Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024232.01.T01 | XP_013470406.1 | 94.57 | 221 | 12 | 0 | 1 | 221 | 1 | 221 | 1.01E-151 | 430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024232.01.T01 | Q03663 | 48.182 | 220 | 110 | 2 | 1 | 220 | 1 | 216 | 1.12E-64 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048309.01 | MsG0580024232.01 | 0.823645 | 1.239008e-53 | 1.073148e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024232.01.T01 | MTR_1g115195 | 94.570 | 221 | 12 | 0 | 1 | 221 | 1 | 221 | 1.23e-155 | 430 |
| MsG0580024232.01.T01 | MTR_1g090150 | 49.321 | 221 | 108 | 2 | 1 | 220 | 1 | 218 | 8.83e-74 | 223 |
| MsG0580024232.01.T01 | MTR_1g090060 | 49.065 | 214 | 106 | 3 | 1 | 213 | 1 | 212 | 5.14e-69 | 211 |
| MsG0580024232.01.T01 | MTR_4g059730 | 49.767 | 215 | 104 | 4 | 1 | 213 | 1 | 213 | 7.55e-68 | 207 |
| MsG0580024232.01.T01 | MTR_1g090090 | 47.619 | 210 | 107 | 2 | 1 | 209 | 1 | 208 | 2.61e-65 | 201 |
| MsG0580024232.01.T01 | MTR_1g090070 | 44.393 | 214 | 117 | 2 | 1 | 213 | 7 | 219 | 1.00e-64 | 200 |
| MsG0580024232.01.T01 | MTR_8g087425 | 46.544 | 217 | 113 | 1 | 3 | 219 | 5 | 218 | 1.70e-64 | 199 |
| MsG0580024232.01.T01 | MTR_1g090100 | 48.792 | 207 | 103 | 2 | 4 | 209 | 3 | 207 | 2.58e-64 | 199 |
| MsG0580024232.01.T01 | MTR_6g080440 | 51.232 | 203 | 96 | 2 | 1 | 203 | 1 | 200 | 7.12e-63 | 195 |
| MsG0580024232.01.T01 | MTR_7g065720 | 45.972 | 211 | 112 | 1 | 3 | 213 | 7 | 215 | 1.52e-62 | 194 |
| MsG0580024232.01.T01 | MTR_4g019780 | 48.309 | 207 | 104 | 2 | 3 | 209 | 8 | 211 | 4.60e-62 | 193 |
| MsG0580024232.01.T01 | MTR_3g099757 | 48.804 | 209 | 102 | 3 | 4 | 211 | 6 | 210 | 5.16e-62 | 193 |
| MsG0580024232.01.T01 | MTR_4g019790 | 46.977 | 215 | 109 | 3 | 2 | 215 | 6 | 216 | 6.82e-62 | 193 |
| MsG0580024232.01.T01 | MTR_7g065590 | 45.909 | 220 | 112 | 4 | 3 | 220 | 7 | 221 | 9.24e-60 | 187 |
| MsG0580024232.01.T01 | MTR_7g065750 | 46.009 | 213 | 113 | 2 | 3 | 215 | 7 | 217 | 1.07e-59 | 187 |
| MsG0580024232.01.T01 | MTR_7g065740 | 45.771 | 201 | 107 | 1 | 3 | 203 | 7 | 205 | 1.77e-59 | 187 |
| MsG0580024232.01.T01 | MTR_7g065230 | 50.249 | 201 | 92 | 4 | 3 | 203 | 7 | 199 | 2.38e-59 | 186 |
| MsG0580024232.01.T01 | MTR_7g065265 | 46.544 | 217 | 113 | 3 | 3 | 219 | 7 | 220 | 4.77e-59 | 186 |
| MsG0580024232.01.T01 | MTR_7g065660 | 47.196 | 214 | 106 | 4 | 4 | 215 | 8 | 216 | 1.76e-58 | 184 |
| MsG0580024232.01.T01 | MTR_7g065600 | 44.601 | 213 | 115 | 2 | 3 | 215 | 7 | 216 | 1.84e-58 | 184 |
