGCATAGAAAGAGAACAA+TGG - Chr5:1066295-1066314 MsG0580024116.01.T01:CDS 35.0%
TCTCTTTCTATGCTACTGTT+GGG + Chr5:1066291-1066310 None:intergenic 35.0%
TCTTCAAACCTGAAACTGAA+AGG - Chr5:1066769-1066788 MsG0580024116.01.T01:CDS 35.0%
TTCAACAAAGTGTACATAGG+TGG - Chr5:1066336-1066355 MsG0580024116.01.T01:CDS 35.0%
TTCTCTTTCTATGCTACTGT+TGG + Chr5:1066292-1066311 None:intergenic 35.0%
TTTGTGTACCCTAATGCAAA+GGG - Chr5:1066540-1066559 MsG0580024116.01.T01:CDS 35.0%
! ATAGCCTTGCAATTAAAGTG+TGG - Chr5:1066514-1066533 MsG0580024116.01.T01:CDS 35.0%
! CAAATTGAACTGTTTGAAGC+TGG - Chr5:1066723-1066742 MsG0580024116.01.T01:CDS 35.0%
!!! ACTATGTTGTCCTTTTTTCG+GGG - Chr5:1066449-1066468 MsG0580024116.01.T01:CDS 35.0%
ACAAGGATGAGTTTAGAGAC+AGG - Chr5:1066655-1066674 MsG0580024116.01.T01:CDS 40.0%
AGTCTGTTAGAAAAAGTGGG+TGG - Chr5:1066694-1066713 MsG0580024116.01.T01:CDS 40.0%
ATAGCACAAGGGTTAACCAT+AGG + Chr5:1066579-1066598 None:intergenic 40.0%
ATGGTTAACCCTTGTGCTAT+TGG - Chr5:1066579-1066598 MsG0580024116.01.T01:CDS 40.0%
CAAGGATGAGTTTAGAGACA+GGG - Chr5:1066656-1066675 MsG0580024116.01.T01:CDS 40.0%
CAATACCACCCTTTGCATTA+GGG + Chr5:1066551-1066570 None:intergenic 40.0%
CATCTTTGTAGACACGGATA+AGG + Chr5:1065903-1065922 None:intergenic 40.0%
CTCTTTCTATGCTACTGTTG+GGG + Chr5:1066290-1066309 None:intergenic 40.0%
CTTATCCGTGTCTACAAAGA+TGG - Chr5:1065901-1065920 MsG0580024116.01.T01:CDS 40.0%
CTTTGTGTACCCTAATGCAA+AGG - Chr5:1066539-1066558 MsG0580024116.01.T01:CDS 40.0%
TCAATACCACCCTTTGCATT+AGG + Chr5:1066552-1066571 None:intergenic 40.0%
TCTTTGTAGACACGGATAAG+GGG + Chr5:1065901-1065920 None:intergenic 40.0%
TGTTTAGCCCTTTCAGTTTC+AGG + Chr5:1066780-1066799 None:intergenic 40.0%
! GGTTGTGATGAGATTTTGGA+AGG + Chr5:1066050-1066069 None:intergenic 40.0%
!! GGGTGGTATTGATAATCCTA+TGG - Chr5:1066560-1066579 MsG0580024116.01.T01:CDS 40.0%
!! TTTTGGAAGGAAAATGCGAG+CGG + Chr5:1066037-1066056 None:intergenic 40.0%
!!! CTATGTTGTCCTTTTTTCGG+GGG - Chr5:1066450-1066469 MsG0580024116.01.T01:CDS 40.0%
AAGGAAAATGCGAGCGGAAA+GGG + Chr5:1066031-1066050 None:intergenic 45.0%
AGAGCTCATGAGACGTTCTA+TGG + Chr5:1065929-1065948 None:intergenic 45.0%
CATAACTTAGCTATGCGTGC+TGG - Chr5:1066384-1066403 MsG0580024116.01.T01:CDS 45.0%
CTAAGAGGTTGAGATATCGG+TGG + Chr5:1066143-1066162 None:intergenic 45.0%
CTATTCTCATGTTCCTCCAC+AGG + Chr5:1066498-1066517 None:intergenic 45.0%
GAGATATCGGTGGCAGAAAT+AGG + Chr5:1066133-1066152 None:intergenic 45.0%
