Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024118.01.T01 | XP_003610685.1 | 95.783 | 332 | 14 | 0 | 1 | 332 | 1 | 332 | 0 | 666 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024118.01.T01 | Q5NUF4 | 54.518 | 332 | 144 | 3 | 1 | 330 | 1 | 327 | 4.45E-126 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024118.01.T01 | G7K2A9 | 95.783 | 332 | 14 | 0 | 1 | 332 | 1 | 332 | 0.0 | 666 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580024118.01 | MsG0180005648.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024118.01.T01 | MTR_5g005920 | 95.783 | 332 | 14 | 0 | 1 | 332 | 1 | 332 | 0.0 | 666 |
| MsG0580024118.01.T01 | MTR_5g005900 | 60.542 | 332 | 120 | 5 | 7 | 332 | 2 | 328 | 2.75e-135 | 387 |
| MsG0580024118.01.T01 | MTR_5g005850 | 52.695 | 334 | 148 | 4 | 1 | 330 | 1 | 328 | 3.90e-124 | 359 |
| MsG0580024118.01.T01 | MTR_7g051020 | 52.695 | 334 | 149 | 5 | 1 | 332 | 1 | 327 | 4.54e-120 | 349 |
| MsG0580024118.01.T01 | MTR_3g450680 | 49.704 | 338 | 159 | 5 | 1 | 332 | 1 | 333 | 3.08e-118 | 344 |
| MsG0580024118.01.T01 | MTR_1g105020 | 51.227 | 326 | 152 | 3 | 7 | 330 | 2 | 322 | 5.86e-117 | 341 |
| MsG0580024118.01.T01 | MTR_8g040860 | 51.923 | 312 | 145 | 2 | 21 | 332 | 24 | 330 | 1.69e-113 | 332 |
| MsG0580024118.01.T01 | MTR_1g104930 | 52.096 | 334 | 148 | 5 | 1 | 332 | 1 | 324 | 4.97e-110 | 323 |
| MsG0580024118.01.T01 | MTR_1g104933 | 51.242 | 322 | 146 | 4 | 11 | 332 | 8 | 318 | 3.12e-101 | 301 |
| MsG0580024118.01.T01 | MTR_4g086480 | 40.841 | 333 | 181 | 10 | 1 | 331 | 1 | 319 | 5.89e-81 | 249 |
| MsG0580024118.01.T01 | MTR_4g086510 | 37.805 | 328 | 193 | 8 | 6 | 332 | 2 | 319 | 1.73e-74 | 233 |
| MsG0580024118.01.T01 | MTR_3g101420 | 37.695 | 321 | 186 | 6 | 14 | 332 | 8 | 316 | 2.98e-74 | 232 |
| MsG0580024118.01.T01 | MTR_7g056207 | 36.970 | 330 | 189 | 9 | 6 | 330 | 34 | 349 | 4.04e-70 | 222 |
| MsG0580024118.01.T01 | MTR_4g086470 | 39.210 | 329 | 187 | 9 | 5 | 332 | 3 | 319 | 2.20e-69 | 219 |
| MsG0580024118.01.T01 | MTR_4g086540 | 37.879 | 330 | 171 | 11 | 4 | 332 | 10 | 306 | 1.01e-63 | 204 |
| MsG0580024118.01.T01 | MTR_4g050140 | 33.333 | 330 | 199 | 11 | 10 | 332 | 2 | 317 | 4.12e-44 | 154 |
| MsG0580024118.01.T01 | MTR_7g107040 | 30.982 | 326 | 205 | 9 | 13 | 332 | 7 | 318 | 4.38e-41 | 146 |
| MsG0580024118.01.T01 | MTR_7g406880 | 28.963 | 328 | 208 | 10 | 23 | 332 | 31 | 351 | 5.57e-39 | 141 |
| MsG0580024118.01.T01 | MTR_1g111280 | 28.916 | 332 | 210 | 9 | 6 | 326 | 19 | 335 | 7.25e-38 | 138 |
| MsG0580024118.01.T01 | MTR_8g035520 | 30.631 | 333 | 212 | 10 | 1 | 323 | 1 | 324 | 4.22e-37 | 135 |
| MsG0580024118.01.T01 | MTR_3g012440 | 34.154 | 325 | 179 | 14 | 9 | 311 | 3 | 314 | 5.61e-37 | 135 |
| MsG0580024118.01.T01 | MTR_8g035540 | 37.696 | 191 | 113 | 4 | 25 | 212 | 13 | 200 | 1.57e-34 | 129 |
| MsG0580024118.01.T01 | MTR_1g102170 | 33.088 | 272 | 145 | 11 | 26 | 280 | 43 | 294 | 5.92e-34 | 127 |
| MsG0580024118.01.T01 | MTR_6g464120 | 31.818 | 264 | 155 | 7 | 20 | 271 | 23 | 273 | 4.17e-33 | 128 |