| MsG0580024232.01.T01 | MTR_8g087410 | 45.622 | 217 | 115 | 2 | 3 | 219 | 6 | 219 | 1.11e-57 | 182 |
| MsG0580024232.01.T01 | MTR_7g065290 | 45.622 | 217 | 115 | 3 | 3 | 219 | 7 | 220 | 7.73e-56 | 177 |
| MsG0580024232.01.T01 | MTR_7g065270 | 44.700 | 217 | 117 | 3 | 3 | 219 | 7 | 220 | 2.08e-55 | 176 |
| MsG0580024232.01.T01 | MTR_7g065710 | 45.050 | 202 | 100 | 4 | 4 | 203 | 5 | 197 | 5.82e-53 | 170 |
| MsG0580024232.01.T01 | MTR_7g065260 | 45.413 | 218 | 112 | 3 | 3 | 218 | 14 | 226 | 1.25e-52 | 169 |
| MsG0580024232.01.T01 | MTR_7g065640 | 43.868 | 212 | 98 | 3 | 4 | 215 | 8 | 198 | 1.28e-52 | 169 |
| MsG0580024232.01.T01 | MTR_5g037380 | 41.981 | 212 | 118 | 2 | 3 | 209 | 5 | 216 | 3.77e-49 | 160 |
| MsG0580024232.01.T01 | MTR_7g065630 | 41.475 | 217 | 116 | 5 | 3 | 217 | 25 | 232 | 8.87e-49 | 160 |
| MsG0580024232.01.T01 | MTR_8g061950 | 40.625 | 224 | 123 | 5 | 2 | 215 | 4 | 227 | 2.59e-48 | 158 |
| MsG0580024232.01.T01 | MTR_5g040430 | 37.327 | 217 | 129 | 4 | 2 | 213 | 6 | 220 | 1.88e-46 | 153 |
| MsG0580024232.01.T01 | MTR_2g070150 | 42.105 | 209 | 114 | 5 | 1 | 207 | 1 | 204 | 7.87e-44 | 146 |
| MsG0580024232.01.T01 | MTR_7g065700 | 43.350 | 203 | 104 | 4 | 3 | 203 | 7 | 200 | 8.29e-44 | 147 |
| MsG0580024232.01.T01 | MTR_7g065680 | 41.667 | 204 | 108 | 4 | 3 | 204 | 7 | 201 | 2.11e-42 | 143 |
| MsG0580024232.01.T01 | MTR_2g070120 | 40.000 | 210 | 119 | 5 | 1 | 208 | 1 | 205 | 4.93e-41 | 139 |
| MsG0580024232.01.T01 | MTR_2g070200 | 41.463 | 205 | 112 | 6 | 1 | 202 | 1 | 200 | 5.04e-41 | 139 |
| MsG0580024232.01.T01 | MTR_2g070130 | 39.614 | 207 | 116 | 6 | 1 | 204 | 1 | 201 | 7.75e-41 | 139 |
| MsG0580024232.01.T01 | MTR_2g070180 | 39.189 | 222 | 127 | 5 | 1 | 219 | 1 | 217 | 2.95e-40 | 137 |
| MsG0580024232.01.T01 | MTR_2g070140 | 40.415 | 193 | 109 | 4 | 17 | 208 | 2 | 189 | 1.01e-38 | 133 |
| MsG0580024232.01.T01 | MTR_8g056940 | 39.109 | 202 | 113 | 4 | 6 | 204 | 7 | 201 | 2.01e-38 | 132 |
| MsG0580024232.01.T01 | MTR_2g070210 | 39.623 | 212 | 119 | 6 | 1 | 208 | 1 | 207 | 1.15e-37 | 130 |
| MsG0580024232.01.T01 | MTR_3g467420 | 37.438 | 203 | 121 | 5 | 2 | 203 | 8 | 205 | 9.13e-35 | 123 |
| MsG0580024232.01.T01 | MTR_5g076900 | 36.744 | 215 | 127 | 5 | 3 | 213 | 6 | 215 | 1.09e-34 | 123 |
| MsG0580024232.01.T01 | MTR_3g467430 | 38.308 | 201 | 118 | 5 | 4 | 203 | 10 | 205 | 1.10e-34 | 123 |
| MsG0580024232.01.T01 | MTR_4g124130 | 43.979 | 191 | 94 | 7 | 3 | 188 | 4 | 186 | 2.31e-34 | 122 |
| MsG0580024232.01.T01 | MTR_2g070060 | 34.615 | 208 | 128 | 4 | 3 | 208 | 4 | 205 | 3.00e-34 | 122 |
