AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005648.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005648.01.T01 MTR_1g105020 96.308 325 10 1 1 325 1 323 0.0 641
MsG0180005648.01.T01 MTR_5g005850 56.135 326 138 4 2 325 7 329 1.09e-135 388
MsG0180005648.01.T01 MTR_3g450680 52.960 321 148 2 5 324 13 331 2.90e-119 347
MsG0180005648.01.T01 MTR_5g005920 50.610 328 153 4 2 324 7 330 3.25e-115 337
MsG0180005648.01.T01 MTR_7g051020 54.938 324 137 5 4 324 8 325 1.14e-114 335
MsG0180005648.01.T01 MTR_1g104930 54.799 323 136 5 4 324 8 322 5.45e-109 320
MsG0180005648.01.T01 MTR_5g005900 49.080 326 161 3 2 324 3 326 1.10e-108 320
MsG0180005648.01.T01 MTR_8g040860 49.686 318 156 2 7 324 15 328 1.87e-105 311
MsG0180005648.01.T01 MTR_1g104933 53.605 319 138 5 6 324 8 316 1.28e-103 306
MsG0180005648.01.T01 MTR_4g086510 44.207 328 168 8 1 324 1 317 2.66e-92 278
MsG0180005648.01.T01 MTR_4g086480 43.939 330 167 9 1 324 1 318 2.58e-89 270
MsG0180005648.01.T01 MTR_7g056207 42.945 326 171 8 3 324 35 349 4.10e-84 258
MsG0180005648.01.T01 MTR_4g086540 44.582 323 149 7 3 325 13 305 1.65e-83 255
MsG0180005648.01.T01 MTR_4g086470 43.887 319 167 7 7 324 10 317 2.92e-83 254
MsG0180005648.01.T01 MTR_3g101420 40.446 314 178 4 11 324 10 314 7.70e-83 253
MsG0180005648.01.T01 MTR_7g406880 34.731 334 182 12 15 324 28 349 1.14e-50 172
MsG0180005648.01.T01 MTR_1g111280 33.229 319 194 9 10 320 28 335 4.65e-50 170
MsG0180005648.01.T01 MTR_4g050140 33.333 330 194 10 5 324 2 315 3.90e-45 156
MsG0180005648.01.T01 MTR_1g012430 33.648 318 191 11 11 324 6 307 1.85e-41 146
MsG0180005648.01.T01 MTR_7g107040 31.230 317 199 11 15 325 14 317 7.03e-39 140
MsG0180005648.01.T01 MTR_3g012440 32.407 324 190 13 1 305 1 314 9.21e-37 135
MsG0180005648.01.T01 MTR_1g102160 41.379 203 101 6 44 239 48 239 3.85e-33 125
MsG0180005648.01.T01 MTR_8g035540 31.561 301 173 11 16 303 9 289 2.83e-32 122
MsG0180005648.01.T01 MTR_1g102170 35.146 239 130 7 46 274 69 292 6.11e-32 122
MsG0180005648.01.T01 MTR_0007s0520 33.755 237 136 8 21 249 26 249 1.93e-30 117
MsG0180005648.01.T01 MTR_6g464120 38.710 186 101 4 21 204 29 203 4.72e-30 119
MsG0180005648.01.T01 MTR_8g035520 30.573 314 202 9 16 322 21 325 2.06e-29 115
MsG0180005648.01.T01 MTR_6g065270 28.146 302 183 8 40 324 51 335 6.45e-29 114
MsG0180005648.01.T01 MTR_6g464510 31.834 289 175 9 44 324 52 326 2.18e-28 112
MsG0180005648.01.T01 MTR_6g065120 28.076 317 193 10 23 324 39 335 7.36e-28 111
MsG0180005648.01.T01 MTR_1g089310 29.236 301 167 10 8 297 49 314 8.37e-28 111