| MsG0580024118.01.T01 | MTR_1g102160 | 29.368 | 269 | 167 | 7 | 21 | 276 | 19 | 277 | 4.34e-32 | 122 |
| MsG0580024118.01.T01 | MTR_1g012430 | 28.889 | 315 | 205 | 8 | 21 | 332 | 11 | 309 | 2.91e-30 | 117 |
| MsG0580024118.01.T01 | MTR_6g464510 | 25.077 | 323 | 212 | 12 | 20 | 330 | 22 | 326 | 1.43e-28 | 113 |
| MsG0580024118.01.T01 | MTR_0007s0520 | 28.571 | 238 | 152 | 6 | 21 | 251 | 21 | 247 | 9.27e-28 | 110 |
| MsG0580024118.01.T01 | MTR_8g035500 | 28.723 | 282 | 185 | 9 | 26 | 299 | 17 | 290 | 1.04e-27 | 110 |
| MsG0580024118.01.T01 | MTR_6g065400 | 27.586 | 319 | 204 | 10 | 26 | 332 | 32 | 335 | 1.14e-27 | 110 |
| MsG0580024118.01.T01 | MTR_1g089310 | 28.571 | 350 | 197 | 12 | 1 | 313 | 1 | 334 | 1.18e-27 | 110 |
| MsG0580024118.01.T01 | MTR_1g089310 | 28.571 | 350 | 197 | 12 | 1 | 313 | 17 | 350 | 1.64e-27 | 110 |
| MsG0580024118.01.T01 | MTR_6g464280 | 27.907 | 301 | 186 | 12 | 44 | 330 | 41 | 324 | 2.83e-27 | 109 |
| MsG0580024118.01.T01 | MTR_1g082210 | 27.437 | 277 | 172 | 7 | 40 | 302 | 54 | 315 | 4.16e-26 | 106 |
| MsG0580024118.01.T01 | MTR_6g065370 | 26.480 | 321 | 205 | 10 | 26 | 332 | 32 | 335 | 8.91e-26 | 105 |
| MsG0580024118.01.T01 | MTR_6g464320 | 26.688 | 311 | 187 | 12 | 43 | 330 | 33 | 325 | 3.64e-25 | 103 |
| MsG0580024118.01.T01 | MTR_7g093950 | 29.070 | 344 | 193 | 16 | 9 | 323 | 25 | 346 | 7.45e-25 | 103 |
| MsG0580024118.01.T01 | MTR_6g065270 | 25.767 | 326 | 207 | 10 | 25 | 332 | 29 | 337 | 1.86e-23 | 99.4 |
| MsG0580024118.01.T01 | MTR_6g065120 | 25.581 | 301 | 194 | 9 | 45 | 332 | 54 | 337 | 3.70e-23 | 98.6 |
| MsG0580024118.01.T01 | MTR_6g065110 | 27.243 | 301 | 190 | 9 | 42 | 330 | 51 | 334 | 8.67e-23 | 97.4 |
| MsG0580024118.01.T01 | MTR_6g065430 | 25.316 | 316 | 208 | 10 | 25 | 330 | 30 | 327 | 1.74e-21 | 93.6 |
| MsG0580024118.01.T01 | MTR_6g065340 | 25.087 | 287 | 183 | 7 | 45 | 325 | 64 | 324 | 9.29e-21 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024118.01.T01 | AT1G47480 | 37.538 | 325 | 187 | 7 | 8 | 332 | 3 | 311 | 1.57e-71 | 224 |
| MsG0580024118.01.T01 | AT2G03550 | 37.538 | 325 | 187 | 8 | 10 | 332 | 2 | 312 | 5.25e-69 | 218 |
| MsG0580024118.01.T01 | AT1G19190 | 34.891 | 321 | 198 | 6 | 13 | 332 | 5 | 315 | 5.87e-67 | 213 |
| MsG0580024118.01.T01 | AT3G48690 | 37.304 | 319 | 186 | 7 | 19 | 331 | 11 | 321 | 2.34e-65 | 209 |
| MsG0580024118.01.T01 | AT3G48700 | 34.557 | 327 | 201 | 8 | 13 | 331 | 5 | 326 | 3.85e-65 | 209 |
| MsG0580024118.01.T01 | AT1G49650 | 37.261 | 314 | 187 | 7 | 19 | 330 | 67 | 372 | 1.89e-60 | 198 |
| MsG0580024118.01.T01 | AT1G49660 | 35.202 | 321 | 197 | 8 | 13 | 330 | 5 | 317 | 1.34e-58 | 191 |
| MsG0580024118.01.T01 | AT1G49640 | 33.544 | 316 | 194 | 8 | 18 | 330 | 11 | 313 | 3.40e-58 | 190 |
| MsG0580024118.01.T01 | AT2G45600 | 31.475 | 305 | 179 | 12 | 20 | 313 | 15 | 300 | 8.82e-36 | 132 |
| MsG0580024118.01.T01 | AT3G63010 | 30.990 | 313 | 168 | 11 | 40 | 320 | 54 | 350 | 2.10e-34 | 129 |