| MsG0580024232.01.T01 | MTR_2g070070 | 35.885 | 209 | 124 | 5 | 3 | 208 | 4 | 205 | 8.39e-34 | 120 |
| MsG0580024232.01.T01 | MTR_2g070110 | 35.096 | 208 | 126 | 4 | 3 | 208 | 4 | 204 | 6.51e-32 | 116 |
| MsG0580024232.01.T01 | MTR_0186s0030 | 43.571 | 140 | 71 | 3 | 6 | 142 | 7 | 141 | 3.92e-28 | 103 |
| MsG0580024232.01.T01 | MTR_2g072120 | 42.373 | 59 | 33 | 1 | 47 | 104 | 2 | 60 | 1.70e-12 | 61.2 |
| MsG0580024232.01.T01 | MTR_5g037390 | 40.541 | 74 | 41 | 1 | 27 | 97 | 11 | 84 | 1.22e-11 | 59.7 |
| MsG0580024232.01.T01 | MTR_4g134370 | 28.638 | 213 | 127 | 9 | 6 | 204 | 18 | 219 | 1.77e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024232.01.T01 | AT2G29420 | 43.379 | 219 | 121 | 2 | 3 | 221 | 9 | 224 | 9.70e-61 | 190 |
| MsG0580024232.01.T01 | AT2G29460 | 44.907 | 216 | 107 | 4 | 3 | 213 | 7 | 215 | 1.10e-60 | 190 |
| MsG0580024232.01.T01 | AT2G29490 | 45.714 | 210 | 102 | 4 | 3 | 207 | 7 | 209 | 1.42e-57 | 182 |
| MsG0580024232.01.T01 | AT2G29470 | 44.651 | 215 | 106 | 5 | 4 | 212 | 8 | 215 | 3.42e-57 | 181 |
| MsG0580024232.01.T01 | AT2G29480 | 46.602 | 206 | 98 | 4 | 3 | 203 | 7 | 205 | 1.45e-56 | 179 |
| MsG0580024232.01.T01 | AT3G09270 | 45.540 | 213 | 109 | 5 | 4 | 213 | 7 | 215 | 1.45e-54 | 174 |
| MsG0580024232.01.T01 | AT2G29450 | 41.475 | 217 | 116 | 4 | 3 | 214 | 6 | 216 | 3.35e-54 | 173 |
| MsG0580024232.01.T01 | AT1G10370 | 39.623 | 212 | 122 | 3 | 2 | 208 | 4 | 214 | 4.44e-50 | 163 |
| MsG0580024232.01.T01 | AT2G29440 | 39.815 | 216 | 118 | 4 | 3 | 213 | 6 | 214 | 6.09e-50 | 162 |
| MsG0580024232.01.T01 | AT1G59700 | 40.359 | 223 | 114 | 5 | 3 | 213 | 6 | 221 | 4.38e-44 | 147 |
| MsG0580024232.01.T01 | AT1G78320 | 40.385 | 208 | 118 | 5 | 3 | 209 | 4 | 206 | 7.03e-44 | 147 |
| MsG0580024232.01.T01 | AT1G27130 | 38.350 | 206 | 120 | 4 | 4 | 203 | 7 | 211 | 8.10e-44 | 147 |
| MsG0580024232.01.T01 | AT1G69930 | 38.389 | 211 | 123 | 4 | 4 | 209 | 13 | 221 | 2.23e-43 | 146 |
| MsG0580024232.01.T01 | AT1G59670 | 39.171 | 217 | 115 | 5 | 3 | 208 | 6 | 216 | 3.81e-43 | 145 |
| MsG0580024232.01.T01 | AT1G10360 | 38.208 | 212 | 123 | 4 | 3 | 208 | 5 | 214 | 9.85e-42 | 141 |
| MsG0580024232.01.T01 | AT1G78340 | 40.284 | 211 | 119 | 5 | 1 | 209 | 1 | 206 | 2.07e-41 | 140 |
| MsG0580024232.01.T01 | AT1G78370 | 37.850 | 214 | 126 | 6 | 6 | 217 | 7 | 215 | 5.99e-41 | 139 |
| MsG0580024232.01.T01 | AT1G27140 | 37.387 | 222 | 131 | 4 | 4 | 218 | 7 | 227 | 4.08e-40 | 138 |
| MsG0580024232.01.T01 | AT1G69920 | 36.321 | 212 | 128 | 4 | 4 | 209 | 35 | 245 | 8.81e-40 | 137 |