GGAAAGGGAAGGGTTATTGT+TGG + Chr5:1066016-1066035 None:intergenic 45.0%
GTTAGAAAAAGTGGGTGGCA+AGG - Chr5:1066699-1066718 MsG0580024116.01.T01:CDS 45.0%
TTGTGTGAGAAGCAACCCAT+TGG + Chr5:1066260-1066279 None:intergenic 45.0%
! ACTGTTTGAAGCTGGAGATG+AGG - Chr5:1066731-1066750 MsG0580024116.01.T01:CDS 45.0%
! TACATAGGTGGTGACGTCAA+CGG - Chr5:1066348-1066367 MsG0580024116.01.T01:CDS 45.0%
!! TGGTGCCATCTTTGTAGACA+CGG + Chr5:1065909-1065928 None:intergenic 45.0%
AAAATGCGAGCGGAAAGGGA+AGG + Chr5:1066027-1066046 None:intergenic 50.0%
AAATGCGAGCGGAAAGGGAA+GGG + Chr5:1066026-1066045 None:intergenic 50.0%
AATTGGGTCAGAACCTGTGG+AGG - Chr5:1066482-1066501 MsG0580024116.01.T01:CDS 50.0%
ATGGCTGGACTTCTCTCCAA+TGG - Chr5:1066241-1066260 MsG0580024116.01.T01:CDS 50.0%
CACCTCGTTTGGCTACACTT+GGG - Chr5:1066604-1066623 MsG0580024116.01.T01:CDS 50.0%
CGGTGGCAGAAATAGGAGAA+GGG + Chr5:1066126-1066145 None:intergenic 50.0%
CTTCCTGCAGCGTATGAAGA+TGG - Chr5:1066222-1066241 MsG0580024116.01.T01:CDS 50.0%
GAAGCTGGAGATGAGGAACA+TGG - Chr5:1066738-1066757 MsG0580024116.01.T01:CDS 50.0%
GAAGGAAAATGCGAGCGGAA+AGG + Chr5:1066032-1066051 None:intergenic 50.0%
GAGGTGCACCAATAGCACAA+GGG + Chr5:1066590-1066609 None:intergenic 50.0%
GTGTACCCTAATGCAAAGGG+TGG - Chr5:1066543-1066562 MsG0580024116.01.T01:CDS 50.0%
GTTTGAGGGTCTTGAAGGGA+AGG + Chr5:1065964-1065983 None:intergenic 50.0%
TCCCTTCAAGACCCTCAAAC+CGG - Chr5:1065964-1065983 MsG0580024116.01.T01:CDS 50.0%
TCGGGGGTTCAAAGCCAATT+GGG - Chr5:1066466-1066485 MsG0580024116.01.T01:CDS 50.0%
TCGGTGGCAGAAATAGGAGA+AGG + Chr5:1066127-1066146 None:intergenic 50.0%
TCTTCATACGCTGCAGGAAG+TGG + Chr5:1066222-1066241 None:intergenic 50.0%
TGAAGGGAAGGTGGGACTAT+TGG + Chr5:1065952-1065971 None:intergenic 50.0%
TGCTATTGGTGCACCTCGTT+TGG - Chr5:1066593-1066612 MsG0580024116.01.T01:CDS 50.0%
TGGCTGGACTTCTCTCCAAT+GGG - Chr5:1066242-1066261 MsG0580024116.01.T01:CDS 50.0%
TTCGGGGGTTCAAAGCCAAT+TGG - Chr5:1066465-1066484 MsG0580024116.01.T01:CDS 50.0%
! TCCACAGGTTCTGACCCAAT+TGG + Chr5:1066483-1066502 None:intergenic 50.0%
!! ACCGGTTTGAGGGTCTTGAA+GGG + Chr5:1065968-1065987 None:intergenic 50.0%
!! GGCTTTGAACCCCCGAAAAA+AGG + Chr5:1066462-1066481 None:intergenic 50.0%
!! TGGATGAGACACCGGTTTGA+GGG + Chr5:1065978-1065997 None:intergenic 50.0%
!! TTGGATGAGACACCGGTTTG+AGG + Chr5:1065979-1065998 None:intergenic 50.0%
CACCCAAGTGTAGCCAAACG+AGG + Chr5:1066609-1066628 None:intergenic 55.0%
CAGCCATCTTCATACGCTGC+AGG + Chr5:1066228-1066247 None:intergenic 55.0%