| MsG0580024118.01.T01 | AT5G06570 | 30.514 | 331 | 202 | 12 | 13 | 330 | 25 | 340 | 6.80e-32 | 122 |
| MsG0580024118.01.T01 | AT5G06570 | 30.514 | 331 | 202 | 12 | 13 | 330 | 25 | 340 | 6.80e-32 | 122 |
| MsG0580024118.01.T01 | AT5G06570 | 30.816 | 331 | 201 | 13 | 13 | 330 | 10 | 325 | 6.99e-32 | 122 |
| MsG0580024118.01.T01 | AT5G06570 | 30.816 | 331 | 201 | 13 | 13 | 330 | 10 | 325 | 6.99e-32 | 122 |
| MsG0580024118.01.T01 | AT5G16080 | 28.013 | 307 | 200 | 10 | 23 | 322 | 38 | 330 | 2.18e-30 | 118 |
| MsG0580024118.01.T01 | AT5G27320 | 28.803 | 309 | 186 | 9 | 9 | 302 | 25 | 314 | 2.71e-30 | 118 |
| MsG0580024118.01.T01 | AT1G68620 | 28.716 | 296 | 185 | 10 | 2 | 287 | 9 | 288 | 6.61e-30 | 117 |
| MsG0580024118.01.T01 | AT5G62180 | 29.492 | 295 | 184 | 10 | 26 | 309 | 21 | 302 | 4.54e-29 | 114 |
| MsG0580024118.01.T01 | AT3G05120 | 30.325 | 277 | 157 | 8 | 44 | 302 | 58 | 316 | 1.18e-28 | 113 |
| MsG0580024118.01.T01 | AT5G23530 | 28.115 | 313 | 200 | 10 | 26 | 332 | 35 | 328 | 2.78e-25 | 104 |
| MsG0580024118.01.T01 | AT2G45610 | 24.138 | 319 | 223 | 10 | 20 | 330 | 16 | 323 | 2.81e-25 | 103 |
Find 87 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCACTGTTTATGGGATTT+TGG | 0.138521 | 5:-1074341 | None:intergenic |
| GATCCAAGGGTCACTGTTTA+TGG | 0.170002 | 5:-1074349 | None:intergenic |
| ATGATCAATCCATTGGCTTC+TGG | 0.170709 | 5:+1074630 | MsG0580024118.01.T01:CDS |
| ATCTTAACCACCCTTACTTT+TGG | 0.187572 | 5:+1074499 | MsG0580024118.01.T01:CDS |
| CCTGGTGGTGTTAAAGTATT+TGG | 0.221900 | 5:+1074471 | MsG0580024118.01.T01:CDS |
| GCAAGGATCACCTTCTCTTT+AGG | 0.226174 | 5:+1074706 | MsG0580024118.01.T01:CDS |
| CAAGGATCACCTTCTCTTTA+GGG | 0.259031 | 5:+1074707 | MsG0580024118.01.T01:CDS |
| TAAAAGATTCATAAAAGTTT+TGG | 0.273579 | 5:+1074851 | MsG0580024118.01.T01:CDS |
| TGGCTACACTTGGTTGTTCC+AGG | 0.276606 | 5:+1074664 | MsG0580024118.01.T01:CDS |
| ATTGGAAAAGACAATGTCTT+TGG | 0.283110 | 5:-1074046 | None:intergenic |
| ATAGGGGAAGAACCTATTAT+TGG | 0.294412 | 5:+1074534 | MsG0580024118.01.T01:CDS |
| GGCTTCTGGGGCACCTAGTT+TGG | 0.294965 | 5:+1074644 | MsG0580024118.01.T01:CDS |
| GGAACAATTGGAAAGTTTCT+TGG | 0.304754 | 5:-1073988 | None:intergenic |
| CATCATTATAGACAACTAAA+TGG | 0.313020 | 5:-1073951 | None:intergenic |
| ATAATAGGTTCTTCCCCTAT+TGG | 0.314302 | 5:-1074531 | None:intergenic |
| TTGAGGAGACTTTGCAATCT+AGG | 0.316680 | 5:+1074559 | MsG0580024118.01.T01:CDS |
| AAAGTTTCTTGGACGATCTA+TGG | 0.320601 | 5:-1073977 | None:intergenic |
| TGATCAATCCATTGGCTTCT+GGG | 0.348380 | 5:+1074631 | MsG0580024118.01.T01:CDS |
| AGACTTTGCAATCTAGGATA+TGG | 0.355937 | 5:+1074565 | MsG0580024118.01.T01:CDS |
| TGGAGCATTTCTATGTTCTA+TGG | 0.358886 | 5:-1074250 | None:intergenic |
| GTCTCCTCAAATCCAATAAT+AGG | 0.359051 | 5:-1074546 | None:intergenic |
| ATTGTTGGGATGGTCTCTAT+TGG | 0.385390 | 5:+1074301 | MsG0580024118.01.T01:CDS |
| ATCATTATAGACAACTAAAT+GGG | 0.392307 | 5:-1073950 | None:intergenic |