MsG0180005648.01.T01 MTR_1g089310 31.405 242 141 6 61 297 109 330 9.03e-28 111
MsG0180005648.01.T01 MTR_6g065340 28.378 296 170 9 40 324 64 328 1.05e-27 110
MsG0180005648.01.T01 MTR_6g065370 26.510 298 189 9 40 324 53 333 1.70e-26 107
MsG0180005648.01.T01 MTR_1g082210 29.431 299 167 9 21 297 38 314 1.87e-26 107
MsG0180005648.01.T01 MTR_6g464320 31.894 301 174 12 38 322 41 326 4.24e-26 106
MsG0180005648.01.T01 MTR_6g065400 26.756 299 187 10 40 324 53 333 2.03e-25 104
MsG0180005648.01.T01 MTR_6g065430 26.984 315 203 10 21 325 31 328 7.13e-25 102
MsG0180005648.01.T01 MTR_6g464280 35.912 181 101 4 38 213 40 210 8.12e-25 102
MsG0180005648.01.T01 MTR_6g065110 27.425 299 185 9 40 324 54 334 1.52e-24 102
MsG0180005648.01.T01 MTR_7g093950 27.879 330 191 12 21 324 38 346 3.06e-24 101
MsG0180005648.01.T01 MTR_8g035500 31.783 258 158 9 39 286 34 283 4.27e-24 100
MsG0180005648.01.T01 MTR_6g022710 29.804 255 144 7 62 284 146 397 4.36e-23 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005648.01.T01 AT1G47480 41.358 324 175 5 1 324 1 309 1.02e-79 245
MsG0180005648.01.T01 AT3G48700 38.415 328 186 8 7 324 4 325 3.43e-74 232
MsG0180005648.01.T01 AT2G03550 39.103 312 177 7 14 324 11 310 1.29e-73 229
MsG0180005648.01.T01 AT3G48690 40.184 326 178 9 7 324 4 320 4.75e-73 229
MsG0180005648.01.T01 AT1G19190 39.009 323 179 9 7 324 4 313 1.71e-70 222
MsG0180005648.01.T01 AT1G49650 38.994 318 179 8 13 325 66 373 2.61e-69 221
MsG0180005648.01.T01 AT1G49640 37.736 318 177 8 14 325 12 314 3.98e-69 218
MsG0180005648.01.T01 AT1G49660 38.226 327 182 9 7 325 4 318 4.20e-64 206
MsG0180005648.01.T01 AT1G68620 30.581 327 191 12 11 324 26 329 3.55e-39 141
MsG0180005648.01.T01 AT5G16080 30.675 326 199 11 11 324 31 341 7.20e-36 132
MsG0180005648.01.T01 AT3G05120 29.448 326 186 11 21 324 38 341 5.80e-34 127
MsG0180005648.01.T01 AT5G06570 32.177 317 200 8 15 324 17 325 5.18e-32 122
MsG0180005648.01.T01 AT5G06570 32.177 317 200 8 15 324 17 325 5.18e-32 122
MsG0180005648.01.T01 AT2G45600 33.333 285 162 8 21 297 21 285 5.18e-32 122
MsG0180005648.01.T01 AT3G63010 31.010 287 159 7 21 286 38 306 5.60e-32 122
MsG0180005648.01.T01 AT5G06570 32.177 317 200 8 15 324 32 340 7.84e-32 122
MsG0180005648.01.T01 AT5G06570 32.177 317 200 8 15 324 32 340 7.84e-32 122
MsG0180005648.01.T01 AT5G62180 33.226 310 176 12 21 314 21 315 2.49e-31 120
MsG0180005648.01.T01 AT5G27320 28.483 323 191 10 21 324 38 339 1.44e-30 118
MsG0180005648.01.T01 AT2G45610 29.641 334 207 10 8 324 1 323 2.32e-29 115