| MsG0580024232.01.T01 | AT1G74590 | 35.268 | 224 | 133 | 4 | 2 | 218 | 6 | 224 | 9.85e-40 | 136 |
| MsG0580024232.01.T01 | AT1G17170 | 39.091 | 220 | 126 | 5 | 1 | 218 | 1 | 214 | 4.89e-39 | 134 |
| MsG0580024232.01.T01 | AT1G17180 | 40.376 | 213 | 116 | 6 | 1 | 209 | 1 | 206 | 1.22e-38 | 133 |
| MsG0580024232.01.T01 | AT5G62480 | 33.778 | 225 | 133 | 5 | 4 | 217 | 9 | 228 | 1.49e-37 | 131 |
| MsG0580024232.01.T01 | AT1G53680 | 36.538 | 208 | 128 | 4 | 2 | 208 | 6 | 210 | 2.93e-36 | 127 |
| MsG0580024232.01.T01 | AT3G43800 | 39.906 | 213 | 116 | 7 | 3 | 209 | 5 | 211 | 4.52e-36 | 127 |
| MsG0580024232.01.T01 | AT1G78380 | 35.160 | 219 | 136 | 4 | 3 | 220 | 4 | 217 | 5.39e-36 | 126 |
| MsG0580024232.01.T01 | AT1G17190 | 35.981 | 214 | 123 | 5 | 4 | 212 | 6 | 210 | 1.34e-32 | 117 |
| MsG0580024232.01.T01 | AT1G78360 | 35.111 | 225 | 133 | 6 | 2 | 221 | 3 | 219 | 5.00e-31 | 114 |
| MsG0580024232.01.T01 | AT1G78320 | 34.300 | 207 | 105 | 5 | 3 | 209 | 4 | 179 | 1.11e-28 | 107 |
| MsG0580024232.01.T01 | AT5G62480 | 27.232 | 224 | 123 | 5 | 4 | 217 | 9 | 202 | 8.35e-23 | 92.4 |
| MsG0580024232.01.T01 | AT5G62480 | 27.232 | 224 | 122 | 5 | 4 | 217 | 9 | 201 | 1.47e-22 | 91.7 |
| MsG0580024232.01.T01 | AT2G02390 | 38.043 | 92 | 53 | 2 | 4 | 92 | 9 | 99 | 3.50e-12 | 63.2 |
| MsG0580024232.01.T01 | AT2G02390 | 38.043 | 92 | 53 | 2 | 4 | 92 | 9 | 99 | 9.16e-12 | 62.8 |
| MsG0580024232.01.T01 | AT2G02380 | 37.234 | 94 | 55 | 2 | 2 | 92 | 10 | 102 | 3.13e-11 | 61.2 |
| MsG0580024232.01.T01 | AT2G02390 | 35.354 | 99 | 53 | 2 | 4 | 92 | 9 | 106 | 9.01e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAAAATCTTCCTGATTA+TGG | 0.108923 | 5:-2403002 | MsG0580024232.01.T01:CDS |
| TACATAAACATAGATTAATT+TGG | 0.111508 | 5:-2402874 | MsG0580024232.01.T01:three_prime_UTR |
| AGAGAGCTTTAGCTCGATTT+TGG | 0.209173 | 5:-2403467 | MsG0580024232.01.T01:CDS |
| AACAAAATCTTCCTGATTAT+GGG | 0.272110 | 5:-2403001 | MsG0580024232.01.T01:CDS |
| TGCCTTAGTCATTGGTTAGA+AGG | 0.310949 | 5:-2403119 | MsG0580024232.01.T01:CDS |
| GCTCTCTCATAGTTATCTTT+TGG | 0.314672 | 5:+2403483 | None:intergenic |
| ATGTGAAACTACTAGGATTT+TGG | 0.335659 | 5:-2403725 | MsG0580024232.01.T01:CDS |
| TTGAAGGAGTAGTTGACTTT+TGG | 0.346481 | 5:+2403620 | None:intergenic |
| ACAGGAACTTTCTTGTAAAC+AGG | 0.361686 | 5:+2403591 | None:intergenic |
| CATATGGATGCCTTAGTCAT+TGG | 0.368427 | 5:-2403127 | MsG0580024232.01.T01:CDS |
| TTTGGCAGCAATGGATTCTC+TGG | 0.371940 | 5:+2403501 | None:intergenic |
| ACATAAACATAGATTAATTT+GGG | 0.381294 | 5:-2402873 | MsG0580024232.01.T01:three_prime_UTR |