| TTTGCATACCCTTCTGCTCC+TGG | 0.392413 | 5:+1074591 | MsG0580024118.01.T01:CDS |
| TCTTGTTGTGGAGGAACAAT+TGG | 0.395291 | 5:-1074000 | None:intergenic |
| TTTGGGGTGCAAAACCAATA+GGG | 0.395449 | 5:+1074517 | MsG0580024118.01.T01:CDS |
| CTGCAGGTTATAATGATTGT+TGG | 0.397408 | 5:+1074286 | MsG0580024118.01.T01:CDS |
| TTGTTGGGATGGTCTCTATT+GGG | 0.400381 | 5:+1074302 | MsG0580024118.01.T01:CDS |
| TCATTGGAATGTGTTAGTTT+TGG | 0.403519 | 5:-1074099 | None:intergenic |
| CAACAAGAGGACCCTAAAAC+TGG | 0.404109 | 5:+1074015 | MsG0580024118.01.T01:CDS |
| GAAGCCAATGGATTGATCAT+AGG | 0.409690 | 5:-1074627 | None:intergenic |
| AGAACCTATTATTGGATTTG+AGG | 0.413040 | 5:+1074542 | MsG0580024118.01.T01:CDS |
| AGCAGTGAGGTAAGGGTCAT+TGG | 0.415514 | 5:-1074064 | None:intergenic |
| CATTTAGTTGTCTATAATGA+TGG | 0.419354 | 5:+1073952 | MsG0580024118.01.T01:CDS |
| ATCCAAGGGTCACTGTTTAT+GGG | 0.420812 | 5:-1074348 | None:intergenic |
| GAGTGGATGGAAAGGGGAAG+TGG | 0.423194 | 5:+1074764 | MsG0580024118.01.T01:CDS |
| AGGTTGCTTATTACTGCTGC+TGG | 0.434549 | 5:+1074684 | MsG0580024118.01.T01:CDS |
| TGCAGGTTATAATGATTGTT+GGG | 0.445059 | 5:+1074287 | MsG0580024118.01.T01:CDS |
| GCTTATTACTGCTGCTGGCA+AGG | 0.455808 | 5:+1074689 | MsG0580024118.01.T01:CDS |
| CCTGCAGGAAGATAATGTTC+TGG | 0.460924 | 5:-1074270 | None:intergenic |
| TAAAGTCTAGCAGTGAGGTA+AGG | 0.466768 | 5:-1074072 | None:intergenic |
| GCACCTAGTTTGGCTACACT+TGG | 0.472608 | 5:+1074654 | MsG0580024118.01.T01:CDS |
| AAGCCAATGGATTGATCATA+GGG | 0.493639 | 5:-1074626 | None:intergenic |
| CACAATGTTGCTATGCGTGC+TGG | 0.494083 | 5:+1074435 | MsG0580024118.01.T01:CDS |
| TATTTGCTTGAGAAGCTAAG+AGG | 0.495362 | 5:-1074215 | None:intergenic |
| ATCCCATAAACAGTGACCCT+TGG | 0.503643 | 5:+1074346 | MsG0580024118.01.T01:CDS |
| GCTGGTGTTGAAGCTTTACC+TGG | 0.507340 | 5:+1074453 | MsG0580024118.01.T01:CDS |
| CCAGAACATTATCTTCCTGC+AGG | 0.510169 | 5:+1074270 | MsG0580024118.01.T01:CDS |
| CAACCAAGTGTAGCCAAACT+AGG | 0.512449 | 5:-1074657 | None:intergenic |
| TGAAGCAGAGTGGATGGAAA+GGG | 0.514300 | 5:+1074757 | MsG0580024118.01.T01:CDS |
| TTAGGGTCCTCTTGTTGTGG+AGG | 0.514344 | 5:-1074009 | None:intergenic |
| CATACCCTTCTGCTCCTGGT+GGG | 0.514348 | 5:+1074595 | MsG0580024118.01.T01:CDS |
| CAACAATCATTATAACCTGC+AGG | 0.516416 | 5:-1074285 | None:intergenic |
| AAAGTCTAGCAGTGAGGTAA+GGG | 0.520973 | 5:-1074071 | None:intergenic |
| TCACCATGATTGATGATCCA+AGG | 0.530810 | 5:-1074363 | None:intergenic |
| AATTGTTCCTCCACAACAAG+AGG | 0.537209 | 5:+1074002 | MsG0580024118.01.T01:CDS |
| GACCCTTGGATCATCAATCA+TGG | 0.542057 | 5:+1074360 | MsG0580024118.01.T01:CDS |
| GGTTATAATGATTGTTGGGA+TGG | 0.545788 | 5:+1074291 | MsG0580024118.01.T01:CDS |
| TAACCCTATGATCAATCCAT+TGG | 0.550304 | 5:+1074623 | MsG0580024118.01.T01:CDS |
| GCATACCCTTCTGCTCCTGG+TGG | 0.553551 | 5:+1074594 | MsG0580024118.01.T01:CDS |
| TCTAACCCACCAGGAGCAGA+AGG | 0.554714 | 5:-1074600 | None:intergenic |
| CCAAATACTTTAACACCACC+AGG | 0.556804 | 5:-1074471 | None:intergenic |