MsG0180005648.01.T01 AT5G23530 30.405 296 183 10 33 324 50 326 2.71e-29 115
MsG0180005648.01.T01 AT5G14310 28.627 255 149 5 62 284 140 393 2.23e-22 97.4

Find 63 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGAGACACCTGTTTC+TGG 0.105047 1:-94452637 None:intergenic
TCAATAGAATTCTGAGTTTC+AGG 0.180854 1:-94453441 None:intergenic
AAGTTCTCTGTCTATTTCTT+TGG 0.266373 1:-94452533 None:intergenic
TGAGTTTCGTTGGTGAGTTT+TGG 0.267278 1:-94452709 None:intergenic
GGCTATTGATGCTCCTAGTT+TGG 0.297036 1:+94453257 MsG0180005648.01.T01:CDS
ACAAAATTCCAAACTTTCAT+TGG 0.310236 1:-94453186 None:intergenic
AAAGTTCACCAATGAAAGTT+TGG 0.314743 1:+94453178 MsG0180005648.01.T01:CDS
GGAAGAGTTGAACGTTTCTT+AGG 0.316851 1:+94452583 MsG0180005648.01.T01:CDS
TAACCCTTTGATTAATCCTT+TGG 0.318593 1:+94453236 MsG0180005648.01.T01:CDS
TACATTGGTGGTGATACTTC+AGG 0.326467 1:+94453006 MsG0180005648.01.T01:CDS
GCTCCTAGTTTGGATATTAT+TGG 0.329779 1:+94453267 MsG0180005648.01.T01:CDS
TGAATACGTGCAGAGATTAA+TGG 0.334035 1:-94452682 None:intergenic
CTTCCTGCTGCTTATGATGA+TGG 0.347453 1:+94452883 MsG0180005648.01.T01:CDS
GGTGATGTCGTTGTTGTTGA+TGG 0.359693 1:-94452938 None:intergenic
ATTTAAGAGACAGAGGGATT+TGG 0.369398 1:+94453328 MsG0180005648.01.T01:CDS
TCAATTCCACCAGGTGCATC+AGG 0.374795 1:-94453213 None:intergenic
CCGGTCTTAGTTTACTATCA+TGG 0.375420 1:+94452739 MsG0180005648.01.T01:CDS
AACTCAGAATTCTATTGATA+TGG 0.381841 1:+94453446 MsG0180005648.01.T01:CDS
GAATACGTGCAGAGATTAAT+GGG 0.385636 1:-94452681 None:intergenic
GTTTCTGGATCAAGAGGAAT+TGG 0.389842 1:-94452622 None:intergenic
CAACGAAACTCAAAAGCTTC+CGG 0.432017 1:+94452720 MsG0180005648.01.T01:CDS
TCAACTGATTCTGACAAAAC+CGG 0.447965 1:-94453144 None:intergenic
GCAGCAGGAAGAGGGTGTTC+TGG 0.450690 1:-94452871 None:intergenic
ATTCCTCTTGATCCAGAAAC+AGG 0.456062 1:+94452625 MsG0180005648.01.T01:CDS
GCACTTCTTCGTGTTGGAAA+TGG 0.463279 1:+94453048 MsG0180005648.01.T01:CDS
CTGCTGCTTATGATGATGGT+TGG 0.469195 1:+94452887 MsG0180005648.01.T01:CDS
CTTCTCCGTGTCTACAAAGA+TGG 0.472650 1:+94452562 MsG0180005648.01.T01:CDS
CTTGTGAAGCAATGATGTTA+AGG 0.483989 1:-94452810 None:intergenic
TACGATGCTGTTAAGAAAAG+TGG 0.484998 1:+94453354 MsG0180005648.01.T01:CDS
TAGCCAAAGGATTAATCAAA+GGG 0.494694 1:-94453239 None:intergenic
GTGGAACTTGTTCATGTTGA+AGG 0.503646 1:+94453390 MsG0180005648.01.T01:CDS
CTCTTCCATCTTTGTAGACA+CGG 0.503735 1:-94452567 None:intergenic
CATAATGCACTTCTTCGTGT+TGG 0.518921 1:+94453042 MsG0180005648.01.T01:CDS
TCATCATAAGCAGCAGGAAG+AGG 0.537637 1:-94452880 None:intergenic