| CATATAACTCTATGAACAAA+AGG | 0.393447 | 5:+2403696 | None:intergenic |
| ATCTTGTTCAATGTAATCAT+AGG | 0.406036 | 5:+2403650 | None:intergenic |
| AGCAACAGTTTCCCATAATC+AGG | 0.412048 | 5:+2402990 | None:intergenic |
| TGTAAACAGGATTTGATTGA+AGG | 0.423673 | 5:+2403604 | None:intergenic |
| GATTAAATTTGGAGAAGATT+CGG | 0.428364 | 5:-2403445 | MsG0580024232.01.T01:intron |
| GAAGGGTTGGAGGAAATTGT+TGG | 0.447883 | 5:-2403101 | MsG0580024232.01.T01:CDS |
| AACTGTTGCTGCATCTTCAA+TGG | 0.448066 | 5:-2402977 | MsG0580024232.01.T01:CDS |
| TTGTCTTGGTGAATAAGAAC+AGG | 0.450062 | 5:+2403573 | None:intergenic |
| AAGAGCTAGTGCAATAGAAA+AGG | 0.455029 | 5:-2403237 | MsG0580024232.01.T01:CDS |
| AAGGGTTGGAGGAAATTGTT+GGG | 0.456983 | 5:-2403100 | MsG0580024232.01.T01:CDS |
| ATAATCGACGAGAGAGTGCT+AGG | 0.458753 | 5:-2403197 | MsG0580024232.01.T01:CDS |
| TTGAGTACATTGAAGAAACT+TGG | 0.470764 | 5:-2403524 | MsG0580024232.01.T01:CDS |
| TAGTCATTGGTTAGAAGGGT+TGG | 0.473171 | 5:-2403114 | MsG0580024232.01.T01:CDS |
| GCCTTAGTCATTGGTTAGAA+GGG | 0.474964 | 5:-2403118 | MsG0580024232.01.T01:CDS |
| ATGATTACATTGAACAAGAT+AGG | 0.478908 | 5:-2403647 | MsG0580024232.01.T01:CDS |
| TCATTGGTTAGAAGGGTTGG+AGG | 0.489794 | 5:-2403111 | MsG0580024232.01.T01:CDS |
| AGGCAATAATATTGGAATGA+TGG | 0.490930 | 5:-2403156 | MsG0580024232.01.T01:CDS |
| TGAATCCATGCATGCAACCT+AGG | 0.505314 | 5:+2403050 | None:intergenic |
| ATGGCAGATGTGAAACTACT+AGG | 0.506981 | 5:-2403732 | MsG0580024232.01.T01:CDS |
| AATTTCCTAGGTTGCATGCA+TGG | 0.507612 | 5:-2403055 | MsG0580024232.01.T01:CDS |
| TCGAGGCAGACAAATTTCCT+AGG | 0.538040 | 5:-2403067 | MsG0580024232.01.T01:CDS |
| ACTCAGCTATGGCTTTGTCT+TGG | 0.540830 | 5:+2403559 | None:intergenic |
| CAATGTGAGAAAAGTTGTGT+AGG | 0.543584 | 5:-2402928 | MsG0580024232.01.T01:three_prime_UTR |
| ACCCTTCTAACCAATGACTA+AGG | 0.545018 | 5:+2403117 | None:intergenic |
| GGAATGATGGACATTGCATA+TGG | 0.554707 | 5:-2403143 | MsG0580024232.01.T01:CDS |
| TAATCGACGAGAGAGTGCTA+GGG | 0.556220 | 5:-2403196 | MsG0580024232.01.T01:CDS |
| TTTACAAACATAGCAAGCTA+TGG | 0.562002 | 5:-2403751 | MsG0580024232.01.T01:exon |
| ATATAACTCTATGAACAAAA+GGG | 0.564144 | 5:+2403697 | None:intergenic |
| ATATGGGCTCTAAAATTCAA+AGG | 0.594904 | 5:-2403678 | MsG0580024232.01.T01:CDS |
| CAAAAGTAGATTCTCCGTTG+TGG | 0.600308 | 5:+2402781 | None:intergenic |
| AATAACAAGAGACTCAGCTA+TGG | 0.616951 | 5:+2403548 | None:intergenic |
| TGTTGGGATGAAATTGATCG+AGG | 0.655887 | 5:-2403084 | MsG0580024232.01.T01:CDS |