| GATCAATCCATTGGCTTCTG+GGG | 0.560544 | 5:+1074632 | MsG0580024118.01.T01:CDS |
| CACCATGATTGATGATCCAA+GGG | 0.575284 | 5:-1074362 | None:intergenic |
| GTGAAGCAGAGTGGATGGAA+AGG | 0.578917 | 5:+1074756 | MsG0580024118.01.T01:CDS |
| TTCATTGGTGGTGATAGTAG+TGG | 0.579203 | 5:+1074399 | MsG0580024118.01.T01:CDS |
| CTGATCTGTCCCTAAAGAGA+AGG | 0.583924 | 5:-1074716 | None:intergenic |
| AGCAGCAGTAATAAGCAACC+TGG | 0.585233 | 5:-1074682 | None:intergenic |
| AGGCTGTGAAGCAGAGTGGA+TGG | 0.590537 | 5:+1074751 | MsG0580024118.01.T01:CDS |
| TTGGGGTGCAAAACCAATAG+GGG | 0.592349 | 5:+1074518 | MsG0580024118.01.T01:CDS |
| CTAGGTGCCCCAGAAGCCAA+TGG | 0.603177 | 5:-1074639 | None:intergenic |
| CTAAGAGGTTACAATATGCA+TGG | 0.606809 | 5:-1074200 | None:intergenic |
| TTGCACCCCAAAAGTAAGGG+TGG | 0.616029 | 5:-1074506 | None:intergenic |
| GTTACAATATGCATGGTGGA+TGG | 0.616603 | 5:-1074193 | None:intergenic |
| TCATTATAGACAACTAAATG+GGG | 0.640179 | 5:-1073949 | None:intergenic |
| GCATAGCAACATTGTGACAA+AGG | 0.646408 | 5:-1074428 | None:intergenic |
| CAGATCAGAAAGATATTGTG+AGG | 0.650669 | 5:+1074731 | MsG0580024118.01.T01:CDS |
| GAAGCAGAGTGGATGGAAAG+GGG | 0.656872 | 5:+1074758 | MsG0580024118.01.T01:CDS |
| AACAGAGAGCAATAGTAACA+AGG | 0.661133 | 5:+1073906 | MsG0580024118.01.T01:CDS |
| ATTGGTGGTGATAGTAGTGG+TGG | 0.662504 | 5:+1074402 | MsG0580024118.01.T01:CDS |
| CTAACCCACCAGGAGCAGAA+GGG | 0.672739 | 5:-1074599 | None:intergenic |
| GGTGTTGAAGCTTTACCTGG+TGG | 0.679188 | 5:+1074456 | MsG0580024118.01.T01:CDS |
| AGAGGTTACAATATGCATGG+TGG | 0.694297 | 5:-1074197 | None:intergenic |
| ATAGGGTTATCTAACCCACC+AGG | 0.697160 | 5:-1074609 | None:intergenic |
| TGTGAGGCTGTGAAGCAGAG+TGG | 0.702765 | 5:+1074747 | MsG0580024118.01.T01:CDS |
| CATTATAGACAACTAAATGG+GGG | 0.705461 | 5:-1073948 | None:intergenic |
| GAAGGTAAAGTCTAGCAGTG+AGG | 0.726475 | 5:-1074077 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAGATTCATAAAAGTTT+TGG | + | Chr5:1074851-1074870 | MsG0580024118.01.T01:CDS | 15.0% |
| !! | ATCATTATAGACAACTAAAT+GGG | - | Chr5:1073953-1073972 | None:intergenic | 20.0% |
| !!! | GATTTTAATAGAGTTTTCAT+TGG | + | Chr5:1074384-1074403 | MsG0580024118.01.T01:CDS | 20.0% |
| ! | ACCATAAAAATAAACCAAGA+TGG | - | Chr5:1074142-1074161 | None:intergenic | 25.0% |
| ! | CATCATTATAGACAACTAAA+TGG | - | Chr5:1073954-1073973 | None:intergenic | 25.0% |
| ! | CATTTAGTTGTCTATAATGA+TGG | + | Chr5:1073952-1073971 | MsG0580024118.01.T01:CDS | 25.0% |
| ! | TCATTATAGACAACTAAATG+GGG | - | Chr5:1073952-1073971 | None:intergenic | 25.0% |
| !! | TTTAATAGAGTTTTCATTGG+TGG | + | Chr5:1074387-1074406 | MsG0580024118.01.T01:CDS | 25.0% |
| !!! | ATCTTGGTTTATTTTTATGG+TGG | + | Chr5:1074141-1074160 | MsG0580024118.01.T01:CDS | 25.0% |
| !!! | TCCATCTTGGTTTATTTTTA+TGG | + | Chr5:1074138-1074157 | MsG0580024118.01.T01:CDS | 25.0% |
| AGAACCTATTATTGGATTTG+AGG | + | Chr5:1074542-1074561 | MsG0580024118.01.T01:CDS | 30.0% | |
| ATTGGAAAAGACAATGTCTT+TGG | - | Chr5:1074049-1074068 | None:intergenic | 30.0% | |