ATAGCCAAAGGATTAATCAA+AGG 0.543740 1:-94453240 None:intergenic
AATGATGATTTAAGAGACAG+AGG 0.549281 1:+94453321 MsG0180005648.01.T01:CDS
CAACCATCATCATAAGCAGC+AGG 0.553072 1:-94452886 None:intergenic
CCATGATAGTAAACTAAGAC+CGG 0.555089 1:-94452739 None:intergenic
CAACCAATAATATCCAAACT+AGG 0.558309 1:-94453270 None:intergenic
GGTTTCGAACTCCAAAATAG+AGG 0.560080 1:-94453123 None:intergenic
TCTGGATCAAGAGGAATTGG+TGG 0.577329 1:-94452619 None:intergenic
TTTGTGTACCCTGATGCACC+TGG 0.583326 1:+94453204 MsG0180005648.01.T01:CDS
ACACCTGTTTCTGGATCAAG+AGG 0.590140 1:-94452628 None:intergenic
TCACCGTGTTTGATTAACCA+TGG 0.590166 1:-94452970 None:intergenic
TGTTAAGGTAACGTTGGTGA+AGG 0.590388 1:-94452795 None:intergenic
GATTAACCATGGTTCAGCGT+TGG 0.595052 1:-94452959 None:intergenic
CATCATAAGCAGCAGGAAGA+GGG 0.596512 1:-94452879 None:intergenic
ATGCTGTTAAGAAAAGTGGT+TGG 0.598526 1:+94453358 MsG0180005648.01.T01:CDS
TTGTAGACACGGAGAAGAGG+TGG 0.600538 1:-94452556 None:intergenic
ATGATGATTTAAGAGACAGA+GGG 0.614435 1:+94453322 MsG0180005648.01.T01:CDS
CAATGATGTTAAGGTAACGT+TGG 0.616784 1:-94452801 None:intergenic
CAATTCCACCAGGTGCATCA+GGG 0.618557 1:-94453212 None:intergenic
AAGTGGTTGGAAAGGTGATG+TGG 0.619960 1:+94453371 MsG0180005648.01.T01:CDS
TCTTTGTAGACACGGAGAAG+AGG 0.629057 1:-94452559 None:intergenic
GACCCTCCTCAAATCAAACA+AGG 0.631296 1:-94453488 None:intergenic
CTAGGAGCATCAATAGCCAA+AGG 0.633527 1:-94453252 None:intergenic
AATGGTGTTGAAACTTTACC+TGG 0.648005 1:+94453066 MsG0180005648.01.T01:CDS
GTCTTAGTTTACTATCATGG+TGG 0.650549 1:+94452742 MsG0180005648.01.T01:CDS
ACATCACCAACGCTGAACCA+TGG 0.651686 1:+94452953 MsG0180005648.01.T01:CDS
GTTAAGAAAAGTGGTTGGAA+AGG 0.652072 1:+94453363 MsG0180005648.01.T01:CDS
GAACCATGGTTAATCAAACA+CGG 0.676776 1:+94452967 MsG0180005648.01.T01:CDS
GTGTACCCTGATGCACCTGG+TGG 0.678203 1:+94453207 MsG0180005648.01.T01:CDS
AAAGGGTTATCAATTCCACC+AGG 0.710635 1:-94453222 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AACTCAGAATTCTATTGATA+TGG + Chr1:94453446-94453465 MsG0180005648.01.T01:CDS 25.0%
! ACAAAATTCCAAACTTTCAT+TGG - Chr1:94453189-94453208 None:intergenic 25.0%
!!! TAAGATGTTGATTTTTGTTG+CGG + Chr1:94453296-94453315 MsG0180005648.01.T01:CDS 25.0%
AAAGTTCACCAATGAAAGTT+TGG + Chr1:94453178-94453197 MsG0180005648.01.T01:CDS 30.0%
AATGATGATTTAAGAGACAG+AGG + Chr1:94453321-94453340 MsG0180005648.01.T01:CDS 30.0%
ATAGCCAAAGGATTAATCAA+AGG - Chr1:94453243-94453262 None:intergenic 30.0%
ATGATGATTTAAGAGACAGA+GGG + Chr1:94453322-94453341 MsG0180005648.01.T01:CDS 30.0%