| GAAAAGGCACAAGAAACACT+CGG | 0.656301 | 5:-2403221 | MsG0580024232.01.T01:CDS |
| TATATTAAACTCGAACACGA+TGG | 0.674320 | 5:+2402818 | None:intergenic |
| AATCGACGAGAGAGTGCTAG+GGG | 0.677395 | 5:-2403195 | MsG0580024232.01.T01:CDS |
| AGAGACTAAAGCATCCACAA+CGG | 0.742821 | 5:-2402795 | MsG0580024232.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAAACATAGATTAATTT+GGG | - | Chr5:2403592-2403611 | MsG0580024232.01.T01:CDS | 15.0% |
| !! | ATAAACCTAAAAAGTAAAAA+AGG | + | Chr5:2403071-2403090 | None:intergenic | 15.0% |
| !! | TACATAAACATAGATTAATT+TGG | - | Chr5:2403591-2403610 | MsG0580024232.01.T01:CDS | 15.0% |
| !! | AGGAGATTAAGAAAAATAAA+TGG | - | Chr5:2403557-2403576 | MsG0580024232.01.T01:CDS | 20.0% |
| !! | ATATAACTCTATGAACAAAA+GGG | + | Chr5:2402771-2402790 | None:intergenic | 20.0% |
| !!! | AGTAAAAAAGGCATAATAAA+AGG | + | Chr5:2403059-2403078 | None:intergenic | 20.0% |
| !!! | GTAAAAAAGGCATAATAAAA+GGG | + | Chr5:2403058-2403077 | None:intergenic | 20.0% |
| !!! | TATAGTTGATTGATAATGTT+TGG | - | Chr5:2403143-2403162 | MsG0580024232.01.T01:CDS | 20.0% |
| !!! | TTATGCCTTTTTTACTTTTT+AGG | - | Chr5:2403063-2403082 | MsG0580024232.01.T01:CDS | 20.0% |
| !!! | TTTTGTTCATAGAGTTATAT+GGG | - | Chr5:2402771-2402790 | MsG0580024232.01.T01:three_prime_UTR | 20.0% |
| ! | AAACAAAATCTTCCTGATTA+TGG | - | Chr5:2403463-2403482 | MsG0580024232.01.T01:CDS | 25.0% |
| ! | AACAAAATCTTCCTGATTAT+GGG | - | Chr5:2403464-2403483 | MsG0580024232.01.T01:CDS | 25.0% |
| ! | ATCTTGTTCAATGTAATCAT+AGG | + | Chr5:2402818-2402837 | None:intergenic | 25.0% |
| ! | ATGATTACATTGAACAAGAT+AGG | - | Chr5:2402818-2402837 | MsG0580024232.01.T01:three_prime_UTR | 25.0% |
| ! | CATATAACTCTATGAACAAA+AGG | + | Chr5:2402772-2402791 | None:intergenic | 25.0% |
| ! | GATTAAATTTGGAGAAGATT+CGG | - | Chr5:2403020-2403039 | MsG0580024232.01.T01:CDS | 25.0% |
| !! | CTTTTGTTCATAGAGTTATA+TGG | - | Chr5:2402770-2402789 | MsG0580024232.01.T01:three_prime_UTR | 25.0% |
| !!! | GGAAGATTTTGTTTAATCAA+TGG | + | Chr5:2403457-2403476 | None:intergenic | 25.0% |
| !!! | TTTTTTGGAGGCAATAATAT+TGG | - | Chr5:2403301-2403320 | MsG0580024232.01.T01:intron | 25.0% |
| AGGCAATAATATTGGAATGA+TGG | - | Chr5:2403309-2403328 | MsG0580024232.01.T01:intron | 30.0% | |
| GTCAAATCAACTATAATCCA+CGG | + | Chr5:2403095-2403114 | None:intergenic | 30.0% | |
| TATATTAAACTCGAACACGA+TGG | + | Chr5:2403650-2403669 | None:intergenic | 30.0% | |
| TGTAAACAGGATTTGATTGA+AGG | + | Chr5:2402864-2402883 | None:intergenic | 30.0% | |
| TTGAGTACATTGAAGAAACT+TGG | - | Chr5:2402941-2402960 | MsG0580024232.01.T01:exon | 30.0% | |