| CATTATAGACAACTAAATGG+GGG | - | Chr5:1073951-1073970 | None:intergenic | 30.0% | |
| TGCAGGTTATAATGATTGTT+GGG | + | Chr5:1074287-1074306 | MsG0580024118.01.T01:CDS | 30.0% | |
| !! | TCATTGGAATGTGTTAGTTT+TGG | - | Chr5:1074102-1074121 | None:intergenic | 30.0% |
| !!! | GAGTTTTTGGTTATGATCAT+TGG | - | Chr5:1074118-1074137 | None:intergenic | 30.0% |
| AAAGTTTCTTGGACGATCTA+TGG | - | Chr5:1073980-1073999 | None:intergenic | 35.0% | |
| AACAGAGAGCAATAGTAACA+AGG | + | Chr5:1073906-1073925 | MsG0580024118.01.T01:CDS | 35.0% | |
| ATAATAGGTTCTTCCCCTAT+TGG | - | Chr5:1074534-1074553 | None:intergenic | 35.0% | |
| ATAGGGGAAGAACCTATTAT+TGG | + | Chr5:1074534-1074553 | MsG0580024118.01.T01:CDS | 35.0% | |
| CAACAATCATTATAACCTGC+AGG | - | Chr5:1074288-1074307 | None:intergenic | 35.0% | |
| CAGATCAGAAAGATATTGTG+AGG | + | Chr5:1074731-1074750 | MsG0580024118.01.T01:CDS | 35.0% | |
| CTAAGAGGTTACAATATGCA+TGG | - | Chr5:1074203-1074222 | None:intergenic | 35.0% | |
| CTGCAGGTTATAATGATTGT+TGG | + | Chr5:1074286-1074305 | MsG0580024118.01.T01:CDS | 35.0% | |
| GGAACAATTGGAAAGTTTCT+TGG | - | Chr5:1073991-1074010 | None:intergenic | 35.0% | |
| GGTTATAATGATTGTTGGGA+TGG | + | Chr5:1074291-1074310 | MsG0580024118.01.T01:CDS | 35.0% | |
| GTCTCCTCAAATCCAATAAT+AGG | - | Chr5:1074549-1074568 | None:intergenic | 35.0% | |
| TAACCAAAAACTCTCCATCT+TGG | + | Chr5:1074125-1074144 | MsG0580024118.01.T01:CDS | 35.0% | |
| TAACCCTATGATCAATCCAT+TGG | + | Chr5:1074623-1074642 | MsG0580024118.01.T01:CDS | 35.0% | |
| TATTTGCTTGAGAAGCTAAG+AGG | - | Chr5:1074218-1074237 | None:intergenic | 35.0% | |
| ! | AAACCAAGATGGAGAGTTTT+TGG | - | Chr5:1074131-1074150 | None:intergenic | 35.0% |
| ! | AGACTTTGCAATCTAGGATA+TGG | + | Chr5:1074565-1074584 | MsG0580024118.01.T01:CDS | 35.0% |
| ! | ATCTTAACCACCCTTACTTT+TGG | + | Chr5:1074499-1074518 | MsG0580024118.01.T01:CDS | 35.0% |
| ! | GTCACTGTTTATGGGATTTT+GGG | - | Chr5:1074343-1074362 | None:intergenic | 35.0% |
| ! | TGGAGCATTTCTATGTTCTA+TGG | - | Chr5:1074253-1074272 | None:intergenic | 35.0% |
| !! | AAGCCAATGGATTGATCATA+GGG | - | Chr5:1074629-1074648 | None:intergenic | 35.0% |
| !! | TCTTAACCACCCTTACTTTT+GGG | + | Chr5:1074500-1074519 | MsG0580024118.01.T01:CDS | 35.0% |
| !!! | TGGAATGTGTTAGTTTTGGA+AGG | - | Chr5:1074098-1074117 | None:intergenic | 35.0% |
| AAAGTCTAGCAGTGAGGTAA+GGG | - | Chr5:1074074-1074093 | None:intergenic | 40.0% | |
| AATTGTTCCTCCACAACAAG+AGG | + | Chr5:1074002-1074021 | MsG0580024118.01.T01:CDS | 40.0% | |
| AGAGGTTACAATATGCATGG+TGG | - | Chr5:1074200-1074219 | None:intergenic | 40.0% | |
| ATCCAAGGGTCACTGTTTAT+GGG | - | Chr5:1074351-1074370 | None:intergenic | 40.0% | |
| ATTGTTGGGATGGTCTCTAT+TGG | + | Chr5:1074301-1074320 | MsG0580024118.01.T01:CDS | 40.0% | |
| CAAGGATCACCTTCTCTTTA+GGG | + | Chr5:1074707-1074726 | MsG0580024118.01.T01:CDS | 40.0% | |
| CCAAATACTTTAACACCACC+AGG | - | Chr5:1074474-1074493 | None:intergenic | 40.0% | |