CAACCAATAATATCCAAACT+AGG - Chr1:94453273-94453292 None:intergenic 30.0%
GCAACAAAAATCAACATCTT+AGG - Chr1:94453297-94453316 None:intergenic 30.0%
TAACCCTTTGATTAATCCTT+TGG + Chr1:94453236-94453255 MsG0180005648.01.T01:CDS 30.0%
TAGCCAAAGGATTAATCAAA+GGG - Chr1:94453242-94453261 None:intergenic 30.0%
TATCACCACCAATGTAAAAA+CGG - Chr1:94453002-94453021 None:intergenic 30.0%
TCAATAGAATTCTGAGTTTC+AGG - Chr1:94453444-94453463 None:intergenic 30.0%
! AAGTTCTCTGTCTATTTCTT+TGG - Chr1:94452536-94452555 None:intergenic 30.0%
! TTTTGTCAGAATCAGTTGAA+GGG + Chr1:94453148-94453167 MsG0180005648.01.T01:CDS 30.0%
!! GATTTTGACCGTTTTTACAT+TGG + Chr1:94452991-94453010 MsG0180005648.01.T01:CDS 30.0%
!! TACTTGCTTTTCCTCTATTT+TGG + Chr1:94453112-94453131 MsG0180005648.01.T01:CDS 30.0%
!!! AAGATGTTGATTTTTGTTGC+GGG + Chr1:94453297-94453316 MsG0180005648.01.T01:CDS 30.0%
ATGCTGTTAAGAAAAGTGGT+TGG + Chr1:94453358-94453377 MsG0180005648.01.T01:CDS 35.0%
ATTTAAGAGACAGAGGGATT+TGG + Chr1:94453328-94453347 MsG0180005648.01.T01:CDS 35.0%
CAATGATGTTAAGGTAACGT+TGG - Chr1:94452804-94452823 None:intergenic 35.0%
CCATGATAGTAAACTAAGAC+CGG - Chr1:94452742-94452761 None:intergenic 35.0%
CCTGGTGAAGTAAAAATTAG+AGG + Chr1:94453084-94453103 MsG0180005648.01.T01:CDS 35.0%
CTTGTGAAGCAATGATGTTA+AGG - Chr1:94452813-94452832 None:intergenic 35.0%
GAACCATGGTTAATCAAACA+CGG + Chr1:94452967-94452986 MsG0180005648.01.T01:CDS 35.0%
GAATACGTGCAGAGATTAAT+GGG - Chr1:94452684-94452703 None:intergenic 35.0%
GCTCCTAGTTTGGATATTAT+TGG + Chr1:94453267-94453286 MsG0180005648.01.T01:CDS 35.0%
GTCTTAGTTTACTATCATGG+TGG + Chr1:94452742-94452761 MsG0180005648.01.T01:CDS 35.0%
GTTAAGAAAAGTGGTTGGAA+AGG + Chr1:94453363-94453382 MsG0180005648.01.T01:CDS 35.0%
TACGATGCTGTTAAGAAAAG+TGG + Chr1:94453354-94453373 MsG0180005648.01.T01:CDS 35.0%
TGAATACGTGCAGAGATTAA+TGG - Chr1:94452685-94452704 None:intergenic 35.0%
! AATGGTGTTGAAACTTTACC+TGG + Chr1:94453066-94453085 MsG0180005648.01.T01:CDS 35.0%
! CCTCTAATTTTTACTTCACC+AGG - Chr1:94453087-94453106 None:intergenic 35.0%
! GTTTTGTCAGAATCAGTTGA+AGG + Chr1:94453147-94453166 MsG0180005648.01.T01:CDS 35.0%
! TCAACTGATTCTGACAAAAC+CGG - Chr1:94453147-94453166 None:intergenic 35.0%
!! TTTGACCGTTTTTACATTGG+TGG + Chr1:94452994-94453013 MsG0180005648.01.T01:CDS 35.0%
!!! AGATGTTGATTTTTGTTGCG+GGG + Chr1:94453298-94453317 MsG0180005648.01.T01:CDS 35.0%
!!! ATGGTTGGTTTTCTCTCAAA+TGG + Chr1:94452902-94452921 MsG0180005648.01.T01:CDS 35.0%