| TTTACAAACATAGCAAGCTA+TGG | - | Chr5:2402714-2402733 | MsG0580024232.01.T01:three_prime_UTR | 30.0% | |
| ! | ATGTGAAACTACTAGGATTT+TGG | - | Chr5:2402740-2402759 | MsG0580024232.01.T01:three_prime_UTR | 30.0% |
| ! | GCTCGATTTTGGATTAAATT+TGG | - | Chr5:2403009-2403028 | MsG0580024232.01.T01:CDS | 30.0% |
| !! | ATATGGGCTCTAAAATTCAA+AGG | - | Chr5:2402787-2402806 | MsG0580024232.01.T01:three_prime_UTR | 30.0% |
| !! | CTTTCTTTTTCGTCTTTAGA+GGG | + | Chr5:2403211-2403230 | None:intergenic | 30.0% |
| !! | TCTTTCTTTTTCGTCTTTAG+AGG | + | Chr5:2403212-2403231 | None:intergenic | 30.0% |
| !!! | TACTTTTTAGGTTTATTCCG+TGG | - | Chr5:2403075-2403094 | MsG0580024232.01.T01:CDS | 30.0% |
| AAGAGCTAGTGCAATAGAAA+AGG | - | Chr5:2403228-2403247 | MsG0580024232.01.T01:CDS | 35.0% | |
| AATAACAAGAGACTCAGCTA+TGG | + | Chr5:2402920-2402939 | None:intergenic | 35.0% | |
| ACAGGAACTTTCTTGTAAAC+AGG | + | Chr5:2402877-2402896 | None:intergenic | 35.0% | |
| CAATGTGAGAAAAGTTGTGT+AGG | - | Chr5:2403537-2403556 | MsG0580024232.01.T01:CDS | 35.0% | |
| TTGTCTTGGTGAATAAGAAC+AGG | + | Chr5:2402895-2402914 | None:intergenic | 35.0% | |
| ! | GCTCTCTCATAGTTATCTTT+TGG | + | Chr5:2402985-2403004 | None:intergenic | 35.0% |
| ! | TAGTTATCTTTTGGCAGCAA+TGG | + | Chr5:2402976-2402995 | None:intergenic | 35.0% |
| !! | TTGAAGGAGTAGTTGACTTT+TGG | + | Chr5:2402848-2402867 | None:intergenic | 35.0% |
| AACTGTTGCTGCATCTTCAA+TGG | - | Chr5:2403488-2403507 | MsG0580024232.01.T01:CDS | 40.0% | |
| AAGGGTTGGAGGAAATTGTT+GGG | - | Chr5:2403365-2403384 | MsG0580024232.01.T01:intron | 40.0% | |
| AATTTCCTAGGTTGCATGCA+TGG | - | Chr5:2403410-2403429 | MsG0580024232.01.T01:intron | 40.0% | |
| ACCCTTCTAACCAATGACTA+AGG | + | Chr5:2403351-2403370 | None:intergenic | 40.0% | |
| AGCAACAGTTTCCCATAATC+AGG | + | Chr5:2403478-2403497 | None:intergenic | 40.0% | |
| ATGGCAGATGTGAAACTACT+AGG | - | Chr5:2402733-2402752 | MsG0580024232.01.T01:three_prime_UTR | 40.0% | |
| CAAAAGTAGATTCTCCGTTG+TGG | + | Chr5:2403687-2403706 | None:intergenic | 40.0% | |
| CATATGGATGCCTTAGTCAT+TGG | - | Chr5:2403338-2403357 | MsG0580024232.01.T01:intron | 40.0% | |
| TGTTGGGATGAAATTGATCG+AGG | - | Chr5:2403381-2403400 | MsG0580024232.01.T01:intron | 40.0% | |
| ! | AGAGACTAAAGCATCCACAA+CGG | - | Chr5:2403670-2403689 | MsG0580024232.01.T01:CDS | 40.0% |
| ! | GAAAAGGCACAAGAAACACT+CGG | - | Chr5:2403244-2403263 | MsG0580024232.01.T01:CDS | 40.0% |
| ! | GCCTTAGTCATTGGTTAGAA+GGG | - | Chr5:2403347-2403366 | MsG0580024232.01.T01:intron | 40.0% |