| GCATAGCAACATTGTGACAA+AGG | - | Chr5:1074431-1074450 | None:intergenic | 40.0% | |
| TAAAGTCTAGCAGTGAGGTA+AGG | - | Chr5:1074075-1074094 | None:intergenic | 40.0% | |
| TTGAGGAGACTTTGCAATCT+AGG | + | Chr5:1074559-1074578 | MsG0580024118.01.T01:CDS | 40.0% | |
| TTGTTGGGATGGTCTCTATT+GGG | + | Chr5:1074302-1074321 | MsG0580024118.01.T01:CDS | 40.0% | |
| ! | CACCATGATTGATGATCCAA+GGG | - | Chr5:1074365-1074384 | None:intergenic | 40.0% |
| ! | CCTGGTGGTGTTAAAGTATT+TGG | + | Chr5:1074471-1074490 | MsG0580024118.01.T01:CDS | 40.0% |
| ! | GGTCACTGTTTATGGGATTT+TGG | - | Chr5:1074344-1074363 | None:intergenic | 40.0% |
| ! | GTTACAATATGCATGGTGGA+TGG | - | Chr5:1074196-1074215 | None:intergenic | 40.0% |
| ! | GTTTTGCACCCCAAAAGTAA+GGG | - | Chr5:1074512-1074531 | None:intergenic | 40.0% |
| ! | TCACCATGATTGATGATCCA+AGG | - | Chr5:1074366-1074385 | None:intergenic | 40.0% |
| ! | TCTTGTTGTGGAGGAACAAT+TGG | - | Chr5:1074003-1074022 | None:intergenic | 40.0% |
| ! | TGGATGAGACACCAGTTTTA+GGG | - | Chr5:1074029-1074048 | None:intergenic | 40.0% |
| ! | TTGGATGAGACACCAGTTTT+AGG | - | Chr5:1074030-1074049 | None:intergenic | 40.0% |
| ! | TTTGGGGTGCAAAACCAATA+GGG | + | Chr5:1074517-1074536 | MsG0580024118.01.T01:CDS | 40.0% |
| !! | ATGATCAATCCATTGGCTTC+TGG | + | Chr5:1074630-1074649 | MsG0580024118.01.T01:CDS | 40.0% |
| !! | CTTAACCACCCTTACTTTTG+GGG | + | Chr5:1074501-1074520 | MsG0580024118.01.T01:CDS | 40.0% |
| !! | GAAGCCAATGGATTGATCAT+AGG | - | Chr5:1074630-1074649 | None:intergenic | 40.0% |
| !! | TGATCAATCCATTGGCTTCT+GGG | + | Chr5:1074631-1074650 | MsG0580024118.01.T01:CDS | 40.0% |
| !! | TTCATTGGTGGTGATAGTAG+TGG | + | Chr5:1074399-1074418 | MsG0580024118.01.T01:CDS | 40.0% |
| !!! | TTTTGGGGTGCAAAACCAAT+AGG | + | Chr5:1074516-1074535 | MsG0580024118.01.T01:CDS | 40.0% |
| AGCAGCAGTAATAAGCAACC+TGG | - | Chr5:1074685-1074704 | None:intergenic | 45.0% | |
| AGGTTGCTTATTACTGCTGC+TGG | + | Chr5:1074684-1074703 | MsG0580024118.01.T01:CDS | 45.0% | |
| ATAGGGTTATCTAACCCACC+AGG | - | Chr5:1074612-1074631 | None:intergenic | 45.0% | |
| ATCCCATAAACAGTGACCCT+TGG | + | Chr5:1074346-1074365 | MsG0580024118.01.T01:CDS | 45.0% | |
| CAACAAGAGGACCCTAAAAC+TGG | + | Chr5:1074015-1074034 | MsG0580024118.01.T01:CDS | 45.0% | |
| CAACCAAGTGTAGCCAAACT+AGG | - | Chr5:1074660-1074679 | None:intergenic | 45.0% | |
| CCAGAACATTATCTTCCTGC+AGG | + | Chr5:1074270-1074289 | MsG0580024118.01.T01:CDS | 45.0% | |
| CCTGCAGGAAGATAATGTTC+TGG | - | Chr5:1074273-1074292 | None:intergenic | 45.0% | |
| CTGATCTGTCCCTAAAGAGA+AGG | - | Chr5:1074719-1074738 | None:intergenic | 45.0% | |
| GAAGGTAAAGTCTAGCAGTG+AGG | - | Chr5:1074080-1074099 | None:intergenic | 45.0% | |
| GACCCTTGGATCATCAATCA+TGG | + | Chr5:1074360-1074379 | MsG0580024118.01.T01:CDS | 45.0% | |
| GATCCAAGGGTCACTGTTTA+TGG | - | Chr5:1074352-1074371 | None:intergenic | 45.0% | |
| GCAAGGATCACCTTCTCTTT+AGG | + | Chr5:1074706-1074725 | MsG0580024118.01.T01:CDS | 45.0% | |