!!! TCTATTTTGGAGTTCGAAAC+CGG + Chr1:94453125-94453144 MsG0180005648.01.T01:CDS 35.0%
AAAGGGTTATCAATTCCACC+AGG - Chr1:94453225-94453244 None:intergenic 40.0%
ATTCCTCTTGATCCAGAAAC+AGG + Chr1:94452625-94452644 MsG0180005648.01.T01:CDS 40.0%
CAACGAAACTCAAAAGCTTC+CGG + Chr1:94452720-94452739 MsG0180005648.01.T01:CDS 40.0%
CATAATGCACTTCTTCGTGT+TGG + Chr1:94453042-94453061 MsG0180005648.01.T01:CDS 40.0%
CCGGTCTTAGTTTACTATCA+TGG + Chr1:94452739-94452758 MsG0180005648.01.T01:CDS 40.0%
CTCTTCCATCTTTGTAGACA+CGG - Chr1:94452570-94452589 None:intergenic 40.0%
GGAAGAGTTGAACGTTTCTT+AGG + Chr1:94452583-94452602 MsG0180005648.01.T01:CDS 40.0%
GGTTTCGAACTCCAAAATAG+AGG - Chr1:94453126-94453145 None:intergenic 40.0%
TCACCGTGTTTGATTAACCA+TGG - Chr1:94452973-94452992 None:intergenic 40.0%
TTTGATGAGACACCTGTTTC+TGG - Chr1:94452640-94452659 None:intergenic 40.0%
! GTGGAACTTGTTCATGTTGA+AGG + Chr1:94453390-94453409 MsG0180005648.01.T01:CDS 40.0%
! GTTTCTGGATCAAGAGGAAT+TGG - Chr1:94452625-94452644 None:intergenic 40.0%
! TGTTAAGGTAACGTTGGTGA+AGG - Chr1:94452798-94452817 None:intergenic 40.0%
!! GAGTTTCGTTGGTGAGTTTT+GGG - Chr1:94452711-94452730 None:intergenic 40.0%
!! TACATTGGTGGTGATACTTC+AGG + Chr1:94453006-94453025 MsG0180005648.01.T01:CDS 40.0%
!! TGAGTTTCGTTGGTGAGTTT+TGG - Chr1:94452712-94452731 None:intergenic 40.0%
AAGTGGTTGGAAAGGTGATG+TGG + Chr1:94453371-94453390 MsG0180005648.01.T01:CDS 45.0%
CAACCATCATCATAAGCAGC+AGG - Chr1:94452889-94452908 None:intergenic 45.0%
CATCATAAGCAGCAGGAAGA+GGG - Chr1:94452882-94452901 None:intergenic 45.0%
CTTCTCCGTGTCTACAAAGA+TGG + Chr1:94452562-94452581 MsG0180005648.01.T01:CDS 45.0%
GATTAACCATGGTTCAGCGT+TGG - Chr1:94452962-94452981 None:intergenic 45.0%
GCACTTCTTCGTGTTGGAAA+TGG + Chr1:94453048-94453067 MsG0180005648.01.T01:CDS 45.0%
GGCTATTGATGCTCCTAGTT+TGG + Chr1:94453257-94453276 MsG0180005648.01.T01:CDS 45.0%
TCATCATAAGCAGCAGGAAG+AGG - Chr1:94452883-94452902 None:intergenic 45.0%
TCTGGATCAAGAGGAATTGG+TGG - Chr1:94452622-94452641 None:intergenic 45.0%
TCTTTGTAGACACGGAGAAG+AGG - Chr1:94452562-94452581 None:intergenic 45.0%
! CTTCCTGCTGCTTATGATGA+TGG + Chr1:94452883-94452902 MsG0180005648.01.T01:CDS 45.0%
! GGTGATGTCGTTGTTGTTGA+TGG - Chr1:94452941-94452960 None:intergenic 45.0%
!! ACACCTGTTTCTGGATCAAG+AGG - Chr1:94452631-94452650 None:intergenic 45.0%
!! CTAGGAGCATCAATAGCCAA+AGG - Chr1:94453255-94453274 None:intergenic 45.0%
!! CTGCTGCTTATGATGATGGT+TGG + Chr1:94452887-94452906 MsG0180005648.01.T01:CDS 45.0%
!!! CGGAAGCTTTTGAGTTTCGT+TGG - Chr1:94452722-94452741 None:intergenic 45.0%