| ! | TAGTCATTGGTTAGAAGGGT+TGG | - | Chr5:2403351-2403370 | MsG0580024232.01.T01:intron | 40.0% |
| ! | TGCCTTAGTCATTGGTTAGA+AGG | - | Chr5:2403346-2403365 | MsG0580024232.01.T01:intron | 40.0% |
| !! | AGAGAGCTTTAGCTCGATTT+TGG | - | Chr5:2402998-2403017 | MsG0580024232.01.T01:CDS | 40.0% |
| !! | CTTTTTCGTCTTTAGAGGGT+CGG | + | Chr5:2403207-2403226 | None:intergenic | 40.0% |
| !! | GGAATGATGGACATTGCATA+TGG | - | Chr5:2403322-2403341 | MsG0580024232.01.T01:intron | 40.0% |
| !!! | CTAGGGGACAAGAAGTTTTT+TGG | - | Chr5:2403286-2403305 | MsG0580024232.01.T01:CDS | 40.0% |
| GAAGGGTTGGAGGAAATTGT+TGG | - | Chr5:2403364-2403383 | MsG0580024232.01.T01:intron | 45.0% | |
| TCGAGGCAGACAAATTTCCT+AGG | - | Chr5:2403398-2403417 | MsG0580024232.01.T01:intron | 45.0% | |
| TGAATCCATGCATGCAACCT+AGG | + | Chr5:2403418-2403437 | None:intergenic | 45.0% | |
| ! | TCATTGGTTAGAAGGGTTGG+AGG | - | Chr5:2403354-2403373 | MsG0580024232.01.T01:intron | 45.0% |
| ! | TTTGGCAGCAATGGATTCTC+TGG | + | Chr5:2402967-2402986 | None:intergenic | 45.0% |
| !! | ACTCAGCTATGGCTTTGTCT+TGG | + | Chr5:2402909-2402928 | None:intergenic | 45.0% |
| !! | ATAATCGACGAGAGAGTGCT+AGG | - | Chr5:2403268-2403287 | MsG0580024232.01.T01:CDS | 45.0% |
| !! | TAATCGACGAGAGAGTGCTA+GGG | - | Chr5:2403269-2403288 | MsG0580024232.01.T01:CDS | 45.0% |
| !!! | GGGGACAAGAAGTTTTTTGG+AGG | - | Chr5:2403289-2403308 | MsG0580024232.01.T01:CDS | 45.0% |
| !! | AATCGACGAGAGAGTGCTAG+GGG | - | Chr5:2403270-2403289 | MsG0580024232.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 2402713 | 2403774 | 2402713 | ID=MsG0580024232.01;Name=MsG0580024232.01 |
| Chr5 | mRNA | 2402713 | 2403774 | 2402713 | ID=MsG0580024232.01.T01;Parent=MsG0580024232.01;Name=MsG0580024232.01.T01;_AED=0.46;_eAED=0.46;_QI=20|1|1|1|1|1|2|240|221 |
| Chr5 | exon | 2402713 | 2403309 | 2402713 | ID=MsG0580024232.01.T01:exon:1712;Parent=MsG0580024232.01.T01 |
| Chr5 | exon | 2403446 | 2403774 | 2403446 | ID=MsG0580024232.01.T01:exon:1711;Parent=MsG0580024232.01.T01 |
| Chr5 | five_prime_UTR | 2403755 | 2403774 | 2403755 | ID=MsG0580024232.01.T01:five_prime_utr;Parent=MsG0580024232.01.T01 |
| Chr5 | CDS | 2403446 | 2403754 | 2403446 | ID=MsG0580024232.01.T01:cds;Parent=MsG0580024232.01.T01 |
| Chr5 | CDS | 2402953 | 2403309 | 2402953 | ID=MsG0580024232.01.T01:cds;Parent=MsG0580024232.01.T01 |
| Chr5 | three_prime_UTR | 2402713 | 2402952 | 2402713 | ID=MsG0580024232.01.T01:three_prime_utr;Parent=MsG0580024232.01.T01 |
| Gene Sequence |
| Protein sequence |