CGAGGTGCACCAATAGCACA+AGG + Chr5:1066591-1066610 None:intergenic 55.0%
CTGCAGCGTATGAAGATGGC+TGG - Chr5:1066226-1066245 MsG0580024116.01.T01:CDS 55.0%
GAGGGTCTTGAAGGGAAGGT+GGG + Chr5:1065960-1065979 None:intergenic 55.0%
GCACCTCGTTTGGCTACACT+TGG - Chr5:1066603-1066622 MsG0580024116.01.T01:CDS 55.0%
GCCAATTGGGTCAGAACCTG+TGG - Chr5:1066479-1066498 MsG0580024116.01.T01:CDS 55.0%
GCTGCAGGAAGTGGATGTTG+TGG + Chr5:1066213-1066232 None:intergenic 55.0%
TGAGGGTCTTGAAGGGAAGG+TGG + Chr5:1065961-1065980 None:intergenic 55.0%
!! CACCGGTTTGAGGGTCTTGA+AGG + Chr5:1065969-1065988 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 1065844 1066833 1065844 ID=MsG0580024116.01;Name=MsG0580024116.01
Chr5 mRNA 1065844 1066833 1065844 ID=MsG0580024116.01.T01;Parent=MsG0580024116.01;Name=MsG0580024116.01.T01;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|329
Chr5 exon 1065844 1066833 1065844 ID=MsG0580024116.01.T01:exon:23282;Parent=MsG0580024116.01.T01
Chr5 CDS 1065844 1066833 1065844 ID=MsG0580024116.01.T01:cds;Parent=MsG0580024116.01.T01
Gene Sequence

>MsG0580024116.01.T01

ATGTCAATGAATTCTTCTTCCAACACTAACAAAGAGATAGAAAAAGAGCTTCTACCCCTTATCCGTGTCTACAAAGATGGCACCATAGAACGTCTCATGAGCTCTCCAATAGTCCCACCTTCCCTTCAAGACCCTCAAACCGGTGTCTCATCCAAAGATATTGTTATCTCCAACAATAACCCTTCCCTTTCCGCTCGCATTTTCCTTCCAAAATCTCATCACAACCATAAATTTCCCATCTTTCTCTACTTTCATGCTGGTGCTTTTTGTGTTGAATCACCCTTCTCCTATTTCTGCCACCGATATCTCAACCTCTTAGTTTCTGAATCAAATATAATAGCTGTTTCTGTAGATTACAGACTTCTTCCACAACATCCACTTCCTGCAGCGTATGAAGATGGCTGGACTTCTCTCCAATGGGTTGCTTCTCACACAAGTAATGACCCCAACAGTAGCATAGAAAGAGAACAATGGTTACTAGATTATGGTGATTTCAACAAAGTGTACATAGGTGGTGACGTCAACGGTGCTAATCTTGCTCATAACTTAGCTATGCGTGCTGGAGTTGAAACATTACCAAACAATCTTAAAATATTGGGAGCATTACTATGTTGTCCTTTTTTCGGGGGTTCAAAGCCAATTGGGTCAGAACCTGTGGAGGAACATGAGAATAGCCTTGCAATTAAAGTGTGGAACTTTGTGTACCCTAATGCAAAGGGTGGTATTGATAATCCTATGGTTAACCCTTGTGCTATTGGTGCACCTCGTTTGGCTACACTTGGGTGTTCTAAGATACTACTAACTATTACGGACAAGGATGAGTTTAGAGACAGGGATGTTTTGTATTTTGAGTCTGTTAGAAAAAGTGGGTGGCAAGGTCAAATTGAACTGTTTGAAGCTGGAGATGAGGAACATGGTTTTCAGATCTTCAAACCTGAAACTGAAAGGGCTAAACAATTTATCAAACGCTTAGCTTCTTTTCTTGTTTGA
Protein sequence

>MsG0580024116.01.T01

MSMNSSSNTNKEIEKELLPLIRVYKDGTIERLMSSPIVPPSLQDPQTGVSSKDIVISNNNPSLSARIFLPKSHHNHKFPIFLYFHAGAFCVESPFSYFCHRYLNLLVSESNIIAVSVDYRLLPQHPLPAAYEDGWTSLQWVASHTSNDPNSSIEREQWLLDYGDFNKVYIGGDVNGANLAHNLAMRAGVETLPNNLKILGALLCCPFFGGSKPIGSEPVEEHENSLAIKVWNFVYPNAKGGIDNPMVNPCAIGAPRLATLGCSKILLTITDKDEFRDRDVLYFESVRKSGWQGQIELFEAGDEEHGFQIFKPETERAKQFIKRLASFLV*