!!! TTTCGTTGGTGAGTTTTGGG+AGG - Chr1:94452708-94452727 None:intergenic 45.0%
ACATCACCAACGCTGAACCA+TGG + Chr1:94452953-94452972 MsG0180005648.01.T01:CDS 50.0%
CAATTCCACCAGGTGCATCA+GGG - Chr1:94453215-94453234 None:intergenic 50.0%
TCAATTCCACCAGGTGCATC+AGG - Chr1:94453216-94453235 None:intergenic 50.0%
TTGTAGACACGGAGAAGAGG+TGG - Chr1:94452559-94452578 None:intergenic 50.0%
TTTGTGTACCCTGATGCACC+TGG + Chr1:94453204-94453223 MsG0180005648.01.T01:CDS 50.0%
GTGTACCCTGATGCACCTGG+TGG + Chr1:94453207-94453226 MsG0180005648.01.T01:CDS 60.0%
!! GCAGCAGGAAGAGGGTGTTC+TGG - Chr1:94452874-94452893 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 94452520 94453497 94452520 ID=MsG0180005648.01;Name=MsG0180005648.01
Chr1 mRNA 94452520 94453497 94452520 ID=MsG0180005648.01.T01;Parent=MsG0180005648.01;Name=MsG0180005648.01.T01;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|325
Chr1 exon 94452520 94453497 94452520 ID=MsG0180005648.01.T01:exon:19192;Parent=MsG0180005648.01.T01
Chr1 CDS 94452520 94453497 94452520 ID=MsG0180005648.01.T01:cds;Parent=MsG0180005648.01.T01
Gene Sequence

>MsG0180005648.01.T01

ATGGCTTCTTCAACCAAAGAAATAGACAGAGAACTTCCACCTCTTCTCCGTGTCTACAAAGATGGAAGAGTTGAACGTTTCTTAGGCTCTAAAATCGTACCACCAATTCCTCTTGATCCAGAAACAGGTGTCTCATCAAAAGACATAATCATTTCACAAAACCCATTAATCTCTGCACGTATTCACCTCCCAAAACTCACCAACGAAACTCAAAAGCTTCCGGTCTTAGTTTACTATCATGGTGGTGCTTTTTGTCTTGAATCAGCTTTTTCTTTCCTTCACCAACGTTACCTTAACATCATTGCTTCACAAGCAAATGTTCTTGTTGTTTCTGTTGAATATAGACTTGCACCAGAACACCCTCTTCCTGCTGCTTATGATGATGGTTGGTTTTCTCTCAAATGGATCACTTCTCATTCCATCAACAACAACGACATCACCAACGCTGAACCATGGTTAATCAAACACGGTGATTTTGACCGTTTTTACATTGGTGGTGATACTTCAGGTGCAAATATTGCACATAATGCACTTCTTCGTGTTGGAAATGGTGTTGAAACTTTACCTGGTGAAGTAAAAATTAGAGGAGCATTACTTGCTTTTCCTCTATTTTGGAGTTCGAAACCGGTTTTGTCAGAATCAGTTGAAGGGCATGAACAAAGTTCACCAATGAAAGTTTGGAATTTTGTGTACCCTGATGCACCTGGTGGAATTGATAACCCTTTGATTAATCCTTTGGCTATTGATGCTCCTAGTTTGGATATTATTGGTTGTCCTAAGATGTTGATTTTTGTTGCGGGGAATGATGATTTAAGAGACAGAGGGATTTGGTACTACGATGCTGTTAAGAAAAGTGGTTGGAAAGGTGATGTGGAACTTGTTCATGTTGAAGGTGAAGAACATTGTTTTCAGATTTATCATCCTGAAACTCAGAATTCTATTGATATGGTCAAACGTATTGCTTCTTTCCTTGTTTGA

Protein sequence

>MsG0180005648.01.T01

MASSTKEIDRELPPLLRVYKDGRVERFLGSKIVPPIPLDPETGVSSKDIIISQNPLISARIHLPKLTNETQKLPVLVYYHGGAFCLESAFSFLHQRYLNIIASQANVLVVSVEYRLAPEHPLPAAYDDGWFSLKWITSHSINNNDITNAEPWLIKHGDFDRFYIGGDTSGANIAHNALLRVGNGVETLPGEVKIRGALLAFPLFWSSKPVLSESVEGHEQSSPMKVWNFVYPDAPGGIDNPLINPLAIDAPSLDIIGCPKMLIFVAGNDDLRDRGIWYYDAVKKSGWKGDVELVHVEGEEHCFQIYHPETQNSIDMVKRIASFLV*