| TGAAGCAGAGTGGATGGAAA+GGG | + | Chr5:1074757-1074776 | MsG0580024118.01.T01:CDS | 45.0% | |
| TTGGGGTGCAAAACCAATAG+GGG | + | Chr5:1074518-1074537 | MsG0580024118.01.T01:CDS | 45.0% | |
| ! | GGTTTTGCACCCCAAAAGTA+AGG | - | Chr5:1074513-1074532 | None:intergenic | 45.0% |
| !! | ATTGGTGGTGATAGTAGTGG+TGG | + | Chr5:1074402-1074421 | MsG0580024118.01.T01:CDS | 45.0% |
| !! | GATCAATCCATTGGCTTCTG+GGG | + | Chr5:1074632-1074651 | MsG0580024118.01.T01:CDS | 45.0% |
| !!! | GTTTTAGGGTCCTCTTGTTG+TGG | - | Chr5:1074015-1074034 | None:intergenic | 45.0% |
| AGCAGTGAGGTAAGGGTCAT+TGG | - | Chr5:1074067-1074086 | None:intergenic | 50.0% | |
| CACAATGTTGCTATGCGTGC+TGG | + | Chr5:1074435-1074454 | MsG0580024118.01.T01:CDS | 50.0% | |
| GAAGCAGAGTGGATGGAAAG+GGG | + | Chr5:1074758-1074777 | MsG0580024118.01.T01:CDS | 50.0% | |
| GCACCTAGTTTGGCTACACT+TGG | + | Chr5:1074654-1074673 | MsG0580024118.01.T01:CDS | 50.0% | |
| GCTTATTACTGCTGCTGGCA+AGG | + | Chr5:1074689-1074708 | MsG0580024118.01.T01:CDS | 50.0% | |
| GTGAAGCAGAGTGGATGGAA+AGG | + | Chr5:1074756-1074775 | MsG0580024118.01.T01:CDS | 50.0% | |
| TGGCTACACTTGGTTGTTCC+AGG | + | Chr5:1074664-1074683 | MsG0580024118.01.T01:CDS | 50.0% | |
| TTGCACCCCAAAAGTAAGGG+TGG | - | Chr5:1074509-1074528 | None:intergenic | 50.0% | |
| TTTGCATACCCTTCTGCTCC+TGG | + | Chr5:1074591-1074610 | MsG0580024118.01.T01:CDS | 50.0% | |
| ! | GCTGGTGTTGAAGCTTTACC+TGG | + | Chr5:1074453-1074472 | MsG0580024118.01.T01:CDS | 50.0% |
| ! | GGTGTTGAAGCTTTACCTGG+TGG | + | Chr5:1074456-1074475 | MsG0580024118.01.T01:CDS | 50.0% |
| ! | TTAGGGTCCTCTTGTTGTGG+AGG | - | Chr5:1074012-1074031 | None:intergenic | 50.0% |
| AGGCTGTGAAGCAGAGTGGA+TGG | + | Chr5:1074751-1074770 | MsG0580024118.01.T01:CDS | 55.0% | |
| CATACCCTTCTGCTCCTGGT+GGG | + | Chr5:1074595-1074614 | MsG0580024118.01.T01:CDS | 55.0% | |
| CTAACCCACCAGGAGCAGAA+GGG | - | Chr5:1074602-1074621 | None:intergenic | 55.0% | |
| GAGTGGATGGAAAGGGGAAG+TGG | + | Chr5:1074764-1074783 | MsG0580024118.01.T01:CDS | 55.0% | |
| TCTAACCCACCAGGAGCAGA+AGG | - | Chr5:1074603-1074622 | None:intergenic | 55.0% | |
| TGTGAGGCTGTGAAGCAGAG+TGG | + | Chr5:1074747-1074766 | MsG0580024118.01.T01:CDS | 55.0% | |
| CTAGGTGCCCCAGAAGCCAA+TGG | - | Chr5:1074642-1074661 | None:intergenic | 60.0% | |
| GCATACCCTTCTGCTCCTGG+TGG | + | Chr5:1074594-1074613 | MsG0580024118.01.T01:CDS | 60.0% | |
| !! | GGCTTCTGGGGCACCTAGTT+TGG | + | Chr5:1074644-1074663 | MsG0580024118.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 1073895 | 1074893 | 1073895 | ID=MsG0580024118.01;Name=MsG0580024118.01 |
| Chr5 | mRNA | 1073895 | 1074893 | 1073895 | ID=MsG0580024118.01.T01;Parent=MsG0580024118.01;Name=MsG0580024118.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|332 |
| Chr5 | exon | 1073895 | 1074893 | 1073895 | ID=MsG0580024118.01.T01:exon:23281;Parent=MsG0580024118.01.T01 |
| Chr5 | CDS | 1073895 | 1074893 | 1073895 | ID=MsG0580024118.01.T01:cds;Parent=MsG0580024118.01.T01 |
| Gene Sequence |
| Protein sequence |
